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Proceedings of the 29Th International Conference on Animal Genetics

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Proceedings of the 29Th International Conference on Animal Genetics 29th International Conference on Animal Genetics ISAG2004/TOKYO – Development of Genetic Research and Animal Production – September 11 – 16, 2004 Meiji University, Surugadai Campus International Society for Animal Genetics Japanese Society of Animal Breeding and Genetics Supported by The Ministry of Agriculture, Forestry and Fisheries of Japan Tokyo Metropolitan Government Japanese Society of Animal Science Japan Poultry Science Association Japanese Society of Veterinary Science Japanese Society of Fisheries Science Japanese Association for Laboratory Animal Science The Genetic Society of Japan Japanese Society of Breeding Japan Livestock Technology Association Livestock Improvement Association of Japan Japan Racing Association Japan National Tourist Organization Organizing Committee of ISAG2004/TOKYO Chair Vice-chair Secretary General Yoshiyuki Sasaki* Takashi Amano* Soichi Tsuji* Hiroshi Hihara Isao Hyodo Yoshiaki Izaike Misao Kanemaki* Hiroshi Kitani Eiji Kobayashi Masanori Komatsu* Tetsuo Kunieda* Yoshizane Maeda Kimiaki Maruyama* Mitsuru Minezawa Tadayoshi Mitsuhashi Mitsuo Morita Harutaka Mukoyama* Takao Namikawa* Taro Obata Hiroyuki Ogawa Kenichi Ohmae Takao Oishi Hironori Oki Senkichi Sakai Eimei Sato Yoshikazu Sugimoto* Katsushi Suzuki Nobuyuki Taniguchi Hideaki Tojo* Katsuhiko Wada Yoshio Yamamoto* Hiroshi Yasue* *Members of Standing Organizing Committee Contents Time Table ..................................................................................................... 3 Conference Programs Plenary Sessions .............................................................................. 4 Workshops ........................................................................................ 5 Oral Presentations of Selected Posters ............................................ 9 Best Posters .................................................................................... 11 Other Programs .............................................................................. 12 Guest Speakers ........................................................................................... 13 Abstracts Plenary Sessions ............................................................................. 15 Workshops ....................................................................................... 27 Section A (Bioinformatics, Statistical Genetics, and Genome Technology) ................... 31 Section B (MHC and Immunogenetics) .......................................... 43 Section C (Functional Genomics) ................................................... 52 Section D (Gene Mapping and Comparative Genomics) ................ 67 Section E (Polymorphism and Biodiversity) .................................... 84 Section F (Association between Markers and Traits) ................... 108 Author Index .............................................................................................. 131 List of Participants .................................................................................... 140 Time Table of the conference 9:00 10:00 11:00 12:00 13:00 14:00 15:00 16:00 17:00 18:00 19:00 20:00 Registration (1F) Poster Mounting (2F) Executive Workshops: Workshops: Committee (6-1) Cattle (1) Pig Gene Mapping (309B) GeneMapping Meeting (310B) Coffee Break (309B) Welcome (2) Dog gene Mapping Lunch (7) Equine Genetics Reception (309A) (309A) at at Liberty Tower (3) Poultry Gene (3) Poultry Gene Saturday Liberty Mapping (309E) Mapping (309E) (23F) September 11 Tower (4) Cattle Hereditary (8) Rabbit Gene (17F) Mapping (309C) Workshop: Diseases (309C) Coffee Break (9) Gene Networks (R-1) Animal Forensics-1 (5) Mouse Genome for Beef Marbling (309F) Informatics (309F) (309F) 9:00 10:00 11:00 12:00 13:00 14:00 15:00 16:00 17:00 18:00 19:00 20:00 Registration (1F) Poster Exhibition (2F) Workshops: Workshops: (6-2) Cattle Ggene (13) Comparative Mapping Mapping (309B) (309B) Plenary Session 1 (12) Fish and Shellfish (15) ISAG/FAO Biodiversity Lunch Gene Mapping (309C) (309C) Genetic Diversity of at Liberty Tower (10) Horse Gene Livestock and its (10) Horse Gene Mapping (17F) (309A) Mapping (309A) Sunday Utlization for Breeding (11) Dog Applied (14) Marker Assisted Coffee Break September 12 (3F) Genetics (309E) Selection (309E) (16) Applied Genetics in Sheep and Goats (309F) Opening Ceremony (3F) Special Exhibition “Native Domestic Animals of Eastern Asia”（９Ｆ） 9:00 10:00 11:00 12:00 13:00 14:00 15:00 16:00 17:00 18:00 19:00 20:00 Registration (1F) Poster Exhibition (2F) Workshop: (17) Swine Genome Plenary Session 2 Lunch Oral Presentations Poster Discussion: Sequencing (309B) at Liberty Tower of Selected Posters Ultimate Chromosome Odd numbers (2F) Monday Maps (3F) (17F) (3F) Coffee Break September 13 Special Exhibition “Native Domestic Animals of Eastern Asia”（９Ｆ） 9:00 10:00 11:00 12:00 13:00 14:00 15:00 16:00 17:00 18:00 19:00 20:00 Registration (1F) Poster Exhibition (2F) Plenary Session 3 Lunch Poster Poster Discussion: Oral Presentations at Liberty Tower Removing Bright and Dark Sides of Even numbers (2F) of Selected Posters Tuesday QTL Analysis (3F) (17F) (3F) September 14 Coffee Break Special Exhibition “Native Domestic Animals of Eastern Asia”（９Ｆ） 9:00 10:00 11:00 12:00 13:00 14:00 15:00 16:00 17:00 18:00 19:00 20:00 Regis. Plenary Session 4 Seeds for ISAG Banquet Future Business Conference Tours with Lunch Box at Tokyo Prince Hotel Genome Meeting (3F) (～22:00) Wednesday Analysis September 15 (3F) 9:00 10:00 11:00 12:00 13:00 14:00 15:00 16:00 17:00 18:00 19:00 20:00 Registration Workshops: (18) Genome Sequencing (309B) (19) Cattle Molecular Markers (309A) (20) Avian Immunogenetics Thursesday September 16 (309E) (R-2) Animal Forensics-2 Executive Committee Meeting (310B) (309F) 3 Plenary Sessions 1.Genetic Diversity of Livestock and its Utilization for Breeding September 12 (Sunday) 10:00-13:00 at Auditorium (Academy Common 3F) Chairs:Takao Namikawa (Nagoya University, Japan) Johann-Nikolaus Meyer (Göttingen University, Germany) 1) Several rivers from Babylon: The genetic legacy of Near Eastern cattle domestication (P001) Dan Bradley (Trinity College Dublin, Ireland) 2) Genetic diversity evaluation and conservation strategy in pigs (P002) Louis Ollivier (INRA, Station de Génétique Quantitative et Appliquée, France) 3) Genetic diversity of cattle in Southeast Asia (P003) Kazuaki Tanaka (School of Veterinary Medicine, Azabu University, Japan) 4) Genetic diversity and phylogeny of pigs in Asia (P004) Yaetsu Kurosawa (Cattle Museum, Japan) 2. Ultimate Chromosome Map September 13 (Monday) 9:00-12:00 at Auditorium (Academy Common 3F) Chair: James E. Womack (Texas A&M University, USA) 1) Creating the ultimate maps: Genomic sequencing of domesticated animals (P005) Lawrence B. Schook (Institute for Genomic Biology, University of Illinois, USA) 2) Chicken genome sequence and the AvianNET Research Community (P006) David W. Burt (Roslin Institute, UK) 3) From dynamic transcriptome analysis to future life science (P007) Yoshihide Hayashizaki (Jun Kawai in his behalf; Riken Genomic Sciences Center, Japan) 3. Bright and Dark Sides of QTL Analysis September 14 (Tuesday) 9:00-12:00 at Auditorium (Academy Common 3F) Chair: Denis Milan (INRA, France) 1) Towards transgenic engineering of late-onset, male-specific double muscling (P008) Dimitri Pirottin, Luc Grobet, and Michel Georges (University of Liège, Belgium) 2) Genome-wide scan of disease genes by association analysis using microsatellites (P009) Hidetoshi Inoko (Tokai University School of Medicine, Japan.) 3) Gene-mapping strategy of human common metabolic disease of civilization in the post-genome era (P010) Ituro Inoue (Institute of Medical Science, University of Tokyo, Japan) 4. Seed for Future Genome Analysis September 15 (Wednesday) 9:00-10:00 at Auditorium (Academy Common 3F) Chair: Noelle E. Cockett (Utah State University, USA) 1) Mouse models for human diseases – the German mouse clinic and the European mouse mutant archive-EMMA (P011) Martin Hrabé de Angelis (GSF National Research Center, Germany) 4 Workshops 1. Pig Gene Mapping (Chair: Gray Rohrer) September 11 (Saturday) 13:30-16:30 at Room 309 B (Academy Common 9F) 2. Dog Gene Mapping (Chair: Melba S. Ketchum) September 11 (Saturday) 13:30-15:30 at Room 309 A (Academy Common 9F) 3. Poultry Gene Mapping (Chair: Richard Crooijmans) September 11 (Saturday) 13:30-15:30 and 16:00-18:00 at Room 309 E (Academy Common 9F) Part 1: 13:30-15:30 Chicken genome Chicken RH-map and alignment to the chicken linkage map – Alain Vignal (INRA) Cytogentic map and alignment to the linkage map – .......... Chicken BAC libraries and alignment to the genetic map – Richard Crooijmans (Wageningen University) The Chicken Genome Sequence – Dave Burt (Roslin Institute) The chicken SNP-map – SNP-consortium Evolution of tissue-specific genes – Nicholas J Dickens (University of Oxford) Chicken MHC Overview MHC-complex – Marcia Miller (Beckman Research Institute of the City of Hope) Part 2: 16:00-18:00 Chicken QTLs Overview QTLs integrated within Chickace (an Acedb database) – Annemieke Rattink (Nutreco Breeding Research Center) QTL-detection guidelines – .......... QTL affecting egg production – Masaoki Tsudzuki (Hiroshima University) Identification of a transferase in fatty livers – Takeshi Shibata (Kyushu Tokai University) FADS1 candidate gene for egg yolk fatty ascid profiles – Xiquan Zhang (South China Agricultural Univeristy)) Quail genomics Linkage map – Hideyuki Mannen (Kobe University) Candidate gene analysis – Karl Schellander (University of Bonn) QTLs
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