<I> Desmopsis</I> (<I>Annonaceae
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Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
bioRxiv preprint doi: https://doi.org/10.1101/440925; this version posted October 11, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Phylogenomics of the major tropical plant family Annonaceae using targeted enrichment of nuclear genes Thomas L.P. Couvreur1,*+, Andrew J. Helmstetter1,+, Erik J.M. Koenen2, Kevin Bethune1, Rita D. Brandão3, Stefan Little4, Hervé Sauquet4,5, Roy H.J. Erkens3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France 2 Institute of Systematic Botany, University of Zurich, Zürich, Switzerland 3 Maastricht University, Maastricht Science Programme, P.O. Box 616, 6200 MD Maastricht, The Netherlands 4 Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université-Paris Saclay, 91400, Orsay, France 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, Australia * [email protected] + authors contributed equally Abstract Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic reconstruction is becoming an important tool for plant systematics and evolution. Annonaceae is a major pantropical plant family with 109 genera and ca. 2450 species, occurring across all major and minor tropical forests of the world. Baits were designed by sequencing the transcriptomes of five species from two of the largest Annonaceae subfamilies. Orthologous loci were identified. The resulting baiting kit was used to reconstruct phylogenetic relationships at two different levels using concatenated and gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and a species level analysis of tribe Piptostigmateae sampling 29 species with multiple individuals per species. -
Is Pseudoxandra Spiritus-Sancti (Annonaceae), with Its Male and Bisexual Flowers, an Androdioecious Species?
Filogenômica, morfologia e taxonomia na tribo Malmeeae (Malmeoideae, Annonaceae): implicações na evolução da androdioicia Phylogenomics, morphology and taxonomy in tribe Malmeeae (Malmeoideae, Annonaceae): implications on the evolution of androdioecy Jenifer de Carvalho Lopes São Paulo 2016 Filogenômica, morfologia e taxonomia na tribo Malmeeae (Malmeoideae, Annonaceae): implicações na evolução da androdioicia Phylogenomics, morphology and taxonomy in tribe Malmeeae (Malmeoideae, Annonaceae): implications on the evolution of androdioecy Jenifer de Carvalho Lopes Tese apresentada ao Instituto de Biociências da Universidade de São Paulo, para a obtenção de Título de Doutor em Ciências, na Área de Botânica. Orientador: Renato de Mello-Silva São Paulo 2016 Lopes, Jenifer de Carvalho Filogenômica, morfologia e taxonomia na tribo Malmeeae (Malmeoideae, Annonaceae): implicações na evolução da androdioicia / 98 Tese (Doutorado) – Instituto de Biociências da Universidade de São Paulo. Departamento de Botânica 1. Androdioicia. 2. Annonaceae. 3. Filogenômica. I. Universidade de São Paulo. Instituto de Biociências. Departamento de Botânica. Comissão Julgadora: ________________________ _______________________ Prof(a). Dr(a). Prof(a). Dr(a). ________________________ _______________________ Prof(a). Dr(a). Prof(a). Dr(a). ______________________ Prof. Dr. Renato de Mello-Silva Orientador Metafísica? Que metafísica têm aquelas árvores? A de serem verdes e copadas e de terem ramos E a de dar fruto na sua hora, o que não nos faz pensar, A nós, que não sabemos dar por elas. Mas que melhor metafísica que a delas, Que é a de não saber para que vivem Nem saber que o não sabem? Alberto Caeiro, heterônimo de Fernando Pessoa Trecho de Guardador de Rebanhos, poema quinto Agradecimentos Gostaria de agradecer à Universidade de São Paulo pela estrutura fornecida para o desenvolvimento da minha pesquisa e formação acadêmica. -
The Ecology of Trees in the Tropical Rain Forest
This page intentionally left blank The Ecology of Trees in the Tropical Rain Forest Current knowledge of the ecology of tropical rain-forest trees is limited, with detailed information available for perhaps only a few hundred of the many thousands of species that occur. Yet a good understanding of the trees is essential to unravelling the workings of the forest itself. This book aims to summarise contemporary understanding of the ecology of tropical rain-forest trees. The emphasis is on comparative ecology, an approach that can help to identify possible adaptive trends and evolutionary constraints and which may also lead to a workable ecological classification for tree species, conceptually simplifying the rain-forest community and making it more amenable to analysis. The organisation of the book follows the life cycle of a tree, starting with the mature tree, moving on to reproduction and then considering seed germi- nation and growth to maturity. Topics covered therefore include structure and physiology, population biology, reproductive biology and regeneration. The book concludes with a critical analysis of ecological classification systems for tree species in the tropical rain forest. IAN TURNERhas considerable first-hand experience of the tropical rain forests of South-East Asia, having lived and worked in the region for more than a decade. After graduating from Oxford University, he took up a lecturing post at the National University of Singapore and is currently Assistant Director of the Singapore Botanic Gardens. He has also spent time at Harvard University as Bullard Fellow, and at Kyoto University as Guest Professor in the Center for Ecological Research. -
A New Subfamilial and Tribal Classification of the Pantropical Flowering Plant Family Annonaceae Informed by Molecular Phylogene
bs_bs_banner Botanical Journal of the Linnean Society, 2012, 169, 5–40. With 1 figure A new subfamilial and tribal classification of the pantropical flowering plant family Annonaceae informed by molecular phylogenetics LARS W. CHATROU1*, MICHAEL D. PIRIE2, ROY H. J. ERKENS3,4, THOMAS L. P. COUVREUR5, KURT M. NEUBIG6, J. RICHARD ABBOTT7, JOHAN B. MOLS8, JAN W. MAAS3, RICHARD M. K. SAUNDERS9 and MARK W. CHASE10 1Wageningen University, Biosystematics Group, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands 2Department of Biochemistry, University of Stellenbosch, Stellenbosch, Private Bag X1, Matieland 7602, South Africa 3Utrecht University, Institute of Environmental Biology, Ecology and Biodiversity Group, Padualaan 8, 3584 CH, Utrecht, the Netherlands 4Maastricht Science Programme, Maastricht University, Kapoenstraat 2, 6211 KL Maastricht, the Netherlands 5Institut de Recherche pour le Développement (IRD), UMR DIA-DE, DYNADIV Research Group, 911, avenue Agropolis, BP 64501, F-34394 Montpellier cedex 5, France 6Florida Museum of Natural History, University of Florida, PO Box 117800, Gainesville, FL 32611-7800, USA 7Missouri Botanical Garden, PO Box 299, St. Louis, MO 63166-0299, USA 8Netherlands Centre for Biodiversity, Naturalis (section NHN), Leiden University, Einsteinweg 2, 2333 CC Leiden, the Netherlands 9School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China 10Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK Received 14 October 2011; revised 11 December 2011; accepted for publication 24 January 2012 The pantropical flowering plant family Annonaceae is the most species-rich family of Magnoliales. Despite long-standing interest in the systematics of Annonaceae, no authoritative classification has yet been published in the light of recent molecular phylogenetic analyses. -
Phylogeny and Geographic History of Annonaceae Phylogénie Et Histoire Géographique Des Annonaceae Phylogenie Und Geographische Geschichte Der Annonaceae James A
Document generated on 09/27/2021 5:58 p.m. Géographie physique et Quaternaire Phylogeny and Geographic History of Annonaceae Phylogénie et histoire géographique des Annonaceae Phylogenie und geographische Geschichte der Annonaceae James A. Doyle and Annick Le Thomas Volume 51, Number 3, 1997 Article abstract Whereas Takhtajan and Smith situated the origin of angiosperms between URI: https://id.erudit.org/iderudit/033135ar Southeast Asia and Australia, Walker and Le Thomas emphasized the DOI: https://doi.org/10.7202/033135ar concentration of primitive pollen types of Annonaceae in South America and Africa, suggesting instead a Northern Gondwanan origin for this family of See table of contents primitive angiosperms. A cladistic analysis of Annonaceae shows a basal split of the family into Anaxagorea, the only genus with an Asian and Neotropical distribution, and a basically African and Neotropical line that includes the rest Publisher(s) of the family. Several advanced lines occur in both Africa and Asia, one of which reaches Australia. This pattern may reflect the following history: (a) Les Presses de l'Université de Montréal disjunction of Laurasian (Anaxagorea) and Northern Gondwanan lines in the Early Cretaceous, when interchanges across the Tethys were still easy and the ISSN major lines of Magnoliidae are documented by paleobotany; (b) radiation of the Northern Gondwanan line during the Late Cretaceous, while oceanic 0705-7199 (print) barriers were widening; (c) dispersal of African lines into Laurasia due to 1492-143X (digital) northward movement of Africa and India in the Early Tertiary, attested by the presence of fossil seeds of Annonaceae in Europe, and interchanges between Explore this journal North and South America at the end of the Tertiary. -
A New Annonaceae Genus, <I>Wuodendron</I>, Provides Support for a Post-Boreotropical Origin of the Asian-Neotropical
Xue & al. • A new Annonaceae genus, Wuodendron TAXON 67 (2) • April 2018: 250–266 A new Annonaceae genus, Wuodendron, provides support for a post-boreotropical origin of the Asian-Neotropical disjunction in the tribe Miliuseae Bine Xue,1 Yun-Hong Tan,2,3 Daniel C. Thomas,4 Tanawat Chaowasku,5 Xue-Liang Hou6 & Richard M.K. Saunders7 1 Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China 2 Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences, Yezin, Nay Pyi Taw, Myanmar 3 Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun 666303, Yunnan, China 4 National Parks Board, Singapore Botanic Gardens, 1 Cluny Road, Singapore 259569, Singapore 5 Herbarium, Division of Plant Science and Technology, Department of Biology, Faculty of Science, Chiang Mai University, Thailand 6 School of Life Sciences, Xiamen University, Xiamen 361005, Fujian, China 7 School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong, China Authors for correspondence: Bine Xue, [email protected]; Yunhong Tan, [email protected] DOI https://doi.org/10.12705/672.2 Abstract Recent molecular and morphological studies have clarified generic circumscriptions in Annonaceae tribe Miliuseae and resulted in the segregation of disparate elements from the previously highly polyphyletic genus Polyalthia s.l. Several names in Polyalthia nevertheless remain unresolved, awaiting -
Phylogenomics and Evolution of Floral Traits in the Neotropical Tribe
Molecular Phylogenetics and Evolution 118 (2018) 379–391 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenomics and evolution of floral traits in the Neotropical tribe T Malmeeae (Annonaceae) ⁎ J.C. Lopesa, ,1, L.W. Chatroub, R. Mello-Silvaa, P.J. Rudallc, M.G. Sajod a Universidade de São Paulo, Instituto de Biociências, Departamento de Botânica, Rua do Matão, 277, 05508-090 São Paulo, SP, Brazil b Wageningen University and Research, Biosystematics Group, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands c Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, UK d Universidade Estadual Paulista, Instituto de Biociências, Departamento de Botânica, Avenida 24A, 13506-900 Rio Claro, SP, Brazil ARTICLE INFO ABSTRACT Keywords: Androdioecy is the rarest sexual system among plants. The majority of androdioecious species are herbaceous Ancestral state analysis plants that have evolved from dioecious ancestors. Nevertheless, some woody and androdioecious plants have Androdioecy hermaphrodite ancestors, as in the Annonaceae, where androdioecious genera have arisen several times in Floral morphology different lineages. The majority of androdioecious species of Annonaceae belong to the Neotropical tribe Next-generation sequencing Malmeeae. In addition to these species, Pseudoxandra spiritus-sancti was recently confirmed to be androdioecious. Here, we describe the morphology of male and bisexual flowers of Pseudoxandra spiritus-sancti, and investigate the evolution of androdioecy in Malmeeae. The phylogeny of tribe Malmeeae was reconstructed using Bayesian inference, maximum parsimony and maximum likelihood of 32 taxa, using DNA sequences of 66 molecular markers of the chloroplast genome, sequenced by next generation sequencing. The reconstruction of ancestral states was performed for characters associated with sexual systems and floral morphology. -
BOTANICAL ILLUSTRATION WORKSHOP 1-2 September 2013
CONTENT CONTENT WELCOME MESSAGE ............................................................................................... 1 ORGANIZING COMMITTEE ...................................................................................... 2 GENERAL INFORMATION ....................................................................................... 5 CONFERENCE PROGRAM OVERVIEW ............................................................ 12 KEYNOTE LECTURE ................................................................................................. 16 ORAL PRESENTATION DAY 1: SESSION 1 – 2 ........................................................................................ 19 DAY 2: SESSION 3 – 6 ........................................................................................ 54 DAY 4: SESSION 7 – 9 ........................................................................................ 126 DAY 5: SESSION 10 – 12 .................................................................................... 178 POSTER PRESENTATION ......................................................................................... 217 MISCELLANEOUS ....................................................................................................... 295 LIST OF PARTICIPANTS .......................................................................................... 304 AUTHOR INDEX ........................................................................................................ 329 9th International Flora Malesiana Symposium i WELCOME MESSAGE -
Phylogeny, Molecular Dating and Floral Evolution of Magnoliidae (Angiospermae) Julien Massoni
Phylogeny, molecular dating and floral evolution of Magnoliidae (Angiospermae) Julien Massoni To cite this version: Julien Massoni. Phylogeny, molecular dating and floral evolution of Magnoliidae (Angiospermae). Vegetal Biology. Université Paris Sud - Paris XI, 2014. English. NNT : 2014PA112058. tel-01044699 HAL Id: tel-01044699 https://tel.archives-ouvertes.fr/tel-01044699 Submitted on 24 Jul 2014 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. UNIVERSITÉ PARIS-SUD ÉCOLE DOCTORALE : SCIENCES DU VÉGÉTAL Laboratoire Ecologie, Systématique et Evolution DISCIPLINE : BIOLOGIE THÈSE DE DOCTORAT Soutenue le 11/04/2014 par Julien MASSONI Phylogeny, molecular dating, and floral evolution of Magnoliidae (Angiospermae) Composition du jury : Directeur de thèse : Hervé SAUQUET Maître de Conférences (Université Paris-Sud) Rapporteurs : Susanna MAGALLÓN Professeur (Universidad Nacional Autónoma de México) Thomas HAEVERMANS Maître de Conférences (Muséum national d’Histoire Naturelle) Examinateurs : Catherine DAMERVAL Directeur de Recherche (CNRS, INRA) Michel LAURIN Directeur de Recherche (CNRS, Muséum national d’Histoire Naturelle) Florian JABBOUR Maître de Conférences (Muséum national d’Histoire Naturelle) Michael PIRIE Maître de Conférences (Johannes Gutenberg Universität Mainz) Membres invités : Hervé SAUQUET Maître de Conférences (Université Paris-Sud) Remerciements Je tiens tout particulièrement à remercier mon directeur de thèse et ami Hervé Sauquet pour son encadrement, sa gentillesse, sa franchise et la confiance qu’il m’a accordée. -
Revision of the Neotropical Genus Desmopsis (Annonaceae)
Blumea 63, 2018: 67–86 ISSN (Online) 2212-1676 www.ingentaconnect.com/content/nhn/blumea RESEARCH ARTICLE https://doi.org/10.3767/blumea.2018.63.01.07 Revision of the Neotropical genus Desmopsis (Annonaceae) G.E. Schatz1, P.J.M. Maas2, H. Maas-van de Kamer2, L.Y.T. Westra2, J.J. Wieringa2 Key words Abstract A taxonomic revision of the genus Desmopsis is presented. Within the genus Desmopsis 25 species are recognized, 9 of which are new, with one new combination. Distinguishing morphological characteristics are Annonaceae discussed, and a dichotomous key to all species is given. The species treatments include descriptions, full synonymy, descriptions geographical and ecological notes, vernacular names, and taxonomic notes. Distribution maps are presented of all Desmopsis species, and a complete identification list of exsiccatae examined is included. morphology Neotropics Published on 26 June 2018 phylogeny taxonomy vernacular names INTRODUCTION Leaves Leaves are simple, entire, petiolate, and estipulate, and ar- While working in the Office of Economic and Systematic Botany ranged alternately in a single plane along lateral branches of the Bureau of Plant Industry within the United States De- (distichous). Petioles are usually short, less than 10 mm long, partment of Agriculture during the early 20th century, William the longest petioles found in D. biseriata (5–15 mm), D. wendtii E. Safford (1859–1926) conducted taxonomic research on (7–15 mm), and D. verrucipes (5–20 mm). The shape of the various groups including Acacia, Cactaceae, and Annonaceae. lamina is narrowly elliptic to elliptic, occasionally narrowly ovate Among the six genera of Annonaceae Safford described, only to ovate or obovate, or rarely rhombic-obovate to circular in two currently remain accepted: Desmopsis and Fusaea. -
A New Species of Stenanona (Annonaceae) Endemic to Chiapas, Mexico
Botanical Sciences 92 (1): 37-41, 2014 TAXONOMY AND FLORISTICS A NEW SPECIES OF STENANONA (ANNONACEAE) ENDEMIC TO CHIAPAS, MEXICO ANDRES ERNESTO ORTIZ-RODRIGUEZ1, 5, GEORGE E. SCHATZ2, YUYINI LICONA-VERA3 AND EDUARDO RUIZ-SANCHEZ4 1Instituto de Ecología, A.C., Red de Biodiversidad y Sistemática, Xalapa, Veracruz, Mexico 2Missouri Botanical Garden, St. Louis, Missouri, USA 3Instituto de Ecología, A.C., Red de Biología Evolutiva, Xalapa, Veracruz, Mexico 4Instituto de Ecología, A.C., Centro Regional de Bajío, Red de Biodiversidad y Sistemática, Pátzcuaro, Michoacán, Mexico 5Corresponding author: [email protected] Abstract: A new species endemic to Chiapas, Mexico, Stenanona migueliana (Annonaceae), is described and illustrated. The new species has affi nity with S. stenopetala, from which it differs in the length of the fl oral pedicel, size of the sepals, arrangement of the ovules, and surface texture of the fruit. A key to the Mexican species of Stenanona is presented. Keywords: Berriozábal, conservation, Neotropics, taxonomy, tropical moist forests. Resumen: Se describe e ilustra Stenanona migueliana (Annonaceae), una especie endémica del estado de Chiapas, México. La nueva especie presenta afi nidad con S. stenopetala, de la cual difi ere en el largo del pedicelo fl oral, el tamaño de los sépalos, la dispo- sición de los óvulos y la textura de la superfi cie del fruto. Se incluye una clave para las especies mexicanas del género Stenanona. Palabras clave: Berriozábal, bosque tropical húmedo, conservación, Neotropicos, taxonomía. tenanona Standl., is a Neotropical genus of dwarf to In Mexico (Chiapas, Oaxaca, Tabasco, and Veracruz), Ssmall trees that comprises 14 described species, geogra- have been recorded seven of the 15 species of Stenano- phically distributed from southern Mexico to southern Co- na, six of which are endemic to Mexico, with only one lombia at elevations ranging from 0 to 1,250 m. -
A Mega-Phylogeny of the Annonaceae: Taxonomic Placement of Title Five Enigmatic Genera and Support for a New Tribe, Phoenicantheae
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by HKU Scholars Hub A mega-phylogeny of the Annonaceae: taxonomic placement of Title five enigmatic genera and support for a new tribe, Phoenicantheae Author(s) Guo, X; TANG, CC; Thomas, DC; Couvreur, TLP; Saunders, RMK Citation Scientific Reports, 2017, v. 7, p. 7323 Issued Date 2017 URL http://hdl.handle.net/10722/246365 This work is licensed under a Creative Commons Attribution- Rights NonCommercial-NoDerivatives 4.0 International License. www.nature.com/scientificreports OPEN A mega-phylogeny of the Annonaceae: taxonomic placement of fve enigmatic genera and support Received: 10 April 2017 Accepted: 26 June 2017 for a new tribe, Phoenicantheae Published: xx xx xxxx Xing Guo1, Chin Cheung Tang1,4, Daniel C. Thomas 1,2, Thomas L. P. Couvreur3 & Richard M. K. Saunders 1 The Annonaceae, the largest family in the early-divergent order Magnoliales, comprises 107 genera and c. 2,400 species. Previous molecular phylogenetic studies targeting diferent taxa have generated large quantities of partially overlapping DNA sequence data for many species, although a large-scale phylogeny based on the maximum number of representatives has never been reconstructed. We use a supermatrix of eight chloroplast markers (rbcL, matK, ndhF, psbA-trnH, trnL-F, atpB-rbcL, trnS-G and ycf1) to reconstruct the most comprehensive tree to date, including 705 species (29%) from 105 genera (98%). This provides novel insights into the relationships of fve enigmatic genera (Bocagea, Boutiquea, Cardiopetalum, Duckeanthus and Phoenicanthus). Fifteen main clades are retrieved in subfamilies Annonoideae and Malmeoideae collectively, 14 of which correspond with currently recognised tribes.