Wetland Types in New Zealand Changes Over Time
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Monilophyte Mitochondrial Rps1 Genes Carry a Unique Group II Intron That Likely Originated from an Ancient Paralog in Rpl2
Downloaded from rnajournal.cshlp.org on September 26, 2021 - Published by Cold Spring Harbor Laboratory Press Monilophyte mitochondrial rps1 genes carry a unique group II intron that likely originated from an ancient paralog in rpl2 NILS KNIE, FELIX GREWE,1 and VOLKER KNOOP Abteilung Molekulare Evolution, IZMB–Institut für Zelluläre und Molekulare Botanik, Universität Bonn, D-53115 Bonn, Germany ABSTRACT Intron patterns in plant mitochondrial genomes differ significantly between the major land plant clades. We here report on a new, clade-specific group II intron in the rps1 gene of monilophytes (ferns). This intron, rps1i25g2, is strikingly similar to rpl2i846g2 previously identified in the mitochondrial rpl2 gene of seed plants, ferns, and the lycophyte Phlegmariurus squarrosus. Although mitochondrial ribosomal protein genes are frequently subject to endosymbiotic gene transfer among plants, we could retrieve the mitochondrial rps1 gene in a taxonomically wide sampling of 44 monilophyte taxa including basal lineages such as the Ophioglossales, Psilotales, and Marattiales with the only exception being the Equisetales (horsetails). Introns rps1i25g2 and rpl2i846g2 were likewise consistently present with only two exceptions: Intron rps1i25g2 is lost in the genus Ophioglossum and intron rpl2i846g2 is lost in Equisetum bogotense. Both intron sequences are moderately affected by RNA editing. The unprecedented primary and secondary structure similarity of rps1i25g2 and rpl2i846g2 suggests an ancient retrotransposition event copying rpl2i846g2 into rps1, for which we suggest a model. Our phylogenetic analysis adding the new rps1 locus to a previous data set is fully congruent with recent insights on monilophyte phylogeny and further supports a sister relationship of Gleicheniales and Hymenophyllales. Keywords: group II intron; RNA editing; intron transfer; reverse splicing; intron loss; monilophyte phylogeny INTRODUCTION and accordingly the genome sizes of most free-living bacteria, are an example for the latter (Ward et al. -
SEPTEMBER 1987 “REGISTERED by AUSTRALIA POST —‘ PUBLICATION NUMBER Man 3809." J
ISSN 0811—5311 DATE—‘ SEPTEMBER 1987 “REGISTERED BY AUSTRALIA POST —‘ PUBLICATION NUMBER man 3809." j LEADER: Peter Hind, 41 Miller Street, Mt. Druitt 2770 SECRETARY: Moreen Woollett, 3 Curra» ang Place, Como West 2226 HON. TREASURER: Margaret Olde, 138 Fan ler Road, Illaflong 2234 SPORE BANK: Jenny Thompson, 2a Albion flace, Engadine 2233 Dear Melbers, First the good nsvs. ‘Ihanks to the many matbers she provided articles, ocrrments and slides, the book which we are pmcing through the PLbliskfing Section of S.G.A.P. (NEW) Limited is nearing ompletion. Publications Manager, Bill Payne has proof copies and is currenfly maldng final corrections. This will be the initial volume inwhat is expected to be a oanplete reference to Australian fems and is titled "'lhe Australian Fern Series 1". It is only a small volunewhich hopefillly can be retailed at an affordab 1e price to the majority of fern growers. , Our pr lication differs from many "gardening" books because it is not full of irrelevant padding. 'Jhe emphasis has been on producing a practical guide to the cultivation of particuler Australian native ferns. 'Ihexe is one article of a tednfical nature based on recent research, but although scientific this too has been written in simple terms thatwouldbe appreciated by most fern growers. A feature of thebook is the large nunber of striking full colour illustrations. In our next Newsletter we hope to say more abqut details of plb lication * * * * * * * DOODIA sp. NO. 1 - CANE On the last page of this Newsletter there is alphoto copy of another unsual and apparently attractive fern contributed by Queensland member Rod Pattison. -
Harvest of Various Native Plant Species from Tasmania
Wildlife Trade Operation - Harvest of various native plant species from Tasmania ------------------------------------------------------------------------------------------------------- 1. Introduction This application is for the harvest of cut foliage for export of flora from state forest areas and private land in Tasmania and Flinders Island. The harvest operation is being monitored by Forestry Tasmania, and management of native species in Tasmania is carried out by the department of Primary Industries and Water. Legislative power to declare protected plants species is found under the Nature Conservation Act 2002. Other relevant legislation includes the Threatened Species Protection Act 1995, and the Forest Practices Act 1985. Scientific name Common name Harvest portion Banksia marginata Honeysuckle Banksia Flowering stems (Proteaceae) Blechnum nudum Fish-bone fern Unblemished foliage (Blechnanaceae) Gahnia grandis Cutting grass Flowering stems (after (Cyperaceae) seed drop) Gleichenia dicarpa, G. Coral fern Unblemished foliage microphylla (Gleicheniaceae) Lomatia tinctoria Guitar plant Unblemished foliage (Proteaceae) Nothofagus cunninghamii Myrtle Beach Unblemished foliage (Fagaceae) Polystichum proliferum Mother shield fern Unblemished foliage (Aspidiaceae) Xanthorrhoea australis Grass tree Unblemished foliage (Xanthorroeaceae) Dicksonia antarctica Soft Tree-fern Unblemished foliage (Dicksoniaceae) Tasmannia lanceolata Pepper bush Unblemished foliage; (Winteraceae) Ripe fruit Location of Harvest All products are to be harvested from “Unrestricted Multiple Use” state forest areas in Tasmania (as defined by Forestry Tasmania), and privately owned land in Tasmania and Flinders Island, under property owner’s consent as and when required. The present location of harvesting is defined as per contract of Sale Agreement with Forestry Tasmania No. .1120 Prids 18707, 18767,18769,187770. Flinders Island has not been necessary, however if demand increases, Flinders Island may be required to be harvested. -
Corrections to Phytotaxa 19: Linear Sequence of Lycophytes and Ferns
Phytotaxa 28: 50–52 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Correction PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) Corrections to Phytotaxa 19: Linear sequence of lycophytes and ferns MAARTEN J.M. CHRISTENHUSZ1 & HARALD SCHNEIDER2 1Botany Unit, Finnish Museum of Natural History, Postbox 4, 00014 University of Helsinki, Finland. E-mail: [email protected] 2Department of Botany, The Natural History Museum, Cromwell Road, SW7 5BD London, U.K. E-mail: [email protected] After the publication of our A linear sequence of extant families and genera of lycophytes and ferns (Christenhusz, Zhang & Schneider 2011), a couple of errors were brought to our attention: Platyzoma placed in Pteris (Pteridaceae), and correcting erroneous combinations made in Pteris of Gleichenia species. In the New Combinations section on page 22, we attempted to provide new combinations for the genus Platyzoma R.Br., which is embedded in Pteris L. (Schuettpelz & Pryer 2007, Lehtonen 2011). When doing so, we made the unfortunate choice to follow the treatment of Platyzoma by Desvaux (1827), which included several additional species of Gleichenia, instead of the modern treatment of Platyzoma in which only the species Platyzoma microphyllum Brown (1810: 160) is included. Only that name needed to be transferred. This resulted in the creation of a number of unnecessary new names and combinations of Australasian Gleichenia, for which we apologise. We erroneously provided names in Pteris for Gleichenia dicarpa R.Br., G. alpina R.Br. and G. rupestris R.Br., which are all correctly placed in Gleichenia and not in Pteris. Therefore these new names are to be treated as synonyms. -
Gleichenia Dicarpa
Gleichenia dicarpa COMMON NAME Tangle fern, swamp umbrella fern SYNONYMS Gleichenia circinnata Sw.; Gleichenia dicarpa var. hecistophylla (A.Cunn.) G.Schneid.; Gleichenia semi-vestita var. hecistophylla (A.Cunn.) Hook.f.; Gleicheniastrum hecistophyllum var. majus (T.Moore) Nakai; Gleichenia circinnata var. hecistophylla (A.Cunn.) Hook.f.; Gleichenia dicarpa var. major T.Moore; Gleicheniastrum hecistophyllum (A.Cunn.) Nakai; Mertensia dicarpa (R.Br.) Poir.; Platyzoma dicarpum (R.Br.) Desv.; Calymella dicarpa (R.Br.) C.Presl; Calymella major Nakai; Gleichenia hecistophylla A.Cunn. FAMILY Gleicheniaceae AUTHORITY Gleichenia dicarpa R. Br. FLORA CATEGORY Kennedy Bay, September. Photographer: John Smith-Dodsworth Vascular – Native ENDEMIC TAXON Yes ENDEMIC GENUS No ENDEMIC FAMILY No STRUCTURAL CLASS Ferns At Kennedy Bay, September. Photographer: NVS CODE John Smith-Dodsworth GLEDIC CHROMOSOME NUMBER 2n = 40 CURRENT CONSERVATION STATUS 2012 | Not Threatened PREVIOUS CONSERVATION STATUSES 2009 | Not Threatened 2004 | Not Threatened DISTRIBUTION Indigenous. New Zealand. North, South, Stewart and Chathams Islands. Also Australia, New Caledonia, Philippines, Borneo and Malaysia HABITAT Coastal to subalpine in poorly drainning soils, clay pans and pakihi and peat bogs. In lowland peat bogs often forming dense, almost impenetrable masses hence the common name “tangle fern”. FEATURES Rhizome 1.5-3.0 mm diameter, at first bearing brown lanceolate ciliate scales. Fronds of 1-4 tiers of branches, 0.1-2.0 m or more long; lower tiers often branching, usually more than 150 mm wide. Stipes scattered along rhizomes, 0.6-0.95 m long, often bearing brown lanceolate ciliate scales; rachis bearing weak brown to white often matted stellate hairs and ciliate scales.Pinnules glabrous above or with scattered hairs along costa, with sparse or dense whitish to ferruginous scales along costa below; ultimate segments 0.8-1.5 mm long, 0.8-2.0 mm wide, more or less round, obtuse, flat or slightly convex above, pouched below; undersurface white, rarely green. -
President's Annual Report 2005–2006
E-NEWSLETTER: NO 36. MONTH 2006 Deadline for next issue: Friday 15 December 2006 President’s annual report 2005–2006 It gives me great pleasure to present to you this President’s report for the last 12 months or so. In doing, so I wish to acknowledge the hard work and dedication of all the members of the NZPCN Council. They carry most of the work and without their help, little could have been achieved. 1.Council meetings Since the last AGM (held in Christchurch in August 2005) there have been three Council Meetings: 16 February, 19 May, and 18 August. A fourth is to be held on 19 November before the Cheeseman Symposium. 2. Patrons I am very pleased to say that Peri Drysdale and Rob Fenwick have kindly accepted the invitation of the Network to become Patrons. This was announced in the Newsletter and there is information about our Patrons on the web site. 3. Membership Individual 184 Student/Unwaged 24 NGO 10 Corporate 17 (6 members each = 102) Total members 235 Total number of people on membership 333 list (including Corporate members) 4. Website use and development Website usage continues to grow with over 1100 people visiting every day making it the most visited plant information system in New Zealand. Recent developments and changes to the website over the past year include: • 54 Animal pest fact sheets • Threatened bryophyte search engine • 1700 plant checklists for areas in New Zealand • Threatened plant lists by Regional Council boundary • Important Plant Area nomination and viewing area • Links from plant fact sheets added to Landcare Research’s New Zealand Flora and Oratia Plant nursery • Threatened plant fact sheets completed for all Acutely (129) and Chronically threatened (103) plants. -
4 Chapter Four Recovery of the CO2 Sink in A
http://researchcommons.waikato.ac.nz/ Research Commons at the University of Waikato Copyright Statement: The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). The thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: Any use you make of these documents or images must be for research or private study purposes only, and you may not make them available to any other person. Authors control the copyright of their thesis. You will recognise the author’s right to be identified as the author of the thesis, and due acknowledgement will be made to the author where appropriate. You will obtain the author’s permission before publishing any material from the thesis. Carbon dynamics in restiad peatlands across different timescales A thesis submitted in fulfilment of the requirements for the degree of Doctor of Philosophy in Earth Sciences at The University of Waikato by Joshua Lee Ratcliffe 2019 I would like to dedicate this thesis to my friend and former mentor; Dr. Richard Payne who died in an avalanche on the 26th of May 2019 while attempting to climb an un-named peak upon Nanda Devi mountain. Abstract Peatlands contain one of the largest terrestrial carbon stores on the planet, and one which is known to interact with climate and global biogeochemical cycling of nutrients. Peatlands maintain their carbon primarily through a high and stable water table which restricts decomposition, and large amounts of carbon can be lost upon drying. However, peatlands are also characterised by non-linear responses to external forcing with a complex array of internal feedbacks which tend to dominate ecosystem response over long-timescales and may amplify or dampen external influences. -
Effects of a Fire Response Trait on Diversification in Replicated Radiations
ORIGINAL ARTICLE doi:10.1111/evo.12273 EFFECTS OF A FIRE RESPONSE TRAIT ON DIVERSIFICATION IN REPLICATED RADIATIONS Glenn Litsios,1,2 Rafael O. Wuest,¨ 3 Anna Kostikova,1,2 Felix´ Forest,4 Christian Lexer,5 H. Peter Linder,6 Peter B. Pearman,3 Niklaus E. Zimmermann,3 and Nicolas Salamin1,2,7 1Department of Ecology and Evolution, Biophore, University of Lausanne, CH-1015 Lausanne, Switzerland 2Swiss Institute of Bioinformatics, Quartier Sorge, CH-1015 Lausanne, Switzerland 3Landscape Dynamics, Swiss Federal Research Institute WSL, CH-8903 Birmensdorf, Switzerland 4Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, United Kingdom 5Unit of Ecology and Evolution, Department of Biology, University of Fribourg, Chemin du Musee´ 10, CH-1700 Fribourg, Switzerland 6Insitute for Systematic Botany, University of Zurich, 8008 Zurich, Switzerland 7E-mail: [email protected] Received May 14, 2013 Accepted September 9, 2013 Fire has been proposed as a factor explaining the exceptional plant species richness found in Mediterranean regions. A fire response trait that allows plants to cope with frequent fire by either reseeding or resprouting could differentially affect rates of species diversification. However, little is known about the generality of the effects of differing fire response on species evolution. We study this question in the Restionaceae, a family that radiated in Southern Africa and Australia. These radiations occurred independently and represent evolutionary replicates. We apply Bayesian approaches to estimate trait-specific diversification rates and patterns of climatic niche evolution. We also compare the climatic heterogeneity of South Africa and Australia. Reseeders diversify faster than resprouters in South Africa, but not in Australia. -
Two New Species of Palm-Leaf Skeletonizers (Lepidoptera: Pterolonchidae: <I>Homaledra</I> Busck)
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Center for Systematic Entomology, Gainesville, Insecta Mundi Florida 3-26-2021 Two new species of palm-leaf skeletonizers (Lepidoptera: Pterolonchidae: Homaledra Busck) James E. Hayden Florida Department of Agriculture and Consumer Services, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/insectamundi Part of the Ecology and Evolutionary Biology Commons, and the Entomology Commons Hayden, James E., "Two new species of palm-leaf skeletonizers (Lepidoptera: Pterolonchidae: Homaledra Busck)" (2021). Insecta Mundi. 1350. https://digitalcommons.unl.edu/insectamundi/1350 This Article is brought to you for free and open access by the Center for Systematic Entomology, Gainesville, Florida at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Insecta Mundi by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. A journal of world insect systematics INSECTA MUNDI 0859 Two new species of palm-leaf skeletonizers Page Count: 24 (Lepidoptera: Pterolonchidae: Homaledra Busck) James E. Hayden Hayden Florida Department of Agriculture and Consumer Services Division of Plant Industry 1911 SW 34th Street Gainesville, FL 32608 USA Date of issue: March 26, 2021 Center for Systematic Entomology, Inc., Gainesville, FL Hayden JE. 2021. Two new species of palm-leaf skeletonizers (Lepidoptera: Pterolonchidae: Homaledra Busck). Insecta Mundi 0859: 1–24. Published on March 26, 2021 by Center for Systematic Entomology, Inc. P.O. Box 141874 Gainesville, FL 32614-1874 USA http://centerforsystematicentomology.org/ Insecta Mundi is a journal primarily devoted to insect systematics, but articles can be published on any non- marine arthropod. Topics considered for publication include systematics, taxonomy, nomenclature, checklists, faunal works, and natural history. -
Assessment of the Ecohydrological Functioning of Otakairangi Wetland, Northland
Assessment of the Ecohydrological Functioning of Otakairangi Wetland, Northland David I. Campbell Environmental Research Institute Faculty of Science and Engineering The University of Waikato ERI report number 92 Prepared for the Department of Conservation May 2017 Cite report as: Campbell, D.I., 2017. Assessment of the Ecohydrological Functioning of the Otakairangi Wetland, Northland. Environmental Research Institute Report No. 92. Client report prepared for the Department of Conservation. Environmental Research Institute, Faculty of Science and Engineering, The University of Waikato, Hamilton. 40 pp. Reviewed by: Approved for release: Date: Date: Louis Schipper John Tyrrell Professor, Soil Biogeochemistry Business Manager Environmental Research Institute Environmental Research Institute University of Waikato University of Waikato Executive Summary Otakairangi is the largest wetland remnant remaining on the floodplain of Northland’s Wairua River. Extensive peat deposits many metres deep accumulated over thousands of years on the valley floors of the Otakairangi and Riponui valleys, as they did elsewhere on the former Hikurangi “Swamp”. The remnant Otakairangi Wetland, with an area of 2.6 km2, represents around 20% of its former extent. This report provides an assessment of the ecohydrological functioning of Otakairangi Wetland in its present‐day state, based on information gathered during a field survey, interviews with land owners, and other sources. The wetland, which contains representative communities of rare peatland plants, is a good candidate for restoration, including re‐introduction of the now locally extinct climax peatland plant species Sporadanthus ferrugineus. Hydrological modification to Otakairangi over the past century has included a deep central drain that has largely eliminated the natural diffuse flows of the former Otakairangi Stream as it traversed the wetland, and lowered water tables. -
Invertebrate Communities in a Modified Isolated Raised Bog Compared to an Intact Raised Bog in New Zealand
Invertebrate communities in a modified isolated raised bog compared to an intact raised bog in New Zealand C.H. Watts1, B.R. Clarkson1, V.M. Cave2, D. Thornburrow1, S. Thorpe3 1 Manaaki Whenua - Landcare Research, Private Bag 3127, Hamilton, New Zealand 2 AgResearch Ltd., Private Bag 3115, Hamilton, New Zealand 3 Independent researcher, Auckland, New Zealand _______________________________________________________________________________________ SUMMARY The effect of modifying New Zealand’s threatened peat bogs on invertebrate communities is poorly known, despite their susceptibility to disturbance and their ecological significance. Using Malaise traps, we surveyed and compared terrestrial invertebrates in a remnant modified bog (Moanatuatua) isolated in an agricultural landscape and a community in an intact large bog (Kopuatai) in New Zealand. On average, more invertebrates were caught in the modified bog than in the intact bog. In addition, observed mean abundances for Diptera were higher at the modified bog. In contrast, total and geometric mean abundance of Coleoptera was significantly lower in the modified bog compared to the intact bog. We found no evidence of differences in species richness of Coleoptera, Lepidoptera, Diptera, Hymenoptera between the two bogs. Introduced species were more common in the modified bog. Ordination results indicated a difference in invertebrate community composition between the two bogs, and in addition the modified bog plots separated according to their distance from the wetland edge. Our results indicate that, within a modified isolated bog, native invertebrates can survive, and that some specialised and threatened species can thrive. However, the lower proportion of native Diptera and Lepidoptera taxa abundance in the modified bog is reason for concern. -
Et, but There Are Very Few Published Studies Where Atmospheric Fluxes of CO2 and CH4 and Waterborne Fluxes of DOC Are Measured at the Same Time
http://researchcommons.waikato.ac.nz/ Research Commons at the University of Waikato Copyright Statement: The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). The thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: Any use you make of these documents or images must be for research or private study purposes only, and you may not make them available to any other person. Authors control the copyright of their thesis. You will recognise the author’s right to be identified as the author of the thesis, and due acknowledgement will be made to the author where appropriate. You will obtain the author’s permission before publishing any material from the thesis. ASSESSING DISSOLVED ORGANIC CARBON EXPORT FROM KOPUATAI BOG, NEW ZEALAND A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Earth and Ocean Sciences at The University of Waikato by CATHERINE JEAN STURGEON _________ The University of Waikato 2013 Abstract Peatlands sequester carbon (C) through CO2 uptake and, ultimately, storage as peat. Carbon is lost from peatlands though gaseous pathways (as CO2 and CH4) and water pathways as dissolved organic C (DOC), dissolved inorganic C (DIC), particulate organic C (POC) or dissolved CO2 and CH4. Many studies have shown that the loss of C through DOC export is an important component of the annual C budget, but there are very few published studies where atmospheric fluxes of CO2 and CH4 and waterborne fluxes of DOC are measured at the same time.