Increased FOXL2 Expression Alters Uterine Structures and Functions
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Regulation of Sex Determination in Mice by a Non-Coding Genomic Region
HIGHLIGHTED ARTICLE GENETICS OF SEX Regulation of Sex Determination in Mice by a Non-coding Genomic Region Valerie A. Arboleda,* Alice Fleming,* Hayk Barseghyan,* Emmanuèle Délot,*,† Janet S. Sinsheimer,*,‡ and Eric Vilain*,†,§,1 *Department of Human Genetics, †Department of Pediatrics, ‡Department of Biomathematics, and §Department of Urology, David Geffen School of Medicine, University of California, Los Angeles, California 90095-7088 ABSTRACT To identify novel genomic regions that regulate sex determination, we utilized the powerful C57BL/6J-YPOS (B6-YPOS) model of XY sex reversal where mice with autosomes from the B6 strain and a Y chromosome from a wild-derived strain, Mus domesticus poschiavinus (YPOS), show complete sex reversal. In B6-YPOS, the presence of a 55-Mb congenic region on chromosome 11 protects from sex reversal in a dose-dependent manner. Using mouse genetic backcross designs and high-density SNP arrays, we narrowed the congenic region to a 1.62-Mb genomic region on chromosome 11 that confers 80% protection from B6-YPOS sex reversal when one copy is present and complete protection when two copies are present. It was previously believed that the protective congenic region originated from the 129S1/SviMJ (129) strain. However, genomic analysis revealed that this region is not derived from 129 and most likely is derived from the semi-inbred strain POSA. We show that the small 1.62-Mb congenic region that protects against B6-YPOS sex reversal is located within the Sox9 promoter and promotes the expression of Sox9, thereby driving testis de- velopment within the B6-YPOS background. Through 30 years of backcrossing, this congenic region was maintained, as it promoted male sex determination and fertility despite the female-promoting B6-YPOS genetic background. -
Supplemental Materials ZNF281 Enhances Cardiac Reprogramming
Supplemental Materials ZNF281 enhances cardiac reprogramming by modulating cardiac and inflammatory gene expression Huanyu Zhou, Maria Gabriela Morales, Hisayuki Hashimoto, Matthew E. Dickson, Kunhua Song, Wenduo Ye, Min S. Kim, Hanspeter Niederstrasser, Zhaoning Wang, Beibei Chen, Bruce A. Posner, Rhonda Bassel-Duby and Eric N. Olson Supplemental Table 1; related to Figure 1. Supplemental Table 2; related to Figure 1. Supplemental Table 3; related to the “quantitative mRNA measurement” in Materials and Methods section. Supplemental Table 4; related to the “ChIP-seq, gene ontology and pathway analysis” and “RNA-seq” and gene ontology analysis” in Materials and Methods section. Supplemental Figure S1; related to Figure 1. Supplemental Figure S2; related to Figure 2. Supplemental Figure S3; related to Figure 3. Supplemental Figure S4; related to Figure 4. Supplemental Figure S5; related to Figure 6. Supplemental Table S1. Genes included in human retroviral ORF cDNA library. Gene Gene Gene Gene Gene Gene Gene Gene Symbol Symbol Symbol Symbol Symbol Symbol Symbol Symbol AATF BMP8A CEBPE CTNNB1 ESR2 GDF3 HOXA5 IL17D ADIPOQ BRPF1 CEBPG CUX1 ESRRA GDF6 HOXA6 IL17F ADNP BRPF3 CERS1 CX3CL1 ETS1 GIN1 HOXA7 IL18 AEBP1 BUD31 CERS2 CXCL10 ETS2 GLIS3 HOXB1 IL19 AFF4 C17ORF77 CERS4 CXCL11 ETV3 GMEB1 HOXB13 IL1A AHR C1QTNF4 CFL2 CXCL12 ETV7 GPBP1 HOXB5 IL1B AIMP1 C21ORF66 CHIA CXCL13 FAM3B GPER HOXB6 IL1F3 ALS2CR8 CBFA2T2 CIR1 CXCL14 FAM3D GPI HOXB7 IL1F5 ALX1 CBFA2T3 CITED1 CXCL16 FASLG GREM1 HOXB9 IL1F6 ARGFX CBFB CITED2 CXCL3 FBLN1 GREM2 HOXC4 IL1F7 -
Suppression of Notch Signaling Stimulates Progesterone Synthesis by Enhancing the Expression of NR5A2 and NR2F2 in Porcine Granulosa Cells
G C A T T A C G G C A T genes Article Suppression of Notch Signaling Stimulates Progesterone Synthesis by Enhancing the Expression of NR5A2 and NR2F2 in Porcine Granulosa Cells Rihong Guo 1,2, Fang Chen 2 and Zhendan Shi 1,2,* 1 Jiangsu Key Laboratory for Food Quality and Safety-State Key Laboratory Cultivation Base of Ministry of Science and Technology, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; [email protected] 2 Institute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; [email protected] * Correspondence: [email protected] Received: 16 December 2019; Accepted: 18 January 2020; Published: 22 January 2020 Abstract: The conserved Notch pathway is reported to be involved in progesterone synthesis and secretion; however, the exact effects remain controversial. To determine the role and potential mechanisms of the Notch signaling pathway in progesterone biosynthesis in porcine granulosa cells (pGCs), we first used a pharmacological γ-secretase inhibitor, N-(N-(3,5-difluorophenacetyl-l-alanyl))-S-phenylglycine t-butyl ester (DAPT), to block the Notch pathway in cultured pGCs and then evaluated the expression of genes in the progesterone biosynthesis pathway and key transcription factors (TFs) regulating steroidogenesis. We found that DAPT dose- and time-dependently increased progesterone secretion. The expression of steroidogenic proteins NPC1 and StAR and two TFs, NR5A2 and NR2F2, was significantly upregulated, while the expression of HSD3B was significantly downregulated. Furthermore, knockdown of both NR5A2 and NR2F2 with specific siRNAs blocked the upregulatory effects of DAPT on progesterone secretion and reversed the effects of DAPT on the expression of NPC1, StAR, and HSD3B. -
Ovarian Insufficiency and CTNNB1 Mutations Drive Malignant Transformation of Endometrial Hyperplasia with Altered PTEN/PI3K Activities
Ovarian insufficiency and CTNNB1 mutations drive malignant transformation of endometrial hyperplasia with altered PTEN/PI3K activities Jumpei Terakawaa,b,1,2, Vanida Ann Sernaa,b,1, Makoto Mark Taketoc, Takiko Daikokud, Adrian A. Suarezb,e, and Takeshi Kuritaa,b,3 aDepartment of Cancer Biology and Genetics, Ohio State University, Columbus, OH 43210; bThe Comprehensive Cancer Center, Ohio State University, Columbus, OH 43210; cDivision of Experimental Therapeutics, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, 606-8506 Kyoto, Japan; dDivision of Transgenic Animal Science, Advanced Science Research Center, Kanazawa University, 920-8640 Kanazawa, Japan; and eDepartment of Pathology, Ohio State University, Columbus, OH 43210 Edited by Patricia K. Donahoe, Pediatric Surgical Research Laboratories, Massachusetts General Hospital, Department of Surgery, Harvard Medical School, Boston, MA, and approved January 23, 2019 (received for review August 28, 2018) Endometrioid endometrial carcinomas (EECs) carry multiple driver PI3K (5). However, PTEN and PI3K (PIK3CA or PIK3R1)mu- mutations even when they are low grade. However, the biological tations co-occurred in 67% (59/88) of CL-EECs. This observation significance of these concurrent mutations is unknown. We explored questions the widely accepted concept that the loss of PTEN and the interactions among three signature EEC mutations: loss-of- activation of PI3K have synonymous effects on cellular physiology, as function (LOF) mutations in PTEN, gain-of-function (GOF) mutations they catalyze opposite reactions: PI3K converts phosphatidylinositol of phosphoinositide 3-kinase (PI3K), and CTNNB1 exon 3 mutations, (4,5)-biphosphate (PIP2) to phosphatidylinositol (3,4,5)-trisphosphate utilizing in vivo mutagenesis of the mouse uterine epithelium. -
Vaginal Cancer, Risk Factors, and Prevention Risk Factors for Vaginal
cancer.org | 1.800.227.2345 Vaginal Cancer, Risk Factors, and Prevention Risk Factors A risk factor is anything that affects your chance of getting a disease such as cancer. Learn more about the risk factors for vaginal cancer. ● Risk Factors for Vaginal Cancer ● What Causes Vaginal Cancer? Prevention There's no way to completely prevent cancer. But there are things you can do that might help lower your risk. Learn more here. ● Can Vaginal Cancer Be Prevented? Risk Factors for Vaginal Cancer A risk factor is anything that affects your chance of getting a disease such as cancer. Different cancers have different risk factors. Some risk factors, like smoking, can be changed. Others, like a person’s age or family history, can’t be changed. But having a risk factor, or even many, does not mean that you will get the disease. And 1 ____________________________________________________________________________________American Cancer Society cancer.org | 1.800.227.2345 some people who get the disease may not have any known risk factors. Scientists have found that certain risk factors make a woman more likely to develop vaginal cancer. But many women with vaginal cancer don’t have any clear risk factors. And even if a woman with vaginal cancer has one or more risk factors, it’s impossible to know for sure how much that risk factor contributed to causing the cancer. Age Squamous cell cancer of the vagina occurs mainly in older women. It can happen at any age, but few cases are found in women younger than 40. Almost half of cases occur in women who are 70 years old or older. -
Journal.Pbio.2005886 August 10, 2018 1 / 47 Muscle Clock Directs Diurnal Metabolism
RESEARCH ARTICLE Transcriptional programming of lipid and amino acid metabolism by the skeletal muscle circadian clock Kenneth Allen Dyar1,2*, MichaeÈl Jean Hubert1, Ashfaq Ali Mir1, Stefano Ciciliot2, Dominik Lutter1, Franziska Greulich1, Fabiana Quagliarini1, Maximilian Kleinert1, Katrin Fischer1, Thomas Oliver Eichmann3, Lauren Emily Wright4, Marcia Ivonne Peña Paz2, Alberto Casarin5, Vanessa Pertegato5, Vanina Romanello2, Mattia Albiero2, Sara Mazzucco6, Rosario Rizzuto4, Leonardo Salviati5, Gianni Biolo6, Bert Blaauw2,4, a1111111111 Stefano Schiaffino2, N. Henriette Uhlenhaut1,7* a1111111111 1 Helmholtz Diabetes Center (HMGU) and German Center for Diabetes Research (DZD), Institute for a1111111111 Diabetes and Obesity (IDO), Munich, Germany, 2 Venetian Institute of Molecular Medicine (VIMM), Padova, a1111111111 Italy, 3 Institute of Molecular Biosciences, University of Graz, Graz, Austria, 4 Department of Biomedical a1111111111 Sciences, University of Padova, Padova, Italy, 5 Clinical Genetics Unit, Department of Woman and Child Health, University of Padova, and IRP Città della Speranza, Padova, Italy, 6 Clinica Medica, Department of Medical Sciences, University of Trieste, Trieste, Italy, 7 Gene Center, Ludwig-Maximilians-Universitaet (LMU), Munich, Germany * [email protected] (KAD); [email protected] (NHU) OPEN ACCESS Citation: Dyar KA, Hubert MJ, Mir AA, Ciciliot S, Lutter D, Greulich F, et al. (2018) Transcriptional programming of lipid and amino acid metabolism Abstract by the skeletal -
Sex Determination and Differentiation
The new england journal of medicine review article mechanisms of disease Sex Determination and Differentiation David T. MacLaughlin, Ph.D., and Patricia K. Donahoe, M.D. ex determination, which depends on the sex-chromosome com- From the Pediatric Surgical Research Lab- plement of the embryo, is established by multiple molecular events that direct the oratories and the Pediatric Surgical Servic- s es, Massachusetts General Hospital and development of germ cells, their migration to the urogenital ridge, and the forma- Harvard Medical School, Boston. Address tion of either a testis, in the presence of the Y chromosome (46,XY), or an ovary in the reprint requests to Dr. MacLaughlin or Dr. absence of the Y chromosome and the presence of a second X chromosome (46,XX). Donahoe at the Pediatric Surgical Research Laboratories, Massachusetts General Hos- Sex determination sets the stage for sex differentiation, the sex-specific response of tis- pital, Boston, MA 02114, or at maclaughlin@ sues to hormones produced by the gonads after they have differentiated in a male or fe- helix.mgh.harvard.edu or donahoe.patricia male pattern. A number of genes have been discovered that contribute both early and late @mgh.harvard.edu. to the process of sex determination and differentiation. In many cases our knowledge has N Engl J Med 2004;350:367-78. derived from studies of either spontaneous or engineered mouse mutations that cause Copyright © 2004 Massachusetts Medical Society. phenotypes similar to those in humans. We will examine how mutations in these genes cause important clinical syndromes (Table 1 and Fig. 1) and discuss clinical entities that continue to elude classification at the molecular level. -
Epigenetic Services Citations
Active Motif Epigenetic Services Publications The papers below contain data generated by Active Motif’s Epigenetic Services team. To learn more about our services, please give us a call or visit us at www.activemotif.com/services. Technique Target Journal Year Reference Justin C. Boucher et al. CD28 Costimulatory Domain- ATAC-Seq, Cancer Immunol. Targeted Mutations Enhance Chimeric Antigen Receptor — 2021 RNA-Seq Res. T-cell Function. Cancer Immunol. Res. doi: 10.1158/2326- 6066.CIR-20-0253. Satvik Mareedu et al. Sarcolipin haploinsufficiency Am. J. Physiol. prevents dystrophic cardiomyopathy in mdx mice. RNA-Seq — Heart Circ. 2021 Am J Physiol Heart Circ Physiol. doi: 10.1152/ Physiol. ajpheart.00601.2020. Gabi Schutzius et al. BET bromodomain inhibitors regulate Nature Chemical ChIP-Seq BRD4 2021 keratinocyte plasticity. Nat. Chem. Biol. doi: 10.1038/ Biology s41589-020-00716-z. Siyun Wang et al. cMET promotes metastasis and ChIP-qPCR FOXO3 J. Cell Physiol. 2021 epithelial-mesenchymal transition in colorectal carcinoma by repressing RKIP. J. Cell Physiol. doi: 10.1002/jcp.30142. Sonia Iyer et al. Genetically Defined Syngeneic Mouse Models of Ovarian Cancer as Tools for the Discovery of ATAC-Seq — Cancer Discovery 2021 Combination Immunotherapy. Cancer Discov. doi: doi: 10.1158/2159-8290 Vinod Krishna et al. Integration of the Transcriptome and Genome-Wide Landscape of BRD2 and BRD4 Binding BRD2, BRD4, RNA Motifs Identifies Key Superenhancer Genes and Reveals ChIP-Seq J. Immunol. 2021 Pol II the Mechanism of Bet Inhibitor Action in Rheumatoid Arthritis Synovial Fibroblasts. J. Immunol. doi: doi: 10.4049/ jimmunol.2000286. Daniel Haag et al. -
Case Report a Report of Two Cases of Age-Related Changes in Cervical Morphology in Postmenopausal Women with Vaginal Adenosis
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Crossref Hindawi Case Reports in Obstetrics and Gynecology Volume 2017, Article ID 9523853, 4 pages https://doi.org/10.1155/2017/9523853 Case Report A Report of Two Cases of Age-Related Changes in Cervical Morphology in Postmenopausal Women with Vaginal Adenosis Marguerite B. Vigliani Alpert Medical School at Brown University, Providence, RI, USA Correspondence should be addressed to Marguerite B. Vigliani; [email protected] Received 28 October 2016; Accepted 18 December 2016; Published 2 January 2017 Academic Editor: John P. Geisler Copyright © 2017 Marguerite B. Vigliani. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. This paper presents two cases of women who had extensive vaginal adenosis from prenatal DES exposure, extending almost halfway down the vaginal canal. Both women were followed for decades with annual exams and Pap smears until after menopause. Clinical examination in both cases initially showed an absent pars vaginalis of the cervix, vaginal adenosis, and shallowness of the fornices. Several decades of annual exams showed these stigmata of DES exposure gradually disappear as the upper vagina progressively contracted. After menopause the upper vagina in both cases transformed into what appeared to be a normal cervix with all adenosis involuted into a normal endocervical canal. A timeline was created to show the morphological changes that were observed over time. This timeline illustrates how severe vaginal stenosis above the level of the squamocolumnar junction developed in middle age and was followed in the postmenopause by fusion of the upper vaginal walls in the midline resulting in the appearance of a normal, but prolapsed, cervix. -
Supplementary File 1
Supplementary Materials Figure S1. RNA sequencing quality control report. The upper panel showed per base sequence quality of (a) miRNA from 786-O and ACHN, and (b) RNA from 786-O and ACHN; the lower panel showed the per sequence quality scores of (c) miRNA from 786-O and ACHN, and (d) RNA from 786-O and ACHN. The quality score from 15 to 99 bp fell into the green background, indicating good quality calls. The majority read > 35 indicated good sequencing quality. Table S1. The list of miRNA with significant changes (ACHN vs 786-O) #miRNA Fold Change #miRNA Fold Change #miRNA Fold Change hsa-let-7a-2-3p -490.00 hsa-miR-192-5p 21.37 hsa-miR-323a-3p 135.76 hsa-let-7c-3p -10.30 hsa-miR-194-3p 31.18 hsa-miR-323b-3p 53.75 hsa-miR-100-3p -26.39 hsa-miR-194-5p 21.87 hsa-miR-326 -16.46 hsa-miR-100-5p -63.93 hsa-miR-195-5p 8.31 hsa-miR-329-3p 101.81 hsa-miR-105-5p -288.00 hsa-miR-196a-3p 5.28 hsa-miR-329-5p 436 hsa-miR-1185-1-3p 32.08 hsa-miR-199b-5p -9.75 hsa-miR-335-3p 73.67 hsa-miR-1185-2-3p 37.22 hsa-miR-203a-3p 222.25 hsa-miR-335-5p 71.58 hsa-miR-1185-5p 91.13 hsa-miR-205-5p -5.12 hsa-miR-337-3p 1696 hsa-miR-1197 7.38 hsa-miR-20b-5p 5.28 hsa-miR-337-5p 12141 hsa-miR-125b-1-3p -301.58 hsa-miR-211-5p 118 hsa-miR-34b-3p 1110.62 hsa-miR-125b-2-3p 5.91 hsa-miR-215-5p 18.88 hsa-miR-34b-5p 796.38 hsa-miR-1262 16.28 hsa-miR-218-5p 14.37 hsa-miR-34c-3p 10751 hsa-miR-1266-5p 6.62 hsa-miR-224-5p 118 hsa-miR-34c-5p 836.81 hsa-miR-127-3p 1723.39 hsa-miR-2277-3p 6.65 hsa-miR-3614-5p 141 hsa-miR-127-5p 4334.00 hsa-miR-2682-3p 6.63 hsa-miR-3617-5p -140 hsa-miR-1271-5p -
Hes1 in the Somatic Cells of the Murine Ovary Is Necessary for Oocyte Survival and Maturation
Developmental Biology 375 (2013) 140–151 Contents lists available at SciVerse ScienceDirect Developmental Biology journal homepage: www.elsevier.com/locate/developmentalbiology Hes1 in the somatic cells of the murine ovary is necessary for oocyte survival and maturation Iris Manosalva a,b,n, Aitor Gonza´lez a,b,1, Ryoichiro Kageyama a,b,n a Institute for Virus Research, Kyoto University, Kyoto, Japan b Japan Science and Technology Agency, CREST, Kyoto, Japan article info abstract Article history: The Notch pathway plays an important role in ovary development in invertebrates like Drosophila. Received 25 February 2012 However its role for the mammalian ovary is unclear. Mammalian Hes genes encode transcriptional Received in revised form factors that mediate many of the activities of the Notch pathway. Here, we have studied the function of 18 December 2012 Hes1 during embryonic development of the mouse ovary. We find that Hes1 protein is present in Accepted 19 December 2012 somatic cells and oocyte cytoplasm and decreases between E15.5 and P0. Conventional Hes1 knock-out Available online 27 December 2012 (KO), Hes1 conditional KO in the ovarian somatic, and chemical inhibition of Notch signaling decrease Keywords: the total number, size and maturation of oocytes and increase the number of pregranulosa cells at P0. Mouse These defects correlate with abnormal proliferation and enhanced apoptosis. Expression of the Ovary proapoptotic gene Inhbb is increased, while the levels of the antiapoptotic and oocyte maturation Notch pathway marker Kit are decreased in the Hes1 KO ovaries. Conversely, overactivation of the Notch pathway Hes1 Oocytes in ovarian somatic cells increases the number of mature oocytes and decreases the number of Fertility pregranulosa cells. -
Supplement. Transcriptional Factors (TF), Protein Name and Their Description Or Function
Supplement. Transcriptional factors (TF), protein name and their description or function. TF Protein name TF description/function ARID3A AT rich interactive domain 3A (BRIGHT-like) This gene encodes a member of the ARID (AT-rich interaction domain) family of DNA binding proteins. ATF4 Activating Transcription Factor 4 Transcriptional activator. Binds the cAMP response element (CRE) (consensus: 5-GTGACGT[AC][AG]-3), a sequence present in many viral and cellular promoters. CTCF CCCTC-Binding Factor Chromatin binding factor that binds to DNA sequence specific sites. Involved in transcriptional regulation by binding to chromatin insulators and preventing interaction between promoter and nearby enhancers and silencers. The protein can bind a histone acetyltransferase (HAT)-containing complex and function as a transcriptional activator or bind a histone deacetylase (HDAC)-containing complex and function as a transcriptional repressor. E2F1-6 E2F transcription factors 1-6 The protein encoded by this gene is a member of the E2F family of transcription factors. The E2F family plays a crucial role in the control of cell cycle and action of tumor suppressor proteins and is also a target of the transforming proteins of small DNA tumor viruses. The E2F proteins contain several evolutionally conserved domains found in most members of the family. These domains include a DNA binding domain, a dimerization domain which determines interaction with the differentiation regulated transcription factor proteins (DP), a transactivation domain enriched in acidic amino acids, and a tumor suppressor protein association domain which is embedded within the transactivation domain. EBF1 Transcription factor COE1 EBF1 has been shown to interact with ZNF423 and CREB binding proteins.