Saccoglossus Kowalevskii
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Hemichordate Phylogeny: a Molecular, and Genomic Approach By
Hemichordate Phylogeny: A molecular, and genomic approach by Johanna Taylor Cannon A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 4, 2014 Keywords: phylogeny, evolution, Hemichordata, bioinformatics, invertebrates Copyright 2014 by Johanna Taylor Cannon Approved by Kenneth M. Halanych, Chair, Professor of Biological Sciences Jason Bond, Associate Professor of Biological Sciences Leslie Goertzen, Associate Professor of Biological Sciences Scott Santos, Associate Professor of Biological Sciences Abstract The phylogenetic relationships within Hemichordata are significant for understanding the evolution of the deuterostomes. Hemichordates possess several important morphological structures in common with chordates, and they have been fixtures in hypotheses on chordate origins for over 100 years. However, current evidence points to a sister relationship between echinoderms and hemichordates, indicating that these chordate-like features were likely present in the last common ancestor of these groups. Therefore, Hemichordata should be highly informative for studying deuterostome character evolution. Despite their importance for understanding the evolution of chordate-like morphological and developmental features, relationships within hemichordates have been poorly studied. At present, Hemichordata is divided into two classes, the solitary, free-living enteropneust worms, and the colonial, tube- dwelling Pterobranchia. The objective of this dissertation is to elucidate the evolutionary relationships of Hemichordata using multiple datasets. Chapter 1 provides an introduction to Hemichordata and outlines the objectives for the dissertation research. Chapter 2 presents a molecular phylogeny of hemichordates based on nuclear ribosomal 18S rDNA and two mitochondrial genes. In this chapter, we suggest that deep-sea family Saxipendiidae is nested within Harrimaniidae, and Torquaratoridae is affiliated with Ptychoderidae. -
An Anatomical Description of a Miniaturized Acorn Worm (Hemichordata, Enteropneusta) with Asexual Reproduction by Paratomy
An Anatomical Description of a Miniaturized Acorn Worm (Hemichordata, Enteropneusta) with Asexual Reproduction by Paratomy The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Worsaae, Katrine, Wolfgang Sterrer, Sabrina Kaul-Strehlow, Anders Hay-Schmidt, and Gonzalo Giribet. 2012. An anatomical description of a miniaturized acorn worm (hemichordata, enteropneusta) with asexual reproduction by paratomy. PLoS ONE 7(11): e48529. Published Version doi:10.1371/journal.pone.0048529 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:11732117 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA An Anatomical Description of a Miniaturized Acorn Worm (Hemichordata, Enteropneusta) with Asexual Reproduction by Paratomy Katrine Worsaae1*, Wolfgang Sterrer2, Sabrina Kaul-Strehlow3, Anders Hay-Schmidt4, Gonzalo Giribet5 1 Marine Biological Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark, 2 Bermuda Natural History Museum, Flatts, Bermuda, 3 Department for Molecular Evolution and Development, University of Vienna, Vienna, Austria, 4 Department of Neuroscience and Pharmacology, The Panum Institute, University of Copenhagen, Copenhagen, Denmark, 5 Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachussetts, United States of America Abstract The interstitial environment of marine sandy bottoms is a nutrient-rich, sheltered habitat whilst at the same time also often a turbulent, space-limited, and ecologically challenging environment dominated by meiofauna. The interstitial fauna is one of the most diverse on earth and accommodates miniaturized representatives from many macrofaunal groups as well as several exclusively meiofaunal phyla. -
TREATISE ONLINE Number 109
TREATISE ONLINE Number 109 Part V, Second Revision, Chapter 2: Class Enteropneusta: Introduction, Morphology, Life Habits, Systematic Descriptions, and Future Research Christopher B. Cameron 2018 Lawrence, Kansas, USA ISSN 2153-4012 paleo.ku.edu/treatiseonline Enteropneusta 1 PART V, SECOND REVISION, CHAPTER 2: CLASS ENTEROPNEUSTA: INTRODUCTION, MORPHOLOGY, LIFE HABITS, SYSTEMATIC DESCRIPTIONS, AND FUTURE RESEARCH CHRISTOPHER B. CAMERON [Département de sciences biologiques, Université de Montréal, Montréal QC, H2V 2S9, Canada, [email protected]] Class ENTEROPNEUSTA MORPHOLOGY Gegenbaur, 1870 The acorn worm body is arranged [nom. correct. HAECKEL, 1879, p. 469 pro Enteropneusti GEGENBAUR, into an anterior proboscis, a collar, and a 1870, p. 158] posterior trunk (Fig. 1). Body length can Free living, solitary, worms ranging from vary from less than a millimeter (WORSAAE lengths of less than a millimeter to 1.5 & others, 2012) to 1.5 meters (SPENGEL, meters; entirely marine; body tripartite, 1893). The proboscis is muscular and its with proboscis, collar, and trunk; proboscis epidermis replete with sensory, ciliated, coelom contains heart-kidney-stomochord and glandular cells (BENITO & PARDOS, complex; preoral ciliary organ posterior- 1997). Acorn worms deposit-feed by trap- ventral; collagenous Y-shaped nuchal skel- ping sediment in mucus and transporting eton extends from proboscis through neck it to the mouth with cilia. A pre-oral ciliary before bifurcating into paired horns in organ on the posterior proboscis (BRAMBEL & collar; paired dorsal perihaemal coeloms COLE, 1939) (Fig. 2.1) directs the food-laden associated with collar dorsal blood vessel; mucous thread into the mouth (GONZALEZ anterior trunk pharynx perforated with & CAMERON, 2009). The proboscis coelom paired gill slits that connect via atria to contains a turgid stomochord (Fig. -
Phylogenomic Resolution of the Hemichordate and Echinoderm Clade
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 24, 2827–2832, December 1, 2014 ª2014 Elsevier Ltd All rights reserved http://dx.doi.org/10.1016/j.cub.2014.10.016 Report Phylogenomic Resolution of the Hemichordate and Echinoderm Clade Johanna T. Cannon,1,2,5,* Kevin M. Kocot,1,3,5 history. Although debates surround chordate interrelation- Damien S. Waits,1 David A. Weese,1,4 Billie J. Swalla,5 ships [2, 4, 12] as well as the positions of the controversial Scott R. Santos,1 and Kenneth M. Halanych1,5,* flatworm-like Xenoturbellida [2, 13] and Acoelomorpha [13], 1Department of Biological Sciences and Molette Biology Ambulacraria (Hemichordata + Echinodermata) has been Laboratory for Environmental and Climate Change Studies, consistently recovered [2, 4, 13]. Relationships within these Auburn University, Auburn, AL 36849, USA two phyla, however, have remained unresolved, and numbers 2Department of Zoology, Naturhistoriska Riksmuseet, of sampled hemichordate taxa in phylogenomic studies to 104 05 Stockholm, Sweden date have been limited. Within Hemichordata, there is dispute 3School of Biological Sciences, University of Queensland, as to whether colonial, tube-dwelling pterobranchs are sister Brisbane, QLD 4072, Australia to, or nested within, vermiform enteropneusts [1, 5–7, 14]. 4Department of Biological and Environmental Sciences, Placement of pterobranchs has major implications for under- Georgia College and State University, Milledgeville, standing origins and early evolution of graptolite hemichor- GA 31061, USA dates, which have an extensive fossil record [15]. Furthermore, 5Friday Harbor Laboratories, University of Washington, there are conflicting hypotheses regarding the position of 620 University Road, Friday Harbor, WA 98250, USA ophiuroid brittle stars within echinoderms. -
Hemichordata: Enteropneusta
TERMS OF USE This pdf is provided by Magnolia Press for private/research use. Commercial sale or deposition in a public library or website is prohibited. Zootaxa 2483: 1–22 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) A revision of the genus Saccoglossus (Hemichordata: Enteropneusta: Harrimaniidae) with taxonomic descriptions of five new species from the Eastern Pacific C.B. CAMERON1,4, C. DELAND1 & T.H. BULLOCK2,3 1Sciences biologiques, Université de Montréal, C.P. 6128, Succ. Centre-ville, Montréal, QC, H3C 3J7, Canada 2Scripps Institution of Oceanography and Department of Neurosciences, School of Medicine, University of California San Diego, La Jolla, California, U.S.A. 3Deceased 4Corresponding author. E-mail: [email protected] Abstract Here we describe five new North Eastern Pacific species of acorn worms in the genus Saccoglossus (S. porochordus, S. rhabdorhyncus, S. shumaginensis, S. sonorensis, and S. palmeri) on the basis of morphology. Notes on the habit and localization of each species are provided. A summary table lists the morphological characters defining the five new species and ten previously described ones in the genus Saccoglossus. Observation on the biogeography of Enteropneusta suggests that it is an ancient and declining group. Key words: Enteropneusta, acorn worms, Harrimaniidae, new species, zoogeography Introduction Saccoglossus is the most speciose enteropneust genus, even after Deland et al. (2010) transferred five species of Saccoglossus to other genera. It contains 18 species worldwide including two (S. pusillus, S. bromophenolosus) from the Eastern Pacific. It may be more speciose than some ptychoderids because it does not have a pelagic larva and thus a low dispersal distance, increasing opportunity for speciation. -
Hemichordate Genomes and Deuterostome Origins
OPEN ARTICLE doi:10.1038/nature16150 Hemichordate genomes and deuterostome origins Oleg Simakov1,2*, Takeshi Kawashima3†*, Ferdinand Marlétaz4, Jerry Jenkins5, Ryo Koyanagi6, Therese Mitros7, Kanako Hisata3, Jessen Bredeson7, Eiichi Shoguchi3, Fuki Gyoja3, Jia-Xing Yue8†, Yi-Chih Chen9, Robert M. Freeman Jr10†, Akane Sasaki11, Tomoe Hikosaka-Katayama12, Atsuko Sato13, Manabu Fujie6, Kenneth W. Baughman3, Judith Levine14, Paul Gonzalez14, Christopher Cameron15, Jens H. Fritzenwanker14, Ariel M. Pani16, Hiroki Goto6, Miyuki Kanda6, Nana Arakaki6, Shinichi Yamasaki6, Jiaxin Qu17, Andrew Cree17, Yan Ding17, Huyen H. Dinh17, Shannon Dugan17, Michael Holder17, Shalini N. Jhangiani17, Christie L. Kovar17, Sandra L. Lee17, Lora R. Lewis17, Donna Morton17, Lynne V. Nazareth17, Geoffrey Okwuonu17, Jireh Santibanez17, Rui Chen17, Stephen Richards17, Donna M. Muzny17, Andrew Gillis18, Leonid Peshkin10, Michael Wu7, Tom Humphreys19, Yi-Hsien Su9, Nicholas H. Putnam8†, Jeremy Schmutz5, Asao Fujiyama20, Jr-Kai Yu9, Kunifumi Tagawa11, Kim C. Worley17, Richard A. Gibbs17, Marc W. Kirschner10, Christopher J. Lowe14, Noriyuki Satoh3, Daniel S. Rokhsar1,7,21 & John Gerhart7 Acorn worms, also known as enteropneust (literally, ‘gut-breathing’) hemichordates, are marine invertebrates that share features with echinoderms and chordates. Together, these three phyla comprise the deuterostomes. Here we report the draft genome sequences of two acorn worms, Saccoglossus kowalevskii and Ptychodera flava. By comparing them with diverse bilaterian genomes, we identify shared traits that were probably inherited from the last common deuterostome ancestor, and then explore evolutionary trajectories leading from this ancestor to hemichordates, echinoderms and chordates. The hemichordate genomes exhibit extensive conserved synteny with amphioxus and other bilaterians, and deeply conserved non-coding sequences that are candidates for conserved gene-regulatory elements. -
Bromophenolosus and Protoglossus Graveolens
MARINE ECOLOGY PROGRESS SERIES l Vol. 159: 229-238. 1997 Published November 29 Mar Ecol Prog Ser Predator deterrence and 2,4-dibromophenol conservation by the enteropneusts Saccoglossus bromophenolosus and Protoglossus graveolens Cem Giray, Gary M. King* Darling Marine Center, University of Maine. Walpole. Maine 04573, USA ABSTRACT: Saccoglossus Dromophenolosc~sIng et al., 1994 and Protoglossus graveolens Giray & Klng, 1996 contain high concentratlons of 2,4-dibromophenol (DBP),the functlon of whlch is uncertain. Mature enteropneusts that were collected from the field and maintamed in v~trowithout bromide retained DBP, which is inconsistent wlth actlve DBP secretion into the burrow env~ronment.DBP was also conserved during field manipulations that decreased food availability in situ. Further, DBP did not deter predation in feeding experiments 1~1ththe anomuran crab Pagurus longicarpus and the poly- chaetes Glycera dibranchiata, Nereis virens and Nephtysincisa. The hermit crabs fed on S. brornophe- nolosus readily, and in preference to shrimp, in the field and in laboratory aquaria. Elevated DBP levels were measured in crabs that had recently consumed S. bromophenolosus, and ingested DBP was degraded to 4-bromophenol. Elevated levels of DBP in polychaetes were associated with the disap- pearance of enteropneusts during in vitro feeding experiments. Control incubations with DBP-contain- ing agar plugs indicated that the polychaetes did not accumulate DBP passively. These results suggest that DBP is not an effective anti-predatory agent against hermit crabs or some predatory polychaetes. A definitive role for DBP in enteropneusts remains to be shown. KEY WORDS: Enteropneusts . Bromophenols . Bromine . Chemical defense - Predation . Polychaetes . Hermit crabs. Starvation INTRODUCTION age tissue concentrations of 44 and 82 pm01 g-' dry wt, respectively. -
The Phylogeny of the Hemichordata and Ecology of Two New Enteropneust Species from Barkley Sound
University of Aiberta THE PHYLOGENY OF THE HEMICHORDATA AND ECOLOGY OF TWO NEW ENTEROPNEUST SPECIES FROM BARKLEY SOUND Christopher B. Cameron O .A thesis submitted to the Facultv of Graduate Studies and Research in partial hlfillment of the requirernents for the degree of Doctor of Philosophy in Systematics and Evolution Department of BiologicaI Sciences Edmonton, Alberta Fa11 2000 National Library Bibliothèque nationale 1*1 of Canada du Canada Acquisitions and Acquisitions et Bibliographie Services services bibliographiques 395 Wellington Street 395. nie Wellington Ottawa ON K1A ON4 Ottawa ON KIA ON4 Canada Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence allowing the exclusive permettant à la National Librq of Canada to Bibliothèque nationale du Canada de reproduce, loan, distribute or sell reproduire, prêter, distribuer ou copies of this thesis in rnicrofomt, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/fïlm, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fkom it Ni la thèse ni des extraits substantiels may be printed or othewise de celle-ci ne doivent être imprimés reproduced without the author' s ou autrement reproduits sans son permission. autorisation. Abstract Hemichordates, as represented by the classes Enteropneusta and Pterobranchia, are pivotal to arguments about both deuterostome and chordate origins. The morphological disparity of the two classes suggests two sharply contrasting hypotheses. The earliest protochordate resembled: 1) a burrowing, worm-like, deposit-feeding enteropneust, or 2) a sessile, suspension-feeding, bryozoan-like pterobranch.