GENESIS User Guide Release 1.6.1
GENESIS User Guide Release 1.6.1 RIKEN Jul 28, 2021 GENESIS 1.6.1 Project Leader: Yuji Sugita (RIKEN) Current main developers: Jaewoon Jung (RIKEN), Chigusa Kobayashi (RIKEN), Takaharu Mori (RIKEN), Hiraku Oshima (RIKEN), Kiyoshi Yagi (RIKEN) Current developers/contributors: Shingo Ito (RIKEN), Motoshi Kamiya (RIKEN/IMS), Kento Kasahara (RIKEN/Osaka Univ.), Yasuhiro Matsunaga (RIKEN/Saitama Univ.), Daisuke Matsuoka (RIKEN/RIST), Osamu Miyashita (RIKEN), Suyong Re (RIKEN/NIBIOHN), Ai Shinobu (RIKEN), Yosuke Sumiya (RIKEN), Florence Tama (RIKEN/Nagoya Univ.), Chen Tan (RIKEN), Isseki Yu (RIKEN/Maebashi Institute of Technology) Other developers/contributors for older versions: Tadashi Ando (RIKEN), Michael Feig (Michigan State University), Raimondas Galvelis (RIKEN), Ryuhei Harada (RIKEN), Takashi Imai (RIKEN), Yasuaki Komuro (RIKEN), Yasuhito Karino (RIKEN), Naoyuki Miyashita (RIKEN), Wataru Nishima (RIKEN), Donatas Surblys (RIKEN), Koichi Tamura (RIKEN), Kenta Yamada (RIKEN), Takao Yoda (Nagahama Institute of Bio-Science and Technology), Acknowledgments: Norio Takase (Isogo Soft), Yasumasa Joti (RIKEN SPring8), Akira Naruse (NVIDIA), Yukihiko Hirano (NVIDIA Japan), Hikaru Inoue (Fujitsu Ltd.), To- moyuki Noda (Fujitsu Ltd.), Kiyotaka Sakamoto (Fujitsu Ltd.), Yoshinobu Akinaga (VINAS), Yoshitake Sakae (RIST), Nobuhiko Kato (ASTOM R&D), Toru Shiozaki (QSim- ulate), Klaas Gunst (QSimualte) Copyright ©2014-2021 RIKEN. All Rights Reserved GENESIS website https://www.r-ccs.riken.jp/labs/cbrt/ Citation Information • C. Kobayashi, J. Jung, Y. Matsunaga, T. Mori, T. Ando, K. Tamura, M. Kamiya, and Y. Sugita, "GENESIS 1.1: A hybrid-parallel molecular dynamics simulator with enhanced sampling algo- rithms on multiple computational platforms", J. Comput. Chem. 38, 2193-2206 (2017). • J. Jung, T. Mori, C. Kobayashi, Y. Matsunaga, T.
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