Online Machine Learning in Big Data Streams
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Data Mining – Intro
Data warehouse& Data Mining UNIT-3 Syllabus • UNIT 3 • Classification: Introduction, decision tree, tree induction algorithm – split algorithm based on information theory, split algorithm based on Gini index; naïve Bayes method; estimating predictive accuracy of classification method; classification software, software for association rule mining; case study; KDD Insurance Risk Assessment What is Data Mining? • Data Mining is: (1) The efficient discovery of previously unknown, valid, potentially useful, understandable patterns in large datasets (2) Data mining is the analysis step of the "knowledge discovery in databases" process, or KDD (2) The analysis of (often large) observational data sets to find unsuspected relationships and to summarize the data in novel ways that are both understandable and useful to the data owner Knowledge Discovery Examples of Large Datasets • Government: IRS, NGA, … • Large corporations • WALMART: 20M transactions per day • MOBIL: 100 TB geological databases • AT&T 300 M calls per day • Credit card companies • Scientific • NASA, EOS project: 50 GB per hour • Environmental datasets KDD The Knowledge Discovery in Databases (KDD) process is commonly defined with the stages: (1) Selection (2) Pre-processing (3) Transformation (4) Data Mining (5) Interpretation/Evaluation Data Mining Methods 1. Decision Tree Classifiers: Used for modeling, classification 2. Association Rules: Used to find associations between sets of attributes 3. Sequential patterns: Used to find temporal associations in time series 4. Hierarchical -
Package 'Sparkxgb'
Package ‘sparkxgb’ February 23, 2021 Type Package Title Interface for 'XGBoost' on 'Apache Spark' Version 0.1.1 Maintainer Yitao Li <[email protected]> Description A 'sparklyr' <https://spark.rstudio.com/> extension that provides an R interface for 'XGBoost' <https://github.com/dmlc/xgboost> on 'Apache Spark'. 'XGBoost' is an optimized distributed gradient boosting library. License Apache License (>= 2.0) Encoding UTF-8 LazyData true Depends R (>= 3.1.2) Imports sparklyr (>= 1.3), forge (>= 0.1.9005) RoxygenNote 7.1.1 Suggests dplyr, purrr, rlang, testthat NeedsCompilation no Author Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>), Yitao Li [aut, cre] (<https://orcid.org/0000-0002-1261-905X>) Repository CRAN Date/Publication 2021-02-23 10:20:02 UTC R topics documented: xgboost_classifier . .2 xgboost_regressor . .6 Index 11 1 2 xgboost_classifier xgboost_classifier XGBoost Classifier Description XGBoost classifier for Spark. Usage xgboost_classifier( x, formula = NULL, eta = 0.3, gamma = 0, max_depth = 6, min_child_weight = 1, max_delta_step = 0, grow_policy = "depthwise", max_bins = 16, subsample = 1, colsample_bytree = 1, colsample_bylevel = 1, lambda = 1, alpha = 0, tree_method = "auto", sketch_eps = 0.03, scale_pos_weight = 1, sample_type = "uniform", normalize_type = "tree", rate_drop = 0, skip_drop = 0, lambda_bias = 0, tree_limit = 0, num_round = 1, num_workers = 1, nthread = 1, use_external_memory = FALSE, silent = 0, custom_obj = NULL, custom_eval = NULL, missing = NaN, seed = 0, timeout_request_workers = 30 * 60 * 1000, -
Benchmarking and Optimization of Gradient Boosting Decision Tree Algorithms
Benchmarking and Optimization of Gradient Boosting Decision Tree Algorithms Andreea Anghel, Nikolaos Papandreou, Thomas Parnell Alessandro de Palma, Haralampos Pozidis IBM Research – Zurich, Rüschlikon, Switzerland {aan,npo,tpa,les,hap}@zurich.ibm.com Abstract Gradient boosting decision trees (GBDTs) have seen widespread adoption in academia, industry and competitive data science due to their state-of-the-art perfor- mance in many machine learning tasks. One relative downside to these models is the large number of hyper-parameters that they expose to the end-user. To max- imize the predictive power of GBDT models, one must either manually tune the hyper-parameters, or utilize automated techniques such as those based on Bayesian optimization. Both of these approaches are time-consuming since they involve repeatably training the model for different sets of hyper-parameters. A number of software GBDT packages have started to offer GPU acceleration which can help to alleviate this problem. In this paper, we consider three such packages: XG- Boost, LightGBM and Catboost. Firstly, we evaluate the performance of the GPU acceleration provided by these packages using large-scale datasets with varying shapes, sparsities and learning tasks. Then, we compare the packages in the con- text of hyper-parameter optimization, both in terms of how quickly each package converges to a good validation score, and in terms of generalization performance. 1 Introduction Many powerful techniques in machine learning construct a strong learner from a number of weak learners. Bagging combines the predictions of the weak learners, each using a different bootstrap sample of the training data set [1]. Boosting, an alternative approach, iteratively trains a sequence of weak learners, whereby the training examples for the next learner are weighted according to the success of the previously-constructed learners. -
Xgboost: a Scalable Tree Boosting System
XGBoost: A Scalable Tree Boosting System Tianqi Chen Carlos Guestrin University of Washington University of Washington [email protected] [email protected] ABSTRACT problems. Besides being used as a stand-alone predictor, it Tree boosting is a highly effective and widely used machine is also incorporated into real-world production pipelines for learning method. In this paper, we describe a scalable end- ad click through rate prediction [15]. Finally, it is the de- to-end tree boosting system called XGBoost, which is used facto choice of ensemble method and is used in challenges widely by data scientists to achieve state-of-the-art results such as the Netflix prize [3]. on many machine learning challenges. We propose a novel In this paper, we describe XGBoost, a scalable machine learning system for tree boosting. The system is available sparsity-aware algorithm for sparse data and weighted quan- 2 tile sketch for approximate tree learning. More importantly, as an open source package . The impact of the system has we provide insights on cache access patterns, data compres- been widely recognized in a number of machine learning and sion and sharding to build a scalable tree boosting system. data mining challenges. Take the challenges hosted by the machine learning competition site Kaggle for example. A- By combining these insights, XGBoost scales beyond billions 3 of examples using far fewer resources than existing systems. mong the 29 challenge winning solutions published at Kag- gle's blog during 2015, 17 solutions used XGBoost. Among these solutions, eight solely used XGBoost to train the mod- Keywords el, while most others combined XGBoost with neural net- Large-scale Machine Learning s in ensembles. -
Release 1.0.2 Xgboost Developers
xgboost Release 1.0.2 xgboost developers Apr 15, 2020 CONTENTS 1 Contents 3 1.1 Installation Guide............................................3 1.2 Get Started with XGBoost........................................ 11 1.3 XGBoost Tutorials............................................ 12 1.4 Frequently Asked Questions....................................... 49 1.5 XGBoost GPU Support......................................... 50 1.6 XGBoost Parameters........................................... 55 1.7 XGBoost Python Package........................................ 65 1.8 XGBoost R Package........................................... 113 1.9 XGBoost JVM Package......................................... 127 1.10 XGBoost.jl................................................ 144 1.11 XGBoost C Package........................................... 144 1.12 XGBoost C++ API............................................ 145 1.13 XGBoost Command Line version.................................... 145 1.14 Contribute to XGBoost.......................................... 145 Python Module Index 155 Index 157 i ii xgboost, Release 1.0.2 XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable. It implements machine learning algorithms under the Gradient Boosting framework. XGBoost provides a parallel tree boosting (also known as GBDT, GBM) that solve many data science problems in a fast and accurate way. The same code runs on major distributed environment (Hadoop, SGE, MPI) and can solve problems beyond billions -
Lightgbm Release 3.2.1.99
LightGBM Release 3.2.1.99 Microsoft Corporation Sep 26, 2021 CONTENTS: 1 Installation Guide 3 2 Quick Start 21 3 Python-package Introduction 23 4 Features 29 5 Experiments 37 6 Parameters 43 7 Parameters Tuning 65 8 C API 71 9 Python API 99 10 Distributed Learning Guide 175 11 LightGBM GPU Tutorial 185 12 Advanced Topics 189 13 LightGBM FAQ 191 14 Development Guide 199 15 GPU Tuning Guide and Performance Comparison 201 16 GPU SDK Correspondence and Device Targeting Table 205 17 GPU Windows Compilation 209 18 Recommendations When Using gcc 229 19 Documentation 231 20 Indices and Tables 233 Index 235 i ii LightGBM, Release 3.2.1.99 LightGBM is a gradient boosting framework that uses tree based learning algorithms. It is designed to be distributed and efficient with the following advantages: • Faster training speed and higher efficiency. • Lower memory usage. • Better accuracy. • Support of parallel, distributed, and GPU learning. • Capable of handling large-scale data. For more details, please refer to Features. CONTENTS: 1 LightGBM, Release 3.2.1.99 2 CONTENTS: CHAPTER ONE INSTALLATION GUIDE This is a guide for building the LightGBM Command Line Interface (CLI). If you want to build the Python-package or R-package please refer to Python-package and R-package folders respectively. All instructions below are aimed at compiling the 64-bit version of LightGBM. It is worth compiling the 32-bit version only in very rare special cases involving environmental limitations. The 32-bit version is slow and untested, so use it at your own risk and don’t forget to adjust some of the commands below when installing. -
Frequent Item Set Mining Using INC MINE in Massive Online Analysis Frame Work
Available online at www.sciencedirect.com ScienceDirect Procedia Computer Science 45 ( 2015 ) 133 – 142 International Conference on Advanced Computing Technologies and Applications (ICACTA- 2015) Frequent Item set Mining using INC_MINE in Massive Online Analysis Frame work Prof.Dr.P.K.Srimania, Mrs. Malini M. Patilb* aFormer Chairman and Director, R & D, Bangalore University, Karnataka, India bAssistant Professor , Dept of ISE , J.S.S. Academy of Technical Education, Bangalore-560060, Karnataka, India Research Scholar, Bharthiar University, Coimbatore, Tamilnadu Abstract Frequent Pattern Mining is one of the major data mining techniques, which is exhaustively studied in the past decade. The technological advancements have resulted in huge data generation, having increased rate of data distribution. The generated data is called as a 'data stream'. Data streams can be mined only by using sophisticated techniques. The paper aims at carrying out frequent pattern mining on data streams. Stream mining has great challenges due to high memory usage and computational costs. Massive online analysis frame work is a software environment used to perform frequent pattern mining using INC_MINE algorithm. The algorithm uses the method of closed frequent mining. The data sets used in the analysis are Electricity data set and Airline data set. The authors also generated their own data set, OUR-GENERATOR for the purpose of analysis and the results are found interesting. In the experiments five samples of instance sizes (10000, 15000, 25000, 35000, 50000) are used with varying minimum support and window sizes for determining frequent closed itemsets and semi frequent closed itemsets respectively. The present work establishes that association rule mining could be performed even in the case of data stream mining by INC_MINE algorithm by generating closed frequent itemsets which is first of its kind in the literature. -
Performance Analysis of Hoeffding Trees in Data Streams by Using Massive Online Analysis Framework
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by ePrints@Bangalore University Int. J. Data Mining, Modelling and Management, Vol. 7, No. 4, 2015 293 Performance analysis of Hoeffding trees in data streams by using massive online analysis framework P.K. Srimani R & D Division, Bangalore University Jnana Bharathi, Mysore Road, Bangalore-560056, Karnataka, India Email: [email protected] Malini M. Patil* Department of Information Science and Engineering, J.S.S. Academy of Technical Education, Uttaralli-Kengeri Main Road, Mylasandra, Bangalore-560060, Karnataka, India Email: [email protected] *Corresponding author Abstract: Present work is mainly concerned with the understanding of the problem of classification from the data stream perspective on evolving streams using massive online analysis framework with regard to different Hoeffding trees. Advancement of the technology both in the area of hardware and software has led to the rapid storage of data in huge volumes. Such data is referred to as a data stream. Traditional data mining methods are not capable of handling data streams because of the ubiquitous nature of data streams. The challenging task is how to store, analyse and visualise such large volumes of data. Massive data mining is a solution for these challenges. In the present analysis five different Hoeffding trees are used on the available eight dataset generators of massive online analysis framework and the results predict that stagger generator happens to be the best performer for different classifiers. Keywords: data mining; data streams; static streams; evolving streams; Hoeffding trees; classification; supervised learning; massive online analysis; MOA; framework; massive data mining; MDM; dataset generators. -
Enhanced Prediction of Hot Spots at Protein-Protein Interfaces Using Extreme Gradient Boosting
www.nature.com/scientificreports OPEN Enhanced Prediction of Hot Spots at Protein-Protein Interfaces Using Extreme Gradient Boosting Received: 5 June 2018 Hao Wang, Chuyao Liu & Lei Deng Accepted: 10 September 2018 Identifcation of hot spots, a small portion of protein-protein interface residues that contribute the Published: xx xx xxxx majority of the binding free energy, can provide crucial information for understanding the function of proteins and studying their interactions. Based on our previous method (PredHS), we propose a new computational approach, PredHS2, that can further improve the accuracy of predicting hot spots at protein-protein interfaces. Firstly we build a new training dataset of 313 alanine-mutated interface residues extracted from 34 protein complexes. Then we generate a wide variety of 600 sequence, structure, exposure and energy features, together with Euclidean and Voronoi neighborhood properties. To remove redundant and irrelevant information, we select a set of 26 optimal features utilizing a two-step feature selection method, which consist of a minimum Redundancy Maximum Relevance (mRMR) procedure and a sequential forward selection process. Based on the selected 26 features, we use Extreme Gradient Boosting (XGBoost) to build our prediction model. Performance of our PredHS2 approach outperforms other machine learning algorithms and other state-of-the-art hot spot prediction methods on the training dataset and the independent test set (BID) respectively. Several novel features, such as solvent exposure characteristics, second structure features and disorder scores, are found to be more efective in discriminating hot spots. Moreover, the update of the training dataset and the new feature selection and classifcation algorithms play a vital role in improving the prediction quality. -
Massive Online Analysis, a Framework for Stream Classification and Clustering
MOA: Massive Online Analysis, a Framework for Stream Classification and Clustering. Albert Bifet1, Geoff Holmes1, Bernhard Pfahringer1, Philipp Kranen2, Hardy Kremer2, Timm Jansen2, and Thomas Seidl2 1 Department of Computer Science, University of Waikato, Hamilton, New Zealand fabifet, geoff, [email protected] 2 Data Management and Exploration Group, RWTH Aachen University, Germany fkranen, kremer, jansen, [email protected] Abstract. In today's applications, massive, evolving data streams are ubiquitous. Massive Online Analysis (MOA) is a software environment for implementing algorithms and running experiments for online learn- ing from evolving data streams. MOA is designed to deal with the chal- lenging problems of scaling up the implementation of state of the art algorithms to real world dataset sizes and of making algorithms compa- rable in benchmark streaming settings. It contains a collection of offline and online algorithms for both classification and clustering as well as tools for evaluation. Researchers benefit from MOA by getting insights into workings and problems of different approaches, practitioners can easily compare several algorithms and apply them to real world data sets and settings. MOA supports bi-directional interaction with WEKA, the Waikato Environment for Knowledge Analysis, and is released under the GNU GPL license. Besides providing algorithms and measures for evaluation and comparison, MOA is easily extensible with new contri- butions and allows the creation of benchmark scenarios through storing and sharing setting files. 1 Introduction Nowadays data is generated at an increasing rate from sensor applications, mea- surements in network monitoring and traffic management, log records or click- streams in web exploring, manufacturing processes, call detail records, email, blogging, twitter posts and others. -
Adaptive Xgboost for Evolving Data Streams
Adaptive XGBoost for Evolving Data Streams Jacob Montiel∗, Rory Mitchell∗, Eibe Frank∗, Bernhard Pfahringer∗, Talel Abdessalem† and Albert Bifet∗† ∗ Department of Computer Science, University of Waikato, Hamilton, New Zealand Email: {jmontiel, eibe, bernhard, abifet}@waikato.ac.nz, [email protected] † LTCI, T´el´ecom ParisTech, Institut Polytechnique de Paris, Paris, France Email: [email protected] Abstract—Boosting is an ensemble method that combines and there is a potential change in the relationship between base models in a sequential manner to achieve high predictive features and learning targets, known as concept drift. Concept accuracy. A popular learning algorithm based on this ensemble drift is a challenging problem, and is common in many method is eXtreme Gradient Boosting (XGB). We present an adaptation of XGB for classification of evolving data streams. real-world applications that aim to model dynamic systems. In this setting, new data arrives over time and the relationship Without proper intervention, batch methods will fail after a between the class and the features may change in the process, concept drift because they are essentially trained for a different thus exhibiting concept drift. The proposed method creates new problem (concept). A common approach to deal with this members of the ensemble from mini-batches of data as new phenomenon, usually signaled by the degradation of a batch data becomes available. The maximum ensemble size is fixed, but learning does not stop when this size is reached because model, is to replace the model with a new model, which the ensemble is updated on new data to ensure consistency with implies a considerable investment on resources to collect and the current concept. -
Adaptive Learning and Mining for Data Streams and Frequent Patterns
Adaptive Learning and Mining for Data Streams and Frequent Patterns Doctoral Thesis presented to the Departament de Llenguatges i Sistemes Informatics` Universitat Politecnica` de Catalunya by Albert Bifet April 2009 Revised version with minor revisions. Advisors: Ricard Gavalda` and Jose´ L. Balcazar´ Abstract This thesis is devoted to the design of data mining algorithms for evolving data streams and for the extraction of closed frequent trees. First, we deal with each of these tasks separately, and then we deal with them together, developing classification methods for data streams containing items that are trees. In the data stream model, data arrive at high speed, and the algorithms that must process them have very strict constraints of space and time. In the first part of this thesis we propose and illustrate a framework for devel- oping algorithms that can adaptively learn from data streams that change over time. Our methods are based on using change detectors and estima- tor modules at the right places. We propose an adaptive sliding window algorithm ADWIN for detecting change and keeping updated statistics from a data stream, and use it as a black-box in place or counters or accumula- tors in algorithms initially not designed for drifting data. Since ADWIN has rigorous performance guarantees, this opens the possibility of extending such guarantees to learning and mining algorithms. We test our method- ology with several learning methods as Na¨ıve Bayes, clustering, decision trees and ensemble methods. We build an experimental framework for data stream mining with concept drift, based on the MOA framework, similar to WEKA, so that it will be easy for researchers to run experimental data stream benchmarks.