DOCSLIB.ORG

Singularity User Guide Release 3.7

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Singularity User Guide Release 3.7 Singularity User Guide Release 3.7 Singularity Project Contributors Nov 24, 2020 CONTENTS 1 Getting Started & Background Information3 1.1 Introduction to Singularity........................................3 1.2 Quick Start................................................5 1.3 Security in Singularity.......................................... 15 2 Building Containers 19 2.1 Build a Container............................................. 19 2.2 Definition Files.............................................. 23 2.3 Build Environment............................................ 34 2.4 Support for Docker and OCI....................................... 38 2.5 Fakeroot feature............................................. 79 3 Signing & Encryption 83 3.1 Signing and Verifying Containers.................................... 83 3.2 Key commands.............................................. 88 3.3 Encrypted Containers.......................................... 90 4 Sharing & Online Services 95 4.1 Remote Endpoints............................................ 95 4.2 Cloud Library.............................................. 103 5 Advanced Usage 109 5.1 Bind Paths and Mounts.......................................... 109 5.2 Persistent Overlays............................................ 115 5.3 Running Services............................................. 118 5.4 Environment and Metadata........................................ 128 5.5 OCI Runtime Support.......................................... 139 5.6 Plugins.................................................. 154 5.7 Security Options............................................. 156 5.8 Network virtualization.......................................... 160 5.9 Limiting container resources with cgroups............................... 162 5.10 Singularity and MPI applications.................................... 166 5.11 GPU Support (NVIDIA CUDA & AMD ROCm)............................ 173 6 Get Involved 179 6.1 Contributing............................................... 179 7 Reference 183 7.1 Appendix................................................. 183 7.2 Command Line Interface......................................... 197 7.3 License.................................................. 269 i ii Singularity User Guide, Release 3.7 Welcome to the Singularity User Guide! This guide aims to give an introduction to Singularity, brief installation instructions, and cover topics relevant to users building and running containers. For a detailed guide to installation and configuration, please see the separate Admin Guide for this version of Singu- larity at https://sylabs.io/guides/3.7/admin-guide/. CONTENTS 1 Singularity User Guide, Release 3.7 2 CONTENTS CHAPTER ONE GETTING STARTED & BACKGROUND INFORMATION 1.1 Introduction to Singularity Singularity is a container platform. It allows you to create and run containers that package up pieces of software in a way that is portable and reproducible. You can build a container using Singularity on your laptop, and then run it on many of the largest HPC clusters in the world, local university or company clusters, a single server, in the cloud, or on a workstation down the hall. Your container is a single file, and you don’t have to worry about how to install all the software you need on each different operating system. 1.1.1 Why use Singularity? Singularity was created to run complex applications on HPC clusters in a simple, portable, and reproducible way. First developed at Lawrence Berkeley National Laboratory, it quickly became popular at other HPC sites, academic sites, and beyond. Singularity is an open-source project, with a friendly community of developers and users. The user base continues to expand, with Singularity now used across industry and academia in many areas of work. Many container platforms are available, but Singularity is focused on: • Verifiable reproducibility and security, using cryptographic signatures, an immutable container image format, and in-memory decryption. • Integration over isolation by default. Easily make use of GPUs, high speed networks, parallel filesystems on a cluster or server by default. • Mobility of compute. The single file SIF container format is easy to transport and share. • A simple, effective security model. You are the same user inside a container as outside, and cannot gain addi- tional privilege on the host system by default. Read more about Security in Singularity. 1.1.2 Why use containers? A Unix operating system is broken into two primary components, the kernel space, and the user space. The Kernel talks to the hardware, and provides core system features. The user space is the environment that most people are most familiar with. It is where applications, libraries and system services run. Traditionally you use an operating system that has a fixed combination of kernel and user space. If you have access to a machine running CentOS then you cannot install software that was packaged for Ubuntu on it, because the user space of these distributions is not compatible. It can also be very difficult to install multiple versions of the same software, which might be needed to support reproducibility in different workflows over time. Containers change the user space into a swappable component. This means that the entire user space portion of a Linux operating system, including programs, custom configurations, and environment can be independent of whether 3 Singularity User Guide, Release 3.7 your system is running CentOS, Fedora etc., underneath. A Singularity container packages up whatever you need into a single, verifiable file. Software developers can now build their stack onto whatever operating system base fits their needs best, and create distributable runtime environments so that users never have to worry about dependencies and requirements, that they might not be able to satisfy on their systems. 1.1.3 Use Cases BYOE: Bring Your Own Environment! Engineering work-flows for research computing can be a complicated and iterative process, and even more so on a shared and somewhat inflexible production environment. Singularity solves this problem by making the environment flexible. Additionally, it is common (especially in education) for schools to provide a standardized pre-configured Linux distri- bution to the students which includes all of the necessary tools, programs, and configurations so they can immediately follow along. Reproducible science Singularity containers can be built to include all of the programs, libraries, data and scripts such that an entire demon- stration can be contained and either archived or distributed for others to replicate no matter what version of Linux they are presently running. Commercially supported code requiring a particular environment Some commercial applications are only certified to run on particular versions of Linux. If that application was installed into a Singularity container running the version of Linux that it is certified for, that container could run on any Linux host. The application environment, libraries, and certified stack would all continue to run exactly as it is intended. Additionally, Singularity blurs the line between container and host such that your home directory (and other directo- ries) exist within the container. Applications within the container have full and direct access to all files you own thus you can easily incorporate the contained commercial application into your work and process flow on the host. Static environments (software appliances) Fund once, update never software development model. While this is not ideal, it is a common scenario for research funding. A certain amount of money is granted for initial development, and once that has been done the interns, grad students, post-docs, or developers are reassigned to other projects. This leaves the software stack un-maintained, and even rebuilds for updated compilers or Linux distributions can not be done without unfunded effort. 4 Chapter 1. Getting Started & Background Information Singularity User Guide, Release 3.7 Legacy code on old operating systems Similar to the above example, while this is less than ideal it is a fact of the research ecosystem. As an example, I know of one Linux distribution which has been end of life for 15 years which is still in production due to the software stack which is custom built for this environment. Singularity has no problem running that operating system and application stack on a current operating system and hardware. Complicated software stacks that are very host specific There are various software packages which are so complicated that it takes much effort in order to port, update and qualify to new operating systems or compilers. The atmospheric and weather applications are a good example of this. Porting them to a contained operating system will prolong the use-fullness of the development effort considerably. Complicated work-flows that require custom installation and/or data Consolidating a work-flow into a Singularity container simplifies distribution and replication of scientific results. Making containers available along with published work enables other scientists to build upon (and verify) previous scientific work. 1.2 Quick Start This guide is intended for running Singularity on a computer where you have root (administrative) privileges, and will install Singularity from source code. Other installation options, including building an RPM package and installing Singularity without root privileges are discussed in the installation section of the admin guide. If you need to
Load more

Recommended publications
  • The Kernel Report
    The kernel report (ELC 2012 edition) Jonathan Corbet LWN.net [email protected] The Plan Look at a year's worth of kernel work ...with an eye toward the future Starting off 2011 2.6.37 released - January 4, 2011 11,446 changes, 1,276 developers VFS scalability work (inode_lock removal) Block I/O bandwidth controller PPTP support Basic pNFS support Wakeup sources What have we done since then? Since 2.6.37: Five kernel releases have been made 59,000 changes have been merged 3069 developers have contributed to the kernel 416 companies have supported kernel development February As you can see in these posts, Ralink is sending patches for the upstream rt2x00 driver for their new chipsets, and not just dumping a huge, stand-alone tarball driver on the community, as they have done in the past. This shows a huge willingness to learn how to deal with the kernel community, and they should be strongly encouraged and praised for this major change in attitude. – Greg Kroah-Hartman, February 9 Employer contributions 2.6.38-3.2 Volunteers 13.9% Wolfson Micro 1.7% Red Hat 10.9% Samsung 1.6% Intel 7.3% Google 1.6% unknown 6.9% Oracle 1.5% Novell 4.0% Microsoft 1.4% IBM 3.6% AMD 1.3% TI 3.4% Freescale 1.3% Broadcom 3.1% Fujitsu 1.1% consultants 2.2% Atheros 1.1% Nokia 1.8% Wind River 1.0% Also in February Red Hat stops releasing individual kernel patches March 2.6.38 released – March 14, 2011 (9,577 changes from 1198 developers) Per-session group scheduling dcache scalability patch set Transmit packet steering Transparent huge pages Hierarchical block I/O bandwidth controller Somebody needs to get a grip in the ARM community.
    [Show full text]
  • Industrial Control Via Application Containers: Migrating from Bare-Metal to IAAS
    Industrial Control via Application Containers: Migrating from Bare-Metal to IAAS Florian Hofer, Student Member, IEEE Martin A. Sehr Antonio Iannopollo, Member, IEEE Faculty of Computer Science Corporate Technology EECS Department Free University of Bolzano-Bozen Siemens Corporation University of California Bolzano, Italy Berkeley, CA 94704, USA Berkeley, CA 94720, USA fl[email protected] [email protected] [email protected] Ines Ugalde Alberto Sangiovanni-Vincentelli, Fellow, IEEE Barbara Russo Corporate Technology EECS Department Faculty of Computer Science Siemens Corporation University of California Free University of Bolzano-Bozen Berkeley, CA 94704, USA Berkeley, CA 94720, USA Bolzano, Italy [email protected] [email protected] [email protected] Abstract—We explore the challenges and opportunities of control design full authority over the environment in which shifting industrial control software from dedicated hardware to its software will run, it is not straightforward to determine bare-metal servers or cloud computing platforms using off the under what conditions the software can be executed on cloud shelf technologies. In particular, we demonstrate that executing time-critical applications on cloud platforms is viable based on computing platforms due to resource virtualization. Yet, we a series of dedicated latency tests targeting relevant real-time believe that the principles of Industry 4.0 present a unique configurations. opportunity to explore complementing traditional automation Index Terms—Industrial Control Systems, Real-Time, IAAS, components with a novel control architecture [3]. Containers, Determinism We believe that modern virtualization techniques such as application containerization [3]–[5] are essential for adequate I. INTRODUCTION utilization of cloud computing resources in industrial con- Emerging technologies such as the Internet of Things and trol systems.
    [Show full text]
  • Rootless Containers with Podman and Fuse-Overlayfs
    CernVM Workshop 2019 (4th June 2019) Rootless containers with Podman and fuse-overlayfs Giuseppe Scrivano @gscrivano Introduction 2 Rootless Containers • “Rootless containers refers to the ability for an unprivileged user (i.e. non-root user) to create, run and otherwise manage containers.” (https://rootlesscontaine.rs/ ) • Not just about running the container payload as an unprivileged user • Container runtime runs also as an unprivileged user 3 Don’t confuse with... • sudo podman run --user foo – Executes the process in the container as non-root – Podman and the OCI runtime still running as root • USER instruction in Dockerfile – same as above – Notably you can’t RUN dnf install ... 4 Don’t confuse with... • podman run --uidmap – Execute containers as a non-root user, using user namespaces – Most similar to rootless containers, but still requires podman and runc to run as root 5 Motivation of Rootless Containers • To mitigate potential vulnerability of container runtimes • To allow users of shared machines (e.g. HPC) to run containers without the risk of breaking other users environments • To isolate nested containers 6 Caveat: Not a panacea • Although rootless containers could mitigate these vulnerabilities, it is not a panacea , especially it is powerless against kernel (and hardware) vulnerabilities – CVE 2013-1858, CVE-2015-1328, CVE-2018-18955 • Castle approach : it should be used in conjunction with other security layers such as seccomp and SELinux 7 Podman 8 Rootless Podman Podman is a daemon-less alternative to Docker • $ alias
    [Show full text]
  • Portability: Containers, Cloud
    JEDI Portability Across Platforms Containers, Cloud Computing, and HPC Mark Miesch, Rahul Mahajan, Xin Zhang, David Hahn, Francois Vandenberg, Jim Rosinski, Dan Holdaway, Yannick Tremolet, Maryam Abdioskouei, Steve Herbener, Mark Olah, Benjamin Menetrier, Anna Shlyaeva, Clementine Gas Academy website http://academy.jcsda.org/june2019 ‣ Instructions for accessing AWS ‣ Activity instructions ‣ Presentation slides ‣ Doxygen documentation for fv3-bundle We will add further content throughout the week Outline I) JEDI Portability Overview ✦ Unified vision for software development and distribution II) Container Fundamentals ✦ What are they? How do they work? ✦ Docker, Charliecloud, and Singularity III) Using the JEDI Containers ✦ How they are built and deployed ✦ Mac and Windows (Vagrant) IV) HPC and Cloud Computing ✦ Environment modules ✦ Containers in HPC? V) Summary and Outlook JEDI Software Dependencies ‣ Essential ✦ Compilers, MPI ✦ CMake Common versions among users ✦ SZIP, ZLIB and developers minimize ✦ LAPACK / MKL, Eigen 3 stack-related debugging ✦ NetCDF4, HDF5 ✦ udunits ✦ Boost (headers only) ✦ ecbuild, eckit, fckit ‣ Useful ✦ ODB-API, eccodes ✦ PNETCDF ✦ Parallel IO ✦ nccmp, NCO ✦ Python tools (py-ncepbufr, netcdf4, matplotlib…) ✦ NCEP libs ✦ Debuggers & Profilers (ddt/TotalView, kdbg, valgrind, TAU…) The JEDI Portability Vision I want to run JEDI on… Development ‣ My Laptop/Workstation/PC ✦ We provide software containers ✦ Mac & Windows system need to first establish a linux environment (e.g. a Vagrant/VirtualBox virtual machine) Development
    [Show full text]
  • Practical and Effective Sandboxing for Non-Root Users
    Practical and effective sandboxing for non-root users Taesoo Kim and Nickolai Zeldovich MIT CSAIL Abstract special tools. More importantly, all use cases neither re- quire root privilege nor require modification to the OS MBOX is a lightweight sandboxing mechanism for non- kernel and applications. root users in commodity OSes. MBOX’s sandbox usage model executes a program in the sandbox and prevents Overview MBOX aims to make running a program in a the program from modifying the host filesystem by layer- sandbox as easy as running the program itself. For exam- ing the sandbox filesystem on top of the host filesystem. ple, one can sandbox a program (say wget) by running as At the end of program execution, the user can examine below: changes in the sandbox filesystem and selectively com- mit them back to the host filesystem. MBOX implements $ mbox -- wget google.com ... this by interposing on system calls and provides a variety Network Summary: of useful applications: installing system packages as a > [11279] -> 173.194.43.51:80 > [11279] Create socket(PF_INET,...) non-root user, running unknown binaries safely without > [11279] -> a00::2607:f8b0:4006:803:0 network accesses, checkpointing the host filesystem in- ... Sandbox Root: stantly, and setting up a virtual development environment > /tmp/sandbox-11275 without special tools. Our performance evaluation shows > N:/tmp/index.html [c]ommit, [i]gnore, [d]iff, [l]ist, [s]hell, [q]uit ?> that MBOX imposes CPU overheads of 0.1–45.2% for var- ious workloads. In this paper, we present MBOX’s design, wget is a utility to download files from the web.
    [Show full text]
  • Demystifying Internet of Things Security Successful Iot Device/Edge and Platform Security Deployment — Sunil Cheruvu Anil Kumar Ned Smith David M
    Demystifying Internet of Things Security Successful IoT Device/Edge and Platform Security Deployment — Sunil Cheruvu Anil Kumar Ned Smith David M. Wheeler Demystifying Internet of Things Security Successful IoT Device/Edge and Platform Security Deployment Sunil Cheruvu Anil Kumar Ned Smith David M. Wheeler Demystifying Internet of Things Security: Successful IoT Device/Edge and Platform Security Deployment Sunil Cheruvu Anil Kumar Chandler, AZ, USA Chandler, AZ, USA Ned Smith David M. Wheeler Beaverton, OR, USA Gilbert, AZ, USA ISBN-13 (pbk): 978-1-4842-2895-1 ISBN-13 (electronic): 978-1-4842-2896-8 https://doi.org/10.1007/978-1-4842-2896-8 Copyright © 2020 by The Editor(s) (if applicable) and The Author(s) This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Open Access This book is licensed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license and indicate if changes were made. The images or other third party material in this book are included in the book’s Creative Commons license, unless indicated otherwise in a credit line to the material.
    [Show full text]
  • Hardening Kubernetes Containers Security with Seccomp an Often Overlooked Way to Harden Kubernetes Containers’ Security Is by Applying Seccomp Profiles
    eBook: Hardening Kubernetes Containers Security with Seccomp An often overlooked way to harden Kubernetes containers’ security is by applying seccomp profiles. A relatively ancient security mechanism in the Linux kernel, seccomp (short for secure computing mode) tells the Linux kernel which system calls a process can make. Restricting a process from accessing the kernel via system calls restricts the attack surface, and can prevent privilege escalation. The original seccomp was very restrictive and unwieldy to use. The first version of seccomp was merged in 2005 into Linux 2.6.12. It was enabled by writing a "1" to /proc/PID/seccomp. Then, the process could only make 4 syscalls: read(), write(), exit(), and sigreturn()"). Today, the seccomp-bpf extension, which uses the Berkeley Packet Filter rules, is more commonly used as it allows filtering system calls using a configurable policy. 1 Given the number of system calls invoked to execute a Customizing seccomp profiles, in effect, provides a container, each of which is a potential entry vector for deeply embedded line of defense that adds a layer of attackers, appropriately applying seccomp profiles goes a protection to your application in case of breach. As the long way to securing a container. probability of any application being breached is constantly rising, limiting the possible extent of a successful breach should be applied at as many levels as possible. Ever-increasing interconnections between applications, and increased reliance on external service providers as well as open-source images makes restricting seccomp profiles crucial to improving cloud-native security. Filtering system calls is not the same as sandboxing.
    [Show full text]
  • Enclave Security and Address-Based Side Channels
    Graz University of Technology Faculty of Computer Science Institute of Applied Information Processing and Communications IAIK Enclave Security and Address-based Side Channels Assessors: A PhD Thesis Presented to the Prof. Stefan Mangard Faculty of Computer Science in Prof. Thomas Eisenbarth Fulfillment of the Requirements for the PhD Degree by June 2020 Samuel Weiser Samuel Weiser Enclave Security and Address-based Side Channels DOCTORAL THESIS to achieve the university degree of Doctor of Technical Sciences; Dr. techn. submitted to Graz University of Technology Assessors Prof. Stefan Mangard Institute of Applied Information Processing and Communications Graz University of Technology Prof. Thomas Eisenbarth Institute for IT Security Universit¨atzu L¨ubeck Graz, June 2020 SSS AFFIDAVIT I declare that I have authored this thesis independently, that I have not used other than the declared sources/resources, and that I have explicitly indicated all material which has been quoted either literally or by content from the sources used. The text document uploaded to TUGRAZonline is identical to the present doctoral thesis. Date, Signature SSS Prologue Everyone has the right to life, liberty and security of person. Universal Declaration of Human Rights, Article 3 Our life turned digital, and so did we. Not long ago, the globalized commu- nication that we enjoy today on an everyday basis was the privilege of a few. Nowadays, artificial intelligence in the cloud, smartified handhelds, low-power Internet-of-Things gadgets, and self-maneuvering objects in the physical world are promising us unthinkable freedom in shaping our personal lives as well as society as a whole. Sadly, our collective excitement about the \new", the \better", the \more", the \instant", has overruled our sense of security and privacy.
    [Show full text]
  • Etsi Tr 103 528 V1.1.1 (2018-08)
    ETSI TR 103 528 V1.1.1 (2018-08) TECHNICAL REPORT SmartM2M; Landscape for open source and standards for cloud native software applicable for a Virtualized IoT service layer 2 ETSI TR 103 528 V1.1.1 (2018-08) Reference DTR/SmartM2M-103528 Keywords cloud, IoT, open source, virtualisation ETSI 650 Route des Lucioles F-06921 Sophia Antipolis Cedex - FRANCE Tel.: +33 4 92 94 42 00 Fax: +33 4 93 65 47 16 Siret N° 348 623 562 00017 - NAF 742 C Association à but non lucratif enregistrée à la Sous-Préfecture de Grasse (06) N° 7803/88 Important notice The present document can be downloaded from: http://www.etsi.org/standards-search The present document may be made available in electronic versions and/or in print. The content of any electronic and/or print versions of the present document shall not be modified without the prior written authorization of ETSI. In case of any existing or perceived difference in contents between such versions and/or in print, the only prevailing document is the print of the Portable Document Format (PDF) version kept on a specific network drive within ETSI Secretariat. Users of the present document should be aware that the document may be subject to revision or change of status. Information on the current status of this and other ETSI documents is available at https://portal.etsi.org/TB/ETSIDeliverableStatus.aspx If you find errors in the present document, please send your comment to one of the following services: https://portal.etsi.org/People/CommiteeSupportStaff.aspx Copyright Notification No part may be reproduced or utilized in any form or by any means, electronic or mechanical, including photocopying and microfilm except as authorized by written permission of ETSI.
    [Show full text]
  • A Research on Android Technology with New Version Naugat(7.0,7.1)
    IOSR Journal of Computer Engineering (IOSR-JCE) e-ISSN: 2278-0661,p-ISSN: 2278-8727, Volume 19, Issue 2, Ver. I (Mar.-Apr. 2017), PP 65-77 www.iosrjournals.org A Research On Android Technology With New Version Naugat(7.0,7.1) Nikhil M. Dongre , Tejas S. Agrawal, Ass.prof. Sagar D. Pande (Dept. CSE, Student of PRPCOE, SantGadge baba Amravati University, [email protected] contact no: 8408895842) (Dept. CSE, Student of PRMCEAM, SantGadge baba Amravati University, [email protected] contact no: 9146951658) (Dept. CSE, Assistant professor of PRPCOE, SantGadge baba Amravati University, [email protected], contact no:9405352824) Abstract: Android “Naugat” (codenamed Android N in development) is the seventh major version of Android Operating System called Android 7.0. It was first released as a Android Beta Program build on March 9 , 2016 with factory images for current Nexus devices, which allows supported devices to be upgraded directly to the Android Nougat beta via over-the-air update. Nougat is introduced as notable changes to the operating system and its development platform also it includes the ability to display multiple apps on-screen at once in a split- screen view with the support for inline replies to notifications, as well as an OpenJDK-based Java environment and support for the Vulkan graphics rendering API, and "seamless" system updates on supported devices. Keywords: jellybean, kitkat, lollipop, marshmallow, naugat I. Introduction This research has been done to give you the best details toward the exciting new frontier of open source mobile development. Android is the newest mobile device operating system, and this is one of the first research to help the average programmer become a fearless Android developer.
    [Show full text]
  • Linux OS-Level Security Nikitas Angelinas
    Linux OS-Level Security Nikitas Angelinas MSST 2015 Agenda ● SELinux ● SELinux issues ● Audit subsystem ● Audit issues ● Further OS hardening 2 SELinux ● Security-Enhanced Linux ● Is NOT a Linux distribution ● A kernel feature ● A Linux Security Module (LSM) ● security fields in kernel data structures — processes, files, directories, sockets, IPC, and other OS objects ● hooks on all paths from userspace — return a binary predicate: allowed or not allowed (e.g. EACCES) 3 SELinux ● SELinux is a labeling system ● Every process has a label ● Every OS object has a label ● Policy rules control access between processes and objects, based on their labels ● Policy rules are enforced by the kernel ● The objective is to contain misbehaving/compromised userspace applications 4 SELinux policy management application interface userspace open(2) kernel error checks selinuxfs DAC checks cache Allowed? miss? Security Server LSM hook Access Vector Cache (Policy Rules and Access Decision Logic) Yes/No return SELinux 5 SELinux ● Mandatory Access Control ● vs. Discretionary Access Control (file ownership, permissions) ● Labels are of the form user:role:type:level ● e.g. process: /usr/sbin/sshd → system_u:object_r:sshd_exec_t:s0 ● e.g. file: /root/ssh/* → root:object_r:ssh_home_t ● SELinux implements LSM hooks and offers: ● Role-based Access Control ● Type Enforcement ● Multi-Level Security 6 SELinux labels and rules ● ls -Z /usr/sbin/sshd -rwxr-xr-x. root root system_u:object_r:sshd_exec_t:s0 /usr/sbin/sshd ● ls -Z /root/.ssh/id_rsa -rw-------. root root root:object_r:ssh_home_t /root/.ssh/id_rsa ● ls -Z /etc/ssh/sshd_config -rw-------. root root system_u:object_r:etc_t /etc/ssh/sshd_config ● ls -Z /var/run/sshd.pid -rw-------.
    [Show full text]
  • Introduction to Containers
    Introduction to Containers Martin Čuma Center for High Performance Computing University of Utah [email protected] Overview • Why do we want to use containers? • Containers basics • Run a pre-made container • Build and deploy a container • Containers for complex software 06-Nov-20 http://www.chpc.utah.edu Slide 2 Hands on setup 1. Download the talk slides http://home.chpc.utah.edu/~mcuma/chpc/Containers20s.pdf https://tinyurl.com/yd2xtv5d 2. Using FastX or Putty, ssh to any CHPC Linux machine, e.g. $ ssh [email protected] 3. Load the Singularity and modules $ module load singularity 06-Nov-20 http://www.chpc.utah.edu Slide 3 Hands on setup for building containers 1. Create a GitHub account if you don’t have one https://github.com/join {Remember your username and password!} 2. Go to https://cloud.sylabs.io/home click Remote Builder, then click Sign in to Sylabs and then Sign in with GitHub, using your GitHub account 3. Go to https://cloud.sylabs.io/builder click on your user name (upper right corner), select Access Tokens, write token name, click Create a New Access Token, and copy it 4. In the terminal on frisco, install it to your ~/.singularity/sylabs-token file nano ~/.singularity/sylabs-token, paste, ctrl-x to save 06-Nov-20 http://www.chpc.utah.edu Slide 4 Why to use containers? 06-Nov-20 http://www.chpc.utah.edu Slide 5 Software dependencies • Some programs require complex software environments – OS type and versions – Drivers – Compiler type and versions – Software dependencies • glibc, stdlibc++ versions • Other libraries
    [Show full text]