Can Otolith Elemental Chemistry Retrospectively Track Migrations in Fully Marine fishes? A
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Phylogeny of a Rapidly Evolving Clade: the Cichlid Fishes of Lake Malawi
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 5107–5110, April 1999 Evolution Phylogeny of a rapidly evolving clade: The cichlid fishes of Lake Malawi, East Africa (adaptive radiationysexual selectionyspeciationyamplified fragment length polymorphismylineage sorting) R. C. ALBERTSON,J.A.MARKERT,P.D.DANLEY, AND T. D. KOCHER† Department of Zoology and Program in Genetics, University of New Hampshire, Durham, NH 03824 Communicated by John C. Avise, University of Georgia, Athens, GA, March 12, 1999 (received for review December 17, 1998) ABSTRACT Lake Malawi contains a flock of >500 spe- sponsible for speciation, then we expect that sister taxa will cies of cichlid fish that have evolved from a common ancestor frequently differ in color pattern but not morphology. within the last million years. The rapid diversification of this Most attempts to determine the relationships among cichlid group has been attributed to morphological adaptation and to species have used morphological characters, which may be sexual selection, but the relative timing and importance of prone to convergence (8). Molecular sequences normally these mechanisms is not known. A phylogeny of the group provide the independent estimate of phylogeny needed to infer would help identify the role each mechanism has played in the evolutionary mechanisms. The Lake Malawi cichlids, however, evolution of the flock. Previous attempts to reconstruct the are speciating faster than alleles can become fixed within a relationships among these taxa using molecular methods have species (9, 10). The coalescence of mtDNA haplotypes found been frustrated by the persistence of ancestral polymorphisms within populations predates the origin of many species (11). In within species. -
Our Fish Ageing Laboratory. This Is Where the Coastal
WELCOME TO OUR FISH AGEING LABORATORY. THIS IS WHERE THE COASTAL RESOURCES DIVISION OF THE GEORGIA DEPARTMENT OF NATURAL RESOURCES STUDIES THE DATA WE’VE COLLECTED TO MAKE THE BEST DECISIONS POSSIBLE IN MANAGING IMPORTANT FISH SPECIES. EFFECTIVE SPECIES MANAGEMENT HELPS TO ENSURE A HEALTHY AND ABUNDANT POPULATION OF RECREATIONAL AND COMMERCIAL FISH, AND PRESERVES OUR VITAL ECO-SYSTEM. COASTAL RESOURCES DIVISION BIOLOGISTS COLLECT, PROCESS, EVALUATE, AND PRESERVE THE “AGING STRUCTURES” OF PRIORITY FISH. “AGING STRUCTURES” ARE PARTS OF THE FISH ANATOMY THAT CAN BE EVALUATED TO DETERMINE THE AGE OF A FISH. BY KNOWING THE AGE OF FISH, SCIENTISTS CAN ESTIMATE GROWTH RATES OF THE SPECIES, MAXIMUM AGE, AGE-AT-MATURITY, AND TRENDS FOR FUTURE GENERATIONS. THIS INFORMATION CAN ASSIST IN DETERMINING THE HEALTH AND SUSTAINABILITY OF GEORGIA’S FISHERIES. OUR PROCESS BEGINS WITH THE HELP OF ANGLERS FROM ACROSS GEORGIA’S COAST. THE MARINE SPORTFISH CARCASS RECOVERY PROJECT ENCOURAGES ANGLERS TO DEPOSIT FILETED CARCASSES AT COLLECTION POINTS NEAR FISH CLEANING STATIONS, MARINAS AND PRIVATE DOCKS. ANGLERS PLACE THE CARCASSES IN CHEST FREEZERS AND COASTAL RESOURCES DIVISION STAFF LATER TRANSPORT THEM TO THE DIVISION’S AGING LAB IN BRUNSWICK. ANGLERS HAVE DONATED MORE THAN 65,000 CARCASSES SINCE THE PROJECT BEGAN IN 1997. AFTER EACH FISH IS IDENTIFIED, MEASURED, AND ITS SEX DETERMINED, THE AGING LABORATORY WILL REMOVE A SMALL BONE CALLED AN OTOLITH. THE OTOLITH IS USED TO DETERMINE THE AGE OF THE FISH. THESE SMALL BONES AID FISH IN BALANCE AND HEARING, FUNCTIONING IN A MANNER SIMILAR AS THE INNER EAR OF HUMANS. OTOLITHS ARE SOMETIMES REFERRED TO AS EAR STONES OR EAR BONES. -
Otolith Strontium Traces Environmental History of Subyearling American Shad Alosa Sapidissima
MARINE ECOLOGY PROGRESS SERIES Vol. 119: 25-35,1995 Published March 23 Mar. Ecol. Prog. Ser. Otolith strontium traces environmental history of subyearling American shad Alosa sapidissima Karin E. Limburg Institute of Ecosystem Studies, Box AB, Millbrook. New York 12545. USA ABSTRACT: Sagittal otoliths of young-of-year American shad Alosa sapidjssirna from the Hudson River estuary, New York, USA, were transected with an X-ray-dispersive microprobe to examine temporal patterns of strontium, a micro-constituent found in otolith aragonite. Otoliths were assayed from fish reared on known diets (freshwater zooplankton, followed by artificial diet containing marine fishmeal) in fresh water. The switch from freshwater plankton to artificial diet resulted in a significant rise in Sr:Ca ratio in the otolith (mean increase 3.2-fold, p < 0.001) both for fish reared at 12S°C and those reared at 22"C, although there was no significant difference in Sr:Ca increases between the 2 temperature treat- ments. In a field study, Sr:Ca values of otoliths from wild fish caught in the freshwater reaches of the Hudson were low (mean 0.79 X 10-~Sr:Ca * 0.32 SD, range 0.00 to 1.46X 10-~).Six fish captured in a single t.raw1in the lower estuary on 25 September 1990 had low Sr:Ca values on the inner parts of their otoliths (corresponding to younger age: mean Sr.Ca = 0.98 X 10'~* 0.38 SU),but the strontium content increased 3- to 5-fold (mean Sr:Ca = 3.62 X 10-32 0.71 SD) on the outer parts, corresponding to dates when the fish were older. -
Sturgeon and Paddlefish (Acipenseridae) Saggital Otoliths Are Composed of the Calcium Carbonate Polymorphs Vaterite and Calcite
Journal of Fish Biology (2016) doi:10.1111/jfb.13085, available online at wileyonlinelibrary.com Sturgeon and paddlefish (Acipenseridae) saggital otoliths are composed of the calcium carbonate polymorphs vaterite and calcite B. M. Pracheil*†, B. C. Chakoumakos‡, M. Feygenson§, G. W. Whitledge‖, R. P. Koenigs¶ and R. M. Bruch¶ *Environmental Science Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, U.S.A., ‡Quantum Condensed Matter Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, U.S.A., §Chemical and Engineering Materials Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, U.S.A., ‖Center for Fisheries, Aquaculture and Aquatic Sciences, Southern Illinois University, Carbondale, IL 62901, U.S.A. and ¶Wisconsin Department of Natural Resources, Oshkosh, WI 54903, U.S.A. This study sought to resolve whether sturgeon (Acipenseridae) sagittae (otoliths) contain a non-vaterite fraction and to quantify how large a non-vaterite fraction is using neutron diffraction analysis. This study found that all otoliths examined had a calcite fraction that ranged from 18 ± 6to36± 3% by mass. This calcite fraction is most probably due to biological variation during otolith formation rather than an artefact of polymorph transformation during preparation. © 2016 The Fisheries Society of the British Isles Key words: Acipenser fulvescens. Otoliths, the calcium carbonate (CaCO3) ear bones of Osteichthyes, are truly a wonder of the Animal Kingdom. These tri-part structures essential for hearing and balance in fishes are composed of some form of3 CaCO and can be used to determine fish environmental history as well as fish age through enumeration of daily and annular rings (Pracheil et al., 2014). -
The African Coelacanth Genome Provides Insights Into Tetrapod Evolution
OPEN ARTICLE doi:10.1038/nature12027 The African coelacanth genome provides insights into tetrapod evolution Chris T. Amemiya1,2*, Jessica Alfo¨ldi3*, Alison P. Lee4, Shaohua Fan5, Herve´ Philippe6, Iain MacCallum3, Ingo Braasch7, Tereza Manousaki5,8, Igor Schneider9, Nicolas Rohner10, Chris Organ11, Domitille Chalopin12, Jeramiah J. Smith13, Mark Robinson1, Rosemary A. Dorrington14, Marco Gerdol15, Bronwen Aken16, Maria Assunta Biscotti17, Marco Barucca17, Denis Baurain18, Aaron M. Berlin3, Gregory L. Blatch14,19, Francesco Buonocore20, Thorsten Burmester21, Michael S. Campbell22, Adriana Canapa17, John P. Cannon23, Alan Christoffels24, Gianluca De Moro15, Adrienne L. Edkins14, Lin Fan3, Anna Maria Fausto20, Nathalie Feiner5,25, Mariko Forconi17, Junaid Gamieldien24, Sante Gnerre3, Andreas Gnirke3, Jared V. Goldstone26, Wilfried Haerty27, Mark E. Hahn26, Uljana Hesse24, Steve Hoffmann28, Jeremy Johnson3, Sibel I. Karchner26, Shigehiro Kuraku5{, Marcia Lara3, Joshua Z. Levin3, Gary W. Litman23, Evan Mauceli3{, Tsutomu Miyake29, M. Gail Mueller30, David R. Nelson31, Anne Nitsche32, Ettore Olmo17, Tatsuya Ota33, Alberto Pallavicini15, Sumir Panji24{, Barbara Picone24, Chris P. Ponting27, Sonja J. Prohaska34, Dariusz Przybylski3, Nil Ratan Saha1, Vydianathan Ravi4, Filipe J. Ribeiro3{, Tatjana Sauka-Spengler35, Giuseppe Scapigliati20, Stephen M. J. Searle16, Ted Sharpe3, Oleg Simakov5,36, Peter F. Stadler32, John J. Stegeman26, Kenta Sumiyama37, Diana Tabbaa3, Hakim Tafer32, Jason Turner-Maier3, Peter van Heusden24, Simon White16, Louise Williams3, Mark Yandell22, Henner Brinkmann6, Jean-Nicolas Volff12, Clifford J. Tabin10, Neil Shubin38, Manfred Schartl39, David B. Jaffe3, John H. Postlethwait7, Byrappa Venkatesh4, Federica Di Palma3, Eric S. Lander3, Axel Meyer5,8,25 & Kerstin Lindblad-Toh3,40 The discovery of a living coelacanth specimen in 1938 was remarkable, as this lineage of lobe-finned fish was thought to have become extinct 70 million years ago. -
The Lost Freshwater Goby Fish Fauna (Teleostei, Gobiidae) from the Early Miocene of Klinci (Serbia)
Swiss Journal of Palaeontology (2019) 138:285–315 https://doi.org/10.1007/s13358-019-00194-4 (0123456789().,-volV)(0123456789().,- volV) REGULAR RESEARCH ARTICLE The lost freshwater goby fish fauna (Teleostei, Gobiidae) from the early Miocene of Klinci (Serbia) 1 2,3 4 5 Katarina Bradic´-Milinovic´ • Harald Ahnelt • Ljupko Rundic´ • Werner Schwarzhans Received: 17 January 2019 / Accepted: 15 May 2019 / Published online: 1 June 2019 Ó The Author(s) 2019 Abstract Freshwater gobies played an important role in the Miocene paleolakes of central and southeastern Europe. Much data have been gathered from isolated otoliths, but articulated skeletons are relatively rare. Here, we review a rich assemblage of articulated gobies with abundant otoliths in situ from the late early Miocene lake deposits of Klinci in the Valjevo freshwater lake of the Valjevo-Mionica Basin of Serbia. The fauna was originally described by And¯elkovic´ in 1978, who noted many different fishes, including one goby (Gobius multipinnatus H. v. Meyer 1848), and was subsequently revised by Gaudant (1998), who collapsed all previously recognized species into a single gobiid species that he described as new, namely Gobius serbiensis Gaudant 1998. Our review resulted in the recognition of three highly adaptive extinct freshwater gobiid genera with four species being divided among them: Klincigobius andjelkovicae n.gen. and n.sp., Klincigobius serbiensis (Gaudant 1998), Rhamphogobius varidens n.gen. and n.sp., and Toxopyge campylus n.gen. and n.sp. Otoliths were found in situ in all four species, which allowed for the allocation of multiple previously described otolith-based species to these extinct gobiid genera. -
Preliminary Study & Growth of the Pelagic Clupeids in Lake
RESEARCH FOR THE MANAGEMENT OF THE FISHERIES ON LAKE GCP/RAF/271/FIN–TD/35 (En) TANGANYIKA GCP/RAF/271/FIN–TD/35 (En) June 1995 PRELIMINARY STUDY AND GROWTH OF THE PELAGIC CLUPEIDS IN LAKE TANGANYIKA ESTIMATED FROM DAILY OTOLITH INCREMENTS by Susanna Pakkasmaa and Jouko Sarvala FINNISH INTERNATIONAL DEVELOPMENT AGENCY FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Bujumbura, June 1995 The conclusions and recommendations given in this and other reports in the Research for the Management of the Fisheries on Lake Tanganyika Project series are those considered appropriate at the time of preparation. They may be modified in the light of further knowledge gained at subsequent stages of the Project. The designations employed and the presentation of material in this publication do not imply the expression of any opinion on the part of FAO or FINNIDA concerning the legal status of any country, territory, city or area, or concerning the determination of its frontiers or boundaries. PREFACE The Research for the Management of the Fisheries on Lake Tanganyika project (Lake Tanganyika Research) became fully operational in January 1992. It is executed by the Food and Agriculture Organization of the United Nations (FAO) and funded by the Finnish International Development Agency (FINNIDA) and the Arab Gulf Programme for United Nations Development Organizations (AGFUND). This project aims at the determination of the biological basis for fish production on Lake Tanganyika, in order to permit the formulation 0f a coherent lake—wide fisheries management policy for the four riparian States (Burundi, Tanzania, Zaïre and Zambia). Particular attention will be also given to the reinforcement of the skills and physical facilities of the fisheries research units in all four beneficiary countries as well as to the build— up of effective coordination mechanisms to ensure full collaboration between tha Governments concerned. -
Frequent Non-Random Shifts in the Temporal Sequence of Developmental Landmark
bioRxiv preprint doi: https://doi.org/10.1101/239954; this version posted April 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Title: Frequent Non-random Shifts in the Temporal Sequence of Developmental Landmark 2 Events during Teleost Evolutionary Diversification 3 4 Running head: Evolution of teleost developmental sequence 5 6 Authors 7 Fumihiro Ito1,2 *, Tomotaka Matsumoto2,3, Tatsumi Hirata2,4 8 1Mammalian Genetics Laboratory, Genetic Strains Research Center, National Institute of 9 Genetics, Mishima 411-8540, Shizuoka, Japan 10 2Department of Genetics, SOKENDAI (The Graduate University for Advanced Studies), 11 Mishima 411-8540, Shizuoka, Japan 12 3Division of Evolutionary Genetics, Department of Population Genetics, National Institute of 13 Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan. 14 4Division of Brain Function, National Institute of Genetics, Yata 1111, Mishima 411-8540, 15 Shizuoka, Japan. 16 17 *Correspondence author 18 1 bioRxiv preprint doi: https://doi.org/10.1101/239954; this version posted April 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 19 Abstract 20 Morphological transformations can be generated by evolutionary changes in the sequence of 21 developmental events. In this study, we examined the evolutionary dynamics of the 22 developmental sequence on a macroevolutionary scale using the teleost. Using the information 23 from previous reports describing the development of 31 species, we extracted the developmental 24 sequences of 19 landmark events involving the formation of phylogenetically conserved body 25 parts; we then inferred ancestral developmental sequences by two different parsimony-based 26 methods—event-pairing (Jeffery, Bininda-Emonds, Coates & Richardson, 2002a) and continuous 27 analysis (Germain & Laurin, 2009). -
Genetic and Developmental Origins of a Unique Foraging Adaptation in a Lake Malawi Cichlid Genus
Genetic and developmental origins of a unique foraging adaptation in a Lake Malawi cichlid genus Moira R. Conitha, Yinan Hub,c, Andrew J. Conithd, Maura A. Maginnisd, Jacqueline F. Webbb, and R. Craig Albertsond,1 aGraduate Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, MA 01003; bDepartment of Biological Sciences, University of Rhode Island, Kingston, RI 02881; cBiology Department, Boston College, Chestnut Hill, MA 02467; and dDepartment of Biology, University of Massachusetts, Amherst, MA 01003 Edited by Hopi E. Hoekstra, HHMI and Harvard University, Cambridge, MA, and approved May 29, 2018 (received for review November 13, 2017) Phenotypic novelties are an important but poorly understood from model organisms, which are selected in part because of their category of morphological diversity. They can provide insights into conserved phenotypes (16, 17). Additionally, novel phenotypes of- the origins of phenotypic variation, but we know relatively little ten have ancient origins and/or occur in lineages that are not about their genetic origins. Cichlid fishes display remarkable diversity amenable to laboratory investigations. Here, we address the origin in craniofacial anatomy, including several novelties. One aspect of this of a novel phenotype by identifying the genetic mechanisms un- variation is a conspicuous, exaggerated snout that has evolved in derlying tissue-level changes of a unique craniofacial morphology in a single Malawi cichlid lineage and is associated with foraging a genus of cichlid from Lake Malawi, Africa. Cichlids are an iconic model system for the study of rapid and specialization and increased ecological success. We examined the – developmental and genetic origins for this phenotype and found that extensive craniofacial diversification (18 20). -
Geography, Ecology, Sympatry, and Male Coloration in the Lake Malawi Cichlid Genus Labeotropheus (Perciformes: Cichlidae)
SAGE-Hindawi Access to Research International Journal of Evolutionary Biology Volume 2011, Article ID 575469, 12 pages doi:10.4061/2011/575469 Research Article One Fish, Two Fish, Red Fish, Blue Fish: Geography, Ecology, Sympatry, and Male Coloration in the Lake Malawi Cichlid Genus Labeotropheus (Perciformes: Cichlidae) Michael J. Pauers Section of Vertebrate Zoology, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233, USA Correspondence should be addressed to Michael J. Pauers, [email protected] Received 15 November 2010; Revised 15 February 2011; Accepted 28 March 2011 Academic Editor: Kristina M. Sefc Copyright © 2011 Michael J. Pauers. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. While sexual selection on male coloration has been important in haplochromine cichlid speciation, few studies to date have examined potential environmental influences on color pattern evolution. Data from multiple sources on male nuptial coloration of the Lake Malawi endemic genus Labeotropheus were used to examine the relationship between color patterns and the environments in which these patterns were found. Red- or carotenoid-pigmented males were concentrated in the northwestern portion of Lake Malawi and were also associated with increasing depth. Further, the presence or absence of L. fuelleborni influenced the coloration of L. trewavasae populations; when L. fuelleborni was present, L. trewavasae males were more likely to exhibit some degree of red coloration. While these results support the idea that sexual selection on male coloration is an important factor in the haplochromine speciation, they also underscore the importance of environmental influences on the evolution of color patterns. -
Genome-Wide Microrna Screening in Nile Tilapia Reveals
www.nature.com/scientificreports OPEN Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs’ transcription, sex-biased Received: 7 November 2016 Accepted: 15 May 2018 arm switching and increasing Published: xx xx xxxx complexity of expression throughout development Danillo Pinhal 1, Luiz A. Bovolenta2, Simon Moxon3, Arthur C. Oliveira1, Pedro G. Nachtigall1, Marcio L. Acencio4, James G. Patton5, Alexandre W. S. Hilsdorf6, Ney Lemke2 & Cesar Martins 7 MicroRNAs (miRNAs) are key regulators of gene expression in multicellular organisms. The elucidation of miRNA function and evolution depends on the identifcation and characterization of miRNA repertoire of strategic organisms, as the fast-evolving cichlid fshes. Using RNA-seq and comparative genomics we carried out an in-depth report of miRNAs in Nile tilapia (Oreochromis niloticus), an emergent model organism to investigate evo-devo mechanisms. Five hundred known miRNAs and almost one hundred putative novel vertebrate miRNAs have been identifed, many of which seem to be teleost-specifc, cichlid-specifc or tilapia-specifc. Abundant miRNA isoforms (isomiRs) were identifed with modifcations in both 5p and 3p miRNA transcripts. Changes in arm usage (arm switching) of nine miRNAs were detected in early development, adult stage and even between male and female samples. We found an increasing complexity of miRNA expression during ontogenetic development, revealing a remarkable synchronism between the rate of new miRNAs recruitment and morphological changes. Overall, our results enlarge vertebrate miRNA collection and reveal a notable diferential ratio of miRNA arms and isoforms infuenced by sex and developmental life stage, providing a better picture of the evolutionary and spatiotemporal dynamics of miRNAs. -
ASFIS ISSCAAP Fish List February 2007 Sorted on Scientific Name
ASFIS ISSCAAP Fish List Sorted on Scientific Name February 2007 Scientific name English Name French name Spanish Name Code Abalistes stellaris (Bloch & Schneider 1801) Starry triggerfish AJS Abbottina rivularis (Basilewsky 1855) Chinese false gudgeon ABB Ablabys binotatus (Peters 1855) Redskinfish ABW Ablennes hians (Valenciennes 1846) Flat needlefish Orphie plate Agujón sable BAF Aborichthys elongatus Hora 1921 ABE Abralia andamanika Goodrich 1898 BLK Abralia veranyi (Rüppell 1844) Verany's enope squid Encornet de Verany Enoploluria de Verany BLJ Abraliopsis pfefferi (Verany 1837) Pfeffer's enope squid Encornet de Pfeffer Enoploluria de Pfeffer BJF Abramis brama (Linnaeus 1758) Freshwater bream Brème d'eau douce Brema común FBM Abramis spp Freshwater breams nei Brèmes d'eau douce nca Bremas nep FBR Abramites eques (Steindachner 1878) ABQ Abudefduf luridus (Cuvier 1830) Canary damsel AUU Abudefduf saxatilis (Linnaeus 1758) Sergeant-major ABU Abyssobrotula galatheae Nielsen 1977 OAG Abyssocottus elochini Taliev 1955 AEZ Abythites lepidogenys (Smith & Radcliffe 1913) AHD Acanella spp Branched bamboo coral KQL Acanthacaris caeca (A. Milne Edwards 1881) Atlantic deep-sea lobster Langoustine arganelle Cigala de fondo NTK Acanthacaris tenuimana Bate 1888 Prickly deep-sea lobster Langoustine spinuleuse Cigala raspa NHI Acanthalburnus microlepis (De Filippi 1861) Blackbrow bleak AHL Acanthaphritis barbata (Okamura & Kishida 1963) NHT Acantharchus pomotis (Baird 1855) Mud sunfish AKP Acanthaxius caespitosa (Squires 1979) Deepwater mud lobster Langouste