IOP PUBLISHING JOURNAL OF PHYSICS A: MATHEMATICAL AND THEORETICAL J. Phys. A: Math. Theor. 43 (2010) 045208 (28pp) doi:10.1088/1751-8113/43/4/045208 The linking number and the writhe of uniform random walks and polygons in confined spaces E Panagiotou1, K C Millett2 and S Lambropoulou1 1 Department of Mathematics, National Technical University of Athens, Zografou Campus, GR 15780, Athens, Greece 2 Department of Mathematics, University of California, Santa Barbara, CA 93106, USA E-mail:
[email protected],
[email protected] and sofi
[email protected] Received 13 July 2009, in final form 5 November 2009 Published 4 January 2010 Online at stacks.iop.org/JPhysA/43/045208 Abstract Random walks and polygons are used to model polymers. In this paper we consider the extension of the writhe, self-linking number and linking number to open chains. We then study the average writhe, self-linking and linking number of random walks and polygons over the space of configurations as a function of their length. We show that the mean squared linking number, the mean squared writhe and the mean squared self-linking number of oriented uniform random walks or polygons of length n, in a convex confined space, are of the form O(n2). Moreover, for a fixed simple closed curve in a convex confined space, we prove that the mean absolute value of the linking number between this√ curve and a uniform random walk or polygon of n edges is of the form O( n). Our numerical studies confirm those results. They also indicate that the mean absolute linking number between any two oriented uniform random walks or polygons, of n edges each, is of the form O(n).