Yeast-Insect Associations: It Takes Guts
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Advances in Genetics, Development, and Evolution of Drosophila
springer.com Seppo Lakovaara (Hrsg.) Advances in Genetics, Development, and Evolution of Drosophila In 1906 Castle, Carpenter, Clarke, Mast, and Barrows published a paper entitled "The effects of inbreeding, cross-breeding, and selection upon the fertility and variability of Drosophila." This article, 55 pages long and published in the Proceedings of the Amer• ican Academy, described experiments performed with Drosophila ampe• lophila Lov, "a small dipterous insect known under various popular names such as the little fruit fly, pomace fly, vinegar fly, wine fly, and pickled fruit fly." This study, which was begun in 1901 and published in 1906, was the first published experimental study using Drosophila, subsequently known as Drosophila melanogaster Meigen. Of course, Drosophila was known before the experiments of Cas• tles's group. The small flies swarming around grapes and wine pots have surely been known as long Softcover reprint of the original 1st ed. as wine has been produced. The honor of what was the first known misclassification of the 1982, X, 474 p. fruit flies goes to Fabricius who named them Musca funebris in 1787. It was the Swedish dipterist, C.F. Fallen, who in 1823 changed the name of ~ funebris to Drosophila funebris Gedrucktes Buch which was heralding the beginning of the genus Drosophila. Present-day Drosophila research Softcover was started just 80 years ago and first published only 75 years ago. Even though the history 119,99 € | £109.99 | $149.99 of Drosophila research is short, the impact and volume of study on Drosophila has been [1]128,39 € (D) | 131,99 € (A) | CHF tremendous during the last decades. -
Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina)
| YEASTBOOK GENOME ORGANIZATION AND INTEGRITY Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina) Bernard A. Dujon*,†,1 and Edward J. Louis‡,§ *Department Genomes and Genetics, Institut Pasteur, Centre National de la Recherche Scientifique UMR3525, 75724-CEDEX15 Paris, France, †University Pierre and Marie Curie UFR927, 75005 Paris, France, ‡Centre for Genetic Architecture of Complex Traits, and xDepartment of Genetics, University of Leicester, LE1 7RH, United Kingdom ORCID ID: 0000-0003-1157-3608 (E.J.L.) ABSTRACT Considerable progress in our understanding of yeast genomes and their evolution has been made over the last decade with the sequencing, analysis, and comparisons of numerous species, strains, or isolates of diverse origins. The role played by yeasts in natural environments as well as in artificial manufactures, combined with the importance of some species as model experimental systems sustained this effort. At the same time, their enormous evolutionary diversity (there are yeast species in every subphylum of Dikarya) sparked curiosity but necessitated further efforts to obtain appropriate reference genomes. Today, yeast genomes have been very informative about basic mechanisms of evolution, speciation, hybridization, domestication, as well as about the molecular machineries underlying them. They are also irreplaceable to investigate in detail the complex relationship between genotypes and phenotypes with both theoretical and practical implications. This review examines these questions at two distinct levels offered by the broad evolutionary range of yeasts: inside the best-studied Saccharomyces species complex, and across the entire and diversified subphylum of Saccharomycotina. While obviously revealing evolutionary histories at different scales, data converge to a remarkably coherent picture in which one can estimate the relative importance of intrinsic genome dynamics, including gene birth and loss, vs. -
Expanding the Knowledge on the Skillful Yeast Cyberlindnera Jadinii
Journal of Fungi Review Expanding the Knowledge on the Skillful Yeast Cyberlindnera jadinii Maria Sousa-Silva 1,2 , Daniel Vieira 1,2, Pedro Soares 1,2, Margarida Casal 1,2 and Isabel Soares-Silva 1,2,* 1 Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; [email protected] (M.S.-S.); [email protected] (D.V.); [email protected] (P.S.); [email protected] (M.C.) 2 Institute of Science and Innovation for Bio-Sustainability (IB-S), University of Minho, 4710-057 Braga, Portugal * Correspondence: [email protected]; Tel.: +351-253601519 Abstract: Cyberlindnera jadinii is widely used as a source of single-cell protein and is known for its ability to synthesize a great variety of valuable compounds for the food and pharmaceutical industries. Its capacity to produce compounds such as food additives, supplements, and organic acids, among other fine chemicals, has turned it into an attractive microorganism in the biotechnology field. In this review, we performed a robust phylogenetic analysis using the core proteome of C. jadinii and other fungal species, from Asco- to Basidiomycota, to elucidate the evolutionary roots of this species. In addition, we report the evolution of this species nomenclature over-time and the existence of a teleomorph (C. jadinii) and anamorph state (Candida utilis) and summarize the current nomenclature of most common strains. Finally, we highlight relevant traits of its physiology, the solute membrane transporters so far characterized, as well as the molecular tools currently available for its genomic manipulation. -
Taxonomy, Biogeography, and Notes on Termites (Isoptera: Kalotermitidae, Rhinotermitidae, Termitidae) of the Bahamas and Turks and Caicos Islands
SYSTEMATICS Taxonomy, Biogeography, and Notes on Termites (Isoptera: Kalotermitidae, Rhinotermitidae, Termitidae) of the Bahamas and Turks and Caicos Islands RUDOLF H. SCHEFFRAHN,1 JAN KRˇ ECˇ EK,1 JAMES A. CHASE,2 BOUDANATH MAHARAJH,1 3 AND JOHN R. MANGOLD Ann. Entomol. Soc. Am. 99(3): 463Ð486 (2006) ABSTRACT Termite surveys of 33 islands of the Bahamas and Turks and Caicos (BATC) archipelago yielded 3,533 colony samples from 593 sites. Twenty-seven species from three families and 12 genera were recorded as follows: Cryptotermes brevis (Walker), Cr. cavifrons Banks, Cr. cymatofrons Schef- Downloaded from frahn and Krˇecˇek, Cr. bracketti n. sp., Incisitermes bequaerti (Snyder), I. incisus (Silvestri), I. milleri (Emerson), I. rhyzophorae Herna´ndez, I. schwarzi (Banks), I. snyderi (Light), Neotermes castaneus (Burmeister), Ne. jouteli (Banks), Ne. luykxi Nickle and Collins, Ne. mona Banks, Procryptotermes corniceps (Snyder), and Pr. hesperus Scheffrahn and Krˇecˇek (Kalotermitidae); Coptotermes gestroi Wasmann, Heterotermes cardini (Snyder), H. sp., Prorhinotermes simplex Hagen, and Reticulitermes flavipes Koller (Rhinotermitidae); and Anoplotermes bahamensis n. sp., A. inopinatus n. sp., Nasuti- termes corniger (Motschulsky), Na. rippertii Rambur, Parvitermes brooksi (Snyder), and Termes http://aesa.oxfordjournals.org/ hispaniolae Banks (Termitidae). Of these species, three species are known only from the Bahamas, whereas 22 have larger regional indigenous ranges that include Cuba, Florida, or Hispaniola and beyond. Recent exotic immigrations for two of the regional indigenous species cannot be excluded. Three species are nonindigenous pests of known recent immigration. IdentiÞcation keys based on the soldier (or soldierless worker) and the winged imago are provided along with species distributions by island. Cr. bracketti, known only from San Salvador Island, Bahamas, is described from the soldier and imago. -
Oxylipin Distribution in Eremothecium
1 Oxylipin distribution in Eremothecium by Ntsoaki Joyce Leeuw Submitted in accordance with the requirements for the degree Magister Scientiae in the Department of Microbial, Biochemical and Food Biotechnology Faculty of Natural and Agricultural Sciences University of the Free State Bloemfontein South Africa Supervisor: Prof J.L.F. Kock Co- supervisors: Dr C.H. Pohl Prof P.W.J. Van Wyk November 2006 2 This dissertation is dedicated to the following people: My mother (Nkotseng Leeuw) My brother (Kabelo Leeuw) My cousins (Bafokeng, Lebohang, Mami, Thabang and Rorisang) Mr. Eugean Malebo 3 ACKNOWLEDGEMENTS I wish to thank and acknowledge the following: ) God, to You be the glory for the things You have done in my life. ) My family (especially my mom) – for always being there for me when I’m in need. ) Prof. J.L.F Kock for his patience, constructive criticisms and guidance during the course of this study. ) Dr. C.H. Pohl for her encouragement and assistance in the writing up of this dissertation. ) Mr. P.J. Botes for assistance with the GC-MS. ) Prof. P.W.J. Van Wyk and Miss B. Janecke for assistance with the CLSM and SEM. ) My fellow colleagues (especially Chantel and Desmond) for their assistance, support and encouragement. ) Mr. Eugean Malebo for always being there when I needed you. 4 CONTENTS Page Title page I Acknowledgements II Contents III CHAPTER 1 Introduction 1.1 Motivation 2 1.2 Definition and classification of yeasts 3 1.3 Classification of Eremothecium and related genera 5 1.4 Pathogenicity 12 1.5 Oxylipins 13 1.5.1 Definition -
Butterflies (Lepidoptera: Papilionoidea) in a Coastal Plain Area in the State of Paraná, Brazil
62 TROP. LEPID. RES., 26(2): 62-67, 2016 LEVISKI ET AL.: Butterflies in Paraná Butterflies (Lepidoptera: Papilionoidea) in a coastal plain area in the state of Paraná, Brazil Gabriela Lourenço Leviski¹*, Luziany Queiroz-Santos¹, Ricardo Russo Siewert¹, Lucy Mila Garcia Salik¹, Mirna Martins Casagrande¹ and Olaf Hermann Hendrik Mielke¹ ¹ Laboratório de Estudos de Lepidoptera Neotropical, Departamento de Zoologia, Universidade Federal do Paraná, Caixa Postal 19.020, 81.531-980, Curitiba, Paraná, Brazil Corresponding author: E-mail: [email protected]٭ Abstract: The coastal plain environments of southern Brazil are neglected and poorly represented in Conservation Units. In view of the importance of sampling these areas, the present study conducted the first butterfly inventory of a coastal area in the state of Paraná. Samples were taken in the Floresta Estadual do Palmito, from February 2014 through January 2015, using insect nets and traps for fruit-feeding butterfly species. A total of 200 species were recorded, in the families Hesperiidae (77), Nymphalidae (73), Riodinidae (20), Lycaenidae (19), Pieridae (7) and Papilionidae (4). Particularly notable records included the rare and vulnerable Pseudotinea hemis (Schaus, 1927), representing the lowest elevation record for this species, and Temenis huebneri korallion Fruhstorfer, 1912, a new record for Paraná. These results reinforce the need to direct sampling efforts to poorly inventoried areas, to increase knowledge of the distribution and occurrence patterns of butterflies in Brazil. Key words: Atlantic Forest, Biodiversity, conservation, inventory, species richness. INTRODUCTION the importance of inventories to knowledge of the fauna and its conservation, the present study inventoried the species of Faunal inventories are important for providing knowledge butterflies of the Floresta Estadual do Palmito. -
A Report of Candida Blankii Fungemia and Possible Endocarditis in an Immunocompetent Individual and the Review of Literature
Open Access Case Report DOI: 10.7759/cureus.14945 A Report of Candida blankii Fungemia and Possible Endocarditis in an Immunocompetent Individual and the Review of Literature Vidya S. Kollu 1 , Pramod K. Kalagara 2 , Shehla Islam 3 , Asmita Gupte 3 1. Department of Infectious Diseases and Global Medicine, College of Medicine, University of Florida, Gainesville, USA 2. Department of Hospital Medicine, Covenant Healthcare, Saginaw, USA 3. Division of Infectious Diseases, Veterans Affairs Medical Center, Gainesville, USA Corresponding author: Vidya S. Kollu, [email protected] Abstract Candida blankii is an emerging pathogenic fungus, first identified in 1968 as a new species. In the past five years, it has been identified in cystic fibrosis patient's airways and as fungemia in immunocompromised patients (post lung transplant and preterm neonates). It has been postulated to be a possible opportunistic pathogen based on the published case reports. We report a case of C. blankii fungemia with possible endocarditis in an immunocompetent individual. To our knowledge, this is also the first case of C. blankii bloodstream infection reported in an adult patient (age > 18 years). The C. blankii isolate from our patient had high minimum inhibitory concentrations (MICs) to azoles similar to the published reports. There is a dearth of literature guiding the treatment of this organism, given the variable susceptibility pattern and lack of data. Here, we describe successful treatment of possible C. blankii endocarditis with a combination of polyene and echinocandin antifungal agents. Categories: Cardiology, Internal Medicine, Infectious Disease Keywords: candida blankii, fungal endocarditis, fungemia, antifungal resistance, antifungal duration Introduction C. blankii is an emerging fungal pathogen [1]. -
Biology of Fungi, Lecture 2: the Diversity of Fungi and Fungus-Like Organisms
Biology of Fungi, Lecture 2: The Diversity of Fungi and Fungus-Like Organisms Terms You Should Understand u ‘Fungus’ (pl., fungi) is a taxonomic term and does not refer to morphology u ‘Mold’ is a morphological term referring to a filamentous (multicellular) condition u ‘Mildew’ is a term that refers to a particular type of mold u ‘Yeast’ is a morphological term referring to a unicellular condition Special Lecture Notes on Fungal Taxonomy u Fungal taxonomy is constantly in flux u Not one taxonomic scheme will be agreed upon by all mycologists u Classical fungal taxonomy was based primarily upon morphological features u Contemporary fungal taxonomy is based upon phylogenetic relationships Fungi in a Broad Sense u Mycologists have traditionally studied a diverse number of organisms, many not true fungi, but fungal-like in their appearance, physiology, or life style u At one point, these fungal-like microbes included the Actinomycetes, due to their filamentous growth patterns, but today are known as Gram-positive bacteria u The types of organisms mycologists have traditionally studied are now divided based upon phylogenetic relationships u These relationships are: Q Kingdom Fungi - true fungi Q Kingdom Straminipila - “water molds” Q Kingdom Mycetozoa - “slime molds” u Kingdom Fungi (Mycota) Q Phylum: Chytridiomycota Q Phylum: Zygomycota Q Phylum: Glomeromycota Q Phylum: Ascomycota Q Phylum: Basidiomycota Q Form-Phylum: Deuteromycota (Fungi Imperfecti) Page 1 of 16 Biology of Fungi Lecture 2: Diversity of Fungi u Kingdom Straminiplia (Chromista) -
Insect-Mediated Nitrogen Dynamics in Decomposing Wood
Ecological Entomology (2015), 40 (Suppl. 1), 97–112 DOI: 10.1111/een.12176 INSECTS AND ECOSYSTEM SERVICES SPECIAL ISSUE Insect-mediated nitrogen dynamics in decomposing wood MICHAEL D. ULYSHEN USDA Forest Service, Athens, Georgia, U.S.A. Abstract. 1. Wood decomposition is characterised by complex and poorly understood nitrogen (N) dynamics with unclear implications for forest nutrient cycling and productivity. Wood-dwelling microbes have developed unique strategies for coping with the N limitations imposed by their substrate, including the translocation of N into wood by cord-forming fungi and the fixation of atmospheric nitrogen2 (N ) by bacteria and Archaea. 2. By accelerating the release of nutrients immobilised in fungal tissues and promoting N2 fixation by free-living and endosymbiotic prokaryotes, saproxylic insects have the potential to influence N dynamics in forests. 3. Prokaryotes capable of fixing N2 appear to be commonplace among wood-feeding insects, with published records from three orders (Blattodea, Coleoptera and Hymenoptera), 13 families, 33 genera and at least 60 species. These organisms appear to play a significant role in the N economies of their hosts and represent a widespread solution to surviving on a diet of wood. 4. While agricultural research has demonstrated the role that termites and other insects can play in enhancing crop yields, the importance of saproxylic insects to forest productivity remains unexplored. Key words. Arthropods, diazotroph, ecosystem services, Isoptera, mineralisation, saproxylic, symbiosis. Introduction the N-rich tissues of particular insect and fungal species. For example, Baker (1969) reported that Anobium punctatum (De Nitrogen (N) is the limiting nutrient in many systems (Vitousek Geer) developing in dry wood acquired 2.5 times the amount & Howarth, 1991; LeBauer & Treseder, 2008) and this is espe- of N provided by the wood itself. -
GRAS Notice for Pichia Kudriavzevii ASCUSDY21 for Use As a Direct Fed Microbial in Dairy Cattle
GRAS Notice for Pichia kudriavzevii ASCUSDY21 for Use as a Direct Fed Microbial in Dairy Cattle Prepared for: Division of Animal Feeds, (HFV-220) Center for Veterinary Medicine 7519 Standish Place Rockville, Maryland 20855 Submitted by: ASCUS Biosciences, Inc. 6450 Lusk Blvd Suite 209 San Diego, California 92121 GRAS Notice for Pichia kudriavzevii ASCUSDY21 for Use as a Direct Fed Microbial in Dairy Cattle TABLE OF CONTENTS PART 1 – SIGNED STATEMENTS AND CERTIFICATION ................................................................................... 9 1.1 Name and Address of Organization .............................................................................................. 9 1.2 Name of the Notified Substance ................................................................................................... 9 1.3 Intended Conditions of Use .......................................................................................................... 9 1.4 Statutory Basis for the Conclusion of GRAS Status ....................................................................... 9 1.5 Premarket Exception Status .......................................................................................................... 9 1.6 Availability of Information .......................................................................................................... 10 1.7 Freedom of Information Act, 5 U.S.C. 552 .................................................................................. 10 1.8 Certification ................................................................................................................................ -
OPTIMIZATION of FRUIT FLY (Drosophila Melanogaster) CULTURE MEDIA for HIGHER YIELD of OFFSPRING
OPTIMIZATION OF FRUIT FLY (Drosophila melanogaster) CULTURE MEDIA FOR HIGHER YIELD OF OFFSPRING By TEE SUI YEE A project report submitted to the Department of Biological Science Faculty of Science Universiti Tunku Abdul Rahman in partial fulfillment of the requirements for the degree of Bachelor of Science (Hons) Biotechnology May 2010 ABSTRACT OPTIMIZATION OF FRUIT FLY (Drosophila melanogaster) CULTURE MEDIA FOR HIGHER YIELD OF OFFSPRING Tee Sui Yee Drosophila melanogaster is one of the most widely used model organism in research on genetics and genome evolution. Mass culture of D. melanogaster is important to produce enough amounts of flies for research purposes. Various culture media have been formulated using simple and economic methods to produce large amounts of Drosophila. In this study, ten different culture media were formulated to culture inbred D. melanogaster and used as attractant to collect Kampar wild-type Drosophila species. Banana medium was used as the positive control medium and plain agar was used as the negative control medium. For inbred D. melanogaster, the number of pupal cases and hatched flies were calculated for two generations while only the number of pupal cases was calculated for wild-caught Drosophila species. The results were analyzed by using one-way ANOVA, Tukey’s HSD multiple range test and paired sample t- test. One-way ANOVA showed that there were significant differences (p≤ 0.05) in the numbers of inbred offspring and also the numbers of wild-caught Drosophila species among different culture media. For inbred D. melanogaster, the banana and egg medium managed to breed the highest number of offspring for both generations. -
Coleoptera, Carabidae)
A peer-reviewed open-access journal ZooKeys 416: 77–112Taxonomic (2014) review of Cratocerus Dejean, 1829 (Coleoptera, Carabidae)... 77 doi: 10.3897/zookeys.416.6455 RESEARCH ARTICLE www.zookeys.org Launched to accelerate biodiversity research Taxonomic review of Cratocerus Dejean, 1829 (Coleoptera, Carabidae) with the description of six new species Traci L. Grzymala1, Kipling W. Will1 1 ESPM Department and Essig Museum of Entomology, University of California, Berkeley, CA 94720 Corresponding author: Traci L. Grzymala ([email protected]) Academic editor: T. Erwin | Received 18 October 2013 | Accepted 12 May 2014 | Published 17 June 2014 http://zoobank.org/D81E3809-5704-4DE7-AFEC-098E7773D528 Citation: Grzymala TL, Will KW (2014) Taxonomic review of Cratocerus Dejean, 1829 (Coleoptera, Carabidae) with description of six new species. ZooKeys 416: 77–112. doi: 10.3897/zookeys.416.6455 Abstract A diagnosis of the South and Central American genus Cratocerus Dejean (Coleoptera: Carabidae) and a key to all species is provided. Eight species are recognized including six species that are newly described: Cratocerus sinesetosus sp. n. from French Guiana and Peru; Cratocerus multisetosus sp. n. from Costa Rica and Panama; Cratocerus tanyae sp. n. from Costa Rica, Guatemala, and Mexico; Cratocerus indupalmensis sp. n. a species widely distributed throughout Central and South America; Cratocerus kavanaughi sp. n. from French Guiana and Peru; and Cratocerus culpepperi sp. n. from Peru. A lectotype for Cratocerus sulcatus Chaudoir is designated. Habitus images are provided along with illustrations and images of male genitalia, female genitalia, and diagnostic morphological characters. Keywords Pterostichinae, Harpalinae, Cratocerini, Cratocerina, revision, key Introduction The genus Cratocerus (Coleoptera: Carabidae) was originally described by Dejean (1829) based on two specimens collected from Brazil.