A Rank-Exploiting Infinite Arnoldi Algorithm for Nonlinear Eigenvalue Problems
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A Distributed and Parallel Asynchronous Unite and Conquer Method to Solve Large Scale Non-Hermitian Linear Systems Xinzhe Wu, Serge Petiton
A Distributed and Parallel Asynchronous Unite and Conquer Method to Solve Large Scale Non-Hermitian Linear Systems Xinzhe Wu, Serge Petiton To cite this version: Xinzhe Wu, Serge Petiton. A Distributed and Parallel Asynchronous Unite and Conquer Method to Solve Large Scale Non-Hermitian Linear Systems. HPC Asia 2018 - International Conference on High Performance Computing in Asia-Pacific Region, Jan 2018, Tokyo, Japan. 10.1145/3149457.3154481. hal-01677110 HAL Id: hal-01677110 https://hal.archives-ouvertes.fr/hal-01677110 Submitted on 8 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. A Distributed and Parallel Asynchronous Unite and Conquer Method to Solve Large Scale Non-Hermitian Linear Systems Xinzhe WU Serge G. Petiton Maison de la Simulation, USR 3441 Maison de la Simulation, USR 3441 CRIStAL, UMR CNRS 9189 CRIStAL, UMR CNRS 9189 Université de Lille 1, Sciences et Technologies Université de Lille 1, Sciences et Technologies F-91191, Gif-sur-Yvette, France F-91191, Gif-sur-Yvette, France [email protected] [email protected] ABSTRACT the iteration number. These methods are already well implemented Parallel Krylov Subspace Methods are commonly used for solv- in parallel to profit from the great number of computation cores ing large-scale sparse linear systems. -
Implicitly Restarted Arnoldi/Lanczos Methods for Large Scale Eigenvalue Calculations
NASA Contractor Report 198342 /" ICASE Report No. 96-40 J ICA IMPLICITLY RESTARTED ARNOLDI/LANCZOS METHODS FOR LARGE SCALE EIGENVALUE CALCULATIONS Danny C. Sorensen NASA Contract No. NASI-19480 May 1996 Institute for Computer Applications in Science and Engineering NASA Langley Research Center Hampton, VA 23681-0001 Operated by Universities Space Research Association National Aeronautics and Space Administration Langley Research Center Hampton, Virginia 23681-0001 IMPLICITLY RESTARTED ARNOLDI/LANCZOS METHODS FOR LARGE SCALE EIGENVALUE CALCULATIONS Danny C. Sorensen 1 Department of Computational and Applied Mathematics Rice University Houston, TX 77251 sorensen@rice, edu ABSTRACT Eigenvalues and eigenfunctions of linear operators are important to many areas of ap- plied mathematics. The ability to approximate these quantities numerically is becoming increasingly important in a wide variety of applications. This increasing demand has fu- eled interest in the development of new methods and software for the numerical solution of large-scale algebraic eigenvalue problems. In turn, the existence of these new methods and software, along with the dramatically increased computational capabilities now avail- able, has enabled the solution of problems that would not even have been posed five or ten years ago. Until very recently, software for large-scale nonsymmetric problems was virtually non-existent. Fortunately, the situation is improving rapidly. The purpose of this article is to provide an overview of the numerical solution of large- scale algebraic eigenvalue problems. The focus will be on a class of methods called Krylov subspace projection methods. The well-known Lanczos method is the premier member of this class. The Arnoldi method generalizes the Lanczos method to the nonsymmetric case. -
Krylov Subspaces
Lab 1 Krylov Subspaces Lab Objective: Discuss simple Krylov Subspace Methods for finding eigenvalues and show some interesting applications. One of the biggest difficulties in computational linear algebra is the amount of memory needed to store a large matrix and the amount of time needed to read its entries. Methods using Krylov subspaces avoid this difficulty by studying how a matrix acts on vectors, making it unnecessary in many cases to create the matrix itself. More specifically, we can construct a Krylov subspace just by knowing how a linear transformation acts on vectors, and with these subspaces we can closely approximate eigenvalues of the transformation and solutions to associated linear systems. The Arnoldi iteration is an algorithm for finding an orthonormal basis of a Krylov subspace. Its outputs can also be used to approximate the eigenvalues of the original matrix. The Arnoldi Iteration The order-N Krylov subspace of A generated by x is 2 n−1 Kn(A; x) = spanfx;Ax;A x;:::;A xg: If the vectors fx;Ax;A2x;:::;An−1xg are linearly independent, then they form a basis for Kn(A; x). However, this basis is usually far from orthogonal, and hence computations using this basis will likely be ill-conditioned. One way to find an orthonormal basis for Kn(A; x) would be to use the modi- fied Gram-Schmidt algorithm from Lab TODO on the set fx;Ax;A2x;:::;An−1xg. More efficiently, the Arnold iteration integrates the creation of fx;Ax;A2x;:::;An−1xg with the modified Gram-Schmidt algorithm, returning an orthonormal basis for Kn(A; x). -
Iterative Methods for Linear System
Iterative methods for Linear System JASS 2009 Student: Rishi Patil Advisor: Prof. Thomas Huckle Outline ●Basics: Matrices and their properties Eigenvalues, Condition Number ●Iterative Methods Direct and Indirect Methods ●Krylov Subspace Methods Ritz Galerkin: CG Minimum Residual Approach : GMRES/MINRES Petrov-Gaelerkin Method: BiCG, QMR, CGS 1st April JASS 2009 2 Basics ●Linear system of equations Ax = b ●A Hermitian matrix (or self-adjoint matrix ) is a square matrix with complex entries which is equal to its own conjugate transpose, 3 2 + i that is, the element in the ith row and jth column is equal to the A = complex conjugate of the element in the jth row and ith column, for 2 − i 1 all indices i and j • Symmetric if a ij = a ji • Positive definite if, for every nonzero vector x XTAx > 0 • Quadratic form: 1 f( x) === xTAx −−− bTx +++ c 2 ∂ f( x) • Gradient of Quadratic form: ∂x 1 1 1 f' (x) = ⋮ = ATx + Ax − b ∂ 2 2 f( x) ∂xn 1st April JASS 2009 3 Various quadratic forms Positive-definite Negative-definite matrix matrix Singular Indefinite positive-indefinite matrix matrix 1st April JASS 2009 4 Various quadratic forms 1st April JASS 2009 5 Eigenvalues and Eigenvectors For any n×n matrix A, a scalar λ and a nonzero vector v that satisfy the equation Av =λv are said to be the eigenvalue and the eigenvector of A. ●If the matrix is symmetric , then the following properties hold: (a) the eigenvalues of A are real (b) eigenvectors associated with distinct eigenvalues are orthogonal ●The matrix A is positive definite (or positive semidefinite) if and only if all eigenvalues of A are positive (or nonnegative). -
Implicitly Restarted Arnoldi/Lanczos Methods for Large Scale Eigenvalue Calculations
https://ntrs.nasa.gov/search.jsp?R=19960048075 2020-06-16T03:31:45+00:00Z NASA Contractor Report 198342 /" ICASE Report No. 96-40 J ICA IMPLICITLY RESTARTED ARNOLDI/LANCZOS METHODS FOR LARGE SCALE EIGENVALUE CALCULATIONS Danny C. Sorensen NASA Contract No. NASI-19480 May 1996 Institute for Computer Applications in Science and Engineering NASA Langley Research Center Hampton, VA 23681-0001 Operated by Universities Space Research Association National Aeronautics and Space Administration Langley Research Center Hampton, Virginia 23681-0001 IMPLICITLY RESTARTED ARNOLDI/LANCZOS METHODS FOR LARGE SCALE EIGENVALUE CALCULATIONS Danny C. Sorensen 1 Department of Computational and Applied Mathematics Rice University Houston, TX 77251 sorensen@rice, edu ABSTRACT Eigenvalues and eigenfunctions of linear operators are important to many areas of ap- plied mathematics. The ability to approximate these quantities numerically is becoming increasingly important in a wide variety of applications. This increasing demand has fu- eled interest in the development of new methods and software for the numerical solution of large-scale algebraic eigenvalue problems. In turn, the existence of these new methods and software, along with the dramatically increased computational capabilities now avail- able, has enabled the solution of problems that would not even have been posed five or ten years ago. Until very recently, software for large-scale nonsymmetric problems was virtually non-existent. Fortunately, the situation is improving rapidly. The purpose of this article is to provide an overview of the numerical solution of large- scale algebraic eigenvalue problems. The focus will be on a class of methods called Krylov subspace projection methods. The well-known Lanczos method is the premier member of this class. -
Deflation by Restriction for the Inverse-Free Preconditioned Krylov Subspace Method
NUMERICAL ALGEBRA, doi:10.3934/naco.2016.6.55 CONTROL AND OPTIMIZATION Volume 6, Number 1, March 2016 pp. 55{71 DEFLATION BY RESTRICTION FOR THE INVERSE-FREE PRECONDITIONED KRYLOV SUBSPACE METHOD Qiao Liang Department of Mathematics University of Kentucky Lexington, KY 40506-0027, USA Qiang Ye∗ Department of Mathematics University of Kentucky Lexington, KY 40506-0027, USA (Communicated by Xiaoqing Jin) Abstract. A deflation by restriction scheme is developed for the inverse-free preconditioned Krylov subspace method for computing a few extreme eigen- values of the definite symmetric generalized eigenvalue problem Ax = λBx. The convergence theory for the inverse-free preconditioned Krylov subspace method is generalized to include this deflation scheme and numerical examples are presented to demonstrate the convergence properties of the algorithm with the deflation scheme. 1. Introduction. The definite symmetric generalized eigenvalue problem for (A; B) is to find λ 2 R and x 2 Rn with x 6= 0 such that Ax = λBx (1) where A; B are n × n symmetric matrices and B is positive definite. The eigen- value problem (1), also referred to as a pencil eigenvalue problem (A; B), arises in many scientific and engineering applications, such as structural dynamics, quantum mechanics, and machine learning. The matrices involved in these applications are usually large and sparse and only a few of the eigenvalues are desired. Iterative methods such as the Lanczos algorithm and the Arnoldi algorithm are some of the most efficient numerical methods developed in the past few decades for computing a few eigenvalues of a large scale eigenvalue problem, see [1, 11, 19]. -
The Influence of Orthogonality on the Arnoldi Method
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Linear Algebra and its Applications 309 (2000) 307±323 www.elsevier.com/locate/laa The in¯uence of orthogonality on the Arnoldi method T. Braconnier *, P. Langlois, J.C. Rioual IREMIA, Universite de la Reunion, DeÂpartement de Mathematiques et Informatique, BP 7151, 15 Avenue Rene Cassin, 97715 Saint-Denis Messag Cedex 9, La Reunion, France Received 1 February 1999; accepted 22 May 1999 Submitted by J.L. Barlow Abstract Many algorithms for solving eigenproblems need to compute an orthonormal basis. The computation is commonly performed using a QR factorization computed using the classical or the modi®ed Gram±Schmidt algorithm, the Householder algorithm, the Givens algorithm or the Gram±Schmidt algorithm with iterative reorthogonalization. For the eigenproblem, although textbooks warn users about the possible instability of eigensolvers due to loss of orthonormality, few theoretical results exist. In this paper we prove that the loss of orthonormality of the computed basis can aect the reliability of the computed eigenpair when we use the Arnoldi method. We also show that the stopping criterion based on the backward error and the value computed using the Arnoldi method can dier because of the loss of orthonormality of the computed basis of the Krylov subspace. We also give a bound which quanti®es this dierence in terms of the loss of orthonormality. Ó 2000 Elsevier Science Inc. All rights reserved. Keywords: QR factorization; Backward error; Eigenvalues; Arnoldi method 1. Introduction The aim of the most commonly used eigensolvers is to approximate a basis of an invariant subspace associated with some eigenvalues. -
Power Method and Krylov Subspaces
Power method and Krylov subspaces Introduction When calculating an eigenvalue of a matrix A using the power method, one starts with an initial random vector b and then computes iteratively the sequence Ab, A2b,...,An−1b normalising and storing the result in b on each iteration. The sequence converges to the eigenvector of the largest eigenvalue of A. The set of vectors 2 n−1 Kn = b, Ab, A b,...,A b , (1) where n < rank(A), is called the order-n Krylov matrix, and the subspace spanned by these vectors is called the order-n Krylov subspace. The vectors are not orthogonal but can be made so e.g. by Gram-Schmidt orthogonalisation. For the same reason that An−1b approximates the dominant eigenvector one can expect that the other orthogonalised vectors approximate the eigenvectors of the n largest eigenvalues. Krylov subspaces are the basis of several successful iterative methods in numerical linear algebra, in particular: Arnoldi and Lanczos methods for finding one (or a few) eigenvalues of a matrix; and GMRES (Generalised Minimum RESidual) method for solving systems of linear equations. These methods are particularly suitable for large sparse matrices as they avoid matrix-matrix opera- tions but rather multiply vectors by matrices and work with the resulting vectors and matrices in Krylov subspaces of modest sizes. Arnoldi iteration Arnoldi iteration is an algorithm where the order-n orthogonalised Krylov matrix Qn of a matrix A is built using stabilised Gram-Schmidt process: • start with a set Q = {q1} of one random normalised vector q1 • repeat for k =2 to n : – make a new vector qk = Aqk−1 † – orthogonalise qk to all vectors qi ∈ Q storing qi qk → hi,k−1 – normalise qk storing qk → hk,k−1 – add qk to the set Q By construction the matrix Hn made of the elements hjk is an upper Hessenberg matrix, h1,1 h1,2 h1,3 ··· h1,n h2,1 h2,2 h2,3 ··· h2,n 0 h3,2 h3,3 ··· h3,n Hn = , (2) . -
Finding Eigenvalues: Arnoldi Iteration and the QR Algorithm
Finding Eigenvalues: Arnoldi Iteration and the QR Algorithm Will Wheeler Algorithms Interest Group Jul 13, 2016 Outline Finding the largest eigenvalue I Largest eigenvalue power method I So much work for one eigenvector. What about others? I More eigenvectors orthogonalize Krylov matrix I build orthogonal list Arnoldi iteration Solving the eigenvalue problem I Eigenvalues diagonal of triangular matrix I Triangular matrix QR algorithm I QR algorithm QR decomposition I Better QR decomposition Hessenberg matrix I Hessenberg matrix Arnoldi algorithm Power Method How do we find the largest eigenvalue of an m × m matrix A? I Start with a vector b and make a power sequence: b; Ab; A2b;::: I Higher eigenvalues dominate: n n n n A (v1 + v2) = λ1v1 + λ2v2 ≈ λ1v1 Vector sequence (normalized) converged? I Yes: Eigenvector I No: Iterate some more Krylov Matrix Power method throws away information along the way. I Put the sequence into a matrix K = [b; Ab; A2b;:::; An−1b] (1) = [xn; xn−1; xn−2;:::; x1] (2) I Gram-Schmidt approximates first n eigenvectors v1 = x1 (3) x2 · x1 v2 = x2 − x1 (4) x1 · x1 x3 · x1 x3 · x2 v3 = x3 − x1 − x2 (5) x1 · x1 x2 · x2 ::: (6) I Why not orthogonalize as we build the list? Arnoldi Iteration I Start with a normalized vector q1 xk = Aqk−1 (next power) (7) k−1 X yk = xk − (qj · xk ) qj (Gram-Schmidt) (8) j=1 qk = yk = jyk j (normalize) (9) I Orthonormal vectors fq1;:::; qng span Krylov subspace n−1 (Kn = spanfq1; Aq1;:::; A q1g) I These are not the eigenvectors of A, but make a similarity y (unitary) transformation Hn = QnAQn Arnoldi Iteration I Start with a normalized vector q1 xk = Aqk−1 (next power) (10) k−1 X yk = xk − (qj · xk ) qj (Gram-Schmidt) (11) j=1 qk = yk =jyk j (normalize) (12) I Orthonormal vectors fq1;:::; qng span Krylov subspace n−1 (Kn = spanfq1; Aq1;:::; A q1g) I These are not the eigenvectors of A, but make a similarity y (unitary) transformation Hn = QnAQn Arnoldi Iteration - Construct Hn We can construct the matrix Hn along the way. -
A Generalized Eigenvalue Algorithm for Tridiagonal Matrix Pencils Based on a Nonautonomous Discrete Integrable System
A generalized eigenvalue algorithm for tridiagonal matrix pencils based on a nonautonomous discrete integrable system Kazuki Maedaa, , Satoshi Tsujimotoa ∗ aDepartment of Applied Mathematics and Physics, Graduate School of Informatics, Kyoto University, Kyoto 606-8501, Japan Abstract A generalized eigenvalue algorithm for tridiagonal matrix pencils is presented. The algorithm appears as the time evolution equation of a nonautonomous discrete integrable system associated with a polynomial sequence which has some orthogonality on the support set of the zeros of the characteristic polynomial for a tridiagonal matrix pencil. The convergence of the algorithm is discussed by using the solution to the initial value problem for the corresponding discrete integrable system. Keywords: generalized eigenvalue problem, nonautonomous discrete integrable system, RII chain, dqds algorithm, orthogonal polynomials 2010 MSC: 37K10, 37K40, 42C05, 65F15 1. Introduction Applications of discrete integrable systems to numerical algorithms are important and fascinating top- ics. Since the end of the twentieth century, a number of relationships between classical numerical algorithms and integrable systems have been studied (see the review papers [1–3]). On this basis, new algorithms based on discrete integrable systems have been developed: (i) singular value algorithms for bidiagonal matrices based on the discrete Lotka–Volterra equation [4, 5], (ii) Pade´ approximation algorithms based on the dis- crete relativistic Toda lattice [6] and the discrete Schur flow [7], (iii) eigenvalue algorithms for band matrices based on the discrete hungry Lotka–Volterra equation [8] and the nonautonomous discrete hungry Toda lattice [9], and (iv) algorithms for computing D-optimal designs based on the nonautonomous discrete Toda (nd-Toda) lattice [10] and the discrete modified KdV equation [11]. -
Analysis of a Fast Hankel Eigenvalue Algorithm
Analysis of a Fast Hankel Eigenvalue Algorithm a b Franklin T Luk and Sanzheng Qiao a Department of Computer Science Rensselaer Polytechnic Institute Troy New York USA b Department of Computing and Software McMaster University Hamilton Ontario LS L Canada ABSTRACT This pap er analyzes the imp ortant steps of an O n log n algorithm for nding the eigenvalues of a complex Hankel matrix The three key steps are a Lanczostype tridiagonalization algorithm a fast FFTbased Hankel matrixvector pro duct pro cedure and a QR eigenvalue metho d based on complexorthogonal transformations In this pap er we present an error analysis of the three steps as well as results from numerical exp eriments Keywords Hankel matrix eigenvalue decomp osition Lanczos tridiagonalization Hankel matrixvector multipli cation complexorthogonal transformations error analysis INTRODUCTION The eigenvalue decomp osition of a structured matrix has imp ortant applications in signal pro cessing In this pap er nn we consider a complex Hankel matrix H C h h h h n n h h h h B C n n B C B C H B C A h h h h n n n n h h h h n n n n The authors prop osed a fast algorithm for nding the eigenvalues of H The key step is a fast Lanczos tridiago nalization algorithm which employs a fast Hankel matrixvector multiplication based on the Fast Fourier transform FFT Then the algorithm p erforms a QRlike pro cedure using the complexorthogonal transformations in the di agonalization to nd the eigenvalues In this pap er we present an error analysis and discuss -
Introduction to Mathematical Programming
Introduction to Mathematical Programming Ming Zhong Lecture 24 October 29, 2018 Ming Zhong (JHU) AMS Fall 2018 1 / 18 Singular Value Decomposition (SVD) Table of Contents 1 Singular Value Decomposition (SVD) Ming Zhong (JHU) AMS Fall 2018 2 / 18 Singular Value Decomposition (SVD) Matrix Decomposition n×n We have discussed several decomposition techniques (for A 2 R ), A = LU when A is non-singular (Gaussian elimination). A = LL> when A is symmetric positive definite (Cholesky). A = QR for any real square matrix (unique when A is non-singular). A = PDP−1 if A has n linearly independent eigen-vectors). A = PJP−1 for any real square matrix. We are now ready to discuss the Singular Value Decomposition (SVD), A = UΣV∗; m×n m×m n×n m×n for any A 2 C , U 2 C , V 2 C , and Σ 2 R . Ming Zhong (JHU) AMS Fall 2018 3 / 18 Singular Value Decomposition (SVD) Some Brief History Going back in time, It was originally developed by differential geometers, equivalence of bi-linear forms by independent orthogonal transformation. Eugenio Beltrami in 1873, independently Camille Jordan in 1874, for bi-linear forms. James Joseph Sylvester in 1889 did SVD for real square matrices, independently; singular values = canonical multipliers of the matrix. Autonne in 1915 did SVD via polar decomposition. Carl Eckart and Gale Young in 1936 did the proof of SVD of rectangular and complex matrices, as a generalization of the principal axis transformaton of the Hermitian matrices. Erhard Schmidt in 1907 defined SVD for integral operators. Emile´ Picard in 1910 is the first to call the numbers singular values.