Supplemental Material for:

Physiological and transcriptional response of the diatom Corethron hystrix under robust

UVB irradiation

Robert W. Read1, David C. Vuono1, Iva Neveux1, Carl Staub2 and Joseph J. Grzymski1

Supplemental Text

NEST CONFIGURABLE EMITTER ARRAY SPECIFICATION

VIS Blue Emitter Array • SMD Blue LED x (3) / spaced 120º / Optically Centered on 25.4mm Radius • Total Array Input Power @ 100ma: 885mW (design limited) • Radiant Geometry per LED: 125 Degree / Lambertian • Typical Peak Wavelength 447.5nm (440nm – 460nm) • FWHM: 20nm (± 1.5nm) • Array Radiometric Output @ 100ma: 388mW (±6.5%) • 70% Lumen Maintenance 50,000hrs. @ 50º C

VIS Red Emitter Array • SMD Red LED x (3) / spaced 120º / Optically Centered on 25.4mm Radius • Total Array Input Power @ 100ma (3 Emitters): 630mW • Radiant Geometry per LED: 125 Degree / Lambertian • Peak Center Wavelength: 662.5nm (± 8nm) • FWHM: 20nm (± 2.0nm) • Array Radiometric Power @ 100ma: 274mW (±6.5%) • 70% Lumen Maintenance 50,000hrs. @ 50º C

VIS White Emitter Array • SMD White LED x (6) / spaced 120º / Optically Centered on 33.4mm Radius • Total Array Input Power @ 100ma: 1.65 Watts (design limited) • Radiant Geometry per Emitter: 120 Degree / Lambertian • Color Temperature: 3985K (3710K – 4260K) • Total Array Luminous Flux : 180 Lumens • 70% Lumen Maintenance 50,000hrs. @ 35º C

UV Emitter Array • Solid-State Substrate Emitter x (3) / spaced 120º / Optically Centered on 25.4mm Radius • Array SAO Continuous Input Power: 160mW (design limited) • Radiant Geometry per Emitter: 120 Degree / Conical • Center Wavelength: 285nm (± 5nm) • FWHM: 13.5nm (± 1.5nm) • Total Array Radiometric Power @ 22ma: 2.1mW maximum

NEST EMITTER CONTROL UNIT SPECIFICATIONS

The NEST emitter control unit is a custom designed four-channel isolated direct current analog power supply designed specifically to provide temperature stable and highly regulated clean DC power to each of the four emitter channels of the NEST emitter array. SPECIFICATIONS • Input Voltage: 95 – 130vac, 50/60Hz (Internally configurable for 190 – 260vac, 50/60Hz) • Line / Load Regulation: Better than ±0.25% • EMI/RFI Line Isolation: Better than 80db • Number of Outputs: Four independently adjustable discrete channels • Outputs: Super-regulated and temperature compensated constant current DC • Output Types: Continuously adjustable, maximum power limited for each emitter array type SAO • Data Output: Voltage and current for power adjustment and monitoring of each channel

EMITTER OUTPUT POWER ADJUSTMENT LIMITS Blue Channel: Array Radiometric Power Output Adjustment Ratio: 20mW – 388mW Red Channel: Array Radiometric Power Output Adjustment Ratio: 14mW – 274mW White Channel: Array Luminous Flux Adjustment Ratio: 10 Lumens – 180 Lumens UV Channel: Array Radiometric Power Output Adjustment Ratio: 0.4mW – 2.1mW

Supplemental Figures

A B 1400 70000 Culture Culture C. hystrix Chlorophyll a C. hystrix Cell Counts 1200 60000 g/L) µ

1000 50000

800 40000

600 30000

Cell Counts (cells/mL)

400 Average Chlorophyll Values ( Values Chlorophyll Average 20000

200 01234567 01234567

Day Day

Figure S1: A. C. hystrix growth based on chlorophyll a. Average chlorophyll a measurements in

µg/L were extracted daily, with error bars representing the standard error of 2 biological

replicates. B. C. hystrix growth based on microscopic cell counts. Cell counts in cells/mL were

collected in triplicate daily with error bars representing the standard error of the three counts.

Standard errors are smaller than the symbols when not visible. Growth rates are similar between

the two methods. 600

g/L) Power µ 500 Control 0.32 mW / cm2 0.64 mW / cm2 0.96 mW / cm2 1.28 mW / cm2 2 400 1.59 mW / cm Total Chlorophyll a ( Chlorophyll Total

300 0246 Time Under UVB Irradiation (hrs)

Figure S2: Total Chlorophyll a during the 6 hour UVB irradiation period. Total chlorophyll a in

µg/L was measured during the 6-hour irradiation period for non-irradiated cells and cells under 5 different intensities of UVB (0.32 mW/cm2 – 1.59 mW/cm2). The black line represents the non- irradiated cells; other lighter lines represent the different intensities of UVB irradiation.

Chlorophyll a measurements were collected every two hours. Error bars represent the standard error between the replicates. Control 0.32 mW/cm2 0.64 mW/cm2 30000 30000 20000 20000 20000 10000 10000 10000

0 0 0 0246 0246 0246 0.96 mW/cm2 1.28 mW/cm2 1.59 mW/cm2 20000 20000 20000 15000 15000 10000 10000 10000

Amount of Morphologically Intact Cells 5000 5000 0 0 0 0246 0246 0246 Time (hrs)

Figure S3: Morphologically intact cells during the 6 hour UVB irradiation period.

Morphologically intact cells were estimated by bright light microscopy over the 6-hour irradiation period. All counts were collected both the non-irradiated cells and cells under 5 different intensities of UVB (0.32 mW/cm2 – 1.59 mW/cm2). Intact cell counts were collected in triplicate every 2 hours with error bars representing the standard error between replicated counts. Fv/Fm Sigma 300 0.5

0.4 250

0.3 200

0.2 Treatment 0123456 0123456 0.32 mW / cm2

Value Tau 1 Tau 2 Control

1000 8000 900

800 6000

700 4000 0123456 0123456 Irradiation Length (hrs)

Figure S4: Photosynthetic kinetic measurements for cells irradiated at 0.32 mW/cm2. Cells irradiated at 0.32 mW/cm2 for 6 hours had Fv/Fm (top left), sigma (top right), Tau 1 (bottom left) and Tau 2 (bottom right) measurements taken hourly over the course of the experiment. Black lines represent the measurements for the irradiated cells while the lighter grey line represents the measurements for the non-irradiated cells. Error bars represent the standard errors between biological replicates. Fv/Fm Sigma

0.5 300 0.4 250 0.3

200 0.2

Treatment 0123456 0123456 0.64 mW / cm2

Value Tau 1 Tau 2 Control

2000 30000

1500 20000

1000 10000

0123456 0123456 Irradiation Length (hrs)

Figure S5: Photosynthetic kinetic measurements for cells irradiated at 0.64 mW/cm2. Cells irradiated at 0.64 mW/cm2 for 6 hours had Fv/Fm (top left), sigma (top right), Tau 1 (bottom left) and Tau 2 (bottom right) measurements taken hourly over the course of the experiment. Black lines represent the measurements for the irradiated cells while the lighter grey line represents the measurements for the non-irradiated cells. Error bars represent the standard errors between biological replicates.

Fv/Fm Sigma

0.5 500 0.4 400 0.3 300 0.2 200 0.1 Treatment 0123456 0123456 0.96 mW / cm2

Value Tau 1 Tau 2 Control 6000 150000 5000

4000 100000

3000

2000 50000

1000 0 0123456 0123456 Irradiation Length (hrs)

Figure S6: Photosynthetic kinetic measurements for cells irradiated at 0.96 mW/cm2. Cells irradiated at 0.96 mW/cm2 for 6 hours had Fv/Fm (top left), sigma (top right), Tau 1 (bottom left) and Tau 2 (bottom right) measurements taken half-hourly over the course of the experiment.

Black lines represent the measurements for the irradiated cells while the lighter grey line represents the measurements for the non-irradiated cells. Error bars represent the standard errors between biological replicates. Fv/Fm Sigma

0.5 350 0.4 300 0.3

0.2 250

0.1 200

0.0 150 Treatment 0123456 0123456 1.28 mW / cm2

Value Tau 1 Tau 2 Control 200000 7500 150000

5000 100000

2500 50000

0 0123456 0123456 Irradiation Length (hrs)

Figure S7: Photosynthetic kinetic measurements for cells irradiated at 1.28 mW/cm2. Cells irradiated at 1.28 mW/cm2 for 6 hours had Fv/Fm (top left), sigma (top right), Tau 1 (bottom left) and Tau 2 (bottom right) measurements taken half-hourly over the course of the experiment.

Black lines represent the measurements for the irradiated cells while the lighter grey line represents the measurements for the non-irradiated cells. Error bars represent the standard errors between biological replicates. Fv/Fm Sigma

0.5 500 0.4

0.3 400

0.2 300

0.1 200 0.0 Treatment 0123456 0123456 1.59 mW / cm2

Value Tau 1 Tau 2 Control 4e+05 3000 3e+05

2000 2e+05

1000 1e+05

0e+00 0123456 0123456 Irradiation Length (hrs)

Figure S8: Photosynthetic kinetic measurements for cells irradiated at 1.59 mW/cm2. Cells irradiated at 1.59 mW/cm2 for 6 hours had Fv/Fm (top left), sigma (top right), Tau 1 (bottom left) and Tau 2 (bottom right) measurements taken half-hourly over the course of the experiment.

Black lines represent the measurements for the irradiated cells while the lighter grey line represents the measurements for the non-irradiated cells. Error bars represent the standard errors between biological replicates. Table S1: Raw Sequence Counts for All Sequenced Samples Time Treatment Raw Reads After UV Irradiation Control 25457076 After UV Irradiation Control 17878839 After UV Irradiation Experimental 15277762 After UV Irradiation Experimental 23884055 After Dark Recovery Control 17791716 After Dark Recovery Control 19049735 After Dark Recovery Experimental 18383317 After Dark Recovery Experimental 17659112

**After UV irradiation are samples sequenced directly after the UVB irradiation period ended **After Dark Recovery are samples sequenced after six hours of dark recovery following UVB irradiation Table S2: Rate of Change for Fv/Fm and Sigma at Five Different UVB intensities Fv/Fm Sigma UVB Intensity UVB Intensity (mW) Decay Constant Regression R-Squared (mW) Decay Constant Regression R-Squared 0.32 -0.017 Linear 0.785 0.32 12.09 Linear 0.929 0.64 -0.051 Linear 0.951 0.64 24.02 Linear 0.985 0.96 -0.076 Linear 0.982 0.96 43.64 Linear 0.952 1.28 -0.085 Linear 0.984 1.28 42.66 Linear 0.963 1.59 -0.091 Linear 0.982 1.59 28.3 Linear 0.976 Table S3: Photosynthetic Kinetics of Irraidated and Non-irradiated Cells Following UVB Irradiation at 0.32 mW/cm2 UVB Intensity FRRF Average of Standard Standard (mW) Measurement Time Replicates Deviation Error 0.32 Fv_Fm 6:00 0.357 0.011 0.008 0.32 Fv_Fm 7:00 0.373 0.014 0.010 0.32 Fv_Fm 8:00 0.356 0.026 0.018 0.32 Fv_Fm 9:00 0.343 0.027 0.019 0.32 Fv_Fm 10:00 0.331 0.043 0.031 0.32 Fv_Fm 11:00 0.298 0.038 0.027 0.32 Fv_Fm 12:00 0.256 0.059 0.042 0.32 Sig 6:00 207.530 0.622 0.440 0.32 Sig 7:00 211.735 5.197 3.675 0.32 Sig 8:00 217.410 7.792 5.510 0.32 Sig 9:00 225.985 4.547 3.215 0.32 Sig 10:00 252.665 24.798 17.535 0.32 Sig 11:00 258.095 34.330 24.275 0.32 Sig 12:00 277.675 33.694 23.825 0.32 Alp1QA 6:00 0.765 0.109 0.077 0.32 Alp1QA 7:00 0.721 0.040 0.029 0.32 Alp1QA 8:00 0.814 0.003 0.002 0.32 Alp1QA 9:00 0.760 0.076 0.054 0.32 Alp1QA 10:00 0.833 0.030 0.021 0.32 Alp1QA 11:00 0.615 0.213 0.151 0.32 Alp1QA 12:00 0.789 0.045 0.032 0.32 Tau1QA 6:00 785.500 23.335 16.500 0.32 Tau1QA 7:00 765.000 9.899 7.000 0.32 Tau1QA 8:00 851.500 20.506 14.500 0.32 Tau1QA 9:00 947.000 179.605 127.000 0.32 Tau1QA 10:00 756.000 29.698 21.000 0.32 Tau1QA 11:00 874.000 197.990 140.000 0.32 Tau1QA 12:00 993.000 52.326 37.000 0.32 Alp2QA 6:00 0.235 0.109 0.077 0.32 Alp2QA 7:00 0.280 0.040 0.029 0.32 Alp2QA 8:00 0.186 0.003 0.002 0.32 Alp2QA 9:00 0.241 0.076 0.054 0.32 Alp2QA 10:00 0.167 0.030 0.021 0.32 Alp2QA 11:00 0.386 0.213 0.151 0.32 Alp2QA 12:00 0.211 0.045 0.032 0.32 Tau2QA 6:00 6922.000 2791.658 1974.000 0.32 Tau2QA 7:00 5156.000 507.703 359.000 0.32 Tau2QA 8:00 7806.000 229.103 162.000 0.32 Tau2QA 9:00 6386.000 1064.903 753.000 0.32 Tau2QA 10:00 8176.500 1680.793 1188.500 0.32 Tau2QA 11:00 5125.500 1716.148 1213.500 0.32 Tau2QA 12:00 7821.000 2367.394 1674.000 0 Fv_Fm 6:00 0.514 0.005 0.003 0 Fv_Fm 7:00 0.509 0.019 0.013 0 Fv_Fm 8:00 0.515 0.004 0.003 0 Fv_Fm 9:00 0.505 0.016 0.012 0 Fv_Fm 10:00 0.495 0.008 0.006 0 Fv_Fm 11:00 0.496 0.013 0.009 0 Fv_Fm 12:00 0.472 0.002 0.002 0 Sig 6:00 178.845 14.559 10.295 0 Sig 7:00 174.600 4.879 3.450 0 Sig 8:00 167.525 0.983 0.695 0 Sig 9:00 171.060 4.172 2.950 0 Sig 10:00 172.725 0.205 0.145 0 Sig 11:00 164.745 7.361 5.205 0 Sig 12:00 173.315 6.710 4.745 0 Alp1QA 6:00 0.792 0.017 0.012 0 Alp1QA 7:00 0.811 0.011 0.008 0 Alp1QA 8:00 0.750 0.060 0.043 0 Alp1QA 9:00 0.777 0.075 0.053 0 Alp1QA 10:00 0.735 0.071 0.050 0 Alp1QA 11:00 0.757 0.049 0.035 0 Alp1QA 12:00 0.782 0.047 0.033 0 Tau1QA 6:00 677.000 33.941 24.000 0 Tau1QA 7:00 679.500 9.192 6.500 0 Tau1QA 8:00 698.500 3.536 2.500 0 Tau1QA 9:00 747.500 62.933 44.500 0 Tau1QA 10:00 675.000 38.184 27.000 0 Tau1QA 11:00 755.500 51.619 36.500 0 Tau1QA 12:00 691.000 76.368 54.000 0 Alp2QA 6:00 0.208 0.017 0.012 0 Alp2QA 7:00 0.189 0.011 0.008 0 Alp2QA 8:00 0.251 0.060 0.043 0 Alp2QA 9:00 0.223 0.075 0.053 0 Alp2QA 10:00 0.265 0.071 0.050 0 Alp2QA 11:00 0.244 0.049 0.035 0 Alp2QA 12:00 0.218 0.047 0.033 0 Tau2QA 6:00 6130.000 842.871 596.000 0 Tau2QA 7:00 7022.000 223.446 158.000 0 Tau2QA 8:00 5767.000 1091.773 772.000 0 Tau2QA 9:00 6723.000 1257.236 889.000 0 Tau2QA 10:00 5472.500 1281.985 906.500 0 Tau2QA 11:00 6092.500 334.462 236.500 0 Tau2QA 12:00 6449.500 1076.924 761.500 Table S4: Photosynthetic Kinetics of Irraidated and Non-irradiated Cells Following UVB Irradiation at 0.84 mW UVB Intensity FRRF Average of Standard Standard (mW) Measurement Time Replicates Deviation Error 0.64 Fv_Fm 7:00 0.436 0.013 0.009 0.64 Fv_Fm 8:00 0.407 0.025 0.018 0.64 Fv_Fm 9:00 0.347 0.041 0.029 0.64 Fv_Fm 10:00 0.281 0.046 0.033 0.64 Fv_Fm 11:00 0.220 0.033 0.023 0.64 Fv_Fm 12:00 0.156 0.036 0.026 0.64 Sig 6:00 186.160 0.580 0.410 0.64 Sig 7:00 201.145 5.480 3.875 0.64 Sig 8:00 225.885 0.460 0.325 0.64 Sig 9:00 263.065 3.896 2.755 0.64 Sig 10:00 285.545 13.895 9.825 0.64 Sig 11:00 298.665 1.803 1.275 0.64 Sig 12:00 325.455 1.492 1.055 0.64 Alp1QA 6:00 0.759 0.035 0.025 0.64 Alp1QA 7:00 0.734 0.100 0.071 0.64 Alp1QA 8:00 0.759 0.034 0.024 0.64 Alp1QA 9:00 0.839 0.035 0.025 0.64 Alp1QA 10:00 0.838 0.019 0.014 0.64 Alp1QA 11:00 0.883 0.040 0.029 0.64 Alp1QA 12:00 0.861 0.016 0.011 0.64 Tau1QA 6:00 807.000 2.828 2.000 0.64 Tau1QA 7:00 885.000 138.593 98.000 0.64 Tau1QA 8:00 870.000 113.137 80.000 0.64 Tau1QA 9:00 944.000 152.735 108.000 0.64 Tau1QA 10:00 1213.500 289.207 204.500 0.64 Tau1QA 11:00 1855.000 688.722 487.000 0.64 Tau1QA 12:00 1891.500 642.760 454.500 0.64 Alp2QA 6:00 0.242 0.035 0.025 0.64 Alp2QA 7:00 0.267 0.100 0.071 0.64 Alp2QA 8:00 0.241 0.034 0.024 0.64 Alp2QA 9:00 0.162 0.035 0.025 0.64 Alp2QA 10:00 0.163 0.019 0.014 0.64 Alp2QA 11:00 0.118 0.040 0.029 0.64 Alp2QA 12:00 0.139 0.016 0.011 0.64 Tau2QA 6:00 6109.500 125.158 88.500 0.64 Tau2QA 7:00 6331.500 873.277 617.500 0.64 Tau2QA 8:00 6429.500 221.324 156.500 0.64 Tau2QA 9:00 10721.500 1281.985 906.500 0.64 Tau2QA 10:00 14334.000 5067.127 3583.000 0.64 Tau2QA 11:00 25322.500 12612.664 8918.500 0.64 Tau2QA 12:00 27953.500 12957.732 9162.500 0 Fv_Fm 6:00 0.514 0.005 0.003 0 Fv_Fm 7:00 0.509 0.019 0.013 0 Fv_Fm 8:00 0.515 0.004 0.003 0 Fv_Fm 9:00 0.505 0.016 0.012 0 Fv_Fm 10:00 0.495 0.008 0.006 0 Fv_Fm 11:00 0.496 0.013 0.009 0 Fv_Fm 12:00 0.472 0.002 0.002 0 Sig 6:00 178.845 14.559 10.295 0 Sig 7:00 174.600 4.879 3.450 0 Sig 8:00 167.525 0.983 0.695 0 Sig 9:00 171.060 4.172 2.950 0 Sig 10:00 172.725 0.205 0.145 0 Sig 11:00 164.745 7.361 5.205 0 Sig 12:00 173.315 6.710 4.745 0 Alp1QA 6:00 0.792 0.017 0.012 0 Alp1QA 7:00 0.811 0.011 0.008 0 Alp1QA 8:00 0.750 0.060 0.043 0 Alp1QA 9:00 0.777 0.075 0.053 0 Alp1QA 10:00 0.735 0.071 0.050 0 Alp1QA 11:00 0.757 0.049 0.035 0 Alp1QA 12:00 0.782 0.047 0.033 0 Tau1QA 6:00 677.000 33.941 24.000 0 Tau1QA 7:00 679.500 9.192 6.500 0 Tau1QA 8:00 698.500 3.536 2.500 0 Tau1QA 9:00 747.500 62.933 44.500 0 Tau1QA 10:00 675.000 38.184 27.000 0 Tau1QA 11:00 755.500 51.619 36.500 0 Tau1QA 12:00 691.000 76.368 54.000 0 Alp2QA 6:00 0.208 0.017 0.012 0 Alp2QA 7:00 0.189 0.011 0.008 0 Alp2QA 8:00 0.251 0.060 0.043 0 Alp2QA 9:00 0.223 0.075 0.053 0 Alp2QA 10:00 0.265 0.071 0.050 0 Alp2QA 11:00 0.244 0.049 0.035 0 Alp2QA 12:00 0.218 0.047 0.033 0 Tau2QA 6:00 6130.000 842.871 596.000 0 Tau2QA 7:00 7022.000 223.446 158.000 0 Tau2QA 8:00 5767.000 1091.773 772.000 0 Tau2QA 9:00 6723.000 1257.236 889.000 0 Tau2QA 10:00 5472.500 1281.985 906.500 0 Tau2QA 11:00 6092.500 334.462 236.500 0 Tau2QA 12:00 6449.500 1076.924 761.500 Table S5: Photosynthetic Kinetics of Irraidated and Non-irradiated Cells Following UVB Irradiation at 1.26 mW UVB Intensity FRRF Average of Standard Standard (mW) Measurement Time Replicates Deviation Error 0.96 Fv_Fm 6:30 0.481 0.003 0.002 0.96 Fv_Fm 7:00 0.446 0.008 0.006 0.96 Fv_Fm 7:30 0.410 0.001 0.001 0.96 Fv_Fm 8:00 0.371 0.021 0.015 0.96 Fv_Fm 8:30 0.310 0.001 0.001 0.96 Fv_Fm 9:00 0.264 0.008 0.006 0.96 Fv_Fm 9:30 0.217 0.011 0.008 0.96 Fv_Fm 10:00 0.183 0.003 0.002 0.96 Fv_Fm 10:30 0.145 0.000 0.000 0.96 Fv_Fm 11:00 0.125 0.003 0.002 0.96 Fv_Fm 11:30 0.102 0.014 0.010 0.96 Fv_Fm 12:00 0.090 0.006 0.004 0.96 Sig 6:00 189.910 9.518 6.730 0.96 Sig 6:30 201.845 7.997 5.655 0.96 Sig 7:00 228.160 8.485 6.000 0.96 Sig 7:30 250.230 7.948 5.620 0.96 Sig 8:00 267.635 20.782 14.695 0.96 Sig 8:30 298.115 1.619 1.145 0.96 Sig 9:00 310.055 6.824 4.825 0.96 Sig 9:30 328.295 10.458 7.395 0.96 Sig 10:00 345.385 12.862 9.095 0.96 Sig 10:30 364.765 3.755 2.655 0.96 Sig 11:00 375.730 36.982 26.150 0.96 Sig 11:30 467.110 122.683 86.750 0.96 Sig 12:00 426.135 19.156 13.545 0.96 Alp1QA 6:00 0.674 0.035 0.025 0.96 Alp1QA 6:30 0.785 0.017 0.012 0.96 Alp1QA 7:00 0.784 0.023 0.016 0.96 Alp1QA 7:30 0.819 0.039 0.028 0.96 Alp1QA 8:00 0.890 0.067 0.048 0.96 Alp1QA 8:30 0.851 0.029 0.021 0.96 Alp1QA 9:00 0.858 0.033 0.023 0.96 Alp1QA 9:30 0.862 0.029 0.021 0.96 Alp1QA 10:00 0.853 0.009 0.007 0.96 Alp1QA 10:30 0.853 0.004 0.003 0.96 Alp1QA 11:00 0.861 0.009 0.007 0.96 Alp1QA 11:30 0.875 0.036 0.026 0.96 Alp1QA 12:00 0.844 0.009 0.007 0.96 Tau1QA 6:00 876.000 5.657 4.000 0.96 Tau1QA 6:30 855.500 103.945 73.500 0.96 Tau1QA 7:00 911.500 45.962 32.500 0.96 Tau1QA 7:30 1172.500 309.006 218.500 0.96 Tau1QA 8:00 1658.000 980.050 693.000 0.96 Tau1QA 8:30 1354.500 102.530 72.500 0.96 Tau1QA 9:00 1357.500 144.957 102.500 0.96 Tau1QA 9:30 1697.000 108.894 77.000 0.96 Tau1QA 10:00 1945.000 363.453 257.000 0.96 Tau1QA 10:30 2399.000 626.497 443.000 0.96 Tau1QA 11:00 2987.000 572.756 405.000 0.96 Tau1QA 11:30 4612.500 386.787 273.500 0.96 Tau1QA 12:00 4962.500 1177.333 832.500 0.96 Alp2QA 6:00 0.327 0.035 0.025 0.96 Alp2QA 6:30 0.215 0.017 0.012 0.96 Alp2QA 7:00 0.216 0.023 0.016 0.96 Alp2QA 7:30 0.182 0.039 0.028 0.96 Alp2QA 8:00 0.111 0.067 0.048 0.96 Alp2QA 8:30 0.150 0.029 0.021 0.96 Alp2QA 9:00 0.142 0.033 0.023 0.96 Alp2QA 9:30 0.139 0.029 0.021 0.96 Alp2QA 10:00 0.148 0.009 0.007 0.96 Alp2QA 10:30 0.148 0.004 0.003 0.96 Alp2QA 11:00 0.140 0.009 0.006 0.96 Alp2QA 11:30 0.126 0.036 0.026 0.96 Alp2QA 12:00 0.157 0.009 0.007 0.96 Tau2QA 6:00 4909.500 396.687 280.500 0.96 Tau2QA 6:30 6345.500 152.028 107.500 0.96 Tau2QA 7:00 7376.000 370.524 262.000 0.96 Tau2QA 7:30 9745.500 1863.226 1317.500 0.96 Tau2QA 8:00 20744.500 9399.570 6646.500 0.96 Tau2QA 8:30 17476.500 3990.204 2821.500 0.96 Tau2QA 9:00 22294.000 3326.230 2352.000 0.96 Tau2QA 9:30 28028.500 1446.033 1022.500 0.96 Tau2QA 10:00 31986.000 2467.803 1745.000 0.96 Tau2QA 10:30 44606.500 9900.202 7000.500 0.96 Tau2QA 11:00 63607.500 29390.893 20782.500 0.96 Tau2QA 11:30 126275.000 35759.804 25286.000 0.96 Tau2QA 12:00 135845.000 32026.280 22646.000 0 Fv_Fm 6:00 0.514 0.005 0.003 0 Fv_Fm 7:00 0.509 0.019 0.013 0 Fv_Fm 8:00 0.515 0.004 0.003 0 Fv_Fm 9:00 0.505 0.016 0.012 0 Fv_Fm 10:00 0.495 0.008 0.006 0 Fv_Fm 11:00 0.496 0.013 0.009 0 Fv_Fm 12:00 0.472 0.002 0.002 0 Sig 6:00 178.845 14.559 10.295 0 Sig 7:00 174.600 4.879 3.450 0 Sig 8:00 167.525 0.983 0.695 0 Sig 9:00 171.060 4.172 2.950 0 Sig 10:00 172.725 0.205 0.145 0 Sig 11:00 164.745 7.361 5.205 0 Sig 12:00 173.315 6.710 4.745 0 Alp1QA 6:00 0.792 0.017 0.012 0 Alp1QA 7:00 0.811 0.011 0.008 0 Alp1QA 8:00 0.750 0.060 0.043 0 Alp1QA 9:00 0.777 0.075 0.053 0 Alp1QA 10:00 0.735 0.071 0.050 0 Alp1QA 11:00 0.757 0.049 0.035 0 Alp1QA 12:00 0.782 0.047 0.033 0 Tau1QA 6:00 677.000 33.941 24.000 0 Tau1QA 7:00 679.500 9.192 6.500 0 Tau1QA 8:00 698.500 3.536 2.500 0 Tau1QA 9:00 747.500 62.933 44.500 0 Tau1QA 10:00 675.000 38.184 27.000 0 Tau1QA 11:00 755.500 51.619 36.500 0 Tau1QA 12:00 691.000 76.368 54.000 0 Alp2QA 6:00 0.208 0.017 0.012 0 Alp2QA 7:00 0.189 0.011 0.008 0 Alp2QA 8:00 0.251 0.060 0.043 0 Alp2QA 9:00 0.223 0.075 0.053 0 Alp2QA 10:00 0.265 0.071 0.050 0 Alp2QA 11:00 0.244 0.049 0.035 0 Alp2QA 12:00 0.218 0.047 0.033 0 Tau2QA 6:00 6130.000 842.871 596.000 0 Tau2QA 7:00 7022.000 223.446 158.000 0 Tau2QA 8:00 5767.000 1091.773 772.000 0 Tau2QA 9:00 6723.000 1257.236 889.000 0 Tau2QA 10:00 5472.500 1281.985 906.500 0 Tau2QA 11:00 6092.500 334.462 236.500 0 Tau2QA 12:00 6449.500 1076.924 761.500 Table S6: Photosynthetic Kinetics of Irraidated and Non-irradiated Cells Following UVB Irradiation at 1.68 mW UVB Intensity FRRF Average of Standard Standard (mW) Measurement Time Replicates Deviation Error 1.28 Fv_Fm 6:30 0.467 0.035 0.025 1.28 Fv_Fm 7:00 0.435 0.010 0.007 1.28 Fv_Fm 7:30 0.384 0.002 0.002 1.28 Fv_Fm 8:00 0.322 0.007 0.005 1.28 Fv_Fm 8:30 0.260 0.005 0.004 1.28 Fv_Fm 9:00 0.231 0.032 0.023 1.28 Fv_Fm 9:30 0.167 0.001 0.001 1.28 Fv_Fm 10:00 0.140 0.006 0.004 1.28 Fv_Fm 10:30 0.108 0.007 0.005 1.28 Fv_Fm 11:00 0.083 0.002 0.001 1.28 Fv_Fm 11:30 0.049 0.001 0.001 1.28 Fv_Fm 12:00 0.023 0.004 0.003 1.28 Sig 6:00 177.735 1.280 0.905 1.28 Sig 6:30 229.480 51.916 36.710 1.28 Sig 7:00 222.725 5.268 3.725 1.28 Sig 7:30 244.510 0.368 0.260 1.28 Sig 8:00 266.205 2.256 1.595 1.28 Sig 8:30 282.910 3.394 2.400 1.28 Sig 9:00 290.215 16.242 11.485 1.28 Sig 9:30 330.495 0.318 0.225 1.28 Sig 10:00 366.605 4.179 2.955 1.28 Sig 10:30 385.190 4.709 3.330 1.28 Sig 11:00 357.235 7.177 5.075 1.28 Sig 11:30 347.940 19.233 13.600 1.28 Sig 12:00 283.420 33.630 23.780 1.28 Alp1QA 6:00 0.653 0.055 0.039 1.28 Alp1QA 6:30 0.734 0.004 0.003 1.28 Alp1QA 7:00 0.807 0.025 0.018 1.28 Alp1QA 7:30 0.832 0.003 0.002 1.28 Alp1QA 8:00 0.832 0.005 0.004 1.28 Alp1QA 8:30 0.823 0.005 0.004 1.28 Alp1QA 9:00 0.861 0.044 0.031 1.28 Alp1QA 9:30 0.854 0.008 0.006 1.28 Alp1QA 10:00 0.856 0.009 0.007 1.28 Alp1QA 10:30 0.831 0.006 0.005 1.28 Alp1QA 11:00 0.834 0.001 0.001 1.28 Alp1QA 11:30 0.812 0.016 0.011 1.28 Alp1QA 12:00 0.786 0.074 0.053 1.28 Tau1QA 6:00 898.500 9.192 6.500 1.28 Tau1QA 6:30 820.500 193.040 136.500 1.28 Tau1QA 7:00 947.000 80.610 57.000 1.28 Tau1QA 7:30 1089.000 1.414 1.000 1.28 Tau1QA 8:00 1257.000 66.468 47.000 1.28 Tau1QA 8:30 1464.500 54.447 38.500 1.28 Tau1QA 9:00 2282.500 656.902 464.500 1.28 Tau1QA 9:30 2686.500 184.555 130.500 1.28 Tau1QA 10:00 3740.500 224.153 158.500 1.28 Tau1QA 10:30 4903.000 179.605 127.000 1.28 Tau1QA 11:00 5351.000 127.279 90.000 1.28 Tau1QA 11:30 6164.000 2207.587 1561.000 1.28 Tau1QA 12:00 7466.500 1652.509 1168.500 1.28 Alp2QA 6:00 0.347 0.055 0.039 1.28 Alp2QA 6:30 0.266 0.004 0.003 1.28 Alp2QA 7:00 0.194 0.025 0.018 1.28 Alp2QA 7:30 0.168 0.003 0.002 1.28 Alp2QA 8:00 0.169 0.005 0.003 1.28 Alp2QA 8:30 0.178 0.005 0.004 1.28 Alp2QA 9:00 0.139 0.044 0.031 1.28 Alp2QA 9:30 0.147 0.008 0.006 1.28 Alp2QA 10:00 0.145 0.009 0.006 1.28 Alp2QA 10:30 0.170 0.006 0.004 1.28 Alp2QA 11:00 0.166 0.001 0.001 1.28 Alp2QA 11:30 0.188 0.016 0.011 1.28 Alp2QA 12:00 0.215 0.074 0.053 1.28 Tau2QA 6:00 5235.000 401.637 284.000 1.28 Tau2QA 6:30 6571.500 481.540 340.500 1.28 Tau2QA 7:00 8653.000 872.570 617.000 1.28 Tau2QA 7:30 12906.500 540.937 382.500 1.28 Tau2QA 8:00 16631.500 1887.268 1334.500 1.28 Tau2QA 8:30 22497.500 569.221 402.500 1.28 Tau2QA 9:00 41434.500 15651.809 11067.500 1.28 Tau2QA 9:30 74875.500 13787.875 9749.500 1.28 Tau2QA 10:00 123101.000 654.781 463.000 1.28 Tau2QA 10:30 141549.000 5096.826 3604.000 1.28 Tau2QA 11:00 130252.000 18407.404 13016.000 1.28 Tau2QA 11:30 142626.000 80447.538 56885.000 1.28 Tau2QA 12:00 106647.500 23022.690 16279.500 0 Fv_Fm 6:00 0.514 0.005 0.003 0 Fv_Fm 7:00 0.509 0.019 0.013 0 Fv_Fm 8:00 0.515 0.004 0.003 0 Fv_Fm 9:00 0.505 0.016 0.012 0 Fv_Fm 10:00 0.495 0.008 0.006 0 Fv_Fm 11:00 0.496 0.013 0.009 0 Fv_Fm 12:00 0.472 0.002 0.002 0 Sig 6:00 178.845 14.559 10.295 0 Sig 7:00 174.600 4.879 3.450 0 Sig 8:00 167.525 0.983 0.695 0 Sig 9:00 171.060 4.172 2.950 0 Sig 10:00 172.725 0.205 0.145 0 Sig 11:00 164.745 7.361 5.205 0 Sig 12:00 173.315 6.710 4.745 0 Alp1QA 6:00 0.792 0.017 0.012 0 Alp1QA 7:00 0.811 0.011 0.008 0 Alp1QA 8:00 0.750 0.060 0.043 0 Alp1QA 9:00 0.777 0.075 0.053 0 Alp1QA 10:00 0.735 0.071 0.050 0 Alp1QA 11:00 0.757 0.049 0.035 0 Alp1QA 12:00 0.782 0.047 0.033 0 Tau1QA 6:00 677.000 33.941 24.000 0 Tau1QA 7:00 679.500 9.192 6.500 0 Tau1QA 8:00 698.500 3.536 2.500 0 Tau1QA 9:00 747.500 62.933 44.500 0 Tau1QA 10:00 675.000 38.184 27.000 0 Tau1QA 11:00 755.500 51.619 36.500 0 Tau1QA 12:00 691.000 76.368 54.000 0 Alp2QA 6:00 0.208 0.017 0.012 0 Alp2QA 7:00 0.189 0.011 0.008 0 Alp2QA 8:00 0.251 0.060 0.043 0 Alp2QA 9:00 0.223 0.075 0.053 0 Alp2QA 10:00 0.265 0.071 0.050 0 Alp2QA 11:00 0.244 0.049 0.035 0 Alp2QA 12:00 0.218 0.047 0.033 0 Tau2QA 6:00 6130.000 842.871 596.000 0 Tau2QA 7:00 7022.000 223.446 158.000 0 Tau2QA 8:00 5767.000 1091.773 772.000 0 Tau2QA 9:00 6723.000 1257.236 889.000 0 Tau2QA 10:00 5472.500 1281.985 906.500 0 Tau2QA 11:00 6092.500 334.462 236.500 0 Tau2QA 12:00 6449.500 1076.924 761.500 Table S7: Photosynthetic Kinetics of Irraidated and Non-irradiated Cells Following UVB Irradiation at 2.10 mW UVB Intensity FRRF Average of Standard Standard (mW) Measurement Time Replicates Deviation Error 1.59 Fv_Fm 6:30 0.481 0.014 0.010 1.59 Fv_Fm 7:00 0.457 0.005 0.004 1.59 Fv_Fm 7:30 0.407 0.005 0.004 1.59 Fv_Fm 8:00 0.354 0.005 0.004 1.59 Fv_Fm 8:30 0.281 0.016 0.012 1.59 Fv_Fm 9:00 0.222 0.024 0.017 1.59 Fv_Fm 9:30 0.170 0.012 0.009 1.59 Fv_Fm 10:00 0.127 0.006 0.005 1.59 Fv_Fm 10:30 0.094 0.003 0.002 1.59 Fv_Fm 11:00 0.066 0.011 0.008 1.59 Fv_Fm 11:30 0.034 0.009 0.006 1.59 Fv_Fm 12:00 0.018 0.011 0.008 1.59 Sig 6:00 161.250 2.871 2.030 1.59 Sig 6:30 164.535 2.878 2.035 1.59 Sig 7:00 188.315 2.072 1.465 1.59 Sig 7:30 209.005 0.912 0.645 1.59 Sig 8:00 223.415 5.848 4.135 1.59 Sig 8:30 240.280 0.580 0.410 1.59 Sig 9:00 248.590 24.282 17.170 1.59 Sig 9:30 262.825 25.463 18.005 1.59 Sig 10:00 276.630 3.705 2.620 1.59 Sig 10:30 277.045 0.912 0.645 1.59 Sig 11:00 270.860 23.533 16.640 1.59 Sig 11:30 225.550 26.460 18.710 1.59 Sig 12:00 410.790 235.269 166.360 1.59 Alp1QA 6:00 0.775 0.010 0.007 1.59 Alp1QA 6:30 0.762 0.047 0.033 1.59 Alp1QA 7:00 0.823 0.002 0.002 1.59 Alp1QA 7:30 0.840 0.000 0.000 1.59 Alp1QA 8:00 0.823 0.023 0.017 1.59 Alp1QA 8:30 0.828 0.001 0.001 1.59 Alp1QA 9:00 0.808 0.005 0.004 1.59 Alp1QA 9:30 0.803 0.011 0.008 1.59 Alp1QA 10:00 0.793 0.018 0.013 1.59 Alp1QA 10:30 0.709 0.047 0.034 1.59 Alp1QA 11:00 0.722 0.039 0.028 1.59 Alp1QA 11:30 0.308 0.350 0.248 1.59 Alp1QA 12:00 0.684 0.248 0.176 1.59 Tau1QA 6:00 699.500 21.920 15.500 1.59 Tau1QA 6:30 728.000 16.971 12.000 1.59 Tau1QA 7:00 723.500 6.364 4.500 1.59 Tau1QA 7:30 789.000 49.497 35.000 1.59 Tau1QA 8:00 938.500 105.359 74.500 1.59 Tau1QA 8:30 1047.500 96.874 68.500 1.59 Tau1QA 9:00 1575.500 270.822 191.500 1.59 Tau1QA 9:30 1955.500 241.123 170.500 1.59 Tau1QA 10:00 2828.500 822.365 581.500 1.59 Tau1QA 10:30 2624.500 495.682 350.500 1.59 Tau1QA 11:00 3259.500 160.513 113.500 1.59 Tau1QA 11:30 1051.500 972.272 687.500 1.59 Tau1QA 12:00 1651.500 1306.026 923.500 1.59 Alp2QA 6:00 0.225 0.010 0.007 1.59 Alp2QA 6:30 0.238 0.047 0.033 1.59 Alp2QA 7:00 0.178 0.002 0.002 1.59 Alp2QA 7:30 0.160 0.000 0.000 1.59 Alp2QA 8:00 0.178 0.023 0.017 1.59 Alp2QA 8:30 0.173 0.001 0.001 1.59 Alp2QA 9:00 0.193 0.005 0.004 1.59 Alp2QA 9:30 0.197 0.011 0.008 1.59 Alp2QA 10:00 0.208 0.018 0.013 1.59 Alp2QA 10:30 0.292 0.047 0.034 1.59 Alp2QA 11:00 0.279 0.039 0.028 1.59 Alp2QA 11:30 0.693 0.350 0.248 1.59 Alp2QA 12:00 0.317 0.248 0.176 1.59 Tau2QA 6:00 6298.000 417.193 295.000 1.59 Tau2QA 6:30 5818.500 181.726 128.500 1.59 Tau2QA 7:00 8069.000 340.825 241.000 1.59 Tau2QA 7:30 11391.500 1289.056 911.500 1.59 Tau2QA 8:00 15167.500 1916.966 1355.500 1.59 Tau2QA 8:30 21296.500 5417.145 3830.500 1.59 Tau2QA 9:00 27326.000 7158.749 5062.000 1.59 Tau2QA 9:30 39812.500 8048.996 5691.500 1.59 Tau2QA 10:00 62848.500 12920.962 9136.500 1.59 Tau2QA 10:30 48068.000 16796.614 11877.000 1.59 Tau2QA 11:00 66448.500 10315.981 7294.500 1.59 Tau2QA 11:30 16962.500 6043.642 4273.500 1.59 Tau2QA 12:00 219678.500 255013.111 180321.500 0 Fv_Fm 6:00 0.514 0.005 0.003 0 Fv_Fm 7:00 0.509 0.019 0.013 0 Fv_Fm 8:00 0.515 0.004 0.003 0 Fv_Fm 9:00 0.505 0.016 0.012 0 Fv_Fm 10:00 0.495 0.008 0.006 0 Fv_Fm 11:00 0.496 0.013 0.009 0 Fv_Fm 12:00 0.472 0.002 0.002 0 Sig 6:00 178.845 14.559 10.295 0 Sig 7:00 174.600 4.879 3.450 0 Sig 8:00 167.525 0.983 0.695 0 Sig 9:00 171.060 4.172 2.950 0 Sig 10:00 172.725 0.205 0.145 0 Sig 11:00 164.745 7.361 5.205 0 Sig 12:00 173.315 6.710 4.745 0 Alp1QA 6:00 0.792 0.017 0.012 0 Alp1QA 7:00 0.811 0.011 0.008 0 Alp1QA 8:00 0.750 0.060 0.043 0 Alp1QA 9:00 0.777 0.075 0.053 0 Alp1QA 10:00 0.735 0.071 0.050 0 Alp1QA 11:00 0.757 0.049 0.035 0 Alp1QA 12:00 0.782 0.047 0.033 0 Tau1QA 6:00 677.000 33.941 24.000 0 Tau1QA 7:00 679.500 9.192 6.500 0 Tau1QA 8:00 698.500 3.536 2.500 0 Tau1QA 9:00 747.500 62.933 44.500 0 Tau1QA 10:00 675.000 38.184 27.000 0 Tau1QA 11:00 755.500 51.619 36.500 0 Tau1QA 12:00 691.000 76.368 54.000 0 Alp2QA 6:00 0.208 0.017 0.012 0 Alp2QA 7:00 0.189 0.011 0.008 0 Alp2QA 8:00 0.251 0.060 0.043 0 Alp2QA 9:00 0.223 0.075 0.053 0 Alp2QA 10:00 0.265 0.071 0.050 0 Alp2QA 11:00 0.244 0.049 0.035 0 Alp2QA 12:00 0.218 0.047 0.033 0 Tau2QA 6:00 6130.000 842.871 596.000 0 Tau2QA 7:00 7022.000 223.446 158.000 0 Tau2QA 8:00 5767.000 1091.773 772.000 0 Tau2QA 9:00 6723.000 1257.236 889.000 0 Tau2QA 10:00 5472.500 1281.985 906.500 0 Tau2QA 11:00 6092.500 334.462 236.500 0 Tau2QA 12:00 6449.500 1076.924 761.500 Table S8: Transcipts Mapping to T. pseudonana Photosynthetic Homlogs with Gene Expression Directly After UVB Irradiation Probability of Evalue of Matching p-value of Matching Fold Change Compared to Standard Error p-value of Fold Transcript Name T. pseudonana Hit ID Matching Homolog Homolog Homolog Homolog Hit Name Non-irradiated Cells of Fold Change Change Locus_11856_Transcript_1/1_Confidence_1.000_Length_2037 tps:THAPSDRAFT_bd1048 0.987 2.70E-12 9.80E-14 photosystem I subunit VII -4.051 1.057 1.42E-03 Locus_12342_Transcript_1/2_Confidence_0.857_Length_761 tps:THAPSDRAFT_34554 1 5.00E-44 1.80E-45 psbW, photosystem II 13kDa protein -3.911 0.995 1.02E-03 Locus_154_Transcript_1/1_Confidence_1.000_Length_2943 tps:THAPSDRAFT_bd467 1 6.70E-66 2.40E-67 petB, cytochrome b6 -4.451 1.116 8.47E-04 Locus_18172_Transcript_2/2_Confidence_0.500_Length_584 tps:THAPSDRAFT_25892 0.989 3.50E-12 1.30E-13 ferredoxin--NADP+ reductase -2.857 0.788 2.69E-03 Locus_23689_Transcript_2/3_Confidence_0.500_Length_368 tps:THAPSDRAFT_2848 0.934 7.90E-05 2.80E-06 photosystem II PsbU protein 4.065 0.920 1.69E-04 Locus_24_Transcript_10/10_Confidence_0.386_Length_1974 tps:THAPSDRAFT_bd1736 1 8.20E-64 2.90E-65 photosystem II P680 reaction center D1 protein -2.926 0.876 6.13E-03 Locus_24_Transcript_2/10_Confidence_0.341_Length_1926 tps:THAPSDRAFT_bd1736 1 2.80E-63 9.90E-65 photosystem II P680 reaction center D1 protein -3.471 0.895 1.21E-03 Locus_24_Transcript_3/10_Confidence_0.341_Length_1926 tps:THAPSDRAFT_bd1545 1 2.00E-157 6.00E-159 PSBC, photosystem II CP43 chlorophyll apoprotein -3.187 0.877 2.64E-03 Locus_24_Transcript_7/10_Confidence_0.386_Length_2030 tps:THAPSDRAFT_bd1545 1 4.00E-157 1.00E-158 PSBC, photosystem II CP43 chlorophyll apoprotein -3.194 0.835 1.45E-03 Locus_28196_Transcript_2/2_Confidence_0.750_Length_1403 tps:THAPSDRAFT_bd1039 0.934 1.30E-04 4.80E-06 PsbV, photosystem II cytochrome c550 5.189 1.596 7.67E-03 Locus_288_Transcript_3/6_Confidence_0.389_Length_1033 tps:THAPSDRAFT_bd573 1 2.00E-118 8.00E-120 apocytochrome f -3.536 0.983 2.95E-03 Locus_288_Transcript_4/6_Confidence_0.444_Length_1114 tps:THAPSDRAFT_bd573 1 8.00E-120 3.00E-121 apocytochrome f -3.473 1.061 7.27E-03 Locus_288_Transcript_5/6_Confidence_0.278_Length_719 tps:THAPSDRAFT_bd573 1 5.70E-38 2.00E-39 apocytochrome f -3.736 1.147 7.57E-03 Locus_288_Transcript_6/6_Confidence_0.389_Length_1033 tps:THAPSDRAFT_bd573 1 3.00E-118 1.00E-119 apocytochrome f -3.474 1.016 4.93E-03 Locus_32639_Transcript_1/1_Confidence_1.000_Length_484 tps:THAPSDRAFT_bd1048 0.992 8.00E-15 2.80E-16 photosystem I subunit VII 5.433 1.545 3.76E-03 Locus_3551_Transcript_10/10_Confidence_0.333_Length_1187 tps:THAPSDRAFT_bd1258 0.904 5.50E-05 2.00E-06 petF_1, ferredoxin -3.722 0.860 2.37E-04 Locus_389_Transcript_1/10_Confidence_0.276_Length_2836 tps:THAPSDRAFT_bd1611 1 0.00E+00 0.00E+00 photosystem I P700 chlorophyll a apoprotein A2 -3.333 1.007 6.58E-03 Locus_389_Transcript_10/10_Confidence_0.345_Length_4127 tps:THAPSDRAFT_bd1611 1 0.00E+00 0.00E+00 photosystem I P700 chlorophyll a apoprotein A2 -3.407 0.975 4.01E-03 Locus_389_Transcript_2/10_Confidence_0.190_Length_2256 tps:THAPSDRAFT_bd1611 1 1.10E-40 3.80E-42 photosystem I P700 chlorophyll a apoprotein A2 -3.256 0.826 9.83E-04 Locus_389_Transcript_3/10_Confidence_0.190_Length_2256 tps:THAPSDRAFT_bd1611 1 0.00E+00 0.00E+00 photosystem I P700 chlorophyll a apoprotein A2 -3.499 0.974 2.99E-03 Locus_389_Transcript_4/10_Confidence_0.138_Length_2057 tps:THAPSDRAFT_bd1611 1 1.10E-68 3.90E-70 photosystem I P700 chlorophyll a apoprotein A2 -3.320 0.850 1.11E-03 Locus_389_Transcript_5/10_Confidence_0.138_Length_2057 tps:THAPSDRAFT_bd1611 1 0.00E+00 0.00E+00 photosystem I P700 chlorophyll a apoprotein A2 -3.353 0.847 9.22E-04 Locus_3983_Transcript_1/4_Confidence_0.375_Length_1188 tps:THAPSDRAFT_bd1039 0.998 9.20E-22 3.30E-23 PsbV, photosystem II cytochrome c550 -4.117 1.181 4.09E-03 Locus_4113_Transcript_1/2_Confidence_0.750_Length_1213 tps:THAPSDRAFT_20603 0.957 4.80E-06 1.70E-07 photosystem II oxygen-evolving enhancer protein 3 -3.330 0.965 4.56E-03 Locus_484_Transcript_3/4_Confidence_0.750_Length_1013 tps:THAPSDRAFT_25892 0.999 5.80E-26 2.10E-27 ferredoxin--NADP+ reductase -1.952 0.603 8.01E-03 Locus_5607_Transcript_1/7_Confidence_0.444_Length_664 tps:THAPSDRAFT_25892 0.985 6.00E-11 2.10E-12 ferredoxin--NADP+ reductase -2.282 0.687 6.42E-03 Locus_5607_Transcript_5/7_Confidence_0.444_Length_602 tps:THAPSDRAFT_bd1258 0.988 2.70E-12 9.80E-14 petF_1, ferredoxin -2.600 0.781 6.27E-03 Locus_5740_Transcript_1/1_Confidence_1.000_Length_1401 tps:THAPSDRAFT_25892 1 1.70E-30 6.00E-32 ferredoxin--NADP+ reductase 4.645 0.965 3.10E-05 Locus_582_Transcript_12/18_Confidence_0.246_Length_641 tps:THAPSDRAFT_270210 1 1.10E-32 3.90E-34 PsbO, photosystem II oxygen-evolving enhancer protein -1.979 0.461 2.80E-04 Locus_582_Transcript_16/18_Confidence_0.320_Length_999 tps:THAPSDRAFT_270210 0.998 3.60E-25 1.30E-26 PsbO, photosystem II oxygen-evolving enhancer protein -2.148 0.347 2.25E-08 Locus_600_Transcript_10/10_Confidence_0.321_Length_2599 tps:THAPSDRAFT_bd2073 1 1.00E-246 3.00E-248 photosystem II CP47 chlorophyll apoprotein -3.820 1.038 2.30E-03 Locus_600_Transcript_5/10_Confidence_0.286_Length_1282 tps:THAPSDRAFT_bd1313 1 3.60E-44 1.30E-45 photosystem II PsbH protein -3.318 0.890 1.96E-03 Locus_600_Transcript_6/10_Confidence_0.286_Length_1282 tps:THAPSDRAFT_bd2073 1 3.90E-51 1.40E-52 photosystem II CP47 chlorophyll apoprotein -3.293 0.968 5.17E-03 Locus_600_Transcript_7/10_Confidence_0.321_Length_1271 tps:THAPSDRAFT_bd2073 1 2.80E-48 1.00E-49 photosystem II CP47 chlorophyll apoprotein -3.338 0.883 1.66E-03 Locus_7060_Transcript_1/1_Confidence_1.000_Length_879 tps:THAPSDRAFT_bd467 1 1.90E-74 6.90E-76 petB, cytochrome b6 2.749 0.822 6.06E-03 Locus_745_Transcript_11/12_Confidence_0.283_Length_605 tps:THAPSDRAFT_270242 0.997 1.30E-20 4.70E-22 PsbM, photosystem II PsbM protein -2.244 0.436 6.50E-06 Locus_745_Transcript_12/12_Confidence_0.261_Length_381 tps:THAPSDRAFT_270242 0.998 3.90E-23 1.40E-24 PsbM, photosystem II PsbM protein -2.610 0.638 5.80E-04 Locus_7991_Transcript_1/2_Confidence_0.750_Length_7608 tps:THAPSDRAFT_34554 1 2.90E-55 1.00E-56 psbW, photosystem II 13kDa protein -2.752 0.761 2.77E-03 Locus_7991_Transcript_2/2_Confidence_0.750_Length_7608 tps:THAPSDRAFT_34554 1 2.70E-55 9.60E-57 psbW, photosystem II 13kDa protein -2.776 0.849 7.31E-03 Locus_8331_Transcript_1/1_Confidence_1.000_Length_578 tps:THAPSDRAFT_bd467 0.959 1.60E-04 5.60E-06 petB, cytochrome b6 -4.205 1.244 5.51E-03 Locus_894_Transcript_1/9_Confidence_0.231_Length_1996 tps:THAPSDRAFT_bd1339 1 1.30E-93 4.70E-95 photosystem I subunit II -3.110 0.941 6.69E-03 Locus_894_Transcript_2/9_Confidence_0.231_Length_1996 tps:THAPSDRAFT_bd1339 1 1.30E-93 4.70E-95 photosystem I subunit II -3.556 0.905 1.03E-03 Locus_894_Transcript_3/9_Confidence_0.154_Length_721 tps:THAPSDRAFT_bd1342 1 2.10E-78 7.70E-80 photosystem I subunit XI -3.675 0.698 3.55E-06 Locus_894_Transcript_5/9_Confidence_0.154_Length_1640 tps:THAPSDRAFT_bd1339 1 4.30E-95 1.60E-96 photosystem I subunit II -3.560 0.998 3.24E-03 Locus_894_Transcript_6/9_Confidence_0.154_Length_1640 tps:THAPSDRAFT_bd1339 1 4.30E-95 1.60E-96 photosystem I subunit II -3.662 0.828 1.64E-04 Locus_9690_Transcript_1/2_Confidence_0.750_Length_1749 tps:THAPSDRAFT_bd573 0.921 2.90E-04 1.00E-05 apocytochrome f 3.205 0.637 1.13E-05 Locus_988_Transcript_3/10_Confidence_0.232_Length_560 tps:THAPSDRAFT_2848 0.992 1.50E-14 5.40E-16 photosystem II PsbU protein -2.128 0.458 6.46E-05 Locus_988_Transcript_5/10_Confidence_0.250_Length_660 tps:THAPSDRAFT_2848 0.998 5.90E-23 2.10E-24 photosystem II PsbU protein -2.066 0.556 2.03E-03 Locus_988_Transcript_8/10_Confidence_0.357_Length_648 tps:THAPSDRAFT_2848 0.986 7.60E-12 2.70E-13 photosystem II PsbU protein -1.999 0.518 1.31E-03

**Fold Change is calculated as an average of the replicates Table S9: Rate of Change Tau 1 at Five Different UVB intensities UVB Intensity (mW) Rate ConstantRegression R-Squared 0.32 26.61 Linear 0.27 0.64 197.8 Linear 0.784 0.96 617.6 Linear 0.763 1.28 1114 Linear 0.892 1.59 304 Linear 0.396 Table S10: Rate of Change Tau 2 at Five Different UVB intensities UVB Intensity (mW) Rate ConstantRegression R-Squared 0.32 107.4 Linear 0.695 0.64 3979.2 Linear 0.839 0.96 19207 Linear 0.707 1.28 26664 Linear 0.816 1.59 19708 Linear 0.4 Table S11: Transcipts Mapping to T. pseudonana Glycolysis Homlogs with Gene Expression Directly After UVB Irradiation

Probability of Matching Evalue of Matching p-value of Matching Fold Change Compared Standard Error of Fold p-value of Transcript Name T. pseudonana Hit ID Homolog Homolog Homolog Homolog Hit Name to Non-irradiated Cells Change Fold Change Locus_10366_Transcript_2_8_Confidence_0.308_Length_377 tps:THAPSDRAFT_22345 1 1.90E-37 1.30E-38 PYK2 pyruvate kinase (EC:2.7.1.40) 3.694 0.861 2.78E-04 Locus_10366_Transcript_5/8_Confidence_0.385_Length_1427 tps:THAPSDRAFT_22345 1 3.00E-108 2.00E-109 PYK2 pyruvate kinase (EC:2.7.1.40) 3.461 0.810 2.93E-04 Locus_11892_Transcript_3/3_Confidence_0.700_Length_694 tps:THAPSDRAFT_28239 0.973 2.10E-07 1.40E-08 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) -3.215 0.914 3.73E-03 Locus_13106_Transcript_1/1_Confidence_1.000_Length_909 tps:THAPSDRAFT_270301 0.98 7.30E-09 4.90E-10 hypothetical protein glucose-6-phosphate isomerase (EC:5.3.1.9) 6.897 1.428 2.88E-05 Locus_13428_Transcript_1/4_Confidence_0.429_Length_1328 tps:THAPSDRAFT_40391 1 1.90E-69 1.30E-70 ENO1 alpha enolase (EC:4.2.1.11) -2.923 0.928 9.93E-03 Locus_13689_Transcript_1/2_Confidence_0.167_Length_1092 tps:THAPS_30380 0.963 4.10E-05 2.70E-06 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 2.501 0.682 2.38E-03 Locus_13689_Transcript_2/2_Confidence_0.917_Length_1116 tps:THAPS_30380 0.964 3.70E-05 2.50E-06 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 3.523 0.658 2.26E-06 Locus_1393_Transcript_10/10_Confidence_0.275_Length_812 tps:THAPSDRAFT_31232 0.986 5.10E-11 3.40E-12 PFK1 6-phosphofructokinase (EC:2.7.1.90) -2.396 0.609 1.01E-03 Locus_1393_Transcript_9/10_Confidence_0.275_Length_812 tps:THAPSDRAFT_31232 0.986 5.20E-11 3.40E-12 PFK1 6-phosphofructokinase (EC:2.7.1.90) -2.364 0.633 1.94E-03 Locus_14774_Transcript_1/1_Confidence_1.000_Length_1025 tps:THAPSDRAFT_15858 0.935 1.70E-03 1.20E-04 hypothetical protein aldose 1-epimerase (EC:5.1.3.3) 4.439 0.910 2.34E-05 Locus_1616_Transcript_1/1_Confidence_1.000_Length_1238 tps:THAPSDRAFT_28239 0.931 1.20E-04 8.00E-06 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) -4.284 1.049 5.98E-04 Locus_17185_Transcript_3/5_Confidence_0.375_Length_615 tps:THAPS_30380 0.938 1.40E-04 9.40E-06 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 5.599 1.690 6.56E-03 Locus_19011_Transcript_1/1_Confidence_1.000_Length_918 tps:THAPSDRAFT_22345 1 2.50E-70 1.60E-71 PYK2 pyruvate kinase (EC:2.7.1.40) -3.661 1.003 2.50E-03 Locus_22662_Transcript_1/1_Confidence_1.000_Length_1164 tps:THAPSDRAFT_17651 1 1.30E-36 8.90E-38 hypothetical protein 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (EC:5.4.2.11) 1.730 0.478 2.74E-03 Locus_26246_Transcript_1/1_Confidence_0.556_Length_186 tps:THAPS_30380 0.961 3.30E-06 2.20E-07 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 3.934 1.219 8.15E-03 Locus_27646_Transcript_1/1_Confidence_1.000_Length_189 tps:THAPSDRAFT_28239 0.993 2.20E-16 1.50E-17 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 2.799 0.864 7.93E-03 Locus_30184_Transcript_1/1_Confidence_1.000_Length_1031 tps:THAPSDRAFT_28239 0.925 2.20E-04 1.40E-05 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 6.010 0.968 1.98E-08 Locus_30794_Transcript_1/1_Confidence_1.000_Length_201 tps:THAPSDRAFT_28239 0.991 1.40E-14 9.20E-16 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 2.985 0.536 7.42E-07 Locus_3092_Transcript_2/2_Confidence_0.750_Length_1430 tps:THAPSDRAFT_23958 1 2.80E-35 1.90E-36 hypothetical protein glucose-6-phosphate 1-epimerase (EC:5.1.3.15) -4.927 1.176 4.08E-04 Locus_4005_Transcript_1/2_Confidence_0.750_Length_1946 tps:THAPS_30380 0.956 7.70E-05 5.10E-06 TPI2 triose-phosphate isomerase (EC:5.3.1.1) -3.245 0.865 1.84E-03 Locus_417_Transcript_1/2_Confidence_0.750_Length_885 tps:THAPS_30380 1 1.60E-46 1.10E-47 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 5.615 1.278 1.85E-04 Locus_417_Transcript_2/2_Confidence_0.500_Length_822 tps:THAPS_30380 1 2.30E-47 1.60E-48 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 4.743 1.181 7.66E-04 Locus_4852_Transcript_8/8_Confidence_0.417_Length_664 tps:THAPS_30380 0.916 9.80E-05 6.50E-06 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 3.379 0.874 1.26E-03 Locus_4927_Transcript_10/10_Confidence_0.346_Length_1172 tps:THAPSDRAFT_25116 1 9.00E-117 6.00E-118 PGK5 phosphoglycerate kinase (EC:2.7.2.3) -3.710 1.179 9.98E-03 Locus_4927_Transcript_4/10_Confidence_0.308_Length_1236 tps:THAPSDRAFT_25116 1 1.00E-116 7.00E-118 PGK5 phosphoglycerate kinase (EC:2.7.2.3) -4.479 1.305 4.77E-03 Locus_577_Transcript_10/10_Confidence_0.318_Length_1412 tps:THAPSDRAFT_28239 0.942 5.10E-05 3.40E-06 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 2.010 0.503 8.11E-04 Locus_577_Transcript_4/10_Confidence_0.318_Length_1437 tps:THAPSDRAFT_28239 0.936 6.50E-05 4.30E-06 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 2.009 0.478 3.93E-04 Locus_7524_Transcript_1/8_Confidence_0.263_Length_265 tps:THAPSDRAFT_256250 0.995 1.10E-18 7.40E-20 hypothetical protein fructose-1,6-bisphosphatase I (EC:3.1.3.11) 3.332 1.034 8.25E-03 Locus_7524_Transcript_4/8_Confidence_0.316_Length_404 tps:THAPSDRAFT_256250 0.994 1.30E-16 8.50E-18 hypothetical protein fructose-1,6-bisphosphatase I (EC:3.1.3.11) 4.024 0.989 6.34E-04 Locus_7524_Transcript_5/8_Confidence_0.316_Length_251 tps:THAPSDRAFT_256250 0.997 9.00E-21 6.00E-22 hypothetical protein fructose-1,6-bisphosphatase I (EC:3.1.3.11) 3.028 0.837 2.76E-03 Locus_7524_Transcript_6/8_Confidence_0.158_Length_370 tps:THAPSDRAFT_256250 0.979 6.00E-09 4.00E-10 hypothetical protein fructose-1,6-bisphosphatase I (EC:3.1.3.11) 3.540 0.933 1.60E-03 Locus_7524_Transcript_7/8_Confidence_0.316_Length_526 tps:THAPSDRAFT_256250 0.999 2.60E-27 1.70E-28 hypothetical protein fructose-1,6-bisphosphatase I (EC:3.1.3.11) 3.921 1.129 4.26E-03 Locus_8845_Transcript_3/4_Confidence_0.500_Length_1489 tps:THAPSDRAFT_263425 0.999 1.10E-28 7.20E-30 hypothetical protein probable phosphoglycerate mutase (EC:5.4.2.12) -3.711 1.025 2.73E-03

**Fold Change is calculated as an average of the replicates Table S12: Transcipts Mapping to T. pseudonana TCA Homlogs with Gene Expression Directly After UVB Irradiation Probability of Evalue of Matching p-value of Matching Fold Change Compared to Standard Error p-value of Transcript Name T. pseudonana Hit ID Matching Homolog Homolog Homolog Homolog Hit Name Non-irradiated Cells of Fold Change Fold Change Locus_11856_Transcript_1/1_Confidence_1.000_Length_2037 tps:THAPSDRAFT_32945 0.972 1.20E-08 1.10E-09 SDH1 K00235 succinate dehydrogenase (EC:1.3.5.1) -4.051 1.057 1.42E-03 Locus_11892_Transcript_3/3_Confidence_0.700_Length_694 tps:THAPSDRAFT_20726 0.959 2.20E-05 2.00E-06 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) -3.215 0.914 3.73E-03 Locus_12094_Transcript_2/2_Confidence_0.600_Length_1520 tps:THAPSDRAFT_20726 0.918 4.00E-05 3.60E-06 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 2.290 0.714 8.65E-03 Locus_1363_Transcript_9/9_Confidence_0.250_Length_362 tps:THAPSDRAFT_24399 0.989 1.00E-12 9.40E-14 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) -3.053 0.730 4.21E-04 Locus_13689_Transcript_1/2_Confidence_0.167_Length_1092 tps:THAPSDRAFT_11075 0.972 7.40E-06 6.70E-07 K01958 pyruvate carboxylase (EC:6.4.1.1) 2.501 0.682 2.38E-03 Locus_13689_Transcript_2/2_Confidence_0.917_Length_1116 tps:THAPSDRAFT_11075 0.967 3.00E-05 2.70E-06 K01958 pyruvate carboxylase (EC:6.4.1.1) 3.523 0.658 2.26E-06 Locus_14123_Transcript_10/10_Confidence_0.333_Length_646 tps:THAPSDRAFT_31362 0.997 2.40E-20 2.20E-21 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 3.297 0.910 2.72E-03 Locus_14123_Transcript_2/10_Confidence_0.333_Length_675 tps:THAPSDRAFT_11075 0.997 1.30E-20 1.20E-21 K01958 pyruvate carboxylase (EC:6.4.1.1) 3.608 0.855 3.62E-04 Locus_14123_Transcript_9/10_Confidence_0.333_Length_646 tps:THAPSDRAFT_31362 0.997 2.40E-20 2.20E-21 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 3.231 1.011 8.84E-03 Locus_1616_Transcript_1/1_Confidence_1.000_Length_1238 tps:THAPSDRAFT_20726 0.976 6.60E-08 6.00E-09 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) -4.284 1.049 5.98E-04 Locus_168_Transcript_5/9_Confidence_0.400_Length_1635 tps:THAPSDRAFT_16169 0.996 7.30E-19 6.70E-20 K00161 pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1) -3.765 1.063 3.49E-03 Locus_168_Transcript_9/9_Confidence_0.350_Length_2140 tps:THAPSDRAFT_16169 0.995 4.90E-18 4.50E-19 K00161 pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1) -3.627 0.921 1.00E-03 Locus_1807_Transcript_4/9_Confidence_0.250_Length_927 tps:THAPSDRAFT_20726 0.98 2.00E-08 1.90E-09 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) -2.751 0.841 7.33E-03 Locus_19510_Transcript_1/1_Confidence_1.000_Length_1081 tps:THAPSDRAFT_20726 0.986 2.40E-10 2.20E-11 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 5.142 0.845 4.16E-08 Locus_20079_Transcript_3/3_Confidence_0.571_Length_180 tps:THAPSDRAFT_31362 0.988 3.00E-12 2.70E-13 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 4.205 1.050 7.99E-04 Locus_20384_Transcript_2/2_Confidence_0.667_Length_644 tps:THAPSDRAFT_20726 0.969 4.20E-07 3.80E-08 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 3.103 0.928 6.03E-03 Locus_2386_Transcript_6/7_Confidence_0.429_Length_877 tps:THAPSDRAFT_31362 0.905 2.60E-04 2.30E-05 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) -3.761 0.760 1.65E-05 Locus_2422_Transcript_3/3_Confidence_0.600_Length_208 tps:THAPSDRAFT_11411 0.999 9.80E-26 8.90E-27 CSN1 K01647 citrate synthase (EC:2.3.3.1) -3.805 1.023 2.03E-03 Locus_2564_Transcript_3/10_Confidence_0.367_Length_1755 tps:THAPSDRAFT_20726 0.987 3.90E-11 3.50E-12 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) -3.200 0.931 4.73E-03 Locus_26628_Transcript_1/1_Confidence_1.000_Length_402 tps:THAPSDRAFT_24399 0.995 1.00E-16 9.50E-18 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) 5.988 1.879 9.06E-03 Locus_30112_Transcript_1/1_Confidence_1.000_Length_231 tps:THAPSDRAFT_22464 0.991 1.40E-14 1.30E-15 FUM1 K01676 fumarate hydratase (EC:4.2.1.2) 4.899 1.094 1.32E-04 Locus_30184_Transcript_1/1_Confidence_1.000_Length_1031 tps:THAPSDRAFT_20726 0.972 6.30E-07 5.70E-08 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 6.010 0.968 1.98E-08 Locus_31951_Transcript_1/1_Confidence_1.000_Length_217 tps:THAPSDRAFT_36971 0.988 3.40E-12 3.10E-13 K00658 2-oxoglutarate dehydrogenase E2 component (EC:2.3.1.61) 6.368 1.736 2.38E-03 Locus_32639_Transcript_1/1_Confidence_1.000_Length_484 tps:THAPSDRAFT_32945 0.981 2.10E-10 1.90E-11 SDH1 K00235 succinate dehydrogenase (EC:1.3.5.1) 5.433 1.545 3.76E-03 Locus_34122_Transcript_1/1_Confidence_1.000_Length_212 tps:THAPSDRAFT_31362 0.978 6.70E-09 6.10E-10 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 7.072 1.181 7.22E-08 Locus_3612_Transcript_1/2_Confidence_0.750_Length_1207 tps:THAPSDRAFT_20726 0.996 3.80E-17 3.50E-18 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) -4.674 1.087 2.65E-04 Locus_4005_Transcript_1/2_Confidence_0.750_Length_1946 tps:THAPSDRAFT_11075 0.93 1.20E-03 1.10E-04 K01958 pyruvate carboxylase (EC:6.4.1.1) -3.245 0.865 1.84E-03 Locus_5607_Transcript_1/7_Confidence_0.444_Length_664 tps:THAPSDRAFT_32945 0.916 5.60E-05 5.10E-06 SDH1 K00235 succinate dehydrogenase (EC:1.3.5.1) -2.282 0.687 6.42E-03 Locus_5607_Transcript_5/7_Confidence_0.444_Length_602 tps:THAPSDRAFT_32945 0.957 2.30E-06 2.10E-07 SDH1 K00235 succinate dehydrogenase (EC:1.3.5.1) -2.600 0.781 6.27E-03 Locus_577_Transcript_10/10_Confidence_0.318_Length_1412 tps:THAPSDRAFT_20726 0.975 7.90E-08 7.10E-09 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 2.010 0.503 8.11E-04 Locus_577_Transcript_4/10_Confidence_0.318_Length_1437 tps:THAPSDRAFT_20726 0.979 1.10E-08 1.00E-09 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 2.009 0.478 3.93E-04 Locus_5846_Transcript_1/6_Confidence_0.357_Length_625 tps:THAPSDRAFT_20726 0.991 2.20E-13 2.00E-14 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 4.805 0.971 1.67E-05 Locus_5846_Transcript_3/6_Confidence_0.143_Length_426 tps:THAPSDRAFT_20726 0.953 1.40E-05 1.30E-06 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 3.934 1.028 1.45E-03 Locus_5846_Transcript_6/6_Confidence_0.429_Length_660 tps:THAPSDRAFT_20726 0.992 7.00E-14 6.30E-15 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 4.464 1.269 3.73E-03 Locus_677_Transcript_1/9_Confidence_0.250_Length_2257 tps:THAPSDRAFT_11075 1 7.80E-42 7.10E-43 K01958 pyruvate carboxylase (EC:6.4.1.1) -3.349 0.996 5.76E-03 Locus_697_Transcript_1/10_Confidence_0.308_Length_605 tps:THAPSDRAFT_24399 1 1.00E-30 9.30E-32 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) -3.446 0.654 3.55E-06 Locus_697_Transcript_10/10_Confidence_0.327_Length_605 tps:THAPSDRAFT_24399 1 2.40E-33 2.20E-34 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) -2.730 0.647 3.66E-04 Locus_697_Transcript_2/10_Confidence_0.308_Length_605 tps:THAPSDRAFT_24399 0.997 1.60E-21 1.50E-22 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) -3.978 0.815 2.28E-05 Locus_697_Transcript_4/10_Confidence_0.154_Length_447 tps:THAPSDRAFT_24399 0.997 7.10E-21 6.40E-22 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) -4.985 1.279 1.14E-03 Locus_697_Transcript_5/10_Confidence_0.308_Length_1411 tps:THAPSDRAFT_24399 1 7.70E-60 7.00E-61 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) -3.309 0.664 1.40E-05 Locus_697_Transcript_6/10_Confidence_0.308_Length_1411 tps:THAPSDRAFT_24399 1 7.70E-60 7.00E-61 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) -2.580 0.498 5.33E-06 Locus_697_Transcript_8/10_Confidence_0.385_Length_674 tps:THAPSDRAFT_24399 1 1.10E-35 9.60E-37 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) -1.953 0.446 1.98E-04 Locus_7417_Transcript_1/1_Confidence_1.000_Length_2006 tps:THAPSDRAFT_20726 0.98 7.60E-09 6.90E-10 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) -3.562 0.552 4.39E-09 Locus_7499_Transcript_6/7_Confidence_0.375_Length_618 tps:THAPSDRAFT_31362 0.997 3.40E-21 3.10E-22 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 3.869 1.005 1.34E-03 Locus_9347_Transcript_1/1_Confidence_1.000_Length_1773 tps:THAPSDRAFT_24399 0.981 1.30E-08 1.20E-09 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) -3.397 0.797 3.09E-04 Locus_9440_Transcript_2/2_Confidence_0.800_Length_2127 tps:THAPSDRAFT_24399 0.999 1.50E-28 1.40E-29 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) -4.319 1.265 5.02E-03 Locus_9690_Transcript_1/2_Confidence_0.750_Length_1749 tps:THAPSDRAFT_21177 0.955 6.40E-05 5.80E-06 LAT1_2 dihydrolipoamide s-acetyltransferase (EC:2.3.1.12) 3.205 0.637 1.13E-05

**Fold Change is calculated as an average of the replicates Table S13: Transcipts Mapping to T. pseudonana Calvin Cycle Homlogs with Gene Expression Directly After UVB Irradiation

Probability of Evalue of Matching p-value of Matching Fold Change Compared Standard Error p-value of Transcript Name T. pseudonana Hit ID Matching Homolog Homolog Homolog Homolog Hit Name to Non-irradiated Cells of Fold Change Fold Change Locus_10366_Transcript_5/8_Confidence_0.385_Length_1427 tps:THAPSDRAFT_5500 0.991 4.70E-13 2.90E-14 PDK1_2, pyruvate, orthophosphate dikinase 3.461 0.810 2.93E-04 Locus_10442_Transcript_4/4_Confidence_0.375_Length_712 tps:THAPSDRAFT_412 0.996 3.60E-18 2.30E-19 ALAT_1, alanine transaminase 1.640 0.480 4.99E-03 Locus_1065_Transcript_3/4_Confidence_0.375_Length_941 tps:THAPSDRAFT_4376 0.993 2.30E-15 1.40E-16 PRK1 ,phosphoribulokinase -3.034 0.863 3.74E-03 Locus_1065_Transcript_4/4_Confidence_0.375_Length_941 tps:THAPSDRAFT_4376 0.993 2.30E-15 1.40E-16 PRK1 ,phosphoribulokinase -2.629 0.674 1.13E-03 Locus_11497_Transcript_2/2_Confidence_0.500_Length_1049 tps:THAPSDRAFT_412 0.979 1.70E-08 1.10E-09 ALAT_1, alanine transaminase -3.140 0.970 7.96E-03 Locus_11866_Transcript_1/2_Confidence_0.800_Length_246 tps:THAPSDRAFT_4376 0.977 1.30E-08 7.90E-10 PRK1 ,phosphoribulokinase 4.521 0.939 3.10E-05 Locus_11892_Transcript_3/3_Confidence_0.700_Length_694 tps:THAPSDRAFT_28239 0.973 2.20E-07 1.40E-08 glyceraldehyde 3-phosphate dehydrogenase -3.215 0.914 3.73E-03 Locus_12094_Transcript_2/2_Confidence_0.600_Length_1520 tps:THAPSDRAFT_20726 0.918 5.80E-05 3.60E-06 MDH1, malate dehydrogenase 2.290 0.714 8.65E-03 Locus_12872_Transcript_1/2_Confidence_0.750_Length_4571 tps:THAPSDRAFT_4376 0.973 9.20E-08 5.70E-09 PRK1 ,phosphoribulokinase 3.009 0.833 2.81E-03 Locus_12872_Transcript_2/2_Confidence_0.750_Length_4571 tps:THAPSDRAFT_4376 0.973 9.20E-08 5.70E-09 PRK1 ,phosphoribulokinase 3.003 0.819 2.39E-03 Locus_13689_Transcript_1/2_Confidence_0.167_Length_1092 tps:THAPSDRAFT_bd2088 0.974 3.30E-06 2.10E-07 RBL, ribulose-bisphosphate carboxylase large chain 2.501 0.682 2.38E-03 Locus_13689_Transcript_2/2_Confidence_0.917_Length_1116 tps:THAPSDRAFT_bd2088 0.968 2.20E-05 1.40E-06 RBL, ribulose-bisphosphate carboxylase large chain 3.523 0.658 2.26E-06 Locus_14395_Transcript_1/4_Confidence_0.375_Length_964 tps:THAPSDRAFT_bd2088 0.973 2.70E-05 1.70E-06 RBL, ribulose-bisphosphate carboxylase large chain 3.805 0.843 1.15E-04 Locus_14395_Transcript_3/4_Confidence_0.375_Length_1411 tps:THAPSDRAFT_bd2088 0.973 1.80E-05 1.10E-06 RBL, ribulose-bisphosphate carboxylase large chain 1.986 0.550 2.83E-03 Locus_14395_Transcript_4/4_Confidence_0.375_Length_1411 tps:THAPSDRAFT_bd2088 0.973 1.80E-05 1.10E-06 RBL, ribulose-bisphosphate carboxylase large chain 2.145 0.552 1.19E-03 Locus_14837_Transcript_1/1_Confidence_1.000_Length_1376 tps:THAPSDRAFT_4376 0.98 4.50E-09 2.80E-10 PRK1 ,phosphoribulokinase 1.687 0.481 3.88E-03 Locus_1490_Transcript_3/7_Confidence_0.571_Length_2748 tps:THAPSDRAFT_4376 0.985 2.10E-10 1.30E-11 PRK1 ,phosphoribulokinase -1.846 0.530 4.13E-03 Locus_15459_Transcript_1/1_Confidence_1.000_Length_316 tps:THAPSDRAFT_31424 0.954 6.70E-06 4.20E-07 AAT2, aspartate aminotransferase, mitochondrial -3.981 1.019 1.11E-03 Locus_15899_Transcript_1/2_Confidence_0.750_Length_2463 tps:THAPSDRAFT_4376 0.949 1.20E-05 7.40E-07 PRK1 ,phosphoribulokinase -4.786 1.423 5.73E-03 Locus_1616_Transcript_1/1_Confidence_1.000_Length_1238 tps:THAPSDRAFT_20726 0.976 9.60E-08 6.00E-09 MDH1, malate dehydrogenase -4.284 1.049 5.98E-04 Locus_16717_Transcript_2/3_Confidence_0.545_Length_1259 tps:THAPSDRAFT_412 0.998 2.50E-22 1.60E-23 ALAT_1, alanine transaminase -3.689 1.041 3.45E-03 Locus_168_Transcript_5/9_Confidence_0.400_Length_1635 tps:THAPSDRAFT_21175 0.995 4.80E-17 3.00E-18 TKT2, transketolase -3.765 1.063 3.49E-03 Locus_168_Transcript_9/9_Confidence_0.350_Length_2140 tps:THAPSDRAFT_21175 0.994 2.20E-16 1.40E-17 TKT2, transketolase -3.627 0.921 1.00E-03 Locus_17185_Transcript_3/5_Confidence_0.375_Length_615 tps:THAPS_30380 0.938 1.50E-04 9.40E-06 TPI2, triosephosphate isomerase (TIM) 5.599 1.690 6.56E-03 Locus_1807_Transcript_4/9_Confidence_0.250_Length_927 tps:THAPSDRAFT_20726 0.98 3.00E-08 1.90E-09 MDH1, malate dehydrogenase -2.751 0.841 7.33E-03 Locus_18086_Transcript_1/1_Confidence_1.000_Length_207 tps:THAPSDRAFT_4376 0.979 1.00E-08 6.60E-10 PRK1 ,phosphoribulokinase 2.999 0.687 2.09E-04 Locus_1869_Transcript_1/1_Confidence_1.000_Length_1614 tps:THAPSDRAFT_4376 0.988 6.60E-13 4.10E-14 PRK1 ,phosphoribulokinase -3.161 0.809 1.11E-03 Locus_19510_Transcript_1/1_Confidence_1.000_Length_1081 tps:THAPSDRAFT_20726 0.986 3.50E-10 2.20E-11 MDH1, malate dehydrogenase 5.142 0.845 4.16E-08 Locus_1993_Transcript_1/5_Confidence_0.538_Length_783 tps:THAPSDRAFT_4376 0.944 1.10E-05 7.10E-07 PRK1 ,phosphoribulokinase -4.415 1.107 8.47E-04 Locus_20384_Transcript_2/2_Confidence_0.667_Length_644 tps:THAPSDRAFT_20726 0.969 6.10E-07 3.80E-08 MDH1, malate dehydrogenase 3.103 0.928 6.03E-03 Locus_213_Transcript_10/10_Confidence_0.367_Length_559 tps:THAPSDRAFT_bd2088 0.996 1.00E-18 6.30E-20 RBL, ribulose-bisphosphate carboxylase large chain -2.519 0.393 5.62E-09 Locus_213_Transcript_2/10_Confidence_0.200_Length_454 tps:THAPSDRAFT_bd2088 0.999 7.50E-26 4.70E-27 RBL, ribulose-bisphosphate carboxylase large chain -2.244 0.639 3.79E-03 Locus_213_Transcript_3/10_Confidence_0.200_Length_454 tps:THAPSDRAFT_bd2088 0.997 1.20E-21 7.30E-23 RBL, ribulose-bisphosphate carboxylase large chain -2.231 0.424 3.74E-06 Locus_213_Transcript_4/10_Confidence_0.133_Length_415 tps:THAPSDRAFT_bd2088 0.984 6.90E-11 4.30E-12 RBL, ribulose-bisphosphate carboxylase large chain -2.650 0.589 1.22E-04 Locus_213_Transcript_5/10_Confidence_0.133_Length_415 tps:THAPSDRAFT_bd2088 0.959 1.30E-06 7.90E-08 RBL, ribulose-bisphosphate carboxylase large chain -1.797 0.451 8.53E-04 Locus_213_Transcript_8/10_Confidence_0.400_Length_637 tps:THAPSDRAFT_bd2088 1 1.90E-33 1.20E-34 RBL, ribulose-bisphosphate carboxylase large chain -1.901 0.347 1.14E-06 Locus_213_Transcript_9/10_Confidence_0.400_Length_773 tps:THAPSDRAFT_bd2088 1 1.20E-33 7.60E-35 RBL, ribulose-bisphosphate carboxylase large chain -2.146 0.420 7.96E-06 Locus_2290_Transcript_10/12_Confidence_0.237_Length_1021 tps:THAPSDRAFT_412 0.995 1.30E-15 8.20E-17 ALAT_1, alanine transaminase -5.029 1.154 2.14E-04 Locus_2290_Transcript_8/12_Confidence_0.237_Length_1021 tps:THAPSDRAFT_412 0.995 6.40E-16 4.00E-17 ALAT_1, alanine transaminase -2.460 0.741 6.42E-03 Locus_2404_Transcript_5/6_Confidence_0.357_Length_3987 tps:THAPSDRAFT_4376 0.929 3.10E-04 1.90E-05 PRK1 ,phosphoribulokinase -2.789 0.849 7.09E-03 Locus_2404_Transcript_6/6_Confidence_0.357_Length_3987 tps:THAPSDRAFT_4376 0.93 2.90E-04 1.80E-05 PRK1 ,phosphoribulokinase -3.353 0.894 1.83E-03 Locus_241_Transcript_3/4_Confidence_0.154_Length_179 tps:THAPSDRAFT_4376 0.976 3.00E-08 1.90E-09 PRK1 ,phosphoribulokinase -5.010 1.320 1.59E-03 Locus_2564_Transcript_3/10_Confidence_0.367_Length_1755 tps:THAPSDRAFT_20726 0.987 5.60E-11 3.50E-12 MDH1, malate dehydrogenase -3.200 0.931 4.73E-03 Locus_26246_Transcript_1/1_Confidence_0.556_Length_186 tps:THAPS_30380 0.961 3.50E-06 2.20E-07 TPI2, triosephosphate isomerase (TIM) 3.934 1.219 8.15E-03 Locus_27646_Transcript_1/1_Confidence_1.000_Length_189 tps:THAPSDRAFT_28239 0.993 2.40E-16 1.50E-17 glyceraldehyde 3-phosphate dehydrogenase 2.799 0.864 7.93E-03 Locus_2811_Transcript_1/1_Confidence_1.000_Length_1169 tps:THAPSDRAFT_4376 0.933 2.50E-05 1.50E-06 PRK1 ,phosphoribulokinase -3.805 0.859 1.61E-04 Locus_2845_Transcript_1/2_Confidence_0.875_Length_1561 tps:THAPSDRAFT_4376 0.904 1.40E-04 9.00E-06 PRK1 ,phosphoribulokinase 3.889 0.756 6.58E-06 Locus_2845_Transcript_2/2_Confidence_0.875_Length_1561 tps:THAPSDRAFT_4376 0.904 1.40E-04 9.00E-06 PRK1 ,phosphoribulokinase 3.982 0.692 2.64E-07 Locus_28865_Transcript_1/1_Confidence_1.000_Length_1124 tps:THAPSDRAFT_412 0.987 1.30E-10 7.90E-12 ALAT_1, alanine transaminase 7.797 1.515 6.47E-06 Locus_29494_Transcript_1/1_Confidence_1.000_Length_575 tps:THAPSDRAFT_412 0.985 1.80E-10 1.10E-11 ALAT_1, alanine transaminase 5.209 1.287 6.84E-04 Locus_30184_Transcript_1/1_Confidence_1.000_Length_1031 tps:THAPSDRAFT_20726 0.972 9.20E-07 5.70E-08 MDH1, malate dehydrogenase 6.010 0.968 1.98E-08 Locus_30362_Transcript_1/2_Confidence_0.750_Length_1025 tps:THAPSDRAFT_4376 0.963 7.50E-06 4.70E-07 PRK1 ,phosphoribulokinase 5.034 1.444 4.09E-03 Locus_30362_Transcript_2/2_Confidence_0.750_Length_1025 tps:THAPSDRAFT_4376 0.963 7.50E-06 4.70E-07 PRK1 ,phosphoribulokinase 5.081 1.398 2.64E-03 Locus_30794_Transcript_1/1_Confidence_1.000_Length_201 tps:THAPSDRAFT_28239 0.991 1.50E-14 9.20E-16 glyceraldehyde 3-phosphate dehydrogenase 2.985 0.536 7.42E-07 Locus_3262_Transcript_4/4_Confidence_0.417_Length_1417 tps:THAPSDRAFT_4376 0.914 5.40E-05 3.40E-06 PRK1 ,phosphoribulokinase -2.133 0.569 1.87E-03 Locus_34083_Transcript_2/4_Confidence_0.400_Length_351 tps:THAPSDRAFT_4376 0.982 2.90E-09 1.80E-10 PRK1 ,phosphoribulokinase 7.779 1.316 1.10E-07 Locus_34083_Transcript_3/4_Confidence_0.400_Length_670 tps:THAPSDRAFT_4376 0.968 3.30E-06 2.00E-07 PRK1 ,phosphoribulokinase 5.889 1.370 2.70E-04 Locus_34083_Transcript_4/4_Confidence_0.400_Length_670 tps:THAPSDRAFT_4376 0.968 3.30E-06 2.00E-07 PRK1 ,phosphoribulokinase 6.075 1.272 3.73E-05 Locus_3437_Transcript_1/10_Confidence_0.053_Length_165 tps:THAPSDRAFT_4376 0.969 3.00E-07 1.80E-08 PRK1 ,phosphoribulokinase 5.081 1.539 6.74E-03 Locus_3437_Transcript_2/10_Confidence_0.053_Length_165 tps:THAPSDRAFT_4376 0.969 3.00E-07 1.80E-08 PRK1 ,phosphoribulokinase 4.863 1.461 6.28E-03 Locus_3612_Transcript_1/2_Confidence_0.750_Length_1207 tps:THAPSDRAFT_20726 0.996 5.50E-17 3.50E-18 MDH1, malate dehydrogenase -4.674 1.087 2.65E-04 Locus_3691_Transcript_3/8_Confidence_0.267_Length_512 tps:THAPSDRAFT_4376 0.981 6.70E-10 4.20E-11 PRK1 ,phosphoribulokinase -4.375 1.263 4.35E-03 Locus_3691_Transcript_6/8_Confidence_0.300_Length_539 tps:THAPSDRAFT_4376 0.981 7.40E-10 4.60E-11 PRK1 ,phosphoribulokinase -3.966 1.123 3.57E-03 Locus_4_Transcript_10/12_Confidence_0.292_Length_1334 tps:THAPSDRAFT_bd2088 1 1.00E-37 6.50E-39 RBL, ribulose-bisphosphate carboxylase large chain -2.634 0.491 2.17E-06 Locus_4_Transcript_11/12_Confidence_0.292_Length_1338 tps:THAPSDRAFT_bd2088 0.996 2.70E-19 1.70E-20 RBL, ribulose-bisphosphate carboxylase large chain -2.318 0.537 2.50E-04 Locus_4_Transcript_12/12_Confidence_0.331_Length_1201 tps:THAPSDRAFT_bd2088 1 1.50E-62 9.40E-64 RBL, ribulose-bisphosphate carboxylase large chain -2.482 0.501 1.61E-05 Locus_4_Transcript_7/12_Confidence_0.292_Length_1236 tps:THAPSDRAFT_bd2088 0.997 3.40E-20 2.20E-21 RBL, ribulose-bisphosphate carboxylase large chain -2.529 0.482 3.88E-06 Locus_4_Transcript_9/12_Confidence_0.185_Length_1314 tps:THAPSDRAFT_bd2088 1 1.30E-63 8.40E-65 RBL, ribulose-bisphosphate carboxylase large chain -2.713 0.560 2.71E-05 Locus_4005_Transcript_1/2_Confidence_0.750_Length_1946 tps:THAPS_30380 0.956 8.20E-05 5.10E-06 TPI2, triosephosphate isomerase (TIM) -3.245 0.865 1.84E-03 Locus_4026_Transcript_1/1_Confidence_1.000_Length_1112 tps:THAPSDRAFT_4376 0.979 6.30E-09 3.90E-10 PRK1 ,phosphoribulokinase -4.125 1.036 8.61E-04 Locus_417_Transcript_1/2_Confidence_0.750_Length_885 tps:THAPS_30380 1 1.70E-46 1.10E-47 TPI2, triosephosphate isomerase (TIM) 5.615 1.278 1.85E-04 Locus_417_Transcript_2/2_Confidence_0.500_Length_822 tps:THAPS_30380 1 2.50E-47 1.60E-48 TPI2, triosephosphate isomerase (TIM) 4.743 1.181 7.66E-04 Locus_4686_Transcript_1/1_Confidence_1.000_Length_959 tps:THAPSDRAFT_4376 0.928 3.30E-05 2.10E-06 PRK1 ,phosphoribulokinase 1.503 0.401 1.86E-03 Locus_4833_Transcript_1/2_Confidence_0.667_Length_1566 tps:THAPSDRAFT_412 0.999 1.60E-23 1.00E-24 ALAT_1, alanine transaminase -3.188 0.888 3.01E-03 Locus_4833_Transcript_2/2_Confidence_0.667_Length_1433 tps:THAPSDRAFT_412 0.999 9.90E-25 6.20E-26 ALAT_1, alanine transaminase -3.794 1.085 3.99E-03 Locus_4852_Transcript_8/8_Confidence_0.417_Length_664 tps:THAPS_30380 0.916 1.00E-04 6.50E-06 TPI2, triosephosphate isomerase (TIM) 3.379 0.874 1.26E-03 Locus_4927_Transcript_10/10_Confidence_0.346_Length_1172 tps:THAPSDRAFT_25116 1 9.00E-117 6.00E-118 PGK5, phosphoglycerate kinase -3.710 1.179 9.98E-03 Locus_4927_Transcript_4/10_Confidence_0.308_Length_1236 tps:THAPSDRAFT_25116 1 1.00E-116 7.00E-118 PGK5, phosphoglycerate kinase -4.479 1.305 4.77E-03 Locus_550_Transcript_1/10_Confidence_0.325_Length_966 tps:THAPSDRAFT_4376 0.97 2.70E-07 1.70E-08 PRK1 ,phosphoribulokinase -3.542 0.983 2.87E-03 Locus_5744_Transcript_1/1_Confidence_1.000_Length_3608 tps:THAPSDRAFT_4376 0.974 7.20E-08 4.50E-09 PRK1 ,phosphoribulokinase -3.389 1.058 8.72E-03 Locus_577_Transcript_10/10_Confidence_0.318_Length_1412 tps:THAPSDRAFT_20726 0.975 1.10E-07 7.10E-09 MDH1, malate dehydrogenase 2.010 0.503 8.11E-04 Locus_577_Transcript_4/10_Confidence_0.318_Length_1437 tps:THAPSDRAFT_20726 0.979 1.60E-08 1.00E-09 MDH1, malate dehydrogenase 2.009 0.478 3.93E-04 Locus_5846_Transcript_1/6_Confidence_0.357_Length_625 tps:THAPSDRAFT_20726 0.991 3.30E-13 2.00E-14 MDH1, malate dehydrogenase 4.805 0.971 1.67E-05 Locus_5846_Transcript_3/6_Confidence_0.143_Length_426 tps:THAPSDRAFT_20726 0.953 2.10E-05 1.30E-06 MDH1, malate dehydrogenase 3.934 1.028 1.45E-03 Locus_5846_Transcript_6/6_Confidence_0.429_Length_660 tps:THAPSDRAFT_20726 0.992 1.00E-13 6.30E-15 MDH1, malate dehydrogenase 4.464 1.269 3.73E-03 Locus_7417_Transcript_1/1_Confidence_1.000_Length_2006 tps:THAPSDRAFT_20726 0.98 1.10E-08 6.90E-10 MDH1, malate dehydrogenase -3.562 0.552 4.39E-09 Locus_7524_Transcript_1/8_Confidence_0.263_Length_265 tps:THAPSDRAFT_270391 0.996 5.40E-20 3.40E-21 sedoheptulose-bisphosphatase 3.332 1.034 8.25E-03 Locus_7524_Transcript_4/8_Confidence_0.316_Length_404 tps:THAPSDRAFT_270391 0.996 9.30E-20 5.80E-21 sedoheptulose-bisphosphatase 4.024 0.989 6.34E-04 Locus_7524_Transcript_5/8_Confidence_0.316_Length_251 tps:THAPSDRAFT_270391 0.998 3.00E-23 1.90E-24 sedoheptulose-bisphosphatase 3.028 0.837 2.76E-03 Locus_7524_Transcript_6/8_Confidence_0.158_Length_370 tps:THAPSDRAFT_256250 0.979 6.40E-09 4.00E-10 fructose-1,6-bisphosphatase I 3.540 0.933 1.60E-03 Locus_7524_Transcript_7/8_Confidence_0.316_Length_526 tps:THAPSDRAFT_256250 0.999 2.80E-27 1.70E-28 fructose-1,6-bisphosphatase I 3.921 1.129 4.26E-03 Locus_8541_Transcript_1/2_Confidence_0.667_Length_2256 tps:THAPSDRAFT_4376 0.982 1.70E-09 1.10E-10 PRK1 ,phosphoribulokinase -3.275 0.745 1.85E-04 Locus_8541_Transcript_2/2_Confidence_0.667_Length_2256 tps:THAPSDRAFT_4376 0.981 5.50E-09 3.40E-10 PRK1 ,phosphoribulokinase -2.868 0.685 4.11E-04 Locus_875_Transcript_6/6_Confidence_0.357_Length_1408 tps:THAPSDRAFT_412 0.999 9.30E-28 5.80E-29 ALAT_1, alanine transaminase -2.204 0.670 6.92E-03 Locus_8846_Transcript_3/3_Confidence_0.588_Length_415 tps:THAPSDRAFT_4376 0.956 6.00E-06 3.70E-07 PRK1 ,phosphoribulokinase 4.215 0.858 1.99E-05

**Fold Change is calculated as an average of the replicates Table S14: Transcipts Mapping to T. pseudonana Photosynthetic Homlogs with Gene Expression of Dark Recovered Cells After UVB Irradiation

Probability of Evalue of Matching p-value of Matching Fold Change Compared Standard Error of p-value of Transcript Name T. pseudonana Hit ID Matching Homolog Homolog Homolog Homolog Hit Name to Non-irradiated Cells Fold Change Fold Change Locus_11238_Transcript_1/3_Confidence_0.500_Length_333 tps:THAPSDRAFT_bd573 0.935 2.60E-04 9.20E-06 apocytochrome f 4.988 0.756 6.91E-10 Locus_11238_Transcript_2/3_Confidence_0.750_Length_414 tps:THAPSDRAFT_bd573 0.933 2.70E-04 9.70E-06 apocytochrome f 5.124 0.798 2.07E-09 Locus_11238_Transcript_3/3_Confidence_0.625_Length_306 tps:THAPSDRAFT_bd573 0.95 9.20E-05 3.30E-06 apocytochrome f 4.915 0.707 6.77E-11 Locus_11587_Transcript_1/1_Confidence_1.000_Length_497 tps:THAPSDRAFT_bd1039 0.995 1.80E-16 6.60E-18 PsbV, photosystem II cytochrome c550 8.752 1.313 4.50E-10 Locus_154_Transcript_1/1_Confidence_1.000_Length_2943 tps:THAPSDRAFT_bd467 1 2.50E-66 9.10E-68 petB, cytochrome b6 -3.907 1.158 3.57E-03 Locus_18349_Transcript_1/1_Confidence_1.000_Length_688 tps:THAPSDRAFT_2848 0.957 1.50E-05 5.30E-07 photosystem II PsbU protein 8.067 1.192 2.31E-10 Locus_21003_Transcript_1/6_Confidence_0.357_Length_865 tps:THAPSDRAFT_bd1048 0.987 1.70E-12 6.20E-14 photosystem I subunit VII 8.202 0.822 1.35E-21 Locus_21003_Transcript_2/6_Confidence_0.357_Length_835 tps:THAPSDRAFT_bd1048 0.987 1.20E-12 4.30E-14 photosystem I subunit VII 7.374 1.267 7.61E-08 Locus_21003_Transcript_4/6_Confidence_0.429_Length_1037 tps:THAPSDRAFT_bd1048 0.986 4.00E-12 1.40E-13 photosystem I subunit VII 8.505 0.649 1.16E-36 Locus_21003_Transcript_6/6_Confidence_0.357_Length_835 tps:THAPSDRAFT_bd1048 0.987 1.20E-12 4.30E-14 photosystem I subunit VII 7.119 0.860 3.93E-15 Locus_23689_Transcript_2/3_Confidence_0.500_Length_368 tps:THAPSDRAFT_2848 0.934 7.90E-05 2.80E-06 photosystem II PsbU protein 9.524 0.974 8.57E-21 Locus_24_Transcript_10/10_Confidence_0.386_Length_1974 tps:THAPSDRAFT_bd1736 1 8.20E-64 2.90E-65 photosystem II P680 reaction center D1 protein -4.420 0.977 5.21E-05 Locus_24_Transcript_2/10_Confidence_0.341_Length_1926 tps:THAPSDRAFT_bd1736 1 2.80E-63 9.90E-65 photosystem II P680 reaction center D1 protein -4.058 0.967 2.08E-04 Locus_24_Transcript_3/10_Confidence_0.341_Length_1926 tps:THAPSDRAFT_bd1545 1 2.00E-157 6.00E-159 PSBC, photosystem II CP43 chlorophyll apoprotein -3.618 0.939 7.82E-04 Locus_24_Transcript_4/10_Confidence_0.386_Length_1974 tps:THAPSDRAFT_bd1545 1 3.00E-157 1.00E-158 PSBC, photosystem II CP43 chlorophyll apoprotein -3.248 1.060 8.48E-03 Locus_24_Transcript_6/10_Confidence_0.250_Length_1724 tps:THAPSDRAFT_bd1545 1 3.00E-158 1.00E-159 PSBC, photosystem II CP43 chlorophyll apoprotein -4.221 1.210 2.56E-03 Locus_24_Transcript_7/10_Confidence_0.386_Length_2030 tps:THAPSDRAFT_bd1545 1 4.00E-157 1.00E-158 PSBC, photosystem II CP43 chlorophyll apoprotein -3.851 0.908 1.74E-04 Locus_24_Transcript_9/10_Confidence_0.295_Length_2820 tps:THAPSDRAFT_bd1545 1 9.00E-110 3.00E-111 PSBC, photosystem II CP43 chlorophyll apoprotein -3.058 1.007 9.12E-03 Locus_24373_Transcript_1/1_Confidence_1.000_Length_255 tps:THAPSDRAFT_270229 0.977 2.60E-08 9.10E-10 cytochrome b6-f complex iron-sulfur subunit 7.739 1.781 1.14E-04 Locus_25755_Transcript_1/1_Confidence_1.000_Length_379 tps:THAPSDRAFT_bd573 0.953 5.20E-05 1.90E-06 apocytochrome f 11.589 1.687 1.16E-10 Locus_28196_Transcript_1/2_Confidence_0.750_Length_1403 tps:THAPSDRAFT_bd1039 0.934 1.30E-04 4.80E-06 PsbV, photosystem II cytochrome c550 8.547 1.541 3.46E-07 Locus_28196_Transcript_2/2_Confidence_0.750_Length_1403 tps:THAPSDRAFT_bd1039 0.934 1.30E-04 4.80E-06 PsbV, photosystem II cytochrome c550 9.579 1.612 3.80E-08 Locus_288_Transcript_1/6_Confidence_0.278_Length_719 tps:THAPSDRAFT_bd573 1 6.00E-124 2.00E-125 apocytochrome f -5.017 1.382 1.69E-03 Locus_288_Transcript_2/6_Confidence_0.389_Length_948 tps:THAPSDRAFT_bd573 1 3.00E-121 1.00E-122 apocytochrome f -5.148 1.442 2.05E-03 Locus_288_Transcript_3/6_Confidence_0.389_Length_1033 tps:THAPSDRAFT_bd573 1 2.00E-118 8.00E-120 apocytochrome f -5.320 1.058 5.07E-06 Locus_288_Transcript_4/6_Confidence_0.444_Length_1114 tps:THAPSDRAFT_bd573 1 8.00E-120 3.00E-121 apocytochrome f -4.257 1.094 6.78E-04 Locus_288_Transcript_5/6_Confidence_0.278_Length_719 tps:THAPSDRAFT_bd573 1 5.70E-38 2.00E-39 apocytochrome f -4.080 1.241 4.59E-03 Locus_288_Transcript_6/6_Confidence_0.389_Length_1033 tps:THAPSDRAFT_bd573 1 3.00E-118 1.00E-119 apocytochrome f -4.805 1.055 4.53E-05 Locus_30011_Transcript_1/1_Confidence_1.000_Length_315 tps:THAPSDRAFT_270229 0.969 3.40E-07 1.20E-08 cytochrome b6-f complex iron-sulfur subunit 6.700 2.159 7.64E-03 Locus_31735_Transcript_1/1_Confidence_1.000_Length_230 tps:THAPSDRAFT_bd1039 0.979 8.20E-09 2.90E-10 PsbV, photosystem II cytochrome c550 7.263 1.383 1.62E-06 Locus_32203_Transcript_1/1_Confidence_1.000_Length_230 tps:THAPSDRAFT_2848 0.948 5.80E-05 2.10E-06 photosystem II PsbU protein 9.432 1.758 9.14E-07 Locus_32413_Transcript_1/1_Confidence_1.000_Length_450 tps:THAPSDRAFT_2848 0.992 9.00E-15 3.20E-16 photosystem II PsbU protein 8.064 1.088 2.71E-12 Locus_32737_Transcript_1/2_Confidence_0.750_Length_401 tps:THAPSDRAFT_bd1258 0.994 5.40E-16 1.90E-17 petF_1, ferredoxin 9.079 0.742 4.40E-32 Locus_32918_Transcript_1/1_Confidence_1.000_Length_210 tps:THAPSDRAFT_270229 0.995 5.80E-18 2.10E-19 cytochrome b6-f complex iron-sulfur subunit 7.172 1.672 1.43E-04 Locus_33002_Transcript_1/1_Confidence_1.000_Length_388 tps:THAPSDRAFT_35934 0.978 5.50E-08 2.00E-09 cytochrome c6 7.322 1.397 1.74E-06 Locus_35300_Transcript_1/1_Confidence_1.000_Length_557 tps:THAPSDRAFT_2848 0.985 1.30E-10 4.60E-12 photosystem II PsbU protein 11.050 1.833 2.28E-08 Locus_389_Transcript_1/10_Confidence_0.276_Length_2836 tps:THAPSDRAFT_bd1611 1 0.00E+00 0 photosystem I P700 chlorophyll a apoprotein A2 -4.108 1.052 6.47E-04 Locus_389_Transcript_10/10_Confidence_0.345_Length_4127 tps:THAPSDRAFT_bd1611 1 0.00E+00 0 photosystem I P700 chlorophyll a apoprotein A2 -4.553 1.017 6.47E-05 Locus_389_Transcript_2/10_Confidence_0.190_Length_2256 tps:THAPSDRAFT_bd1611 1 1.10E-40 3.80E-42 photosystem I P700 chlorophyll a apoprotein A2 -3.518 0.890 5.38E-04 Locus_389_Transcript_3/10_Confidence_0.190_Length_2256 tps:THAPSDRAFT_bd1611 1 0.00E+00 0 photosystem I P700 chlorophyll a apoprotein A2 -4.120 1.056 6.58E-04 Locus_389_Transcript_4/10_Confidence_0.138_Length_2057 tps:THAPSDRAFT_bd1611 1 1.10E-68 3.90E-70 photosystem I P700 chlorophyll a apoprotein A2 -3.872 0.929 2.34E-04 Locus_389_Transcript_5/10_Confidence_0.138_Length_2057 tps:THAPSDRAFT_bd1611 1 0.00E+00 0 photosystem I P700 chlorophyll a apoprotein A2 -3.485 0.918 9.56E-04 Locus_389_Transcript_6/10_Confidence_0.310_Length_4063 tps:THAPSDRAFT_bd1611 1 0.00E+00 0 photosystem I P700 chlorophyll a apoprotein A2 -3.778 1.008 1.13E-03 Locus_389_Transcript_7/10_Confidence_0.310_Length_4063 tps:THAPSDRAFT_bd1611 1 0.00E+00 0 photosystem I P700 chlorophyll a apoprotein A2 -4.482 1.075 2.32E-04 Locus_389_Transcript_8/10_Confidence_0.345_Length_4127 tps:THAPSDRAFT_bd1611 1 0.00E+00 0 photosystem I P700 chlorophyll a apoprotein A2 -3.992 1.038 8.06E-04 Locus_389_Transcript_9/10_Confidence_0.069_Length_3171 tps:THAPSDRAFT_bd1611 1 4.00E-271 1.00E-272 photosystem I P700 chlorophyll a apoprotein A2 -3.269 0.909 1.89E-03 Locus_3983_Transcript_1/4_Confidence_0.375_Length_1188 tps:THAPSDRAFT_bd1039 0.998 9.20E-22 3.30E-23 PsbV, photosystem II cytochrome c550 -4.807 1.449 4.20E-03 Locus_4311_Transcript_1/6_Confidence_0.250_Length_529 tps:THAPSDRAFT_35934 0.983 5.40E-10 1.90E-11 cytochrome c6 8.229 1.045 9.12E-14 Locus_4311_Transcript_2/6_Confidence_0.250_Length_529 tps:THAPSDRAFT_35934 0.988 3.60E-12 1.30E-13 cytochrome c6 8.368 0.986 6.95E-16 Locus_4311_Transcript_3/6_Confidence_0.333_Length_538 tps:THAPSDRAFT_bd1039 0.991 1.50E-14 5.20E-16 PsbV, photosystem II cytochrome c550 8.046 0.969 3.17E-15 Locus_4311_Transcript_4/6_Confidence_0.333_Length_538 tps:THAPSDRAFT_bd1039 0.991 1.50E-14 5.20E-16 PsbV, photosystem II cytochrome c550 8.782 0.977 1.04E-17 Locus_4311_Transcript_5/6_Confidence_0.333_Length_513 tps:THAPSDRAFT_35934 0.989 3.20E-12 1.10E-13 cytochrome c6 8.863 0.869 1.49E-22 Locus_4311_Transcript_6/6_Confidence_0.333_Length_513 tps:THAPSDRAFT_35934 0.989 3.20E-12 1.10E-13 cytochrome c6 8.801 0.920 6.31E-20 Locus_4776_Transcript_2/4_Confidence_0.545_Length_1983 tps:THAPSDRAFT_2848 0.958 3.60E-06 1.30E-07 photosystem II PsbU protein -3.802 1.138 3.94E-03 Locus_484_Transcript_3/4_Confidence_0.750_Length_1013 tps:THAPSDRAFT_25892 0.999 5.80E-26 2.10E-27 ferredoxin--NADP+ reductase -3.372 0.834 3.84E-04 Locus_484_Transcript_4/4_Confidence_0.750_Length_1013 tps:THAPSDRAFT_25892 0.999 1.30E-26 4.70E-28 ferredoxin--NADP+ reductase -3.903 1.181 4.37E-03 Locus_5607_Transcript_1/7_Confidence_0.444_Length_664 tps:THAPSDRAFT_25892 0.985 6.00E-11 2.10E-12 ferredoxin--NADP+ reductase -4.227 0.918 3.71E-05 Locus_582_Transcript_16/18_Confidence_0.320_Length_999 tps:THAPSDRAFT_270210 0.998 3.60E-25 1.30E-26 PsbO, photosystem II oxygen-evolving enhancer protein -2.537 0.510 6.54E-06 Locus_7060_Transcript_1/1_Confidence_1.000_Length_879 tps:THAPSDRAFT_bd467 1 1.90E-74 6.90E-76 petB, cytochrome b6 8.515 0.814 1.19E-23 Locus_745_Transcript_11/12_Confidence_0.283_Length_605 tps:THAPSDRAFT_270242 0.997 1.30E-20 4.70E-22 PsbM, photosystem II PsbM protein -3.058 0.647 2.14E-05 Locus_745_Transcript_12/12_Confidence_0.261_Length_381 tps:THAPSDRAFT_270242 0.998 3.90E-23 1.40E-24 PsbM, photosystem II PsbM protein -2.675 0.729 1.47E-03 Locus_7489_Transcript_1/4_Confidence_0.375_Length_583 tps:THAPSDRAFT_25892 0.999 1.10E-28 4.10E-30 ferredoxin--NADP+ reductase 9.952 1.423 5.11E-11 Locus_7489_Transcript_2/4_Confidence_0.375_Length_583 tps:THAPSDRAFT_25892 0.984 1.20E-09 4.30E-11 ferredoxin--NADP+ reductase 9.977 1.586 4.70E-09 Locus_7489_Transcript_3/4_Confidence_0.375_Length_2122 tps:THAPSDRAFT_25892 0.999 1.50E-28 5.40E-30 ferredoxin--NADP+ reductase 9.034 1.247 8.97E-12 Locus_7489_Transcript_4/4_Confidence_0.375_Length_2122 tps:THAPSDRAFT_25892 0.999 1.50E-28 5.40E-30 ferredoxin--NADP+ reductase 9.003 1.186 7.61E-13 Locus_7726_Transcript_1/4_Confidence_0.400_Length_415 tps:THAPSDRAFT_25892 0.991 2.50E-13 8.90E-15 ferredoxin--NADP+ reductase -3.539 1.095 5.34E-03 Locus_7991_Transcript_1/2_Confidence_0.750_Length_7608 tps:THAPSDRAFT_34554 1 2.90E-55 1.00E-56 psbW, photosystem II 13kDa protein -6.328 1.075 5.19E-08 Locus_7991_Transcript_2/2_Confidence_0.750_Length_7608 tps:THAPSDRAFT_34554 1 2.70E-55 9.60E-57 psbW, photosystem II 13kDa protein -4.467 0.920 1.16E-05 Locus_801_Transcript_16/18_Confidence_0.030_Length_686 tps:THAPSDRAFT_bd1048 0.99 1.40E-13 5.00E-15 photosystem I subunit VII -3.579 1.155 7.77E-03 Locus_801_Transcript_17/18_Confidence_0.167_Length_1662 tps:THAPSDRAFT_bd1048 0.988 1.00E-12 3.70E-14 photosystem I subunit VII -2.961 0.872 3.34E-03 Locus_8152_Transcript_1/2_Confidence_0.800_Length_428 tps:THAPSDRAFT_bd573 0.964 9.60E-06 3.40E-07 apocytochrome f 4.684 1.398 3.81E-03 Locus_894_Transcript_1/9_Confidence_0.231_Length_1996 tps:THAPSDRAFT_bd1339 1 1.30E-93 4.70E-95 photosystem I subunit II -4.822 1.170 2.84E-04 Locus_894_Transcript_2/9_Confidence_0.231_Length_1996 tps:THAPSDRAFT_bd1339 1 1.30E-93 4.70E-95 photosystem I subunit II -4.764 1.138 2.19E-04 Locus_894_Transcript_3/9_Confidence_0.154_Length_721 tps:THAPSDRAFT_bd1342 1 2.10E-78 7.70E-80 photosystem I subunit XI -4.410 0.780 1.95E-07 Locus_894_Transcript_5/9_Confidence_0.154_Length_1640 tps:THAPSDRAFT_bd1339 1 4.30E-95 1.60E-96 photosystem I subunit II -4.306 1.138 9.93E-04 Locus_894_Transcript_6/9_Confidence_0.154_Length_1640 tps:THAPSDRAFT_bd1339 1 4.30E-95 1.60E-96 photosystem I subunit II -4.221 0.975 1.21E-04 Locus_9675_Transcript_1/2_Confidence_0.667_Length_2597 tps:THAPSDRAFT_bd1048 0.96 1.20E-06 4.40E-08 photosystem I subunit VII 7.873 0.953 4.31E-15 Locus_9675_Transcript_2/2_Confidence_0.667_Length_2597 tps:THAPSDRAFT_bd1048 0.96 1.20E-06 4.40E-08 photosystem I subunit VII 7.576 1.398 6.84E-07 Locus_9690_Transcript_1/2_Confidence_0.750_Length_1749 tps:THAPSDRAFT_bd573 0.921 2.90E-04 1.00E-05 apocytochrome f 10.678 0.632 1.32E-60 Locus_9845_Transcript_7/10_Confidence_0.286_Length_504 tps:THAPSDRAFT_2848 0.943 6.10E-05 2.20E-06 photosystem II PsbU protein 9.099 1.001 4.53E-18 Locus_9845_Transcript_8/10_Confidence_0.286_Length_504 tps:THAPSDRAFT_2848 0.907 3.50E-04 1.30E-05 photosystem II PsbU protein 8.437 1.395 2.05E-08

**Fold Change is calculated as an average of the replicates Table S15: Transcipts Mapping to T. pseudonana Glycolysis Homlogs with Gene Expression of Dark Recovered Cells After UVB Irradiation Probability of Evalue of Matching p-value of Matching Fold Change Compared Standard Error of p-value of Transcript Name T. pseudonana Hit ID Matching Homolog Homolog Homolog Homolog Hit Name to Non-irradiated Cells Fold Change Fold Change Locus_10551_Transcript_1/5_Confidence_0.125_Length_918 tps:THAPSDRAFT_40391 1 4.20E-37 2.80E-38 ENO1 alpha enolase (EC:4.2.1.11) 8.200 1.087 1.03E-12 Locus_10551_Transcript_2/5_Confidence_0.250_Length_1162 tps:THAPSDRAFT_40391 1 1.30E-36 8.80E-38 ENO1 alpha enolase (EC:4.2.1.11) 8.172 1.134 1.17E-11 Locus_10551_Transcript_4/5_Confidence_0.312_Length_1968 tps:THAPSDRAFT_40391 1 1.50E-33 9.80E-35 ENO1 alpha enolase (EC:4.2.1.11) 8.795 1.037 7.59E-16 Locus_11178_Transcript_1/1_Confidence_1.000_Length_471 tps:THAPSDRAFT_268621 0.999 1.90E-27 1.30E-28 PGM2 phosphoglucomutase (EC:5.4.2.2) 7.845 1.457 8.31E-07 Locus_1250_Transcript_1/1_Confidence_1.000_Length_511 tps:THAPSDRAFT_256250 0.999 6.80E-28 4.50E-29 hypothetical protein fructose-1,6-bisphosphatase I (EC:3.1.3.11) 6.485 1.339 1.22E-05 Locus_13106_Transcript_1/1_Confidence_1.000_Length_909 tps:THAPSDRAFT_270301 0.98 7.30E-09 4.90E-10 hypothetical protein glucose-6-phosphate isomerase (EC:5.3.1.9) 8.416 1.412 3.41E-08 Locus_13308_Transcript_1/1_Confidence_1.000_Length_561 tps:THAPSDRAFT_268621 0.997 2.60E-20 1.70E-21 PGM2 phosphoglucomutase (EC:5.4.2.2) 11.156 1.139 7.23E-21 Locus_1331_Transcript_2/2_Confidence_0.714_Length_997 tps:THAPS_30380 0.911 1.50E-04 1.00E-05 TPI2 triose-phosphate isomerase (EC:5.3.1.1) -3.455 0.652 1.29E-06 Locus_13689_Transcript_2/2_Confidence_0.917_Length_1116 tps:THAPS_30380 0.964 3.70E-05 2.50E-06 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 3.882 0.681 1.51E-07 Locus_14774_Transcript_1/1_Confidence_1.000_Length_1025 tps:THAPSDRAFT_15858 0.935 1.70E-03 1.20E-04 hypothetical protein aldose 1-epimerase (EC:5.1.3.3) 6.786 0.908 1.78E-12 Locus_15368_Transcript_1/1_Confidence_1.000_Length_267 tps:THAPSDRAFT_28239 0.927 6.10E-04 4.10E-05 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 8.317 1.897 9.63E-05 Locus_15534_Transcript_1/1_Confidence_1.000_Length_856 tps:THAPSDRAFT_28239 0.933 1.90E-04 1.30E-05 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 7.905 0.912 1.67E-16 Locus_16150_Transcript_1/2_Confidence_0.750_Length_1108 tps:THAPSDRAFT_28239 1 7.20E-47 4.80E-48 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 8.034 1.291 7.10E-09 Locus_16150_Transcript_2/2_Confidence_0.750_Length_1108 tps:THAPSDRAFT_28239 1 7.20E-47 4.80E-48 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 7.872 1.482 1.19E-06 Locus_16903_Transcript_1/2_Confidence_0.667_Length_839 tps:THAPSDRAFT_40391 1 4.30E-49 2.90E-50 ENO1 alpha enolase (EC:4.2.1.11) 9.366 1.308 1.61E-11 Locus_16903_Transcript_2/2_Confidence_0.667_Length_820 tps:THAPSDRAFT_40391 1 1.20E-46 8.20E-48 ENO1 alpha enolase (EC:4.2.1.11) 7.824 1.204 1.32E-09 Locus_17185_Transcript_3/5_Confidence_0.375_Length_615 tps:THAPS_30380 0.938 1.40E-04 9.40E-06 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 8.481 1.690 5.30E-06 Locus_17271_Transcript_1/1_Confidence_1.000_Length_568 tps:THAPSDRAFT_263425 0.996 1.20E-18 8.10E-20 hypothetical protein probable phosphoglycerate mutase (EC:5.4.2.12) 3.980 1.110 1.96E-03 Locus_17368_Transcript_1/1_Confidence_1.000_Length_744 tps:THAPSDRAFT_270301 0.985 1.60E-10 1.00E-11 hypothetical protein glucose-6-phosphate isomerase (EC:5.3.1.9) 7.504 0.959 1.31E-13 Locus_17904_Transcript_1/1_Confidence_1.000_Length_196 tps:THAPSDRAFT_28239 0.995 8.10E-18 5.40E-19 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 3.804 1.042 1.56E-03 Locus_18078_Transcript_1/1_Confidence_1.000_Length_446 tps:THAPSDRAFT_270301 0.979 8.50E-08 5.60E-09 hypothetical protein glucose-6-phosphate isomerase (EC:5.3.1.9) 8.256 1.436 1.13E-07 Locus_1924_Transcript_10/10_Confidence_0.604_Length_594 tps:THAPS_30380 1 2.60E-57 1.70E-58 TPI2 triose-phosphate isomerase (EC:5.3.1.1) -1.865 0.549 3.35E-03 Locus_1924_Transcript_2/10_Confidence_0.562_Length_587 tps:THAPS_30380 1 1.70E-55 1.10E-56 TPI2 triose-phosphate isomerase (EC:5.3.1.1) -1.677 0.463 1.71E-03 Locus_1924_Transcript_6/10_Confidence_0.354_Length_535 tps:THAPS_30380 1 6.50E-58 4.30E-59 TPI2 triose-phosphate isomerase (EC:5.3.1.1) -1.905 0.557 3.12E-03 Locus_21016_Transcript_1/1_Confidence_1.000_Length_247 tps:THAPS_30380 0.929 7.60E-05 5.10E-06 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 7.951 1.280 7.70E-09 Locus_22662_Transcript_1/1_Confidence_1.000_Length_1164 tps:THAPSDRAFT_17651 1 1.30E-36 8.90E-38 hypothetical protein 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (EC:5.4.2.11) 1.454 0.466 7.36E-03 Locus_238_Transcript_8/10_Confidence_0.235_Length_293 tps:THAPSDRAFT_25116 0.999 1.50E-25 1.00E-26 PGK5 phosphoglycerate kinase (EC:2.7.2.3) -2.585 0.672 8.08E-04 Locus_23866_Transcript_1/4_Confidence_0.300_Length_451 tps:THAPSDRAFT_11761 1 1.70E-69 1.20E-70 ALDO4 Fructose-1,6-bisphosphatase aldolase (EC:4.1.2.13) 8.078 0.924 8.86E-17 Locus_23866_Transcript_2/4_Confidence_0.300_Length_451 tps:THAPSDRAFT_11761 1 1.60E-64 1.10E-65 ALDO4 Fructose-1,6-bisphosphatase aldolase (EC:4.1.2.13) 8.685 0.750 7.90E-29 Locus_23866_Transcript_3/4_Confidence_0.400_Length_1020 tps:THAPSDRAFT_11761 1 4.30E-83 2.90E-84 ALDO4 Fructose-1,6-bisphosphatase aldolase (EC:4.1.2.13) 7.517 0.953 8.12E-14 Locus_23866_Transcript_4/4_Confidence_0.400_Length_1020 tps:THAPSDRAFT_11761 1 4.30E-83 2.90E-84 ALDO4 Fructose-1,6-bisphosphatase aldolase (EC:4.1.2.13) 7.603 0.802 1.33E-19 Locus_24795_Transcript_1/2_Confidence_0.667_Length_627 tps:THAPSDRAFT_25116 1 4.50E-77 3.00E-78 PGK5 phosphoglycerate kinase (EC:2.7.2.3) 8.979 1.204 2.02E-12 Locus_24795_Transcript_2/2_Confidence_0.667_Length_600 tps:THAPSDRAFT_25116 1 1.30E-77 8.70E-79 PGK5 phosphoglycerate kinase (EC:2.7.2.3) 8.807 1.238 2.25E-11 Locus_25984_Transcript_1/1_Confidence_1.000_Length_410 tps:THAPSDRAFT_256250 0.999 1.10E-28 7.30E-30 hypothetical protein fructose-1,6-bisphosphatase I (EC:3.1.3.11) 7.929 1.002 6.50E-14 Locus_26246_Transcript_1/1_Confidence_0.556_Length_186 tps:THAPS_30380 0.961 3.30E-06 2.20E-07 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 5.797 1.325 9.95E-05 Locus_26443_Transcript_1/1_Confidence_1.000_Length_381 tps:THAPSDRAFT_28239 0.998 2.10E-22 1.40E-23 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 5.304 1.365 6.92E-04 Locus_26565_Transcript_1/1_Confidence_1.000_Length_247 tps:THAPSDRAFT_270301 0.999 7.90E-29 5.30E-30 hypothetical protein glucose-6-phosphate isomerase (EC:5.3.1.9) 9.344 1.919 1.08E-05 Locus_26779_Transcript_1/1_Confidence_1.000_Length_1147 tps:THAPSDRAFT_15858 1 4.20E-54 2.80E-55 hypothetical protein aldose 1-epimerase (EC:5.1.3.3) 5.654 0.940 2.46E-08 Locus_27871_Transcript_1/1_Confidence_1.000_Length_289 tps:THAPSDRAFT_25116 0.999 2.20E-28 1.50E-29 PGK5 phosphoglycerate kinase (EC:2.7.2.3) 8.459 1.341 4.23E-09 Locus_28006_Transcript_1/1_Confidence_1.000_Length_643 tps:THAPSDRAFT_40391 1 1.20E-36 8.10E-38 ENO1 alpha enolase (EC:4.2.1.11) 7.240 1.474 8.79E-06 Locus_28470_Transcript_1/1_Confidence_1.000_Length_592 tps:THAPSDRAFT_22345 0.991 2.00E-13 1.30E-14 PYK2 pyruvate kinase (EC:2.7.1.40) 8.016 1.271 4.26E-09 Locus_29258_Transcript_1/1_Confidence_1.000_Length_535 tps:THAPSDRAFT_268621 1 7.50E-35 5.00E-36 PGM2 phosphoglucomutase (EC:5.4.2.2) 7.674 1.250 1.18E-08 Locus_29354_Transcript_1/1_Confidence_1.000_Length_541 tps:THAPSDRAFT_28239 0.972 6.20E-07 4.10E-08 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 8.399 0.648 7.19E-36 Locus_29833_Transcript_1/2_Confidence_0.750_Length_407 tps:THAPS_30380 1 4.80E-54 3.20E-55 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 8.121 1.551 1.79E-06 Locus_29833_Transcript_2/2_Confidence_0.750_Length_245 tps:THAPS_30380 1 4.40E-34 2.90E-35 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 8.477 1.359 6.54E-09 Locus_30184_Transcript_1/1_Confidence_1.000_Length_1031 tps:THAPSDRAFT_28239 0.925 2.20E-04 1.40E-05 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 4.220 0.965 1.01E-04 Locus_30794_Transcript_1/1_Confidence_1.000_Length_201 tps:THAPSDRAFT_28239 0.991 1.40E-14 9.20E-16 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 2.185 0.606 1.84E-03 Locus_31066_Transcript_1/1_Confidence_1.000_Length_517 tps:THAPSDRAFT_31232 1 6.10E-36 4.10E-37 PFK1 6-phosphofructokinase (EC:2.7.1.90) 6.617 0.860 3.49E-13 Locus_32755_Transcript_1/1_Confidence_1.000_Length_353 tps:THAPSDRAFT_28239 0.91 3.80E-04 2.50E-05 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 7.877 1.611 9.75E-06 Locus_32960_Transcript_1/1_Confidence_0.667_Length_202 tps:THAPSDRAFT_25116 0.996 7.00E-19 4.70E-20 PGK5 phosphoglycerate kinase (EC:2.7.2.3) 6.004 1.639 1.51E-03 Locus_33112_Transcript_1/1_Confidence_1.000_Length_350 tps:THAPSDRAFT_28239 1 2.40E-39 1.60E-40 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 9.037 1.015 2.25E-17 Locus_356_Transcript_2/4_Confidence_0.250_Length_1192 tps:THAPSDRAFT_270301 0.977 9.80E-08 6.60E-09 hypothetical protein glucose-6-phosphate isomerase (EC:5.3.1.9) 8.278 1.100 1.22E-12 Locus_356_Transcript_3/4_Confidence_0.417_Length_2330 tps:THAPSDRAFT_270301 0.983 1.60E-09 1.10E-10 hypothetical protein glucose-6-phosphate isomerase (EC:5.3.1.9) 9.071 0.959 1.62E-19 Locus_356_Transcript_4/4_Confidence_0.417_Length_2330 tps:THAPSDRAFT_270301 0.983 1.60E-09 1.10E-10 hypothetical protein glucose-6-phosphate isomerase (EC:5.3.1.9) 8.438 1.291 1.04E-09 Locus_417_Transcript_1/2_Confidence_0.750_Length_885 tps:THAPS_30380 1 1.60E-46 1.10E-47 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 8.578 1.290 5.07E-10 Locus_417_Transcript_2/2_Confidence_0.500_Length_822 tps:THAPS_30380 1 2.30E-47 1.60E-48 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 8.731 1.193 5.32E-12 Locus_4647_Transcript_3/4_Confidence_0.375_Length_925 tps:THAPSDRAFT_28239 1 2.70E-66 1.80E-67 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 3.400 1.084 6.98E-03 Locus_4852_Transcript_2/8_Confidence_0.250_Length_284 tps:THAPS_30380 0.955 9.20E-06 6.10E-07 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 7.109 0.440 1.92E-55 Locus_4852_Transcript_8/8_Confidence_0.417_Length_664 tps:THAPS_30380 0.916 9.80E-05 6.50E-06 TPI2 triose-phosphate isomerase (EC:5.3.1.1) 7.326 0.874 1.70E-15 Locus_7499_Transcript_5/7_Confidence_0.500_Length_1004 tps:THAPSDRAFT_28239 0.925 3.90E-05 2.60E-06 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 10.071 0.869 6.60E-29 Locus_7572_Transcript_1/1_Confidence_1.000_Length_420 tps:THAPSDRAFT_28239 0.989 9.90E-13 6.60E-14 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 7.910 1.321 2.90E-08 Locus_9060_Transcript_1/1_Confidence_1.000_Length_453 tps:THAPSDRAFT_263425 0.998 2.20E-21 1.50E-22 hypothetical protein probable phosphoglycerate mutase (EC:5.4.2.12) 5.390 1.200 6.04E-05 Locus_9713_Transcript_1/1_Confidence_1.000_Length_367 tps:THAPSDRAFT_28239 0.958 5.20E-05 3.40E-06 glyceraldehyde-3-phosphate dehydrogenase precursor (EC:1.2.1.12) 6.744 1.615 2.27E-04

**Fold Change is calculated as an average of the replicates Table S16: Transcipts Mapping to T. pseudonana TCA Homlogs with Gene Expression of Dark Recovered Cells After UVB Irradiation

Probability of Evalue of Matching p-value of Fold Change Compared Standard Error of p-value of Transcript Name T. pseudonana Hit ID Matching Homolog Homolog Matching Homolog Homolog Hit Name to Non-irradiated Cells Fold Change Fold Change Locus_10413_Transcript_1/6_Confidence_0.375_Length_735 tps:THAPSDRAFT_269718 0.977 9.00E-08 8.20E-09 K00164 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2) 11.649 1.487 1.20E-13 Locus_10413_Transcript_2/6_Confidence_0.375_Length_735 tps:THAPSDRAFT_16169 0.997 6.50E-21 5.90E-22 K00161 pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1) 10.170 1.563 1.23E-09 Locus_10413_Transcript_5/6_Confidence_0.375_Length_1204 tps:THAPSDRAFT_16169 0.998 8.80E-23 8.00E-24 K00161 pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1) 9.604 1.338 1.43E-11 Locus_10413_Transcript_6/6_Confidence_0.375_Length_1204 tps:THAPSDRAFT_16169 0.998 8.80E-23 8.00E-24 K00161 pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1) 9.383 1.304 1.29E-11 Locus_10815_Transcript_2/2_Confidence_0.714_Length_714 tps:THAPSDRAFT_32945 0.962 7.90E-07 7.20E-08 SDH1 K00235 succinate dehydrogenase (EC:1.3.5.1) 2.249 0.508 8.00E-05 Locus_11211_Transcript_1/1_Confidence_1.000_Length_1998 tps:THAPSDRAFT_20726 0.956 1.90E-05 1.70E-06 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 2.195 0.647 3.39E-03 Locus_11558_Transcript_1/1_Confidence_1.000_Length_533 tps:THAPSDRAFT_269718 0.996 4.10E-18 3.70E-19 K00164 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2) 8.172 1.221 3.85E-10 Locus_11625_Transcript_1/6_Confidence_0.214_Length_473 tps:THAPSDRAFT_24399 0.998 2.30E-23 2.10E-24 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) 9.727 1.104 4.98E-17 Locus_11625_Transcript_2/6_Confidence_0.214_Length_473 tps:THAPSDRAFT_24399 0.993 1.80E-14 1.60E-15 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) 9.475 1.285 3.61E-12 Locus_11625_Transcript_5/6_Confidence_0.357_Length_1083 tps:THAPSDRAFT_24399 1 7.60E-44 6.90E-45 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) 9.254 1.258 4.18E-12 Locus_11625_Transcript_6/6_Confidence_0.357_Length_1083 tps:THAPSDRAFT_24399 1 7.60E-44 6.90E-45 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) 9.796 1.200 9.80E-15 Locus_12052_Transcript_2/4_Confidence_0.375_Length_1122 tps:THAPSDRAFT_24399 0.988 8.80E-12 8.00E-13 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) 3.419 0.656 2.01E-06 Locus_12052_Transcript_3/4_Confidence_0.375_Length_1122 tps:THAPSDRAFT_24399 0.988 8.80E-12 8.00E-13 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) 3.270 0.541 2.06E-08 Locus_12169_Transcript_1/3_Confidence_0.286_Length_1456 tps:THAPSDRAFT_36971 1 2.10E-72 1.90E-73 K00658 2-oxoglutarate dehydrogenase E2 component (EC:2.3.1.61) 9.935 1.067 6.06E-19 Locus_12169_Transcript_2/3_Confidence_0.714_Length_2492 tps:THAPSDRAFT_36971 1 2.70E-67 2.50E-68 K00658 2-oxoglutarate dehydrogenase E2 component (EC:2.3.1.61) 10.430 1.076 1.87E-20 Locus_12169_Transcript_3/3_Confidence_0.571_Length_2427 tps:THAPSDRAFT_36971 1 4.70E-68 4.30E-69 K00658 2-oxoglutarate dehydrogenase E2 component (EC:2.3.1.61) 10.465 0.958 9.61E-26 Locus_13676_Transcript_1/2_Confidence_0.600_Length_881 tps:THAPSDRAFT_269718 0.999 2.90E-28 2.60E-29 K00164 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2) 10.541 1.195 4.41E-17 Locus_13676_Transcript_2/2_Confidence_0.800_Length_884 tps:THAPSDRAFT_269718 0.999 3.70E-30 3.40E-31 K00164 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2) 9.662 1.494 1.58E-09 Locus_13689_Transcript_2/2_Confidence_0.917_Length_1116 tps:THAPSDRAFT_11075 0.967 3.00E-05 2.70E-06 K01958 pyruvate carboxylase (EC:6.4.1.1) 3.882 0.681 1.51E-07 Locus_14123_Transcript_1/10_Confidence_0.333_Length_675 tps:THAPSDRAFT_11075 0.997 1.30E-20 1.20E-21 K01958 pyruvate carboxylase (EC:6.4.1.1) 9.799 0.906 2.98E-25 Locus_14123_Transcript_10/10_Confidence_0.333_Length_646 tps:THAPSDRAFT_31362 0.997 2.40E-20 2.20E-21 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 9.739 0.896 1.64E-25 Locus_14123_Transcript_2/10_Confidence_0.333_Length_675 tps:THAPSDRAFT_11075 0.997 1.30E-20 1.20E-21 K01958 pyruvate carboxylase (EC:6.4.1.1) 9.601 0.786 5.66E-32 Locus_14123_Transcript_3/10_Confidence_0.133_Length_237 tps:THAPSDRAFT_31362 0.987 2.40E-11 2.20E-12 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 9.276 1.396 5.21E-10 Locus_14123_Transcript_5/10_Confidence_0.300_Length_416 tps:THAPSDRAFT_31362 0.998 8.80E-22 8.00E-23 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 9.934 1.297 4.51E-13 Locus_14123_Transcript_6/10_Confidence_0.300_Length_416 tps:THAPSDRAFT_11075 0.992 2.00E-15 1.80E-16 K01958 pyruvate carboxylase (EC:6.4.1.1) 10.010 1.455 1.10E-10 Locus_14123_Transcript_7/10_Confidence_0.267_Length_349 tps:THAPSDRAFT_31362 0.996 7.90E-19 7.20E-20 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 9.897 1.455 1.83E-10 Locus_14123_Transcript_8/10_Confidence_0.267_Length_349 tps:THAPSDRAFT_31362 0.994 2.20E-16 2.00E-17 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 9.820 1.588 8.97E-09 Locus_14123_Transcript_9/10_Confidence_0.333_Length_646 tps:THAPSDRAFT_31362 0.997 2.40E-20 2.20E-21 SCS1 K01900 succinyl-CoA synthetase beta subunit (EC:6.2.1.4 6.2.1.5) 9.375 0.989 1.32E-19 Locus_14435_Transcript_1/1_Confidence_1.000_Length_517 tps:THAPSDRAFT_24399 0.993 9.30E-15 8.40E-16 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) 6.123 1.380 7.68E-05 Locus_15085_Transcript_1/1_Confidence_1.000_Length_764 tps:THAPSDRAFT_20726 0.962 2.10E-06 1.90E-07 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 8.618 0.535 3.85E-55 Locus_15368_Transcript_1/1_Confidence_1.000_Length_267 tps:THAPSDRAFT_20726 0.981 5.30E-09 4.80E-10 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 8.317 1.897 9.63E-05 Locus_15534_Transcript_1/1_Confidence_1.000_Length_856 tps:THAPSDRAFT_20726 0.984 2.40E-10 2.20E-11 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 7.905 0.912 1.67E-16 Locus_16419_Transcript_1/6_Confidence_0.333_Length_1071 tps:THAPSDRAFT_11411 0.996 5.20E-20 4.70E-21 CSN1 K01647 citrate synthase (EC:2.3.3.1) 8.225 0.973 9.70E-16 Locus_16419_Transcript_2/6_Confidence_0.278_Length_1070 tps:THAPSDRAFT_11411 0.994 4.80E-17 4.40E-18 CSN1 K01647 citrate synthase (EC:2.3.3.1) 8.123 1.283 3.66E-09 Locus_16419_Transcript_3/6_Confidence_0.278_Length_1070 tps:THAPSDRAFT_11411 1 1.20E-77 1.10E-78 CSN1 K01647 citrate synthase (EC:2.3.3.1) 7.691 1.080 2.12E-11 Locus_16419_Transcript_4/6_Confidence_0.444_Length_1216 tps:THAPSDRAFT_11411 0.995 1.60E-18 1.50E-19 CSN1 K01647 citrate synthase (EC:2.3.3.1) 8.223 0.724 8.58E-28 Locus_16419_Transcript_5/6_Confidence_0.389_Length_1882 tps:THAPSDRAFT_11411 1 7.80E-80 7.10E-81 CSN1 K01647 citrate synthase (EC:2.3.3.1) 7.884 1.119 3.56E-11 Locus_16419_Transcript_6/6_Confidence_0.389_Length_1100 tps:THAPSDRAFT_11411 1 4.70E-77 4.20E-78 CSN1 K01647 citrate synthase (EC:2.3.3.1) 8.376 1.044 2.83E-14 Locus_16553_Transcript_1/1_Confidence_1.000_Length_362 tps:THAPSDRAFT_24399 0.997 7.20E-20 6.60E-21 DLDH2 K00382 dihydrolipoamide dehydrogenase (EC:1.8.1.4) 4.599 1.005 4.18E-05 Locus_168_Transcript_3/9_Confidence_0.350_Length_2140 tps:THAPSDRAFT_16169 0.996 5.10E-18 4.60E-19 K00161 pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1) -5.335 1.178 5.12E-05 Locus_168_Transcript_5/9_Confidence_0.400_Length_1635 tps:THAPSDRAFT_16169 0.996 7.30E-19 6.70E-20 K00161 pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1) -5.495 1.230 6.74E-05 Locus_168_Transcript_6/9_Confidence_0.250_Length_1737 tps:THAPSDRAFT_16169 0.996 2.20E-18 2.00E-19 K00161 pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1) -4.261 1.048 3.50E-04 Locus_168_Transcript_9/9_Confidence_0.350_Length_2140 tps:THAPSDRAFT_16169 0.995 4.90E-18 4.50E-19 K00161 pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1) -5.247 1.077 1.06E-05 Locus_16860_Transcript_1/6_Confidence_0.250_Length_819 tps:THAPSDRAFT_11075 0.999 3.80E-24 3.50E-25 K01958 pyruvate carboxylase (EC:6.4.1.1) 8.810 0.872 4.01E-22 Locus_16860_Transcript_2/6_Confidence_0.250_Length_819 tps:THAPSDRAFT_11075 1 3.20E-37 2.90E-38 K01958 pyruvate carboxylase (EC:6.4.1.1) 8.495 0.785 2.74E-25 Locus_16860_Transcript_3/6_Confidence_0.125_Length_1061 tps:THAPSDRAFT_11075 0.999 2.60E-25 2.40E-26 K01958 pyruvate carboxylase (EC:6.4.1.1) 7.008 1.058 5.98E-10 Locus_16860_Transcript_4/6_Confidence_0.125_Length_1061 tps:THAPSDRAFT_11075 0.999 2.60E-25 2.40E-26 K01958 pyruvate carboxylase (EC:6.4.1.1) 7.145 1.065 3.39E-10 Locus_16860_Transcript_5/6_Confidence_0.375_Length_1098 tps:THAPSDRAFT_11075 0.991 8.80E-14 8.00E-15 K01958 pyruvate carboxylase (EC:6.4.1.1) 9.043 0.822 4.56E-26 Locus_16860_Transcript_6/6_Confidence_0.375_Length_1098 tps:THAPSDRAFT_11075 0.991 8.80E-14 8.00E-15 K01958 pyruvate carboxylase (EC:6.4.1.1) 9.447 0.788 7.83E-31 Locus_18101_Transcript_1/2_Confidence_0.667_Length_432 tps:THAPSDRAFT_11075 0.912 7.60E-04 6.90E-05 K01958 pyruvate carboxylase (EC:6.4.1.1) 8.569 1.428 2.66E-08 Locus_18366_Transcript_1/2_Confidence_0.857_Length_363 tps:THAPSDRAFT_36971 1 1.70E-38 1.50E-39 K00658 2-oxoglutarate dehydrogenase E2 component (EC:2.3.1.61) 9.131 1.187 3.49E-13 Locus_18366_Transcript_2/2_Confidence_0.571_Length_297 tps:THAPSDRAFT_36971 1 2.90E-39 2.70E-40 K00658 2-oxoglutarate dehydrogenase E2 component (EC:2.3.1.61) 8.609 1.148 1.44E-12 Locus_19140_Transcript_1/1_Confidence_1.000_Length_572 tps:THAPSDRAFT_21177 0.99 6.70E-12 6.10E-13 LAT1_2 dihydrolipoamide s-acetyltransferase (EC:2.3.1.12) 6.102 1.396 1.02E-04 Locus_19510_Transcript_1/1_Confidence_1.000_Length_1081 tps:THAPSDRAFT_20726 0.986 2.40E-10 2.20E-11 MDH1 K00026 malate dehydrogenase (EC:1.1.1.37) 4.799 0.851 2.09E-07 Locus_19849_Transcript_1/1_Confidence_1.000_Length_590 tps:THAPSDRAFT_11075 0.954 2.00E-04 1.80E-05 K01958 pyruvate carboxylase (EC:6.4.1.1) 9.003 1.124 3.21E-14 Locus_19949_Transcript_1/10_Confidence_0.156_Length_619 tps:THAPSDRAFT_36971 0.992 1.10E-14 1.00E-15 K00658 2-oxoglutarate dehydrogenase E2 component (EC:2.3.1.61) 8.368 1.106 8.84E-13 Locus_19949_Transcript_10/10_Confidence_0.375_Length_1508 tps:THAPSDRAFT_269718 1 4.10E-63 3.70E-64 K00164 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2) 9.626 0.729 3.23E-37 Locus_19949_Transcript_2/10_Confidence_0.375_Length_1275 tps:THAPSDRAFT_269718 0.999 9.80E-27 8.90E-28 K00164 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2) 9.918 0.766 8.99E-36