6. References
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Specifications of Approved Drug Compound Library
Annexure-I : Specifications of Approved drug compound library The compounds should be structurally diverse, medicinally active, and cell permeable Compounds should have rich documentation with structure, Target, Activity and IC50 should be known Compounds which are supplied should have been validated by NMR and HPLC to ensure high purity Each compound should be supplied as 10mM solution in DMSO and at least 100µl of each compound should be supplied. Compounds should be supplied in screw capped vial arranged as 96 well plate format. -
COVID-19—The Potential Beneficial Therapeutic Effects of Spironolactone During SARS-Cov-2 Infection
pharmaceuticals Review COVID-19—The Potential Beneficial Therapeutic Effects of Spironolactone during SARS-CoV-2 Infection Katarzyna Kotfis 1,* , Kacper Lechowicz 1 , Sylwester Drozd˙ zal˙ 2 , Paulina Nied´zwiedzka-Rystwej 3 , Tomasz K. Wojdacz 4, Ewelina Grywalska 5 , Jowita Biernawska 6, Magda Wi´sniewska 7 and Miłosz Parczewski 8 1 Department of Anesthesiology, Intensive Therapy and Acute Intoxications, Pomeranian Medical University in Szczecin, 70-111 Szczecin, Poland; [email protected] 2 Department of Pharmacokinetics and Monitored Therapy, Pomeranian Medical University, 70-111 Szczecin, Poland; [email protected] 3 Institute of Biology, University of Szczecin, 71-412 Szczecin, Poland; [email protected] 4 Independent Clinical Epigenetics Laboratory, Pomeranian Medical University, 71-252 Szczecin, Poland; [email protected] 5 Department of Clinical Immunology and Immunotherapy, Medical University of Lublin, 20-093 Lublin, Poland; [email protected] 6 Department of Anesthesiology and Intensive Therapy, Pomeranian Medical University in Szczecin, 71-252 Szczecin, Poland; [email protected] 7 Clinical Department of Nephrology, Transplantology and Internal Medicine, Pomeranian Medical University, 70-111 Szczecin, Poland; [email protected] 8 Department of Infectious, Tropical Diseases and Immune Deficiency, Pomeranian Medical University in Szczecin, 71-455 Szczecin, Poland; [email protected] * Correspondence: katarzyna.kotfi[email protected]; Tel.: +48-91-466-11-44 Abstract: In March 2020, coronavirus disease 2019 (COVID-19) caused by SARS-CoV-2 was declared Citation: Kotfis, K.; Lechowicz, K.; a global pandemic by the World Health Organization (WHO). The clinical course of the disease is Drozd˙ zal,˙ S.; Nied´zwiedzka-Rystwej, unpredictable but may lead to severe acute respiratory infection (SARI) and pneumonia leading to P.; Wojdacz, T.K.; Grywalska, E.; acute respiratory distress syndrome (ARDS). -
ECO-Ssls for Pahs
Ecological Soil Screening Levels for Polycyclic Aromatic Hydrocarbons (PAHs) Interim Final OSWER Directive 9285.7-78 U.S. Environmental Protection Agency Office of Solid Waste and Emergency Response 1200 Pennsylvania Avenue, N.W. Washington, DC 20460 June 2007 This page intentionally left blank TABLE OF CONTENTS 1.0 INTRODUCTION .......................................................1 2.0 SUMMARY OF ECO-SSLs FOR PAHs......................................1 3.0 ECO-SSL FOR TERRESTRIAL PLANTS....................................4 5.0 ECO-SSL FOR AVIAN WILDLIFE.........................................8 6.0 ECO-SSL FOR MAMMALIAN WILDLIFE..................................8 6.1 Mammalian TRV ...................................................8 6.2 Estimation of Dose and Calculation of the Eco-SSL ........................9 7.0 REFERENCES .........................................................16 7.1 General PAH References ............................................16 7.2 References Used for Derivation of Plant and Soil Invertebrate Eco-SSLs ......17 7.3 References Rejected for Use in Derivation of Plant and Soil Invertebrate Eco-SSLs ...............................................................18 7.4 References Used in Derivation of Wildlife TRVs .........................25 7.5 References Rejected for Use in Derivation of Wildlife TRV ................28 i LIST OF TABLES Table 2.1 PAH Eco-SSLs (mg/kg dry weight in soil) ..............................4 Table 3.1 Plant Toxicity Data - PAHs ..........................................5 Table 4.1 -
Biosynthesis and Secretion of the Microbial Sulfated Peptide Raxx and Binding to the Rice XA21 Immune Receptor
Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor Dee Dee Luua,b,1, Anna Joea,b,c,1, Yan Chend, Katarzyna Paryse, Ofir Bahara,b,2, Rory Pruitta,b,3, Leanne Jade G. Chand, Christopher J. Petzoldd, Kelsey Longa,b, Clifford Adamchaka,b, Valley Stewartf, Youssef Belkhadire, and Pamela C. Ronalda,b,c,4 aDepartment of Plant Pathology, University of California, Davis, CA 95616; bThe Genome Center, University of California, Davis, CA 95616; cFeedstocks Division, Joint Bioenergy Institute, Emeryville, CA 94608; dTechnology Division, Joint Bioenergy Institute, Emeryville, CA 94608; eGregor Mendel Institute, Austrian Academy of Sciences, 1030 Vienna, Austria; and fDepartment of Microbiology & Molecular Genetics, University of California, Davis, CA 95616 Edited by Jonathan D. G. Jones, The Sainsbury Laboratory, Norwich, United Kingdom, and approved March 7, 2019 (received for review October 24, 2018) The rice immune receptor XA21 is activated by the sulfated micro- to Xoo strains lacking RaxX (7–10). Xoo strains lacking RaxX are bial peptide required for activation of XA21-mediated immunity X also compromised in virulence of rice plants lacking XA21 (10). (RaxX) produced by Xanthomonas oryzae pv. oryzae (Xoo). Muta- These results suggest a role for RaxX in bacterial virulence. tional studies and targeted proteomics revealed that the RaxX pre- Tyrosine sulfated RaxX16, a 16-residue synthetic peptide de- cursor peptide (proRaxX) is processed and secreted by the protease/ rived from residues 40–55 of the 60-residue RaxX precursor transporter RaxB, the function of which can be partially fulfilled by peptide (proRaxX), is the shortest characterized immunogenic a noncognate peptidase-containing transporter component B derivative of RaxX (10). -
NDA/BLA Multi-Disciplinary Review and Evaluation
NDA/BLA Multi-disciplinary Review and Evaluation NDA 214154 Nextstellis (drospirenone and estetrol tablets) NDA/BLA Multi-Disciplinary Review and Evaluation Application Type NDA Application Number(s) NDA 214154 (IND 110682) Priority or Standard Standard Submit Date(s) April 15, 2020 Received Date(s) April 15, 2020 PDUFA Goal Date April 15, 2021 Division/Office Division of Urology, Obstetrics, and Gynecology (DUOG) / Office of Rare Diseases, Pediatrics, Urologic and Reproductive Medicine (ORPURM) Review Completion Date April 15, 2021 Established/Proper Name drospirenone and estetrol tablets (Proposed) Trade Name Nextstellis Pharmacologic Class Combination hormonal contraceptive Applicant Mayne Pharma LLC Dosage form Tablet Applicant proposed Dosing x Take one tablet by mouth at the same time every day. Regimen x Take tablets in the order directed on the blister pack. Applicant Proposed For use by females of reproductive potential to prevent Indication(s)/Population(s) pregnancy Recommendation on Approval Regulatory Action Recommended For use by females of reproductive potential to prevent Indication(s)/Population(s) pregnancy (if applicable) Recommended Dosing x Take one pink tablet (drospirenone 3 mg, estetrol Regimen anhydrous 14.2 mg) by mouth at the same time every day for 24 days x Take one white inert tablet (placebo) by mouth at the same time every day for 4 days following the pink tablets x Take tablets in the order directed on the blister pack 1 Reference ID: 4778993 NDA/BLA Multi-disciplinary Review and Evaluation NDA 214154 Nextstellis (drospirenone and estetrol tablets) Table of Contents Table of Tables .................................................................................................................... 5 Table of Figures ................................................................................................................... 7 Reviewers of Multi-Disciplinary Review and Evaluation ................................................... -
Biotransformation: Basic Concepts (1)
Chapter 5 Absorption, Distribution, Metabolism, and Elimination of Toxics Biotransformation: Basic Concepts (1) • Renal excretion of chemicals Biotransformation: Basic Concepts (2) • Biological basis for xenobiotic metabolism: – To convert lipid-soluble, non-polar, non-excretable forms of chemicals to water-soluble, polar forms that are excretable in bile and urine. – The transformation process may take place as a result of the interaction of the toxic substance with enzymes found primarily in the cell endoplasmic reticulum, cytoplasm, and mitochondria. – The liver is the primary organ where biotransformation occurs. Biotransformation: Basic Concepts (3) Biotransformation: Basic Concepts (4) • Interaction with these enzymes may change the toxicant to either a less or a more toxic form. • Generally, biotransformation occurs in two phases. – Phase I involves catabolic reactions that break down the toxicant into various components. • Catabolic reactions include oxidation, reduction, and hydrolysis. – Oxidation occurs when a molecule combines with oxygen, loses hydrogen, or loses one or more electrons. – Reduction occurs when a molecule combines with hydrogen, loses oxygen, or gains one or more electrons. – Hydrolysis is the process in which a chemical compound is split into smaller molecules by reacting with water. • In most cases these reactions make the chemical less toxic, more water soluble, and easier to excrete. Biotransformation: Basic Concepts (5) – Phase II reactions involves the binding of molecules to either the original toxic molecule or the toxic molecule metabolite derived from the Phase I reactions. The final product is usually water soluble and, therefore, easier to excrete from the body. • Phase II reactions include glucuronidation, sulfation, acetylation, methylation, conjugation with glutathione, and conjugation with amino acids (such as glycine, taurine, and glutamic acid). -
A Novel Method for Site-Determination of Tyrosine O- Sulfation in Peptides and Proteins
A novel method for site-determination of tyrosine O- sulfation in peptides and proteins Yonghao Yu Genome Center, Depts of Chemistry and Molecular Cell Biology, University of California, Davis, CA, 95616 and Dept of Chemistry, University of California, Berkeley, CA, 94720, current address: Dept of Cell Biology, Harvard Medical School, Boston, MA 02115 Adam J. Hoffhines Department of Cell Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104 Kevin L. Moore Cardiovascular Biology Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK 73104 Julie A. Leary Genome Center, Departments of Chemistry and Molecular Cell Biology, University of California, Davis, CA, 95616 Method Article Keywords: tyrosine sulfation, mass spectrometry, post-translational modication, protein-protein interaction, extracelluar matrix, proteomics Posted Date: September 20th, 2007 DOI: https://doi.org/10.1038/nprot.2007.388 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/12 Abstract Introduction Tyrosine O-sulfation is one of many posttranslational modications described in nature that can impart critical functional properties to proteins that are independent of the genes encoding them1, 2. It plays a key role in regulating protein-protein interactions in the extracellular space3 and is catalyzed by two closely related Golgi enzymes called tyrosylprotein sulfotransferases \(TPST-1 and TPST–2)4, 5. In this protocol, we describe a novel subtractive strategy to determine the sites of tyrosine sulfation in peptides and proteins6. Hydroxyl groups on unsulfated tyrosines are stoichiometrically acetylated by a one-step reaction using sulfosuccinimidyl acetate in the presence of imidazole at pH 7.0. -
Tyrosine Sulfation: a Modulator of Extracellular Protein–Protein Interactions Provided by Elsevier - Publisher Connector John W Kehoe1 and Carolyn R Bertozzi1,2
cm7309.qxd 03/10/2000 11:46 Page R57 CORE Minireview R57 brought to you by Elsevier - Publisher Connector Tyrosine sulfation: a modulator of extracellular protein–protein interactions provided by John W Kehoe1 and Carolyn R Bertozzi1,2 Tyrosine sulfation is a post-translational modification of P-selectin on activated endothelial cells with the many secreted and membrane-bound proteins. Its P-selectin glycoprotein ligand (PSGL)-1 on cognate biological roles have been unclear. Recent work has leukocytes [3]. PSGL-1 was identified at the molecular implicated tyrosine sulfate as a determinant of level in 1993, using expression cloning [4]. Glycosylation protein–protein interactions involved in leukocyte of PSGL-1 was known to be a major determinant of adhesion, hemostasis and chemokine signaling. P-selectin binding, but was not sufficient to explain the binding avidities observed in vivo. Addresses: Departments of 1Molecular and Cell Biology and 2 Chemistry, University of California, Berkeley, CA 94720, USA. Further investigations revealed that tyrosine sulfation near Correspondence: Carolyn R Bertozzi the amino terminus of PSGL-1 plays an essential role in E-mail: [email protected] P-selectin binding (shown schematically in Figure 1b). Three papers published within one month of each other in Chemistry & Biology 2000, 7:R57–R61 1995 provided the first evidence of this phenomenon 1074-5521/00/$ – see front matter [5–7]. Progressive deletions of the PSGL-1 amino termi- © 2000 Elsevier Science Ltd. All rights reserved. nus by Pouyani and Seed [5] revealed that a 20-residue peptide was required for high-affinity binding. Further- The study of living systems has been transformed by an more, mutagenesis within this sequence showed that the explosion of genetic information. -
Mineralocorticoid Receptor Antagonists for Heart Failure with Reduced Ejection Fraction: Integrating Evidence Into Clinical Practice
European Heart Journal Advance Access published August 31, 2012 European Heart Journal REVIEW doi:10.1093/eurheartj/ehs257 Novel Therapeutic Concepts Mineralocorticoid receptor antagonists for heart failure with reduced ejection fraction: integrating evidence into clinical practice Faiez Zannad1*, Wendy Gattis Stough2,PatrickRossignol1, Johann Bauersachs3, John J.V. McMurray4,KarlSwedberg5,AllanD.Struthers6, Adriaan A. Voors7, Luis M. Ruilope8,GeorgeL.Bakris9, Christopher M. O’Connor10, Mihai Gheorghiade11, Downloaded from Robert J. Mentz10, Alain Cohen-Solal12,AldoP.Maggioni13, Farzin Beygui14, Gerasimos S. Filippatos15,ZiadA.Massy16, Atul Pathak17, Ileana L. Pin˜a18, Hani N. Sabbah19, Domenic A. Sica20, Luigi Tavazzi21, and Bertram Pitt22 http://eurheartj.oxfordjournals.org/ 1INSERM, Centre d’Investigation Clinique 9501 and Unite´ 961, Centre Hospitalier Universitaire, and the Department of Cardiology, Nancy University, Universite´ de Lorraine, Nancy, France; 2Campbell University College of Pharmacy and Health Sciences, Buies Creek, NC, USA; 3Department of Cardiology and Angiology, Hannover Medical School, Hannover, Germany; 4Western Infirmary and the British Heart Foundation, Glasgow Cardiovascular Research Centre, University of Glasgow, Glasgow, UK; 5Department of Molecular and Clinical Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden; 6University of Dundee, Ninewells Hospital and Medical School, Dundee, UK; 7University Medical Center Groningen, University of Groningen, Groningen, The Netherlands; 8Hypertension -
NST110: Advanced Toxicology Lecture 4: Phase I Metabolism
Absorption, Distribution, Metabolism and Excretion (ADME): NST110: Advanced Toxicology Lecture 4: Phase I Metabolism NST110, Toxicology Department of Nutritional Sciences and Toxicology University of California, Berkeley Biotransformation The elimination of xenobiotics often depends on their conversion to water-soluble chemicals through biotransformation, catalyzed by multiple enzymes primarily in the liver with contributions from other tissues. Biotransformation changes the properties of a xenobiotic usually from a lipophilic form (that favors absorption) to a hydrophilic form (favoring excretion in the urine or bile). The main evolutionary goal of biotransformation is to increase the rate of excretion of xenobiotics or drugs. Biotransformation can detoxify or bioactivate xenobiotics to more toxic forms that can cause tumorigenicity or other toxicity. Phase I and Phase II Biotransformation Reactions catalyzed by xenobiotic biotransforming enzymes are generally divided into two groups: Phase I and phase II. 1. Phase I reactions involve hydrolysis, reduction and oxidation, exposing or introducing a functional group (-OH, -NH2, -SH or –COOH) to increase reactivity and slightly increase hydrophilicity. O R1 - O S O sulfation O R2 OH Phase II Phase I R1 R2 R1 R2 - hydroxylation COO R1 O O glucuronidation OH R2 HO excretion OH O COO- HN H -NH2 R R1 R1 S N 1 Phase I Phase II COO O O oxidation glutathione R2 OH R2 R2 conjugation 2. Phase II reactions include glucuronidation, sulfation, acetylation, methylation, conjugation with glutathione, and conjugation with amino acids (glycine, taurine and glutamic acid) that strongly increase hydrophilicity. Phase I and II Biotransformation • With the exception of lipid storage sites and the MDR transporter system, organisms have little anatomical defense against lipid soluble toxins. -
Serves As High-Affinity Substrate for Tyrosylprotein Sulfotransferase
Proc. Nati. Acad. Sci. USA Vol. 82, pp. 6143-6147, September 1985 Cell Biology (Glu62,Ala30,Tyr8). serves as high-affinity substrate for tyrosylprotein sulfotransferase: A Golgi enzyme (tyrosine sulfation/protein sorting/chromaffin granules/tyrosine phosphorylation/tubulin) RAYMOND W. H. LEE AND WIELAND B. HUTTNER* Department of Neurochemistry, Max-Planck-Institute for Psychiatry, 8033 Martinsried, Federal Republic of Germany Communicated by Fritz Lipmann, May 10, 1985 ABSTRACT Tyrosylprotein sulfotransferase, the enzyme as substrate are as follows: (i) the only sulfatable hydroxyl catalyzing the sulfation of proteins on tyrosine residues, was group in Glu,Ala,Tyr is on tyrosine, in contrast to physio- characterized by using the acidic polymer containing tyrosine logical protein substrates, which may also contain sulfatable (Glu62,Ala3',Tyr8). (referred to as Glu,Ala,Tyr) as exogenous carbohydrate, serine, and threonine residues; (ii) "protein" substrate. After subcellular fractionation ofa bovine Glu,Ala,Tyr is available in completely unsulfated form in adrenal medulla homogenate, tyrosylprotein sulfotransferase sufficient quantities for enzymological studies, whereas activity was found to be highest in fractions enriched in Golgi physiologically sulfated proteins purified from bi6logical membrane vesicles. Tyrosylprotein sulfotransferase required sources need to be desulfated before being used as sub- the presence of a nonionic detergent for sulfation of exogenous strates; (iii) Glu,Ala,Tyr is likely to contain tyrosine residues Glu,Ala,Tyr, indicating an orientation of the catalytic site of in the vicinity ofacidic amino acid residues. A comparison of the enzyme toward the Golgi lumen. Tyrosylprotein the amino acid sequences surrounding the sulfated tyrosine sulfotransferase was solubilized by Triton X-100, suggesting residues in gastrin (10), cholecystokinin (11), fibrinopeptide that the enzyme was tightly associated with the Golgi mem- B (12), and hirudin (13) shows that these sequences always brane, possibly as an integral membrane protein. -
Estrogen Metabolism: Are We Assessing It Properly? Filomena Trindade, MD, MPH
Estrogen Metabolism: Are We Assessing It Properly? Filomena Trindade, MD, MPH The views and opinions expressed herein are solely those of the presenter and do not necessarily represent those of Genova Diagnostics. Thus, Genova Diagnostics does not accept liability for consequences of any actions taken on the basis of the information provided. Michael Chapman, ND Medical Education Specialist - Asheville Filomena Trindade, MD, MPH Technical Issues & Clinical Questions Please type any technical issue or clinical question into either the “Chat” or “Questions” boxes, making sure to send them to “Organizer” at any time during the webinar. We will be compiling your clinical questions and answering as many as we can the final 15 minutes of the webinar. DISCLAIMER: Please note that any and all emails provided may be used for follow up correspondence and/or for further communication. Estrogen Metabolism: Are We Assessing It Properly? Filomena Trindade, MD, MPH The views and opinions expressed herein are solely those of the presenter and do not necessarily represent those of Genova Diagnostics. Thus, Genova Diagnostics does not accept liability for consequences of any actions taken on the basis of the information provided. Objectives • Understand the importance of estrogen metabolism with respect to cancer risk • Be able to devise a treatment plan for a pt with an unfavorable estrogen metabolism profile • Gain a basic understanding of the importance of methylation in estrogen metabolism, health promotion and cancer prevention • Learn to apply these