Exhaustive Reanalysis of Barcode Sequences from Public
Exhaustive reanalysis of barcode sequences from public repositories highlights ongoing misidentifications and impacts taxa diversity and distribution: a case study of the Sea Lettuce. Antoine Fort1, Marcus McHale1, Kevin Cascella2, Philippe Potin2, Marie-Mathilde Perrineau3, Philip Kerrison3, Elisabete da Costa4, Ricardo Calado4, Maria Domingues5, Isabel Costa Azevedo6, Isabel Sousa-Pinto6, Claire Gachon3, Adrie van der Werf7, Willem de Visser7, Johanna Beniers7, Henrice Jansen7, Michael Guiry1, and Ronan Sulpice1 1NUI Galway 2Station Biologique de Roscoff 3Scottish Association for Marine Science 4University of Aveiro 5Universidade de Aveiro 6University of Porto Interdisciplinary Centre of Marine and Environmental Research 7Wageningen University & Research November 24, 2020 Abstract Sea Lettuce (Ulva spp.; Ulvophyceae, Ulvales, Ulvaceae) is an important ecological and economical entity, with a worldwide distribution and is a well-known source of near-shore blooms blighting many coastlines. Species of Ulva are frequently misiden- tified in public repositories, including herbaria and gene banks, making species identification based on traditional barcoding hazardous. We investigated the species distribution of 295 individual distromatic foliose strains from the North East Atlantic by traditional barcoding or next generation sequencing. We found seven distinct species, and compared our results with all worldwide Ulva spp sequences present in the NCBI database for the three barcodes rbcL, tuf A and the ITS1. Our results demonstrate a large degree of species misidentification in the NCBI database. We estimate that 21% of the entries pertaining to foliose species are misannotated. In the extreme case of U. lactuca, 65% of the entries are erroneously labelled specimens of another Ulva species, typically U. fenestrata. In addition, 30% of U.
Editor: Pastor G L Winter – [email protected] Vol LIV November - December 2019 No 6 Contents: Page 65: What Luther Says About—Spiritual Liberty Page 66: Devotion—Matthew 21:1–11 – Part 1B—Pastor T Winter Page 67: Dear Christian, Don’t Be Unequally Yoked with the Godless, Corrupt World!—Pastor B Winter Page 70: How Firm a Foundation—Part 2—Pastor S Wood Page 71: Christmas Greetings Page 72: Latest news in Archelogy Page 75: The Happy Farmer Page 75: Notes and News …………………………………………………………………………………………………………………… W h a t L u t h e r S a y s A b o u t — Spiritual Liberty A Glorious Liberty that is a Blessed Bondage. A Christian is a free lord of all and subject to no one. A Christian is a ministering servant of all and subject to everyone. (SL 19, 988) A Liberty of the Soul of Man. We are not dealing with political liberty but with a different one— one which the devil intensely hates and opposes. It is “the liberty wherewith Christ hath made us free,” not from some human servitude of Babylonian or Turkish captivity but from eternal wrath. Where? In the conscience. There our liberty stays. It does not go any further; for Christ did not free us in the political and in the carnal sense but in the theological or spiritual sense, that is, He has so freed us that our conscience is free and glad because it does not fear the wrath that is to come. This is real and inestimable liberty, in comparison with the greatness and majesty of which the others (political and carnal) scarcely are one drop or speck.
Long Term Remedial Measures of Sedimentological Impact Due to Coastal Developments on the South Eastern Mediterranean Coast
Littoral 2002, The Changing Coast. EUROCOAST / EUCC, Porto – Portugal Ed. EUROCOAST – Portugal, ISBN 972-8558-09-0 LONG TERM REMEDIAL MEASURES OF SEDIMENTOLOGICAL IMPACT DUE TO COASTAL DEVELOPMENTS ON THE SOUTH EASTERN MEDITERRANEAN COAST Dov S. Rosen1,2 1Head, Marine Geology & Coastal Processes Department, Israel Oceanographic and Limnological Research (IOLR), Tel Shikmona, POB 8030, Haifa 31080, Israel, Tel: 972-48515205, Fax: 972-48511911, email: [email protected]. 2Director General, Sea-Shore-Rosen Ltd., 2 Hess St., Haifa 33398, Israel, Tel:972-48363331, fax: 972-48374915, mobile: 972-52844174, email:[email protected] Abstract Coastal developments in the 20th century in the South-eastern Mediterranean coast have al- ready induced sedimentological impacts, expressed as coastal erosion, silting of marinas and other protected areas, and cliff retreat. New development activities are underway or planned for implementation in the near future. The forecasted future sea-level rise (already apparently detected in the last decade in the Eastern Mediterranean) and storm statistics change due to global warming, as well as future diminishing of longshore sand transport in the Nile cell, add to the increased sensitivity of coastal development in this region. This paper presents a review of the various projects underway or due to be implemented in the next few years, discusses in an integrated manner the outcome of various field and model studies on the sedimentological impacts of these developments, and presents a series of re- medial
Administrative Seat: University of Sfax, Tunisia University of Messina, Italy National School of Engineers of Sfax Department of Chemical, Biological, Biological Engineering Department Pharmaceutical and Environmental Sciences Unité de Biotechnologie des Algues Doctorate in Applied Biology and Doctorate in Biological Engineering Experimental Medicine – XXIX Cycle DNA barcoding identification of the macroalgal flora of Tunisia Ramzi MILADI Doctoral Thesis 2018 S.S.D. BIO/01 Supervisor at the University of Sfax Supervisor at the University of Messina Prof. Slim ABDELKAFI Prof. Marina MORABITO TABLE OF CONTENTS ACKNOWLEDGEMENTS ........................................................................................... 3 ABSTRACT ..................................................................................................................... 6 1. INTRODUCTION ...................................................................................................... 8 1.1. SPECIES CONCEPT IN ALGAE ..................................................................................... 9 1.2. WHAT ARE ALGAE? ................................................................................................. 11 1.2.1. CHLOROPHYTA ....................................................................................................... 12 1.2.2. RHODOPHYTA ........................................................................................................ 13 1.3. CLASSIFICATION OF ALGAE ....................................................................................
Page 1 A REVIEW OF SEA LEVEL MONITORING STATUS IN ISRAEL Dov S. Rosen Israel Oceanographic & Limnological Research, Tel Shikmona, Haifa 31080, Israel Introduction Sea-levels have been measured since the early 1920’s at Jaffa fishing port, but these data are not available, except for some data found at the PSMSL in UK during the 1950’s. New sea-levels were gathered at Ashdod and Haifa ports, and since 1992 at Hadera. Recently sea-level is being recorded also in Tel-Aviv, inside the Gordon marina, and at Ashkelon marina. The information presented in this report was derived using historic sea-level data gathered originally by PRA and archived at the Permanent Service for Mean Sea-Level (PSMSL) in UK. Additional sea-level data were gathered in the recent years by IOLR for PRA in Haifa. Correlation between simultaneous data gathered at Haifa and Ashdod in the past, and between Haifa and Hadera in the recent years allowed determining the relationship between long-term elevations at Haifa, Hadera and Ashdod. Recent History of Sea-Level Monitoring on the Mediterranean Coast of Israel Sea-level has been monitored in Israel during the British mandate in Jaffa harbour, in Haifa port and in Eilat. The measurements were performed using a float-type mechanical mareograph (sea-level recorder as in fact it measures the total sea-level due to astronomic tide as well as other parameters (temperature, atmospheric pressure, wind surge, wave induced set-up, etc.). However, the records of sea-level data gathered during the period prior to the establishment of the State of Israel are not available and have probably been lost forever.
165 Has Tekhelet been Found? By: MENACHEM EPSTEIN While thousands of Jews around the world have recently begun adding what they are convinced is tekhelet to their ziẓ iṭ , a recent article published in Flatbush and distributed throughout America (Halacha Berurah vol. 9, issue 2, “The Search for Techeiles”°) claims that no one “has presented any concrete proof that the murex techeiles is genuine,” and “that there are clear indicators that neither the chilazon nor techeiles have any connection to the murex techeiles.” In this article, the author demonstrates why these statements are entirely baseless. The possibility of the murex snail being the hillazoṇ of tekhelet has been under consideration for a considerable amount of time. Until recently almost all rabbis rejected this possibility out of hand simply because the dye of the murex is purple. From our tradition we know without a doubt that tekhelet is blue.1 In 1983 a startling discovery was ° Halacha Berurah is published by Tzeirei Agudas Yisroel. Following the title of the referenced article it states, “Reviewed by Horav Shlomo Miller,” and at the end of the article it states, “Halacha Berurah is deeply grateful to Dr. Mendel Singer PhD, School of Medicine, Cleveland, Ohio and Dr. Yoel (Jonathan) Ostroff, Department of Computer Sci- ence and Engineering, York University, Toronto, Canada for reviewing this article.” 1 Rav Herzog in his doctoral thesis written in 1913 suggested that the murex would be the most likely candidate, if not for the fact that it produced a purple dye. This manuscript was later edited and published as “The Royal Purple and the Biblical Blue” by Keter 1987.
Ulvales, Ulvophyceae) in Mikawa Bay, Japan, Deduced from ITS2 Rdna Region Sequences
Algae Volume 22(3): 221-228, 2007 Species Diversity and Seasonal Changes of Dominant Ulva Species (Ulvales, Ulvophyceae) in Mikawa Bay, Japan, Deduced from ITS2 rDNA Region Sequences Hiroshi Kawai1*, Satoshi Shimada2, Takeaki Hanyuda1, Teruaki Suzuki3 and Gamagori City Office4 1Kobe University Research Center for Inland Seas, Rokkodai, Nadaku, Kobe 657-8501, Japan 2Creative Research Initiative ‘Sousei’, Hokkaido University, Sapporo, 060-0810 Japan 3Aichi Fisheries Research Institute, Gamagori 443-0021, Japan 4Asahimachi, Gamagori 443-8601, Japan Frequent occurrences of green tides caused by Ulva species (Ulvales, Ulvophyceae) associated with eutrophication along enclosed coasts are currently causing environmental problems in coastal ecosystems. In addition, increasing intercontinental introductions of coastal marine organisms, including Ulva, are also a serious issue. However, due to the considerable morphological plasticity of this genus, the taxonomy of Ulva species based on morphological stud- ies is problematic. Therefore, in order to elucidate the species diversity and seasonal changes of the dominant Ulva species in Mikawa Bay, central Honshu, Japan, we made seasonal collections of Ulva species at seven localities, and identified the dominant species using the ITS2 rDNA region sequences. We identified the following nine taxa as common Ulva species in the area: 1) Ulva pertusa Kjellman; 2) U. ohnoi Hiraoka et Shimada; 3) U. linza L.; 4) U. califor- nica Wille; 5) U. flexuosa Wulfen; 6) U. fasciata Delile; 7) U. compressa L.; 8) U. armoricana Dion et al.; 9) U. scandinavica Bliding. Among the species, U. pertusa was most common and dominant from spring to summer, and U. ohnoi from autumn to winter. Ulva californica and U.
Developing Systems for the Commercial Culture of Ulva Species in the UK
Developing systems for the commercial culture of Ulva species in the UK Guang Gao A thesis submitted to Newcastle University in candidature for the Degree of Doctor of Philosophy School of Marine Science and Technology May 2016 Abstract The green seaweed, Ulva, is highly valued in terms of animal feed, food and biofuel, as well in the delivery of crucial remediation services including wastewater treatment and CO2 removal. Accordingly, Ulva cultivation has gained significant research interest worldwide. Notwithstanding these research efforts, Ulva cultivation is still in its infancy and knowledge to underpin such developments remains limited. A common challenge in Ulva cultivation is the fluctuating productivity with time due to vegetative fragmentation and/or periodic reproduction. In this study, three methods were employed to address this challenge. Firstly, culture conditions were optimised to establish a balance between growth and reproduction. Secondly, a refined culture method was developed, which more than tripled growth of Ulva over an 18-day cultivation as compared to a standard method. Thirdly, a sterile strain was obtained by mutating a wild strain with ultraviolet radiation. This new strain grew five times faster over an 18-day cultivation and absorbed nitrate and phosphate 40.0% and 30.9% quicker compared to the wild strain respectively. The chemical composition of the sterile strain showed a lipid content of more than double that of the wild strain, while the protein content was 26.3% lower than the wild strain. Several tissue preservation techniques were developed to enable settlement and growth trials to be conducted on demand. The merits or otherwise of the preservation techniques were determined for gametes, germlings and thalli.
{PDF EPUB} the Cobra and Scarab a Novel of Ancient Egypt by Glenn Starkey Ihr Link Zur Ex Libris-Reader-App
Read Ebook {PDF EPUB} The Cobra and Scarab A Novel of Ancient Egypt by Glenn Starkey Ihr Link zur Ex Libris-Reader-App. Geben Sie Ihre E-Mail-Adresse oder Handynummer ein und Sie erhalten einen direkten Link, um die kostenlose Reader-App herunterzuladen. Die Ex Libris-Reader-App ist für iOS und Android erhältlich. Weitere Informationen zu unseren Apps finden Sie hier. Kartonierter Einband 84 Seiten. Kartonierter Einband. Beschreibung. Klappentext. Source: Wikipedia. Pages: 82. Chapters: Gardens in Israel, Jewish National Fund forests and parks, National parks of Israel, Masada, Caesarea Maritima, Achziv, Lachish, Shivta, Qumran, Beit She'an, Tzippori, Capernaum, Tel Megiddo, Mount Tabor, Hippos, Ein Avdat, Tel Hazor, National parks and nature reserves of Israel, Khirbat al-Minya, Herodium, Beit Guvrin National Park, Makhtesh Ramon, Ramat HaNadiv, Beit She'arim National Park, Eleutheropolis, Ein Gedi, Canada Park, Al Qastal, Palestine, Tel Arad, Montfort Castle, Jezreel, Yarkon River, Arsuf, Gezer, Nimrod Fortress, Shrine of Bahá'u'lláh, Yatir Forest, Yarkon Park, Ashdod Sand Dune, Maresha, Mount Arbel, Belvoir Fortress, Wohl Rose Park, Ben-Gurion International Airport Garden, Terraces, Beit Alfa, Rosh HaNikra grottoes, Nitzana, Mamshit, Archaeological sites in Israel, Tel Be'er Sheva, Sidna Ali Mosque, Castel National Park, Ein Hemed, Garden of the King, Nahal Alexander, Island of Peace, Australian Soldier Park, Hurshat Tal, City of David National Park, Hamat Tiberias, Samaria, Israel Nature and Parks Authority, Jerusalem Forest, Neot Kedumim, Mazor Mausoleum, Ashkelon National Park, Alexandrium, Gazelle Valley, Gan HaShlosha National Park, Tel Shikmona, Migdal Afek, HaSharon Park, Ramat Gan National Park, The Garden of Mordy, Eshtaol Forest, Emek Tzurim National Park, Bar'am National Park.
Vol. 485: 143–154, 2013 MARINE ECOLOGY PROGRESS SERIES Published June 27 doi: 10.3354/meps10313 Mar Ecol Prog Ser Population genetic structure and modes of dispersal for the colonial ascidian Botryllus schlosseri along the Scandinavian Atlantic coasts Eitan Reem1,3,*, Ipsita Mohanty1, Gadi Katzir2,3, Baruch Rinkevich1 1Israel Oceanography and Limnological Research, National Institute of Oceanography, Tel Shikmona, PO Box 8030, Haifa 31080, Israel 2Department of Marine Biology, Faculty of Science and Science Education, University of Haifa, Haifa 31905, Israel 3Department of Evolutionary and Environmental Biology, Faculty of Science and Science Education, University of Haifa, Haifa 31905, Israel ABSTRACT: The colonial ascidian Botryllus schlosseri is a well-known cosmopolitan invader of sheltered temperate marine communities which has garnered major scientific attention. We ana- lyzed modes of dispersal and population genetic structures for 11 populations of B. schlosseri along the Scandinavian coasts, using 5 microsatellite loci. The analysis revealed high poly - morphism, resulting in 108 different alleles (of which 58 were private alleles), positive correlations between the number of sites shared by specific alleles and their mean frequencies, and lower genetic diversity values than in previously studied worldwide populations. A complex network of gene flow among sampled populations was revealed, with 2 clades, southeastern and northwest- ern, and higher genetic variation in the latter clade due to either restricted gene flow or more intensive genetic drift. A detailed analysis of allele frequencies revealed possible ancestral alleles. By using Bayesian analysis, 9 previously studied populations from Britain and European Atlantic coasts were compared, encompassing a single geographical entity along thousands of kilometers from Gibraltar (36° 8’ N) to Ålesund, Norway (62° 29’ N).