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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Gfsklyfamide-Like Neuropeptide Is Expressed in the Female Gonad of the Sea Cucumber, Holothuria Scabra
Vol. 14(1), pp. 1-5, January-June 2020 DOI: 10.5897/JCAB2017.0454 Article Number: CFBFDED62964 ISSN 1996-0867 Copyright © 2020 Author(s) retain the copyright of this article Journal of Cell and Animal Biology http://www.academicjournals.org/JCAB Full Length Research Paper GFSKLYFamide-like neuropeptide is expressed in the female gonad of the sea cucumber, Holothuria scabra Ajayi Abayomi1* and Amedu Nathaniel O.1,2 1Department of Anatomy, Faculty of Basic Medical Sciences, College of Health Sciences, Kogi State University, Anyigba, PMB 1008, Anyigba, Nigeria. 2Department of Anatomy, Faculty of Basic Medical Sciences, College of Health Sciences, University of Ilorin, PMB 1515, Ilorin, Nigeria. Received 14 October, 2017; Accepted 11 January, 2018 Neuropeptides are mediators of neuronal signalling, controlling a wide range of physiological processes that cut across many organisms. GFSKLYFamide is a neuropeptide that belongs to the Echinoderm SALMFamide group of peptides. This study was aimed at determining the expression of GFSKLYFamide-like neuropeptide in the female gonad of the sea cucumber Holothuria scabra. Ten female H. scabra weighing between 62 and 175 g were collected at different times between May, 2009 and April, 2010 from the Andaman Sea at Koh Jum Island in Krabi province of Thailand for the study. Using GFSKLYFamide polyclonal antibody and Alexa 488-conjugated goat anti-rabbit IgG as primary and secondary antibodies, respectively, indirect immunofluorescence method and confocal microscope was used to localise GFSKLYFamide-like immunoreactivity in the female gonad of H. scabra. The results show GFSKLYFamide-like immunoreactivity being expressed in the sub-epithelial fibres of the coelomic epithelium. -
CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
J. Mar. Biol. Ass. UK (1958) 37, 7°5-752
J. mar. biol. Ass. U.K. (1958) 37, 7°5-752 Printed in Great Britain OBSERVATIONS ON LUMINESCENCE IN PELAGIC ANIMALS By J. A. C. NICOL The Plymouth Laboratory (Plate I and Text-figs. 1-19) Luminescence is very common among marine animals, and many species possess highly developed photophores or light-emitting organs. It is probable, therefore, that luminescence plays an important part in the economy of their lives. A few determinations of the spectral composition and intensity of light emitted by marine animals are available (Coblentz & Hughes, 1926; Eymers & van Schouwenburg, 1937; Clarke & Backus, 1956; Kampa & Boden, 1957; Nicol, 1957b, c, 1958a, b). More data of this kind are desirable in order to estimate the visual efficiency of luminescence, distances at which luminescence can be perceived, the contribution it makes to general back• ground illumination, etc. With such information it should be possible to discuss. more profitably such biological problems as the role of luminescence in intraspecific signalling, sex recognition, swarming, and attraction or re• pulsion between species. As a contribution to this field I have measured the intensities of light emitted by some pelagic species of animals. Most of the work to be described in this paper was carried out during cruises of R. V. 'Sarsia' and RRS. 'Discovery II' (Marine Biological Association of the United Kingdom and National Institute of Oceanography, respectively). Collections were made at various stations in the East Atlantic between 30° N. and 48° N. The apparatus for measuring light intensities was calibrated ashore at the Plymouth Laboratory; measurements of animal light were made at sea. -
Ctenophore Relationships and Their Placement As the Sister Group to All Other Animals
ARTICLES DOI: 10.1038/s41559-017-0331-3 Ctenophore relationships and their placement as the sister group to all other animals Nathan V. Whelan 1,2*, Kevin M. Kocot3, Tatiana P. Moroz4, Krishanu Mukherjee4, Peter Williams4, Gustav Paulay5, Leonid L. Moroz 4,6* and Kenneth M. Halanych 1* Ctenophora, comprising approximately 200 described species, is an important lineage for understanding metazoan evolution and is of great ecological and economic importance. Ctenophore diversity includes species with unique colloblasts used for prey capture, smooth and striated muscles, benthic and pelagic lifestyles, and locomotion with ciliated paddles or muscular propul- sion. However, the ancestral states of traits are debated and relationships among many lineages are unresolved. Here, using 27 newly sequenced ctenophore transcriptomes, publicly available data and methods to control systematic error, we establish the placement of Ctenophora as the sister group to all other animals and refine the phylogenetic relationships within ctenophores. Molecular clock analyses suggest modern ctenophore diversity originated approximately 350 million years ago ± 88 million years, conflicting with previous hypotheses, which suggest it originated approximately 65 million years ago. We recover Euplokamis dunlapae—a species with striated muscles—as the sister lineage to other sampled ctenophores. Ancestral state reconstruction shows that the most recent common ancestor of extant ctenophores was pelagic, possessed tentacles, was bio- luminescent and did not have separate sexes. Our results imply at least two transitions from a pelagic to benthic lifestyle within Ctenophora, suggesting that such transitions were more common in animal diversification than previously thought. tenophores, or comb jellies, have successfully colonized from species across most of the known phylogenetic diversity of nearly every marine environment and can be key species in Ctenophora. -
Genome and Ontogenetic-Based Transcriptomic Analyses of the Flesh Fly, Sarcophaga Bullata
GENOME REPORT Genome and Ontogenetic-Based Transcriptomic Analyses of the Flesh Fly, Sarcophaga bullata Ellen O. Martinson,*,1,2,3 Justin Peyton,†,2 Yogeshwar D. Kelkar,* Emily C. Jennings,‡ Joshua B. Benoit,‡ John H. Werren,*,4 and David L. Denlinger†,4 *Biology Department, University of Rochester, Rochester, NY 14627, †Departments of Evolution, Ecology and Organismal Biology and Entomology, Ohio State University, Columbus, OH 43210, and ‡Departments of Biological Sciences, University of Cincinnati, Cincinnati, OH 45221 ORCID ID: 0000-0001-9757-6679 (E.O.M.) ABSTRACT The flesh fly, Sarcophaga bullata, is a widely-used model for examining the physiology of KEYWORDS insect diapause, development, stress tolerance, neurobiology, and host-parasitoid interactions. Flies in Diptera this taxon are implicated in myiasis (larval infection of vertebrates) and feed on carrion, aspects that are Sarcophaga important in forensic studies. Here we present the genome of S. bullata, along with developmental- and bullata reproduction-based RNA-Seq analyses. We predict 15,768 protein coding genes, identify orthology in diapause relation to closely related flies, and establish sex and developmental-specific gene sets based on our host-parasitoid RNA-Seq analyses. Genomic sequences, predicted genes, and sequencing data sets have been depos- interactions ited at the National Center for Biotechnology Information. Our results provide groundwork for genomic ontogenesis studies that will expand the flesh fly’s utility as a model system. forensics stress tolerance Sarcophaga bullata Parker (Diptera: Sarcophagidae), sometimes re- in the laboratory, making them useful models for diapause, cold ferred to as Neobellieria bullata (but see Stamper et al., 2012), is a flesh tolerance, and other stress responses. -
Fira Code: Monospaced Font with Programming Ligatures
Personal Open source Business Explore Pricing Blog Support This repository Sign in Sign up tonsky / FiraCode Watch 282 Star 9,014 Fork 255 Code Issues 74 Pull requests 1 Projects 0 Wiki Pulse Graphs Monospaced font with programming ligatures 145 commits 1 branch 15 releases 32 contributors OFL-1.1 master New pull request Find file Clone or download lf- committed with tonsky Add mintty to the ligatures-unsupported list (#284) Latest commit d7dbc2d 16 days ago distr Version 1.203 (added `__`, closes #120) a month ago showcases Version 1.203 (added `__`, closes #120) a month ago .gitignore - Removed `!!!` `???` `;;;` `&&&` `|||` `=~` (closes #167) `~~~` `%%%` 3 months ago FiraCode.glyphs Version 1.203 (added `__`, closes #120) a month ago LICENSE version 0.6 a year ago README.md Add mintty to the ligatures-unsupported list (#284) 16 days ago gen_calt.clj Removed `/**` `**/` and disabled ligatures for `/*/` `*/*` sequences … 2 months ago release.sh removed Retina weight from webfonts 3 months ago README.md Fira Code: monospaced font with programming ligatures Problem Programmers use a lot of symbols, often encoded with several characters. For the human brain, sequences like -> , <= or := are single logical tokens, even if they take two or three characters on the screen. Your eye spends a non-zero amount of energy to scan, parse and join multiple characters into a single logical one. Ideally, all programming languages should be designed with full-fledged Unicode symbols for operators, but that’s not the case yet. Solution Download v1.203 · How to install · News & updates Fira Code is an extension of the Fira Mono font containing a set of ligatures for common programming multi-character combinations. -
Terrestrial and Marine Biological Resource Information
APPENDIX C Terrestrial and Marine Biological Resource Information Appendix C1 Resource Agency Coordination Appendix C2 Marine Biological Resources Report APPENDIX C1 RESOURCE AGENCY COORDINATION 1 The ICF terrestrial biological team coordinated with relevant resource agencies to discuss 2 sensitive biological resources expected within the terrestrial biological study area (BSA). 3 A summary of agency communications and site visits is provided below. 4 California Department of Fish and Wildlife: On July 30, 2020, ICF held a conference 5 call with Greg O’Connell (Environmental Scientist) and Corianna Flannery (Environmental 6 Scientist) to discuss Project design and potential biological concerns regarding the 7 Eureka Subsea Fiber Optic Cables Project (Project). Mr. O’Connell discussed the 8 importance of considering the western bumble bee. Ms. Flannery discussed the 9 importance of the hard ocean floor substrate and asked how the cable would be secured 10 to the ocean floor to reduce or eliminate scour. The western bumble bee has been 11 evaluated in the Biological Resources section of the main document, and direct and 12 indirect impacts are avoided. The Project Description describes in detail how the cable 13 would be installed on the ocean floor, the importance of the hard bottom substrate, and 14 the need for avoidance. 15 Consultation Outcomes: 16 • The Project was designed to avoid hard bottom substrate, and RTI Infrastructure 17 (RTI) conducted surveys of the ocean floor to ensure that proper routing of the 18 cable would occur. 19 • Ms. Flannery will be copied on all communications with the National Marine 20 Fisheries Service 21 California Department of Fish and Wildlife: On August 7, 2020, ICF held a conference 22 call with Greg O’Connell to discuss a site assessment and survey approach for the 23 western bumble bee. -
Profiles and Biological Values of Sea Cucumbers: a Mini Review Siti Fathiah Masre
Life Sciences, Medicine and Biomedicine, Vol 2 No 4 (2018) 25 Review Article Profiles and Biological Values of Sea Cucumbers: A Mini Review Siti Fathiah Masre Biomedical Science Programme, Faculty of Health Sciences, Universiti Kebangsaan Malaysia (UKM), 50300 Kuala Lumpur, Malaysia. https://doi.org/10.28916/lsmb.2.4.2018.25 Received 8 October 2018, Revisions received 19 November 2018, Accepted 23 November 2018, Available online 31 December 2018 Abstract Sea cucumbers, blind cylindrical marine invertebrates that live in the ocean intertidal beds have more than thousand species available of varying morphology and colours throughout the world. Sea cucumbers have long been exploited in traditional treatment as a source of natural medicinal compounds. Various nutritional and therapeutic values have been linked to this invertebrate. These creatures have been eaten since ancient times and purported as the most commonly consumed echinoderms. Some important biological activities of sea cucumbers including anti-hypertension, anti-inflammatory, anti-cancer, anti-asthmatic, anti-bacterial and wound healing. Thus, this short review comes with the principal aim to cover the profile, taxonomy, together with nutritional and medicinal properties of sea cucumbers. Keywords: sea cucumber; invertebrate; echinoderm; therapeutic; taxonomy. 1.0 Introduction Sea cucumbers are marine invertebrate under phylum Echinodermata (Kamarudin et al., 2017). This cylindrical invertebrate that lives throughout the worlds’ oceans bed is known as sea cucumber or ‘gamat’ in Malaysia (Kamarudin et al., 2017). There are more than 1200 sea cucumber species available of varying morphology and colours throughout the world (Oh et al., 2017). Within the coastal areas of Malaysia, sea cucumbers can be located in Semporna Island, Pangkor Island, Tioman Island, Langkawi Island and coastal areas within Terengganu. -
Identification of a Death-Scene Maggot Using Standardized Molecular
orensi f F c R o e l s a e n r a r u Raghavendra et al. J Forensic Res 2011, 2:6 c o h J Journal of Forensic Research DOI: 10.4172/2157-7145.1000133 ISSN: 2157-7145 Reserch Article Open Access Identification of a Death-scene Maggot using Standardized Molecular Methods: Sarcophagabullata Parker 1916 (Sarcophagidae) Out-numbers Blowflies (Calliphoridae) on an Urban Cadaver in Southeastern Texas Rekha Raghavendra1, Christopher P. Randle2 and Sibyl Rae Bucheli2* 1School of Medicine Case Western Reserve University, Cleveland OH, USA 2Department of Biological Sciences Sam Houston State University, Huntsville, TX, USA Abstract In forensic entomology,fly data including maggot age are frequently used to help estimate the time since death.Accurate identification of the maggot to species is critical for time since death estimations. However, within a family, maggots are notoriously difficult to identify to species.In this study, we employ phylogenetic datafrom the mtDNAgenes COI and COII to identify an unknown maggot to species (member of the family Sarcophagidae) harvested from a cadaver in June 2009 in Harrison County, Texas. The most closely related species to our unknown maggot was SarcophagabullataParker 1916, a somewhat common carrion-feeding species in southeastern United States that is now gaininggreater recognition as a forensically significant species. Keywords: Forensic entomology; case study; Sarcophagidae; species were collected despite law enforcement agents reporting the Sarcophagabullata Parker 1916 remains to be in a state of fresh/bloated decomposition.The unknown maggots were identified as members of the family Sarcophagidae Introduction using standard morphological features of the spiracular complex but Decomposition of a large mammalian carcass is greatly accelerated could not be further identified (Peterson 1960). -
Pycharm Reference Card.Pdf
Default Keymap Default Keymap Default Keymap Editing Compile and Run Usage Search Ctrl + Space Basic code completion (the name of any class, method Alt + Shift + F10 Select configuration and run Alt + F7 / Ctrl + F7 Find usages / Find usages in file or variable) Alt + Shift + F9 Select configuration and debug Ctrl + Shift + F7 Highlight usages in file Ctrl + Alt + Space Class name completion (the name of any project class Shift + F10 Run Ctrl + Alt + F7 Show usages independently of current imports) Shift + F9 Debug Refactoring Ctrl + Shift + Enter Complete statement Ctrl + Shift + F10 Run context configuration from editor Ctrl + P Parameter info (within method call arguments) F5 Copy Debugging Ctrl + Q Quick documentation lookup F6 Move Shift + F1 External Doc F8 Step over Alt + Delete Safe Delete Ctrl + mouse over code Brief Info F7 Step into Shift + F6 Rename Ctrl + F1 Show descriptions of error or warning at caret Shift + F8 Step out Ctrl + F6 Change Signature Alt + Insert Generate code... Alt + F9 Run to cursor Ctrl + Alt + N Inline Ctrl + O Override methods Alt + F8 Evaluate expression Ctrl + Alt + M Extract Method Ctrl + Alt + T Surround with... Ctrl + Alt + F8 Quick evaluate expression Ctrl + Alt + V Introduce Variable Ctrl + / Comment/uncomment with line comment F9 Resume program Ctrl + Alt + F Introduce Field Ctrl + Shift + / Comment/uncomment with block comment Ctrl + F8 Toggle breakpoint Ctrl + Alt + C Introduce Constant Ctrl + W Select successively increasing code blocks Ctrl + Shift + F8 View breakpoints Ctrl + Alt + P Introduce -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar