Pulau Sebuku Vegetation Study
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Morphological and Molecular Barcode Analysis of the Medicinal Tree Mimusops Coriacea (A.DC.) Miq
Morphological and molecular barcode analysis of the medicinal tree Mimusops coriacea (A.DC.) Miq. collected in Ecuador Katherine Bustamante1, Efrén Santos-Ordóñez2,3, Migdalia Miranda4, Ricardo Pacheco2, Yamilet Gutiérrez5 and Ramón Scull5 1 Facultad de Ciencias Químicas, Ciudadela Universitaria “Salvador Allende,” Universidad de Guayaquil, Guayaquil, Ecuador 2 Centro de Investigaciones Biotecnológicas del Ecuador, ESPOL Polytechnic University, Escuela Superior Politécnica del Litoral, ESPOL, Guayaquil, Ecuador 3 Facultad de Ciencias de la Vida, ESPOL Polytechnic University, Escuela Superior Politécnica del Litoral, ESPOL, Guayaquil, Ecuador 4 Facultad de Ciencias Naturales y Matemáticas, ESPOL Polytechnic University, Escuela Superior Politécnica del Litoral, ESPOL, Guayaquil, Ecuador 5 Instituto de Farmacia y Alimentos, Universidad de La Habana, Ciudad Habana, Cuba ABSTRACT Background: Mimusops coriacea (A.DC.) Miq., (Sapotaceae), originated from Africa, were introduced to coastal areas in Ecuador where it is not extensively used as a traditional medicine to treat various human diseases. Different therapeutically uses of the species include: analgesic, antimicrobial, hypoglycemic, inflammation and pain relieve associated with bone and articulation-related diseases. Furthermore, Mimusops coriacea could be used as anti-oxidant agent. However, botanical, chemical or molecular barcode information related to this much used species is not available from Ecuador. In this study, morphological characterization was performed from leaves, stem and seeds. Furthermore, genetic characterization was performed using molecular barcodes for rbcL, matk, ITS1 and ITS2 using DNA extracted from leaves. Methods: Macro-morphological description was performed on fresh leaves, stem Submitted 25 March 2019 and seeds. For anatomical evaluation, tissues were embedded in paraffin and Accepted 29 August 2019 transversal dissections were done following incubation with sodium hypochlorite Published 11 October 2019 and safranin for coloration and fixated later in glycerinated gelatin. -
Influence of the Edge Effect and Other Selected Abiotic Factors on Tree Seedling Density and Species Richness in a Tropical Forest in Singapore
Influence of the Edge Effect and Other Selected Abiotic Factors on Tree Seedling Density and Species Richness in a Tropical Forest in Singapore Galen Tiong Ji Liang, Eun Jung Min, Jeremy Yu King Yan NUS High School of Mathematics & Science Little Green Dot Student Research Grant PROJECT REPORT submitted to Nature Society (Singapore) Junior College Category Year 4 & 5 2810 words 1 Influence of the Edge Effect and Other Selected Abiotic Factors on Tree Seedling Density and Species Richness in a Tropical Forest in Singapore Tiong Ji Liang Galen1, Eun Jung Min1, Jeremy Yu King Yan1, Alex Yee Thiam Koon2 Lee Siak Cheong1, Hugh Tan Tiang Wah2 1NUS High School of Mathematics and Science, 330 Clementi Avenue 1, Singapore 129953 2Botany Laboratory, Department of Biological Sciences, National University of Singapore 14 Science Drive 4, Singapore 117543 Abstract Though the edge effect in tropical forests is a well-researched topic, studies pertaining to its influence on seedling dynamics are rare. We examined the effect of distance-to-edge and environmental variables on seedling density and species richness. We constructed 48 1 × 1 m seed plot quadrats in the MacRitchie Reservoir forest area, where we measured leaf litter depth, canopy cover and soil pH. All woody stemmed seedlings > 20 cm to < 1.3 m tall were tagged, identified and were measured for their basal stem diameter and height. Our analyses demonstrated that the edge effect influenced seedling species richness but not density, with lower species richness observed in the edge compared to the forest interior. Overall, seedling density was affected by canopy cover, leaf litter, the cover-litter interaction term, while species richness was primarily influenced by distance to edge and canopy cover. -
Biomolecules of Interest Present in the Main Industrial Wood Species Used in Indonesia-A Review
Tech Science Press DOI: 10.32604/jrm.2021.014286 REVIEW Biomolecules of Interest Present in the Main Industrial Wood Species Used in Indonesia-A Review Resa Martha1,2, Mahdi Mubarok1,2, Wayan Darmawan2, Wasrin Syafii2, Stéphane Dumarcay1, Christine Gérardin Charbonnier1 and Philippe Gérardin1,* 1Université de Lorraine, Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement, Laboratoire d'Etudes et de Recherche sur le Matériau Bois, Nancy, France 2Department of Forest Products, Faculty of Forestry and Environment, Institut Pertanian Bogor, Bogor University, Bogor, Indonesia *Corresponding Author: Philippe Gérardin. Email: [email protected] Received: 17 September 2020 Accepted: 20 October 2020 ABSTRACT As a tropical archipelagic country, Indonesia’s forests possess high biodiversity, including its wide variety of wood species. Valorisation of biomolecules released from woody plant extracts has been gaining attractive interests since in the middle of 20th century. This paper focuses on a literature review of the potential valorisation of biomole- cules released from twenty wood species exploited in Indonesia. It has revealed that depending on the natural origin of the wood species studied and harmonized with the ethnobotanical and ethnomedicinal knowledge, the extractives derived from the woody plants have given valuable heritages in the fields of medicines and phar- macology. The families of the bioactive compounds found in the extracts mainly consisted of flavonoids, stilbenes, stilbenoids, lignans, tannins, simple phenols, terpenes, terpenoids, alkaloids, quinones, and saponins. In addition, biological or pharmacological activities of the extracts/isolated phytochemicals were recorded to have antioxidant, antimicrobial, antifungal, anti-inflammatory, anti-diabetes, anti-dysentery, anticancer, analgesic, anti-malaria, and anti-Alzheimer activities. -
Obdiplostemony: the Occurrence of a Transitional Stage Linking Robust Flower Configurations
Annals of Botany 117: 709–724, 2016 doi:10.1093/aob/mcw017, available online at www.aob.oxfordjournals.org VIEWPOINT: PART OF A SPECIAL ISSUE ON DEVELOPMENTAL ROBUSTNESS AND SPECIES DIVERSITY Obdiplostemony: the occurrence of a transitional stage linking robust flower configurations Louis Ronse De Craene1* and Kester Bull-Herenu~ 2,3,4 1Royal Botanic Garden Edinburgh, Edinburgh, UK, 2Departamento de Ecologıa, Pontificia Universidad Catolica de Chile, 3 4 Santiago, Chile, Escuela de Pedagogıa en Biologıa y Ciencias, Universidad Central de Chile and Fundacion Flores, Ministro Downloaded from https://academic.oup.com/aob/article/117/5/709/1742492 by guest on 24 December 2020 Carvajal 30, Santiago, Chile * For correspondence. E-mail [email protected] Received: 17 July 2015 Returned for revision: 1 September 2015 Accepted: 23 December 2015 Published electronically: 24 March 2016 Background and Aims Obdiplostemony has long been a controversial condition as it diverges from diploste- mony found among most core eudicot orders by the more external insertion of the alternisepalous stamens. In this paper we review the definition and occurrence of obdiplostemony, and analyse how the condition has impacted on floral diversification and species evolution. Key Results Obdiplostemony represents an amalgamation of at least five different floral developmental pathways, all of them leading to the external positioning of the alternisepalous stamen whorl within a two-whorled androe- cium. In secondary obdiplostemony the antesepalous stamens arise before the alternisepalous stamens. The position of alternisepalous stamens at maturity is more external due to subtle shifts of stamens linked to a weakening of the alternisepalous sector including stamen and petal (type I), alternisepalous stamens arising de facto externally of antesepalous stamens (type II) or alternisepalous stamens shifting outside due to the sterilization of antesepalous sta- mens (type III: Sapotaceae). -
Forests Beneath the Grass
FoForestsrests beneathBeneath the grassGrass Proceedings of the regional workshop on advancing the application of assisted natural regeneration for eective low-cost forest restoration Naturally-regenerated young tree seedling hidden under the grass RAP PUBLICATION 2010/11 Forests beneath the grass Proceedings of the Regional Workshop on Advancing the Application of Assisted Natural Regeneration for Effective Low-Cost Restoration Bohol, Philippines, 19-22 May 2009 Edited by Patrick B. Durst, Percy Sajise and Robin N. Leslie FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS REGIONAL OFFICE FOR ASIA AND THE PACIFIC Bangkok, 2011 The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed or recommended by FAO in preference to others of a similar nature that are not mentioned. ISBN 978-92-5-106639-3 All rights reserved. FAO encourages reproduction and dissemination of material in this information product. Non-commercial uses will be authorized free of charge. Reproduction for resale or other commercial purposes, including educational purposes, may incur fees. Applications for permission to reproduce or disseminate FAO copyright materials and all other queries on rights and licences, should be addressed by e-mail to [email protected] or to the Chief, Publishing Policy and Support Branch, Office of Knowledge Exchange, Research and Extension, FAO,Viale delle Terme di Caracalla, 00153 Rome, Italy. -
Accounting for Variation of Substitution Rates Through Time in Bayesian Phylogeny Reconstruction of Sapotoideae (Sapotaceae)
Molecular Phylogenetics and Evolution 39 (2006) 706–721 www.elsevier.com/locate/ympev Accounting for variation of substitution rates through time in Bayesian phylogeny reconstruction of Sapotoideae (Sapotaceae) Jenny E.E. Smedmark ¤, Ulf Swenson, Arne A. Anderberg Department of Phanerogamic Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden Received 9 September 2005; revised 4 January 2006; accepted 12 January 2006 Available online 21 February 2006 Abstract We used Bayesian phylogenetic analysis of 5 kb of chloroplast DNA data from 68 Sapotaceae species to clarify phylogenetic relation- ships within Sapotoideae, one of the two major clades within Sapotaceae. Variation in substitution rates through time was shown to be a very important aspect of molecular evolution for this data set. Relative rates tests indicated that changes in overall rate have taken place in several lineages during the history of the group and Bayes factors strongly supported a covarion model, which allows the rate of a site to vary over time, over commonly used models that only allow rates to vary across sites. Rate variation over time was actually found to be a more important model component than rate variation across sites. The covarion model was originally developed for coding gene sequences and has so far only been tested for this type of data. The fact that it performed so well with the present data set, consisting mainly of data from noncoding spacer regions, suggests that it deserves a wider consideration in model based phylogenetic inference. Repeatability of phylogenetic results was very diYcult to obtain with the more parameter rich models, and analyses with identical settings often supported diVerent topologies. -
Vascular Plant Composition and Diversity of a Coastal Hill Forest in Perak, Malaysia
www.ccsenet.org/jas Journal of Agricultural Science Vol. 3, No. 3; September 2011 Vascular Plant Composition and Diversity of a Coastal Hill Forest in Perak, Malaysia S. Ghollasimood (Corresponding author), I. Faridah Hanum, M. Nazre, Abd Kudus Kamziah & A.G. Awang Noor Faculty of Forestry, Universiti Putra Malaysia 43400, Serdang, Selangor, Malaysia Tel: 98-915-756-2704 E-mail: [email protected] Received: September 7, 2010 Accepted: September 20, 2010 doi:10.5539/jas.v3n3p111 Abstract Vascular plant species and diversity of a coastal hill forest in Sungai Pinang Permanent Forest Reserve in Pulau Pangkor at Perak were studied based on the data from five one hectare plots. All vascular plants were enumerated and identified. Importance value index (IVI) was computed to characterize the floristic composition. To capture different aspects of species diversity, we considered five different indices. The mean stem density was 7585 stems per ha. In total 36797 vascular plants representing 348 species belong to 227 genera in 89 families were identified within 5-ha of a coastal hill forest that is comprises 4.2% species, 10.7% genera and 34.7% families of the total taxa found in Peninsular Malaysia. Based on IVI, Agrostistachys longifolia (IVI 1245), Eugeissona tristis (IVI 890), Calophyllum wallichianum (IVI 807), followed by Taenitis blechnoides (IVI 784) were the most dominant species. The most speciose rich families were Rubiaceae having 27 species, followed by Dipterocarpaceae (21 species), Euphorbiaceae (20 species) and Palmae (14 species). According to growth forms, 57% of all species were trees, 13% shrubs, 10% herbs, 9% lianas, 4% palms, 3.5% climbers and 3% ferns. -
Vegetation Analyses of Sebangau Peat Swamp Forest, Central Kalimantan
BIODIVERSITAS ISSN: 1412-033X (printed edition) Volume 11, Number 2, April 2010 ISSN: 2085-4722 (electronic) Pages: 82-88 Vegetation analyses of Sebangau peat swamp forest, Central Kalimantan EDI MIRMANTO♥ Botany Division, Research Centre for Biology, Indonesian Institute of Sciences (LIPI), Jl. Raya Bogor-Jakarta km 46, Cibinong-Bogor 16911, West Java, Indonesia, Tel.: +62-21-8765066/7, Fax.: +62-21-8765063, email: [email protected] Manuscript received: 24 June 2009. Revision accepted: 16 September 2009. ABSTRACT Mirmanto E (2010) Vegetation analyses of Sebangau peat swamp forest, Central Kalimantan. Biodiversitas 11: 82-88. The vegetation analysis study has been made in Sebangau peat-swamp forest, Central Kalimantan. Eight permanent plots of 50-m x 50-m were set-up distribute from close to the river with shallow peat-layer up to the inland with relatively deep peat-layer. Enumeration of trees (GBH > 15 cm) was conducted in all of 8 plots. Overall there are 133 species (taxa) were recorded within 8 plots belong to 34 families where Dipterocarpaceae, Clusiaceae, Myrtaceae and Sapotaceae were the most dominant family. Out of all species recorded, Combretocarpus rotundatus, Palaquium leiocarpum, Stemonurus scorpioides and Tristania whittiana were the most dominant species. Two community’s types namely Combretocarpus rotundatus-Shorea balangeran community and Palaquium leiocarpum-Eugenia densinervium community were recognized and they distributed in slightly different habitat condition. The sequence of these two communities’ shows significantly related to both distances to river and peat-depth. In addition there was indication the presence of habitat preference among tree species. Key words: vegetation, peat-swamp, community, Sebangau, Central Kalimantan. -
PERKECAMBAHAN DAN PENYIMPANAN BIJI NYATOH (Palaquium Rostratum (Miq.) Burck)
PERKECAMBAHAN DAN PENYIMPANAN BIJI NYATOH (Palaquium rostratum (Miq.) Burck) Elly Kristiati Agustin dan Hary Wawangningrum Pusat Konservasi Tumbuhan Kebun Raya Bogor-LIPI Jl. Ir. H. Juanda No. 13 Bogor email: [email protected] ABSTRACT Palaquium rostratum is a gigantic tree found in the Malay Peninsula, Sumatra, Borneo, and Java; in the Peninsula it has been obtained in Penang, Perak, Pahang, and Singapore, in a way that suggests that it is of general distribution; but by towering above the forest canopy it is easily overlooked. The research was conducted to study the seed germination of P. rostratum and to study the effect of seed storage. The study was carried out in the Bogor Botanic Gardens on February 2008. Seeds of P. rostratum were starting to germinate epigeally in 17 days after sowing and the seeds can be stored at room temperature for two week with a viability of 61.32% and 26.41% water content. Key words: Germination, viability, storage, Palaquium rostratum. PENDAHULUAN Palaquium merupakan marga tumbuhan tropis anggota suku Sapotaceae, terdiri atas 110 jenis dan tersebar dari India Barat dan Sri Lanka sampai China Selatan dan Polynesia Timur (Samoa). Pusat penyebaran ialah Malesia Barat, kebanyakan ditemukan di Filiphina (30 jenis) dan Borneo (35 jenis), beberapa diantaranya endemik (Soerianegara et al. (eds.) 1994). Palaquium rostratum yang merupakan flora identitas Bangka Belitung memiliki nama Internasional gutta percha. Sinonim tumbuhan ini yaitu Palaquium bancanum Burck dan Croixia rostrata (Miq.) Baehni. Pada tiap daerah P. rostratum memiliki nama yang berlainan diantaranya: balam bakulo (Palembang), balam pucung (Kubu), nyatoh darat (Bangka), nyatoh pisang (Bangka & Belitung), balam pucung, nyatoh terung, pulai pipit (Minangkabau), nyatoh terung (Lampung), nagasari (Jawa). -
Assessing the Role of Seed Dispersal in Peat Swamp Forest Regeneration
Assessing the Role of Seed Dispersal in Peat Swamp Forest Regeneration Cassie Freund Submitted in partial fulfillment of the requirements for the degree Master of Arts in Conservation Biology, Graduate School of Arts and Sciences COLUMBIA UNIVERSITY May 2012 i ABSTRACT Both biotic and abiotic factors, especially seed dispersal, influence the process of forest regeneration, but there has been relatively little research on these factors in peat swamp forest ecosystems. Large-scale forest fires are the biggest disturbance affecting peat swamp forests, especially in the heavily degraded peatlands of Central Kalimantan, Indonesia. It is important to examine the barriers to forest regeneration in this system because peat swamp forest provides important ecosystem services for people and habitat for Indonesia’s unique biodiversity. Several studies have suggested that seed dispersal limitation will be one of the most significant barriers to peat swamp forest regeneration. This study examined the composition of regenerating seedlings and saplings in the former Mega-Rice project area to determine if there was evidence for seed dispersal limitation in general, and how species with different seed dispersal mechanisms (wind, bird or bat, and primate) were distributed across the landscape. The results indicate that (1) there are more primary forest species present in the regenerating flora than expected and (2) seedling and sapling abundance is highest near the forest edge, declining significantly as distance from the edge increases. As predicted, primate-dispersed species were the most dispersal limited, and wind dispersed species were found at the furthest distances from the forest edge. However, of the species with known dispersal mechanisms, bird and bat dispersed species were the most common, suggesting that these animals play a significant role in peat swamp forest regeneration. -
Plant Exudates and Amber: Their Origin and Uses
Plant Exudates and Amber: Their Origin and Uses Jorge A. Santiago-Blay and Joseph B. Lambert lants produce and export many different some other plant pathology. In other instances, molecules out of their cellular and organ- such as in typical underground roots, exudate Pismal confines. Some of those chemicals production appears to be part of the typical become so abundant that we can see or smell metabolism of healthy plants that helps stabi- them. The most visible materials oozed by lize the soil and foster interactions with other many plants are called “exudates.” organisms around the roots. What are plant exudates? Generally, exudates Different plant tissue types and organs can are carbon-rich materials that many plants pro- produce exudates. We have collected resins and duce and release externally. When exudates are gums from the above ground portions of plants, produced, they are often sticky to human touch. or shoots, as well as from the generally below Such plant chemicals can be the visible expres- ground portion of plants, or roots. Root exuda- sion of attack by bacteria, fungi, herbivores, or tion has been known for decades and is respon- REPRODUCED WITH PERMISSION OF AMERICAN SCIENTIST Resinous exudates on a conifer. ALL PHOTOGRAPHS BY JORGE A. SANTIAGO-BLAY UNLESS OTHERWISE NOTED UNLESS OTHERWISE ALL PHOTOGRAPHS BY JORGE A. SANTIAGO-BLAY Prolific white, resinous exudation is seen on a tumor- Blobs of white resin on a relatively young shoot of a like growth on the trunk of a white pine (Pinus strobus) Japanese black pine (Pinus thunbergii, AA accession at the Arnold Arboretum. -
Forest'assessment'of'''''''''''''''''' Lower'sugut'forest'reserve'
FOREST'ASSESSMENT'OF'''''''''''''''''' LOWER'SUGUT'FOREST'RESERVE' Reuben&Nilus&&&John&B.&Sugau&&&&&&&&&&&&&&&&&&&&&&&&! FOREST!RESEARCH!CENTRE!!!!!!!!!!!!!!!!!!!!!! FEBRUARY!2015! FOREST ASSESSMENT OF LOWER SUGUT FOREST RESERVES FOREST ASSESSMENT OF LOWER SUGUT FOREST RESERVE Reuben Nilus & John B. Sugau Sabah Forestry Department February 2015 INTRODUCTION Lower Sugut Forest Reserve (LSFR) is a Class I Protection Forest with a total area of 8,680 ha (Fig. 1). The Beluran District Forestry Office administers the reserve. The Forestry Department through the Forest Research Centre has conducted forest quality assessment in Lower Sugut FR from the 22th till 27th September 2014. The objective of the survey is to determine vegetation quality in the various forest types. This information will provide forest ecosystems background for Lower Sugut Forest Management Unit. STUDY SITE Location and access Lower Sugut FR is situated about 75 km northwest of Sandakan town (Fig. 1). It is geographically located between latitude 06° 16’ 44.9”–06° 24’ 32.3” N and longitude 117° 02’ 19.6”–117° 21’ 14.9” E. The reserve can be accessed through Sapi–Nangoh highway and traverse through IJM oil palm estate; and also through the sea by boat. Soil There are seven major soil association underlie Lower Sugut FR (Fig. 2). About 69% of the FMU is affected by high water table: 30% under tidal influenced and the soil is categorised as Weston association; 39% under freshwater influenced and categorised as Sapi (26%), Kinabatangan (12%) and Klias (15 ha) soil associations. The other soil associations that consider as dryland, such as Maliau and Tanjung Aru associations that underlie 19% and 11% of the reserve area, respectively, are categorised as intermediate fertily in plant nutrient aspect (Acres et al., 1975).