Resolving the Coryneliomycetidae Within Eurotiomycetes
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On Corylus Avellana (Fagales) from Italy
Biodiversity Data Journal 8: e55957 doi: 10.3897/BDJ.8.e55957 Taxonomic Paper A new genus of Bambusicolaceae (Pleosporales) on Corylus avellana (Fagales) from Italy Subodini Nuwanthika Wijesinghe‡,§,|, Yong Wang ‡, Erio Camporesi¶, Dhanushka Nadeeshan Wanasinghe#, Saranyaphat Boonmee§,|, Kevin David Hyde§,#,¤ ‡ Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang, Guizhou Province, 550025, China § Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand | School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand ¶ A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy # CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China ¤ Innovative Institute of Plant Health, Zhongkai University of Agriculture and Engineering, Haizhu District, Guangzhou 510225, China Corresponding author: Yong Wang ([email protected]) Academic editor: Danny Haelewaters Received: 29 Jun 2020 | Accepted: 16 Jul 2020 | Published: 19 Aug 2020 Citation: Wijesinghe SN, Wang Y, Camporesi E, Wanasinghe DN, Boonmee S, Hyde KD (2020) A new genus of Bambusicolaceae (Pleosporales) on Corylus avellana (Fagales) from Italy. Biodiversity Data Journal 8: e55957. https://doi.org/10.3897/BDJ.8.e55957 Abstract Background In this study, we introduce Corylicola gen. nov. in the family of Bambusicolaceae (Pleosporales), to accommodate Corylicola italica sp. nov. The new species was isolated from dead branches of Corylus avellana (common hazel) in Italy. The discovery of this new genus with both sexual and asexual characters will contribute to expand the knowledge and taxonomic framework of Bambusicolaceae. New information Corylicola gen. nov. has similar morphological characters compared to other genera of Bambusicolaceae. -
Genomic Analysis of Ant Domatia-Associated Melanized Fungi (Chaetothyriales, Ascomycota) Leandro Moreno, Veronika Mayer, Hermann Voglmayr, Rumsais Blatrix, J
Genomic analysis of ant domatia-associated melanized fungi (Chaetothyriales, Ascomycota) Leandro Moreno, Veronika Mayer, Hermann Voglmayr, Rumsais Blatrix, J. Benjamin Stielow, Marcus Teixeira, Vania Vicente, Sybren de Hoog To cite this version: Leandro Moreno, Veronika Mayer, Hermann Voglmayr, Rumsais Blatrix, J. Benjamin Stielow, et al.. Genomic analysis of ant domatia-associated melanized fungi (Chaetothyriales, Ascomycota). Mycolog- ical Progress, Springer Verlag, 2019, 18 (4), pp.541-552. 10.1007/s11557-018-01467-x. hal-02316769 HAL Id: hal-02316769 https://hal.archives-ouvertes.fr/hal-02316769 Submitted on 15 Oct 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Mycological Progress (2019) 18:541–552 https://doi.org/10.1007/s11557-018-01467-x ORIGINAL ARTICLE Genomic analysis of ant domatia-associated melanized fungi (Chaetothyriales, Ascomycota) Leandro F. Moreno1,2,3 & Veronika Mayer4 & Hermann Voglmayr5 & Rumsaïs Blatrix6 & J. Benjamin Stielow3 & Marcus M. Teixeira7,8 & Vania A. Vicente3 & Sybren de Hoog1,2,3,9 Received: 20 August 2018 /Revised: 16 December 2018 /Accepted: 19 December 2018 # The Author(s) 2019 Abstract Several species of melanized (Bblack yeast-like^) fungi in the order Chaetothyriales live in symbiotic association with ants inhabiting plant cavities (domatia) or with ants that use carton-like material for the construction of nests and tunnels. -
Keratinases and Microbial Degradation of Keratin
Available online a t www.pelagiaresearchlibrary.com Pelagia Research Library Advances in Applied Science Research, 2015, 6(2):74-82 ISSN: 0976-8610 CODEN (USA): AASRFC Keratinases and microbial degradation of Keratin Itisha Singh 1 and R. K. S. Kushwaha 2 1Department of Microbiology, Saaii College of Medical Sciences and Technology, Chaubepur, Kanpur 2Shri Shakti College, Harbaspur, Ghatampur, Kanpur ______________________________________________________________________________________________ ABSTRACT The present review deals with fungal keratinases including that of dermatophytes. Bacterial keratinases were also included. Temperature and substrate relationship keratinase production has also been discussed. Keratin degradation and industrial involvement of keratinase producing fungi is also reviewed. Key words : Keratinase, keratin, degradation, fungi. ______________________________________________________________________________________________ INTRODUCTION Keratin is an insoluble macromolecule requiring the secretion of extra cellular enzymes for biodegradation to occur. Keratin comprises long polypeptide chains, which are resistant to the activity of non-substrate-specific proteases. Adjacent chains are linked by disulphide bonds thought responsible for the stability and resistance to degradation of keratin (Safranek and Goos, 1982). The degradation of keratinous material is important medically and agriculturally (Shih, 1993; Matsumoto, 1996). Secretion of keratinolytic enzymes is associated with dermatophytic fungi, for which keratin -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
Multi-Gene Phylogeny of Jattaea Bruguierae, a Novel Asexual Morph from Bruguiera Cylindrica
Studies in Fungi 2 (1): 235–245 (2017) www.studiesinfungi.org ISSN 2465-4973 Article Doi 10.5943/sif/ 2/1/27 Copyright © Mushroom Research Foundation Multi-gene phylogeny of Jattaea bruguierae, a novel asexual morph from Bruguiera cylindrica Dayarathne MC1,2, Abeywickrama P1,2,3, Jones EBG4, Bhat DJ5,6, Chomnunti P1,2 and Hyde KD2,3,4 1 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand. 2 School of Science, Mae Fah Luang University, Chiang Rai57100, Thailand. 3 Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences. 4 Department of Botany and Microbiology, King Saudi University, Riyadh, Saudi Arabia. 5 No. 128/1-J, Azad Housing Society, Curca, P.O. Goa Velha 403108, India. 6 Formerly, Department of Botany, Goa University, Goa 403 206, India. Dayarathne MC, Abeywickrama P, Jones EBG, Bhat DJ, Chomnunti P, Hyde KD 2017 – Multi- gene phylogeny of Jattaea bruguierae, a novel asexual morph from Bruguiera cylindrica. Studies in Fungi 2(1), 235–245, Doi 10.5943/sif/2/1/27 Abstract During our survey on marine-based ascomycetes of southern Thailand, fallen mangrove twigs were collected from the intertidal zones. Those specimens yielded a novel asexual morph of Jattaea (Calosphaeriaceae, Calosphaeriales), Jattaea bruguierae, which is confirmed as a new species by morphological characteristics such as nature and measurements of conidia and conidiophores, as well as a multigene analysis based on combined LSU, SSU, ITS and β-tubulin sequence data. Jattaea species are abundantly found from wood in terrestrial environments, while the asexual morphs are mostly reported from axenic cultures. -
Ceramothyrium Chiangraiense, a Novel Species of Chaetothyriales (Eurotiomycetes) from Ficus Sp
Asian Journal of Mycology 2(1): 269–280 (2019) ISSN 2651-1339 www.asianjournalofmycology.org Article Doi 10.5943/ajom/2/1/17 Ceramothyrium chiangraiense, a novel species of Chaetothyriales (Eurotiomycetes) from Ficus sp. in Thailand Wijesinghe SN1,2, Dayarathne MC1,2,3, Maharachchikumbura SSN4, Wanasinghe 3 1,2,3 DN and Hyde KD 1 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2 School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3 Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 4 School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731, People’s Republic of China Wijesinghe SN, Dayarathne MC, Maharachchikumbura SSN, Wanasinghe DN, Hyde KD 2019 – Ceramothyrium chiangraiense, a novel species of Chaetothyriales (Eurotiomycetes) from Ficus sp. in Thailand. Asian Journal of Mycology 2(1), 269–280, Doi 10.5943/ajom/2/1/17 Abstract In our investigation of epifoliar fungi, a novel species of Ceramothyrium; C. chiangraiense is isolated from the living leaves of Ficus sp. in Thailand. Genus Ceramothyrium is characterized by the ascomata covered with pellicle mycelium and the circumferential space around the maturing ascomata, bitunicate asci and phragmospores which lack setae. The new species resembles genus Ceramothyrium by its ascomata with superficial mycelial pellicle over the fruiting structures and scattered ascomata that cupulate when dry and 8-spored, bitunicate asci which contain hyaline, pluriseptate ascospores. We have processed the phylogeny based on Maximum Likelihood (ML) and Bayesian (BI) analyses using combined ITS and LSU sequence data. -
Black Fungal Extremes
Studies in Mycology 61 (2008) Black fungal extremes Edited by G.S. de Hoog and M. Grube CBS Fungal Biodiversity Centre, Utrecht, The Netherlands An institute of the Royal Netherlands Academy of Arts and Sciences Black fungal extremes STUDIE S IN MYCOLOGY 61, 2008 Studies in Mycology The Studies in Mycology is an international journal which publishes systematic monographs of filamentous fungi and yeasts, and in rare occasions the proceedings of special meetings related to all fields of mycology, biotechnology, ecology, molecular biology, pathology and systematics. For instructions for authors see www.cbs.knaw.nl. EXECUTIVE EDITOR Prof. dr Robert A. Samson, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] LAYOUT EDITOR S Manon van den Hoeven-Verweij, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Kasper Luijsterburg, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] SCIENTIFIC EDITOR S Prof. dr Uwe Braun, Martin-Luther-Universität, Institut für Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle, Germany. E-mail: [email protected] Prof. dr Pedro W. Crous, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Prof. dr David M. Geiser, Department of Plant Pathology, 121 Buckhout Laboratory, Pennsylvania State University, University Park, PA, U.S.A. 16802. E-mail: [email protected] Dr Lorelei L. Norvell, Pacific Northwest Mycology Service, 6720 NW Skyline Blvd, Portland, OR, U.S.A. -
Culturing and Direct DNA Extraction Find Different Fungi From
Research CulturingBlackwell Publishing Ltd. and direct DNA extraction find different fungi from the same ericoid mycorrhizal roots Tamara R. Allen1, Tony Millar1, Shannon M. Berch2 and Mary L. Berbee1 1Department of Botany, The University of British Columbia, Vancouver BC, V6T 1Z4, Canada; 2Ministry of Forestry, Research Branch Laboratory, 4300 North Road, Victoria, BC V8Z 5J3, Canada Summary Author for correspondence: • This study compares DNA and culture-based detection of fungi from 15 ericoid Mary L. Berbee mycorrhizal roots of salal (Gaultheria shallon), from Vancouver Island, BC Canada. Tel: (604) 822 2019 •From the 15 roots, we PCR amplified fungal DNAs and analyzed 156 clones that Fax: (604) 822 6809 Email: [email protected] included the internal transcribed spacer two (ITS2). From 150 different subsections of the same roots, we cultured fungi and analyzed their ITS2 DNAs by RFLP patterns Received: 28 March 2003 or sequencing. We mapped the original position of each root section and recorded Accepted: 3 June 2003 fungi detected in each. doi: 10.1046/j.1469-8137.2003.00885.x • Phylogenetically, most cloned DNAs clustered among Sebacina spp. (Sebaci- naceae, Basidiomycota). Capronia sp. and Hymenoscyphus erica (Ascomycota) pre- dominated among the cultured fungi and formed intracellular hyphal coils in resynthesis experiments with salal. •We illustrate patterns of fungal diversity at the scale of individual roots and com- pare cloned and cultured fungi from each root. Indicating a systematic culturing detection bias, Sebacina DNAs predominated in 10 of the 15 roots yet Sebacina spp. never grew from cultures from the same roots or from among the > 200 ericoid mycorrhizal fungi previously cultured from different roots from the same site. -
Phylogenetic Reconstruction of the Calosphaeriales and Togniniales Using Five Genes and Predicted RNA Secondary Structures of ITS, and Flabellascus Tenuirostris Gen
RESEARCH ARTICLE Phylogenetic Reconstruction of the Calosphaeriales and Togniniales Using Five Genes and Predicted RNA Secondary Structures of ITS, and Flabellascus tenuirostris gen. et sp. nov. Martina Réblová1*, Walter M. Jaklitsch2,3, Kamila Réblová4,5, Václav Štěpánek6 1 Department of Taxonomy, Institute of Botany of the Academy of Sciences of the Czech Republic, Průhonice, Czech Republic, 2 Department of Forest and Soil Sciences, Forest Pathology and Forest Protection, Institute of Forest Entomology, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria, 3 Department of Botany and Biodiversity Research, Division of Systematic and Evolutionary Botany, University of Vienna, Vienna, Austria, 4 Faculty of Medicine, Masaryk University, Brno, Czech Republic, 5 Central European Institute of Technology, Masaryk University, Brno, Czech Republic, 6 Laboratory of Enzyme Technology, Institute of Microbiology of the Academy of Sciences of the Czech OPEN ACCESS Republic, Prague, Czech Republic Citation: Réblová M, Jaklitsch WM, Réblová K, * [email protected] Štěpánek V (2015) Phylogenetic Reconstruction of the Calosphaeriales and Togniniales Using Five Genes and Predicted RNA Secondary Structures of ITS, and Flabellascus tenuirostris gen. et sp. nov. Abstract PLoS ONE 10(12): e0144616. doi:10.1371/journal. pone.0144616 The Calosphaeriales is revisited with new collection data, living cultures, morphological studies of ascoma centrum, secondary structures of the internal transcribed spacer (ITS) Editor: Tamás Papp, University of Szeged, HUNGARY rDNA and phylogeny based on novel DNA sequences of five nuclear ribosomal and protein- coding loci. Morphological features, molecular evidence and information from predicted Received: September 9, 2015 RNA secondary structures of ITS converged upon robust phylogenies of the Calosphaer- Accepted: November 20, 2015 iales and Togniniales. -
Fungal Allergy and Pathogenicity 20130415 112934.Pdf
Fungal Allergy and Pathogenicity Chemical Immunology Vol. 81 Series Editors Luciano Adorini, Milan Ken-ichi Arai, Tokyo Claudia Berek, Berlin Anne-Marie Schmitt-Verhulst, Marseille Basel · Freiburg · Paris · London · New York · New Delhi · Bangkok · Singapore · Tokyo · Sydney Fungal Allergy and Pathogenicity Volume Editors Michael Breitenbach, Salzburg Reto Crameri, Davos Samuel B. Lehrer, New Orleans, La. 48 figures, 11 in color and 22 tables, 2002 Basel · Freiburg · Paris · London · New York · New Delhi · Bangkok · Singapore · Tokyo · Sydney Chemical Immunology Formerly published as ‘Progress in Allergy’ (Founded 1939) Edited by Paul Kallos 1939–1988, Byron H. Waksman 1962–2002 Michael Breitenbach Professor, Department of Genetics and General Biology, University of Salzburg, Salzburg Reto Crameri Professor, Swiss Institute of Allergy and Asthma Research (SIAF), Davos Samuel B. Lehrer Professor, Clinical Immunology and Allergy, Tulane University School of Medicine, New Orleans, LA Bibliographic Indices. This publication is listed in bibliographic services, including Current Contents® and Index Medicus. Drug Dosage. The authors and the publisher have exerted every effort to ensure that drug selection and dosage set forth in this text are in accord with current recommendations and practice at the time of publication. However, in view of ongoing research, changes in government regulations, and the constant flow of information relating to drug therapy and drug reactions, the reader is urged to check the package insert for each drug for any change in indications and dosage and for added warnings and precautions. This is particularly important when the recommended agent is a new and/or infrequently employed drug. All rights reserved. No part of this publication may be translated into other languages, reproduced or utilized in any form or by any means electronic or mechanical, including photocopying, recording, microcopy- ing, or by any information storage and retrieval system, without permission in writing from the publisher. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Effects of Growth Media on the Diversity of Culturable Fungi from Lichens
molecules Article Effects of Growth Media on the Diversity of Culturable Fungi from Lichens Lucia Muggia 1,*,†, Theodora Kopun 2,† and Martin Grube 2 1 Department of Life Sciences, University of Trieste, via Giorgieri 10, 34127 Trieste, Italy 2 Institute of Plant Science, Karl-Franzens University of Graz, Holteigasse 6, 8010 Graz, Austria; [email protected] (T.K.); [email protected] (M.G.) * Correspondence: [email protected] or [email protected]; Tel.: +39-04-0558-8825 † These authors contributed equally to the work. Academic Editor: Joel Boustie Received: 1 March 2017; Accepted: 11 May 2017; Published: 17 May 2017 Abstract: Microscopic and molecular studies suggest that lichen symbioses contain a plethora of associated fungi. These are potential producers of novel bioactive compounds, but strains isolated on standard media usually represent only a minor subset of these fungi. By using various in vitro growth conditions we are able to modulate and extend the fraction of culturable lichen-associated fungi. We observed that the presence of iron, glucose, magnesium and potassium in growth media is essential for the successful isolation of members from different taxonomic groups. According to sequence data, most isolates besides the lichen mycobionts belong to the classes Dothideomycetes and Eurotiomycetes. With our approach we can further explore the hidden fungal diversity in lichens to assist in the search of novel compounds. Keywords: Dothideomycetes; Eurotiomycetes; Leotiomycetes; nuclear ribosomal subunits DNA; nutrients; Sordariomycetes 1. Introduction Lichens are self-sustaining symbiotic associations of specialized fungi (the mycobionts), and green algae or cyanobacteria (the photobionts), which are located extracellularly within a matrix of fungal hyphae and from which the fungi derive carbon nutrition [1].