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Mechanisms of Negative Regulation of Protein Prenylation: Investigation of Murine Guanylate-Binding Protein 1 Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 2000 Mechanisms of negative regulation of protein prenylation: investigation of murine guanylate- binding protein 1 John Thomas Stickney Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Biochemistry Commons, Cell Biology Commons, and the Molecular Biology Commons Recommended Citation Stickney, John Thomas, "Mechanisms of negative regulation of protein prenylation: investigation of murine guanylate-binding protein 1 " (2000). Retrospective Theses and Dissertations. 13934. https://lib.dr.iastate.edu/rtd/13934 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author dkl not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletkNi. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overiaps. Photographs included in the original manuscript have been reproduced xerographically in this copy. Higher quality 6' x 9" t)lack and white photographic prints are availat)le for any photographs or illustratkxis appearing in this copy for an additional charge. Contact UMI directiy to order. Bell & Howell Information and Learning 300 North Zeeb Road. Ann Arbor, Ml 48106-1346 USA 800-521-0600 Mechanisms of negative regulation of protein prenylation: Investigation of murine guanylate-binding protein 1 by John Thomas Stickney A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DCXn-OR OF PfflLOSOPHY Major: Molecular, Cellular, and Developmental Biology Major Professor; Janice E. Buss Iowa State University Ames, Iowa 2000 UMI Number: 9962850 <Ki UMI UMI Microform9962850 Copyright 2000 by Bell & Howell Information and Leaming Company. All rights reserved. This microform edition is protected against unauthorized copying under Title 17, United States Code. Bell & Howell Information and Leaming Company 300 North Zeeb Road P.O. 80x1346 Ann Arbor, Ml 48106-1346 ii Graduate College Iowa State University This is to certify that the Doctoral dissertation of John Thomas Stickney has met the dissertation requirements of Iowa State University Signature was redacted for privacy. Major Professor Signature was redacted for privacy. or the Major Program Signature was redacted for privacy. For the Graduate College iii In Memory This woric is dedicated to the memory of my father Thomas Allen Stickney who, with my mother Joan, always stressed the importance of education. iv TABLE OF CONTENTS CHAPTER 1. GENERAL INTRODUCTION 1 Introduction 1 Dissertation Organization 1 Literature Review 2 References 17 CHAPTER 2. MURINE GBP I: INCOMPLETE C20ISOPRENOID 35 MODinCATION OF AN IFNy-INDUCIBLE GTP-BINDING PROTEIN Abstract 35 Introduction 36 Materials and Methods 38 Results 40 Discussion 47 Acknowledgments 51 References 52 CHAPTER 3. INHIBITION OF C20 MODIHCATION OF MGBPl'S CAAX 67 MOTIF IS MEDIATED BY MGBPl C- AND N-TERMINAL PROTEIN ELEMENTS Absu-act 67 Introduction 68 Materials and Methods 71 Results 74 Discussion 82 Acknowledgments 86 References 86 CHAPTER 4. GENERAL CONCLUSIONS 98 Overview 98 Regulation of Prenylation? 99 Biological Significance 100 References 101 ACKNOWLEDGMENTS 102 I CHAPTER 1. GENERAL INTRODUCTION Introduction Since 1989, the study of isoprenoid-modified (prenylated) proteins has emerged as an extremely active area of research due to the great potential for novel therapeutic applications, as many prenylated proteins play prominent roles in cancer biology, viral and microbial infections, and other disease states. The numbers and types of proteins that are modified on their C-termini with 15 or 20 carbon isoprenoids continues to expand, and as the list of prenylated proteins grows, so does the potential for pharmacological intervention. Thus, it is imperative that research continues into both the basic mechanisms governing protein prenylation, as well as the subsequent biological consequences of this modification. The work presented in this dissertation describes a novel aspect of prenylation - one in which a protein (mGBPl) fails to be prenylated. The mechanism behind this lack of prenylation appears to involve contributions from both N- and C-terminal regions of mGBPl, and as such represents a previously unrecognized means of cellular regulation of prenylation. A complete understanding of this unique mechanism may lead to the development of new compounds for the treatment of cancer and other diseases. Dissertation Organization This first chapter of the dissertation will detail the current status of what is known regarding the mechanisms and processing events associated with protein prenylation as well as the biological effects this class of modiHcation can have on the various proteins to which it is attached. Additionally, the potential benefits and shortcomings of preventing cellular prenylation in the treatment of diseases will also be discussed as will our model system for studying novel aspects of prenylation (Guanylate Binding Proteins). Chapter 2, which has been submitted for publication in the journal Molecular Biology of the Cell, is the initial characterization of the prenylation of murine Guanylate Binding Protein-1 (mGBPl). The main fmding of this paper was the surprising defect in isoprenoid 2 attachment to mGBPl in vivo, even though this protein possesses a suitable CaaX motif at its C-terminus. Our initial mutational analysis of mGBPl showed that amino acids within its C- terminus play a role in preventing efficient modification by geranylgeranyl transferase I (GGTase I). The third chapter, to be submitted to the Journal of Biological Chemistry, extends the initial findings of Chapter 2 by demonsu-ating that the observed difficulty in the prenylation of mGBPl seen in cells also occurs in in vitro conditions and therefore does not result from difficulties in cellular metabolism of isoprenoids or prenyl transferase inaccessibility, but instead, must arise from an intrinsic property of mGBPl itself. We also show in Chapter 3 that the C-terminus of mGBPl is an acceptable substrate for prenylation when it is removed from the context of the native protein, thus implicating the body of mGBPl as an inhibitory regulator of prenylation of the C-terminus. Removal of various internal domains of mGBPl revealed that the N-terminal region possessing the GTP-binding domain strongly participates in blocking geranylgeranylation of the C-terminal CaaX motif. This highly unexpected finding demonstrates that mGBPl represents a new example in the field of protein prenylation whereby a GTP-binding domain can negatively influence CaaX motif utilization. Chapter 4 will present the general conclusions drawn from this work as it applies to the field of protein prenylation. Literature Review INTRODUCTION TO PROTEIN PRENYLATION Naturally occurring covalent modification of peptides by isoprenoids was first described over twenty years ago for a mating factor from the fungus Rhodosporidium toruloides (61). However, because researchers were unaware of cellular signal sequences for prenylation, similar modification of eukaryotic proteins remained largely ignored for over a decade. Not until the Ras family of proteins was shown to be prenylated (48) with famesyl 3 isoprenoids (17) did the scientific community turn their full attention to this novel post- translational protein modiHcation. Famesyl (15 carbons) and geranylgeranyl (20 carbons) isoprenoids are found in C- terminal thioether linkages with cysteine residues in approximately 2% of all cellular proteins (34) (for reviews of prenylation, see (16,42, 83, 138)). The enzymes that attach these lipids are grouped into two classes. The first, diose of the CaaX prenyl transferases, catalyze the prenylation of proteins possessing a CaaX motif as their final four amino acids. These enzymes, and their potential substrates, will form the focus of the review and also the subsequent data chapters. The second class of enzyme, Rab geranylgeranyl transferase (GGTase 11), geranylgeranylates the Rab family of GTPases and will not be discussed. The CadX motif refers to the final four amino acids of a protein where C stands for the cysteine to be prenylated, followed by two generally aliphatic (a) amino acids and the final amino acid of the protein, X. The existence of this motif was first hypothesized as researchers began to compare the C-termini of known prenylated proteins (38). However,
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