Quantum Monte Carlo for Vibrating Molecules
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An Overview of Quantum Monte Carlo Methods David M. Ceperley
An Overview of Quantum Monte Carlo Methods David M. Ceperley Department of Physics and National Center for Supercomputing Applications University of Illinois Urbana-Champaign Urbana, Illinois 61801 In this brief article, I introduce the various types of quantum Monte Carlo (QMC) methods, in particular, those that are applicable to systems in extreme regimes of temperature and pressure. We give references to longer articles where detailed discussion of applications and algorithms appear. MOTIVATION One does QMC for the same reason as one does classical simulations; there is no other method able to treat exactly the quantum many-body problem aside from the direct simulation method where electrons and ions are directly represented as particles, instead of as a “fluid” as is done in mean-field based methods. However, quantum systems are more difficult than classical systems because one does not know the distribution to be sampled, it must be solved for. In fact, it is not known today which quantum problems can be “solved” with simulation on a classical computer in a reasonable amount of computer time. One knows that certain systems, such as most quantum many-body systems in 1D and most bosonic systems are amenable to solution with Monte Carlo methods, however, the “sign problem” prevents making the same statement for systems with electrons in 3D. Some limitations or approximations are needed in practice. On the other hand, in contrast to simulation of classical systems, one does know the Hamiltonian exactly: namely charged particles interacting with a Coulomb potential. Given sufficient computer resources, the results can be of quite high quality and for systems where there is little reliable experimental data. -
Chapter 5 Quantum Monte Carlo
Chapter 5 Quantum Monte Carlo This chapter is devoted to the study of quatum many body systems using Monte Carlo techniques. We analyze two of the methods that belong to the large family of the quantum Monte Carlo techniques, namely the Path-Integral Monte Carlo (PIMC) and the Diffusion Monte Carlo (DMC, also named Green’s function Monte Carlo). In the first section we start by introducing PIMC. 5.1 Path Integrals in Quantum Statistical Mechan- ics In this section we introduce the path-integral description of the properties of quantum many-body systems. We show that path integrals permit to calculate the static prop- erties of systems of Bosons at thermal equilibrium by means of Monte Carlo methods. We consider a many-particle system described by the non-relativistic Hamiltonian Hˆ = Tˆ + Vˆ ; (5.1) in coordinate representation the kinetic operator Tˆ and the potential operator Vˆ are defined as: !2 N Tˆ = ∆ , and (5.2) −2m i i=1 ! Vˆ = V (R) . (5.3) In these equations ! is the Plank’s constant divided by 2π, m the particles mass, N the number of particles and the vector R (r1,...,rN ) describes their positions. We consider here systems in d dimensions, with≡ fixed number of particles, temperature T , contained in a volume V . In most case, the potential V (R) is determined by inter-particle interactions, in which case it can be written as the sum of pair contributions V (R)= v (r r ), where i<j i − j v(r) is the inter-particle potential; it can also be due to an external field, call it vext(r), " R r in which case it is just the sum of single particle contributions V ( )= i vex ( i). -
Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development
processes Review Molecular Dynamics Simulations in Drug Discovery and Pharmaceutical Development Outi M. H. Salo-Ahen 1,2,* , Ida Alanko 1,2, Rajendra Bhadane 1,2 , Alexandre M. J. J. Bonvin 3,* , Rodrigo Vargas Honorato 3, Shakhawath Hossain 4 , André H. Juffer 5 , Aleksei Kabedev 4, Maija Lahtela-Kakkonen 6, Anders Støttrup Larsen 7, Eveline Lescrinier 8 , Parthiban Marimuthu 1,2 , Muhammad Usman Mirza 8 , Ghulam Mustafa 9, Ariane Nunes-Alves 10,11,* , Tatu Pantsar 6,12, Atefeh Saadabadi 1,2 , Kalaimathy Singaravelu 13 and Michiel Vanmeert 8 1 Pharmaceutical Sciences Laboratory (Pharmacy), Åbo Akademi University, Tykistökatu 6 A, Biocity, FI-20520 Turku, Finland; ida.alanko@abo.fi (I.A.); rajendra.bhadane@abo.fi (R.B.); parthiban.marimuthu@abo.fi (P.M.); atefeh.saadabadi@abo.fi (A.S.) 2 Structural Bioinformatics Laboratory (Biochemistry), Åbo Akademi University, Tykistökatu 6 A, Biocity, FI-20520 Turku, Finland 3 Faculty of Science-Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, 3584 CH Utrecht, The Netherlands; [email protected] 4 Swedish Drug Delivery Forum (SDDF), Department of Pharmacy, Uppsala Biomedical Center, Uppsala University, 751 23 Uppsala, Sweden; [email protected] (S.H.); [email protected] (A.K.) 5 Biocenter Oulu & Faculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 7 A, FI-90014 Oulu, Finland; andre.juffer@oulu.fi 6 School of Pharmacy, University of Eastern Finland, FI-70210 Kuopio, Finland; maija.lahtela-kakkonen@uef.fi (M.L.-K.); tatu.pantsar@uef.fi -
Department of Physics Scheme of Instruction
Department Of Physics OsmaniaUniversity Scheme of Instruction and Syllabus B.Sc Physics (I – VI Semesters) Under CBCS scheme (from the academic year 2016-2017) 1 B.Sc. PHYSICS SYLLABUS UNDER CBCS SCHEME SCHEME OF INSTRUCTION Semester Paper [ Theory and Practical ] Instructions Marks Credits Hrs/week I sem Paper – I : Mechanics 100 4 4 Practicals – I : Mechanics 3 50 1 II sem Paper – II: Waves and Oscillations 100 4 4 Practicals – II : Waves and Oscillations 3 50 1 III sem Paper – III : Thermodynamics 100 4 4 Practicals – III : Thermodynamics 3 50 1 IV sem Paper – IV : Optics 4 100 4 Practicals – IV :Optics 3 50 1 Paper –V : Electromagnetism 3 100 3 Practicals – V: Electromagnetism 3 50 1 V sem Paper – VI : Elective – I 100 3 Solid state physics/ 3 Quantum Mechanics and Applications Practicals – VI : Elective – I Practical 50 1 Solid state physics/ 3 Quantum Mechanics and Applications Paper – VII : Modern Physics 3 100 3 Practical – VII : Modern Physics Lab 3 50 1 VI sem Paper – VIII : Elective – II 100 3 Basic Electronics/ 3 Physics of Semiconductor Devices Practicals – VIII : Elective – II Practical 50 1 Basic Electronics/ 3 Physics of Semiconductor Devices Total Credits 36 2 B.Sc. (Physics)Semester I-Theory Syllabus 56hrs Paper – I:Mechanics (W.E.F the academic year 2016-2017) (CBCS) Unit – I 1. Vector Analysis (14) Scalar and vector fields, gradient of a scalar field and its physical significance.Divergence and curl of a vector field and related problems.Vector integration, line, surface and volume integrals.Stokes, Gauss and Greens theorems- simple applications. Unit – II 2. -
Few-Body Systems in Condensed Matter Physics
Few-body systems in condensed matter physics. Roman Ya. Kezerashvili1,2 1Physics Department, New York City College of Technology, The City University of New York, Brooklyn, NY 11201, USA 2The Graduate School and University Center, The City University of New York, New York, NY 10016, USA This review focuses on the studies and computations of few-body systems of electrons and holes in condensed matter physics. We analyze and illustrate the application of a variety of methods for description of two- three- and four-body excitonic complexes such as an exciton, trion and biexciton in three-, two- and one-dimensional configuration spaces in various types of materials. We discuss and analyze the contributions made over the years to understanding how the reduction of dimensionality affects the binding energy of excitons, trions and biexcitons in bulk and low- dimensional semiconductors and address the challenges that still remain. I. INTRODUCTION Over the past 50 years, the physics of few-body systems has received substantial development. Starting from the mid-1950’s, the scientific community has made great progress and success towards the devel- opment of methods of theoretical physics for the solution of few-body problems in physics. In 1957, Skornyakov and Ter-Martirosyan [1] solved the quantum three-body problem and derived equations for the determination of the wave function of a system of three identical particles (fermions) in the limiting case of zero-range forces. The integral equation approach [1] was generalized by Faddeev [2] to include finite and long range interactions. It was shown that the eigenfunctions of the Hamiltonian of a three- particle system with pair interaction can be represented in a natural fashion as the sum of three terms, for each of which there exists a coupled set of equations. -
Determining Equilibrium Structures and Potential Energy Functions for Diatomic Molecules Robert J
Chapter 6 Determining Equilibrium Structures and Potential Energy Functions for Diatomic Molecules Robert J. Le Roy CONTENTS 1 6.0 Introduction 6.1 Quantum Mechanics of Vibration and Rotation 6.2 Semiclassical Methods 6.2.1 The semiclassical quantization condition 6.2.2 The Rydberg-Klein-Rees (RKR) inversion procedure 6.2.3 Near-dissociation theory (NDT) 6.2.4 Conclusions regarding semiclassical methods 6.3 Quantum-Mechanical Direct-Potential-Fit Methods 6.3.1 Overview and background 6.3.2 Potential function forms 6.3.2 A Polynomial Potential Function Forms 6.3.2 B The Expanded Morse Oscillator (EMO) Potential Form and the Importance of the Definition of the Expansion Variable 6.3.2 C The Morse/Long-Range (MLR) Potential Form 6.3.2 D The Spline-Pointwise Potential Form 6.3.3 Initial trial parameters for direct potential fits 6.4 Born-Oppenheimer Breakdown Effects 6.5 Concluding Remarks Appendix: What terms contribute to a long-range potential? Exercises References Because the Hamiltonian governing the vibration-rotation motion of diatomic molecules is essen- tially one dimensional, the theory is relatively tractable, and analyses of experimental data can be much more sophisticated than is possible for polyatomics. It is therefore possible to deter- mine equilibrium structures to very high precision – up to 10−6 A˚ – and often also to determine accurate potential energy functions spanning the whole potential energy well. The traditional way of doing this involves first determining the v-dependence of the vibrational level energies Gv and inertial rotational constants Bv, and then using a semiclassical inversion procedure to 1 Chapter 6, pp. -
Quantum Monte Carlo Analysis of Exchange and Correlation in the Strongly Inhomogeneous Electron Gas
VOLUME 87, NUMBER 3 PHYSICAL REVIEW LETTERS 16JULY 2001 Quantum Monte Carlo Analysis of Exchange and Correlation in the Strongly Inhomogeneous Electron Gas Maziar Nekovee,1,* W. M. C. Foulkes,1 and R. J. Needs2 1The Blackett Laboratory, Imperial College, Prince Consort Road, London SW7 2BZ, United Kingdom 2Cavendish Laboratory, Madingley Road, Cambridge CB3 0HE, United Kingdom (Received 31 July 2000; published 25 June 2001) We use the variational quantum Monte Carlo method to calculate the density-functional exchange- correlation hole nxc, the exchange-correlation energy density exc, and the total exchange-correlation energy Exc of several strongly inhomogeneous electron gas systems. We compare our results with the local density approximation and the generalized gradient approximation. It is found that the nonlocal contributions to exc contain an energetically significant component, the magnitude, shape, and sign of which are controlled by the Laplacian of the electron density. DOI: 10.1103/PhysRevLett.87.036401 PACS numbers: 71.15.Mb, 71.10.–w, 71.45.Gm The Kohn-Sham density-functional theory (DFT) [1] rs 2a0 (approximately the same as for Al). The strong shows that it is possible to calculate the ground-state prop- density modulations were one dimensional and periodic, erties of interacting many-electron systems by solving only with a roughly sinusoidal profile. Three different modula- 0 0 one-electron Schrödinger-like equations. The results are tion wave vectors q # 2.17kF were investigated, where kF exact in principle, but in practice it is necessary to ap- is the Fermi wave vector corresponding to n0. The strong proximate the unknown exchange-correlation (XC) energy variation of n͑r͒ on the scale of the inverse local Fermi ͓ ͔ 21 2 21͞3 functional, Exc n , which expresses the many-body effects wave vector kF͑r͒ ͓3p n͑r͔͒ results in a strik- ͑ ͒ in terms of the electron density n r . -
First Principles Investigation Into the Atom in Jellium Model System
First Principles Investigation into the Atom in Jellium Model System Andrew Ian Duff H. H. Wills Physics Laboratory University of Bristol A thesis submitted to the University of Bristol in accordance with the requirements of the degree of Ph.D. in the Faculty of Science Department of Physics March 2007 Word Count: 34, 000 Abstract The system of an atom immersed in jellium is solved using density functional theory (DFT), in both the local density (LDA) and self-interaction correction (SIC) approxima- tions, Hartree-Fock (HF) and variational quantum Monte Carlo (VQMC). The main aim of the thesis is to establish the quality of the LDA, SIC and HF approximations by com- paring the results obtained using these methods with the VQMC results, which we regard as a benchmark. The second aim of the thesis is to establish the suitability of an atom in jellium as a building block for constructing a theory of the full periodic solid. A hydrogen atom immersed in a finite jellium sphere is solved using the methods listed above. The immersion energy is plotted against the positive background density of the jellium, and from this curve we see that DFT over-binds the electrons as compared to VQMC. This is consistent with the general over-binding one tends to see in DFT calculations. Also, for low values of the positive background density, the SIC immersion energy gets closer to the VQMC immersion energy than does the LDA immersion energy. This is consistent with the fact that the electrons to which the SIC is applied are becoming more localised at these low background densities and therefore the SIC theory is expected to out-perform the LDA here. -
Ab Initio Molecular Dynamics of Water by Quantum Monte Carlo
Ab initio molecular dynamics of water by quantum Monte Carlo Author: Ye Luo Supervisor: Prof. Sandro Sorella A thesis submitted for the degree of Doctor of Philosophy October 2014 Acknowledgments I would like to acknowledge first my supervisor Prof. Sandro Sorella. During the years in SISSA, he guided me in exploring the world of QMC with great patience and enthusiasm. He's not only a master in Physics but also an expert in high performance computing. He never exhausts new ideas and is always advancing the research at the light speed. For four years, I had an amazing journey with him. I would like to appreciate Dr. Andrea Zen, Prof. Leonardo Guidoni and my classmate Guglielmo Mazzola. I really learned a lot from the collaboration on various projects we did. I would like to thank Michele Casula and W.M.C. Foulkes who read and correct my thesis and also give many suggestive comments. I would like to express the gratitude to my parents who give me unlimited support even though they are very far from me. Without their unconditional love, I can't pass through the hardest time. I feel very sorry for them because I went home so few times in the previous years. Therefore, I would like to dedicate this thesis to them. I remember the pleasure with my friends in Trieste who are from all over the world. Through them, I have access to so many kinds of food and culture. They help me when I meet difficulties and they wipe out my loneliness by sharing the joys and tears of my life. -
Introduction to the Diffusion Monte Carlo Method
Introduction to the Diffusion Monte Carlo Method Ioan Kosztin, Byron Faber and Klaus Schulten Department of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, Urbana, Illinois 61801 (August 25, 1995) A self–contained and tutorial presentation of the diffusion Monte Carlo method for determining the ground state energy and wave function of quantum systems is provided. First, the theoretical basis of the method is derived and then a numerical algorithm is formulated. The algorithm is applied to determine the ground state of the harmonic oscillator, the Morse oscillator, the hydrogen + atom, and the electronic ground state of the H2 ion and of the H2 molecule. A computer program on which the sample calculations are based is available upon request. E-print: physics/9702023 I. INTRODUCTION diffusion equation. The diffusion–reaction equation aris- ing can be solved by employing stochastic calculus as it 1,2 The Schr¨odinger equation provides the accepted de- was first suggested by Fermi around 1945 . Indeed, the scription for microscopic phenomena at non-relativistic imaginary time Schr¨odinger equation can be solved by energies. Many molecular and solid state systems simulating random walks of particles which are subject to are governed by this equation. Unfortunately, the birth/death processes imposed by the source/sink term. Schr¨odinger equation can be solved analytically only in a The probability distribution of the random walks is iden- few highly idealized cases; for most realistic systems one tical to the wave function. This is possible only for wave needs to resort to numerical descriptions. In this paper functions which are positive everywhere, a feature, which we want to introduce the reader to a relatively recent nu- limits the range of applicability of the DMC method. -
Arxiv:Physics/0609191V1 [Physics.Comp-Ph] 22 Sep 2006 Ot Al Ihteueo Yhn Ial,W Round VIII
MontePython: Implementing Quantum Monte Carlo using Python J.K. Nilsen1,2 1 USIT, Postboks 1059 Blindern, N-0316 Oslo, Norway 2 Department of Physics, University of Oslo, N-0316 Oslo, Norway We present a cross-language C++/Python program for simulations of quantum mechanical sys- tems with the use of Quantum Monte Carlo (QMC) methods. We describe a system for which to apply QMC, the algorithms of variational Monte Carlo and diffusion Monte Carlo and we describe how to implement theses methods in pure C++ and C++/Python. Furthermore we check the effi- ciency of the implementations in serial and parallel cases to show that the overhead using Python can be negligible. I. INTRODUCTION II. THE SYSTEM In scientific programming there has always been a strug- Quantum Monte Carlo (QMC) has a wide range of appli- gle between computational efficiency and programming cations, for example studies of Bose-Einstein condensates efficiency. On one hand, we want a program to go as of dilute atomic gases (bosonic systems) [4] and studies fast as possible, resorting to low-level programming lan- of so-called quantum dots (fermionic systems) [5], elec- guages like FORTRAN77 and C which can be difficult to trons confined between layers in semi-conductors. In this read and even harder to debug. On the other hand, we paper we will focus on a model which is meant to repro- want the programming process to be as efficient as pos- duce the results from an experiment by Anderson & al. sible, turning to high-level software like Matlab, Octave, [6]. Anderson & al. -
Quantum Monte Carlo Methods on Lattices: the Determinantal Approach
John von Neumann Institute for Computing Quantum Monte Carlo Methods on Lattices: The Determinantal Approach Fakher F. Assaad published in Quantum Simulations of Complex Many-Body Systems: From Theory to Algorithms, Lecture Notes, J. Grotendorst, D. Marx, A. Muramatsu (Eds.), John von Neumann Institute for Computing, Julich,¨ NIC Series, Vol. 10, ISBN 3-00-009057-6, pp. 99-156, 2002. c 2002 by John von Neumann Institute for Computing Permission to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. To copy otherwise requires prior specific permission by the publisher mentioned above. http://www.fz-juelich.de/nic-series/volume10 Quantum Monte Carlo Methods on Lattices: The Determinantal Approach Fakher F. Assaad 1 Institut fur¨ Theoretische Physik III, Universitat¨ Stuttgart Pfaffenwaldring 57, 70550 Stuttgart, Germany 2 Max Planck Institute for Solid State Research Heisenbergstr. 1, 70569, Stuttgart, Germany E-mail: [email protected] We present a review of the auxiliary field (i.e. determinantal) Quantum Monte Carlo method applied to various problems of correlated electron systems. The ground state projector method, the finite temperature approach as well as the Hirsch-Fye impurity algorithm are described in details. It is shown how to apply those methods to a variety of models: Hubbard Hamiltonians, periodic Anderson model, Kondo lattice and impurity problems, as well as hard core bosons and the Heisenberg model. An introduction to the world-line method with loop upgrades as well as an appendix on the Monte Carlo method is provided.