Up-regulated in medulloblastoma

accession # Development M93275 ADFP, adipose differentiation related D43694 MATH-1, homolog of atonal 1 M64068 Bmi-1, protein AW124785 Midnolin, midbrain nucleolar protein AI843178 Cla3, Cerebellar ataxia 3 D10712 Nedd1, Neural precursor cell expressed, developmentally down-regulated 1 AB011678 Doublecortin, for neurogenesis M57683 mPDGF-alpha-R, PDGF alpha U41626 DSS1, deleted in split hand/split foot 1 homolog (Dss1), for limb development AB010833 PTCH2, patched 2, Mouse homolog of yeast CDC46 NP_034226 Ebf3, early B-cell factor 3 AI846695 Qk, Quaking U63386 Edr1 Early development regulator 1 (homolog of polyhomeotic 1), Mph1 AI043016 Rnf2, Ring finger protein 2 X69942 Enhancer-trap-locus 1, for transcription regulation AF100694 Ruvbl1, Ruv-B like protein 1, DNA helicase AW123618 Fzd2, Frizzled homolog 2 U88566 Sfrp1, secreted frizzled related protein 1 AA681520 Geminin-pending, for embryogenesis and morphogenesis U88567 Sfrp2, secreted frizzled related protein 2 AB025922 Gli1, GLI-Kruppel family member 1 AF089721 Smo, Smoothened X99104 Gli2, GLI-Kruppel family member 2 AF009414 SOX11, SRY-box containing gene 11 U61362 Grg1, groucho-related gene 1, Tle1, -like enhancer of split 1 U85614 SRG3, Smarcc1, SWI/SNF related, matrix associated, action dependent regulator of chromatin, subfamily, member 1 M97506 Hen1, helix-loop-helix protein AI837838 Tmeff1, Transmembrane protein with EGF-like and two follistatin-like domains 1 U79748 Madh4, MAD homolog 4, for transcription regulation AV109962 Traf4, TNF receptor associated factor 4 NM_007896 Mapre1, Microtubule-associated protein, RP/EB family, member 1 Y10026 TEF-1, Tead2, TEA domain family member 2 M60474 MARCKS, myristoylated alanine-rich C-kinase substrate, for brain development

accession # Cell cycle/maintenance AV309347 Ki67, Antigen identified by monoclonal antibody Ki 67 D63784 MIDA1, mouse Id associate 1, Zrf2 Zuotin related factor 2 NM_008506 L- U83902 Mad2, Mitotic checkpoint component Mad2 L32751 (clone M1) GTPase () M12848 Myb, myeloblastosis oncogene, proto-oncogene mRNA encoding 71 kd protein AI842771 Anp32b, Acidic nuclear phosphoprotein 32 family, member B M12731 N-myc U80932 Ayk1, serine/threonine kinase Ayk1, Stk6, serine/threonine kinase 6 AI843682 Nras, neuroblastoma ras oncogene U32446 Brca1 M38724 p34 Cdc2, Cdc2a, AF002823 Bud1, mitotic checkpoint AA764261 Pim1, Proviral integration site 1, protein kinase L16926 Cdc25c, cell division cycle 25 homolog c U01063 pLK, serine/threonine kinase, Polo-like kinase homolog, protein serine/threonine kinase AW061324 Cdc20, cell division cycle 20 AF069051 Pttg1, Pituitary tumor-transforming 1 AJ223087 Cdc6, Cell division cycle 6 homolog CAC14659 Retinoblastoma-associated protein homolog p107 L01640 Cdk4, -dependent kinase 4, D-type G1 cyclin catalytic subunit (PSK-J3/CDK4) M34094 MK, retinoic acid-responsive protein AF011644 Cdkap1, CDK2 (cyclin-dependent kinase 2)-asscoaited protein 1 AW048730 Sgpl1, Sphingosine phosphate lyase 1, sphinganine-1-phosphate aldolase AF016583 Chk1, checkpoint kinase chk1 AF062378 SHA1, Calmbp1, calmodulin-binding protein 1 AF086905 Chk2, Rad53, protein serine/threonine kinase AB025409 sid1334p, Cks1, CDC28 protein kinase 1 L00039 c-Myc AF038848 Sin3B, transcriptional repressor Sin3B, X75483 Cyclin A2 AF008914 sst2A, somatostatin receptor type 2 X64713 Cyclin B1 L29480 Stk18, Serine/threonine kinase 18 X66032 Cyclin B2 AW209238 Tacc3, Transforming, acidic coiled-coil containing protein 3 AI849928 Cyclin D1, cyclin-like protein, induced by colony-stimulating factor 1 AJ249987 TAFII30, Taf10 TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30 kDa Medulloblastoma array analyses, mouse U74Av2 gene list 1 Lee, Y et al., St. Jude Children’s Research Hospital M83749 Cyclin D2 X02891 Growth hormone NM_007900 Ect2, oncogene Ect2 AK002576 Int6, mammary tumor integration site 6 M21828 Gas2, Growth arrest specific 2

accession # Checkpoint/repair NM_009687 APEX nuclease, Apurinic/apyrimidinic endonuclease U93583 RAD51-binding protein U89652 Brca2 D13803 RecA-like protein MmRad51 X66323 p80 Ku autoantigen AF069519 T:G mismatch-specific thymine-DNA glycosylase TDGb isoform

accession # U54803 Caspase 3 AB013819 TIAP, Birc5, Baculoviral IAP repeat-containing 5 AF027707 Mtd, Bok, Bcl-2 related ovarian killer protein X06407 Tpt1 Tumor protein, translationally-controlled 1 AF033115 Siva

accession # L32752 (clone M2) GTPase (Ran), Rasl2-9 RAS-like, family 2, locus 9 X69722 Insulin receptor substrate 1 AB020202 Ak2, adenylate kinase isozyme 2 AI317205 MAP3K1, mitogen activated protein kinase kinase kinase 1 M86377 Esk kinase, Ttk protein kinase U88984 MAP4K4, Mitogen-activated protein kinase kinase kinase kinase 4 AW123850 F2r, Coagulation factor II (thrombin) receptor L21707 MRK, receptor tyrosine kinase mrk, Ryk Receptor-like tyrosine kinase X61399 F52 for a novel protein, Mlp, MARCKS-like protein AW047978 Prss25, Protease, serine, 25, serine-type endopeptidase D29802 Gnb2-rs1, Guanine nucleotide binding protein, beta 2, related sequence 1 AW122347 Racgap1, Rac GTPase-activating protein 1 AI957190 Gnai3, guanine nucleotide binding protein, alpha inhibiting 3 XP_122425 Smoc1, secreted modular calcium binding protein 1 AI843396 Gng10, Guanine nucleotide binding protein (), gamma 10 AI840130 Srcasm, Src activating and signaling molecule AW123750 Gng2, Guanine nucleotide binding protein (G protein), gamma 2 subunit L09562 PTPRG, protein tyrosine phosphatase, receptor type, G AI841654 Gpr56, G protein-coupled receptor 56 AB006141 IGFBP-like protein, insulin-like growth factor binding protein like protein

accession # DNA/RNA processing D00812 Rpa2, 30-kDa subunit of replication protein A AF022465 HMG-4, Hmgb3, high mobility group box 3 L32836 Ahcy, S-adenosylhomocysteine hydrolase AF031568 hnRNPG, heterogeneous nuclear ribonucleoprotein G AF041476 Baf53a-pending, BRG1/brm-associated factor 53A AAM14132 Hnrpd, Heterogeneous nuclear ribonucleoprotein D AB025349 Bcrp1-pending, Breakpoint cluster region protein 1, BAF M33934 IMP dehydrogenase (EC 1.2.1.14 Z35401 C3H gene for histone H2A.X, H2afx H2A histone family, member X AA823653 Incenp, inner centromere protein AF012710 Cenp-a, centromere protein A , histone H3 variant AA929330 Mcmd, Mini maintenance deficient, P1 protein X77731 Deoxycytidine kinase D26089 Mcmd4, Mini chromosome maintenance deficient 4 homolog AB013912 Ruvbl2, RuvB-like protein 2, DNA helicase D26090 Mcmd5, mini chromosome maintenance deficient 5, CDC46 D13546 Pola2, Polymerase (DNA directed), alpha 2 D26091 Mcmd7, Mini chromosome maintenance deficient 7 D13543 Pola1, Polymerase (DNA directed), alpha 1 D86725 mMCM2, Mini chromosome maintenance deficient 2 AF036008 DNMT1, DNA (cytosine-5)-methyltransferase (Dnmt1) AW107230 Nap1l1, Nucleosome assembly protein 1-like 1 AI845934 Ebp2, EBNA1 binding protein 2 AF034610 NASP, nuclear autoantigenic sperm protein (histone binding)

Medulloblastoma array analyses, mouse U74Av2 gene list 2 Lee, Y et al., St. Jude Children’s Research Hospital AB025015 Elongin A, Tceb3 Transcription B (SIII), polypeptide 3 (110kD) AI836205 Nme4, expressed in non-metastatic cells 4 NM_007971 Ezh2, ehnancer of zeste homolog 2, transcriptional regulator AI846392 Nsap1-pending, NS1-associated protein 1 Z22593 Fibrillarin X68193 Nme2, Expressed in non-metastatic cells 2, protein (NM23B) (nucleoside diphosphate kinase) AF073993 hnRNP A2/B1, Heterogenous nuclear ribonucleoprotein A2/B1 D14336 Paf53, RNA polymerase I associated factor (PAF53) AW120557 Lsm4-pending, U6 snRNA-associated SM-like protein 4 X57800 PCNA, proliferating cell nuclear antigen AI837853 Snrpd2, Small nuclear ribonucleoprotein D2 AF024570 Pold1, DNA polymerase delta catalytic X67668 High mobility group 2 protein NM_008774 poly(A) binding protein, cytoplasmic 1 M29260 histone 1-0 J04620 Prim1, DNA primase, p49 subunit M33988 Histone H2A.1 D13545 Prim2, DNA primase, p58 subunit U62674 Histone H2a.2-615 (H2a-615), and histone H3.2-615 (H3-615 AA690061 Rbm8, RNA binding motif protein U70494 Histone H2A.Z, H2afz H2A histone family, member Z NM_009103 Rrm1, Ribonucleotide reductase subunit M1 X53476 HMG-14, Hmgn1, high mobility group nucleosomal binding domain 1 L32836 S-adenosyl homocysteine hydrolase (ahcy), copper binding protein X12944 HMG-17, Hmgn2, high mobility group nucleosomal binding domain 2 AI838274 Slc29a1, solute carrier family 29 (nucleoside transporters), member 1 U01915 Topo-2a, DNA topoisomerase II alpha X65704 Small nuclear ribonucleoprotein E AU044050 Tyms, Thymidylate synthase X60980 TK1, thymidine kinase 1 X96767 Snrp1c, U1 small nuclear ribonucleoprotein 1C U1 snRNP-specific protein C AA624336 Tmk, Thymidylate kinase X63020 Snrpb2 U2 small nuclear ribonucleoprotein B

accession # AAD28370 ATFx , Activating transcription factor 5 U31758 Hdac2, Histone deacetylase 2 AI844392 2e2, General transcription factor IIE, polypeptide 2 (beta subunit, 34kD BAA92776 Mlt1, IA-1, insulinoma-associated protein 1 U89876 Aly, transcriptional coactivator ALY X89749 mTGIF, TG interacting factor M88301 brain-4 class III POU-domain Y07686 NfiB3-protein, /B, splice variant, splice variant, missing exons 9,10 & 11, 12 is in different ORF AAM20126 Cebpa-rs1, CCAAT/enhancer binding protein alpha (C/EBP), related sequence 1 U28656 PHAS-1, Eif4ebp1, eukaryotic 4E (eIF-4E) binding protein1 L03279 Core-binding factor beta AB001927 G3bp-pending, ras-GTPase-activating protein SH3-domain binding protein X72310 DRTF-polypeptide-1 (DP-1), Tfdp1 Transcription factor Dp 1 L35032 SOX18, HMG-box transcription factor AV301683 , transcription factor 1 D76432 Zfhx1a, Zinc finger 1a, transcriptional repressor deltaEF1 NM_008021 Foxm1, Forkhead box M1 U33196 Y-box binding protein mYB-1a, Nsep1, nuclease sensitive element binding protein 1 AF064088 GIF, trnascription factor NM_018759 Zfp326, Zinc finger protein 326

accession # Protein processing and expression AI850850 Mrpl52, Mitochondrial L52 AW048899 Rps19, ribosomal protein S19 AW045665 Mamr1, Laminin receptor 1 (67 kD, ribosomal protein SA) NM_008503 Rps2, ribosomal protein S2 X15267 Acidic ribosomal phosphoprotein PO X76772 Rps3, ribosomal protein S3 M93980 Rpl10, Ribosomal protein 10 AI835709 Rps25 Ribosomal protein S25 AV104703 Rpl10a Ribosomal protein L10A AI844457 Rps27a Ribosomal protein S27a AU020239 Rpl12, ribosomal protein L12 AAM14127 Rps28, ribosomal protein S28 U28917 Rpl13, ribosomal protein L13 Z83368 Rps3a, Ribosomal protein S3a AI839717 Rpl18, ribosomal protein L18 M73436 Rps4x, Ribosomal protein S4 M62952 Rpl19, Ribosomal protein L19 U78085 Rps5, ribosomal protein S5 AV099015 Rpl23, Ribosomal protein L23 Z54209 Rps6,

Medulloblastoma array analyses, mouse U74Av2 gene list 3 Lee, Y et al., St. Jude Children’s Research Hospital AI835315 Rpl23a, Ribosomal protein L23a AF043285 Rps7, ribosomal protein S7 X05021 Rpl27a, Ribosomal protein L27a X73829 Rps8, Ribosomal protein S8 X74856 Rpl28, Ribosomal protein L28 U67770 Rps26, ribosomal protein S26 Y00225 Rpl3, Ribosomal protein L3 X51528 Rpl13a Ribosomal protein L13a, tum- transplantation antigen P198 K02928 Rpl30, Ribosomal protein L30 AJ223208 Cathepsin S AW045418 Rpl44, Ribosomal protein L44 AV370410 Cct6a, Chaperonin subunit 6a (zeta X83590 Rpl5, Ribosomal protein L5 M74227 Cyp c, cyclophilin C, peptidylprolyl isomerase C X81987 Rpl6, Ribosomal protein L6, TAX responsive element binding protein 107 U74683 Cathepsin M29015 Rpl7, Ribosomal protein L7 AI132207 Eif1a, initiation factor 1A, M14689 Rpl7a, Ribosomal protein L7a AW061243 Eif2a, eukaryotic translation initiation factor 2A U67771 Rpl8, Ribosomal protein L8 AW125491 Eif2s2, eukaryotic translation initiation factor 2, subunit 2, (beta, 38 kDa) U93864 Rps11, Ribosomal protein S11 X03039 eIF-4A, initiation factor eIF-4AI, Eif4a1 Eukaryotic translation initiation factor 4A1 X15962 Rps12, ribosomal protein S12 M17878 Eef1a1, Eukaryotic translation elongation factor 1 alpha 1, elongation factor Tu M11408 Rps16, Ribosomal protein S16 X58990 Ppib, Peptidylprolyl isomerase B, mCyP-S1 for cyclophilin CyP-S1

accession # Metabolism M84147 Adh-2, alcohol dehydrogenase-B2 U51167 Idh2, Isocitrate dehydrogenase 2 (NADP+), mitochondrial, isocitrate dehydrogenase NM_021272 B-FABP, brain fatty acid binding protein 7 M12330 Ornithine decarboxylase (EC 4.1.1.17) U49350 CTP synthetase, Ctps Cytidine 5'-triphosphate synthase M14223 Ribonucleotide reductase subunit M2 AF004106 Ddah2, Dimethylarginine dimethylaminohydrolase 2 AA913994 Shmt1, serine hydroxymethyl transferase 1 (soluble) J05277 Hexokinase I (EC 2.7.1.1) AI843895 Srebf1, sterol regulatory element binding factor 1 Y11666 hexokinase II AB027565 Txnrd1, Thioredoxin reductase 1

accession # Cytoskeleton/tubules X04663 Tubb5, Tubulin, beta 5, Beta-tubulin (isotype Mbeta 5) AI591702 Kinesin-like 5 (mitotic kinesin-like protein 1 X04663 Beta-tubulin [AA 1-444] (79 is 1st base in codon) AJ223293 kinesin-related mitotic motor protein AI121796 Ckap2, cytoskeleton associated protein 2 L00923 Myo1b, Myosin Ib, Myosin I AI314784 Dnahc11, Dynein, axon, heavy chain 11 AW120739 Nude-pending, Nuclear distribution gene E homolog (Aspergillus) D12646 Kif4, Kinesin heavy chain member 4 AF002283 Pdlim3, PDZ and LIM domain 3 NM_009510 Villin2, ezrin

accession # Channel/transport AJ223066 Fabpe, epidermal-type fatty acid binding protein AV059766 Rab6kifl, Rab6, kinesin-like AV097950 Ftl1, ferritin light chain 1 Y09632 Rabkinesin-6 D55720 Kpna2, Karyopherin (importin) alpha2 AB017189 Slc7a5, sulute carrier family 7 (cationic amino acid transporter, y+ system) member 5 U75215 Slc1a4, solute carrier family 1 (glutamate/neutral amino acidd transporter), member 4, ASCT1 AF085809 SynI, synapsin Ib AW121948 Nup62, Nucleoporin 62 AA655369 Timm8a, translocase of inner mitochondrial membrane 8 homolog a (yeast) M89777 Rab3D, GTP-binding protein (Rab3D)

Medulloblastoma array analyses, mouse U74Av2 gene list 4 Lee, Y et al., St. Jude Children’s Research Hospital accession # Immune response/defense X78683 Bcap37, B-cell receptor-associated protein 37 Z80112 lcr-1, chemokine (C-X-C) receptor 4 CAA63535 C1qc, Complement component 1, q subcomponent, c polypeptide U25691 LSH, lymphocyte specific helicase M22531 C1qb, Complement component 1, q subcomponent, b polypeptide NM_017372 Lysozyme M M63695 CD1.1 X51547 Lzp-s, P lysozyme structural M63697 CD1.2 L20315 Mpeg1, macrophage expressed gene 1 M58661 Cd24a, CD24a antigen AF020200 PBX3b, transcription factor PBX3b D16432 CD63 X56135 prothymosin alpha L08115 CD9 AB007136 Psme1, Proteasome (prosome, macropain) 28 subunit, alpha AF024637 DAP12, Tyrobp, TYRO protein tyrosine kinase binding protein AJ250723 Sint1, septin-like protein Sint1 U16959 FKBP51 AW124153 SOX4 AI843732 H13, Histocompatibility 13 U38967 Tmsb4x, Thymosin, beta 4, X chromosome, NM_008332 IFIT-2, interferon-induced protein with tetratricopeptide repeats 2

accession # Etc D85904 Hspa4, Heat shock 70 kDa protein 4, Apg-2 M33212 Nucleolar protein N038, Npm1, Nucleophosmin 1 D14485 Csda, Cold shock domain protein A X07699 Nucleolin AA919594 Elastin U57686 Efs, Embryonal Fyn-associated substrate , p130 Cas-related protein Sin AI854811 Nol1, nucleolar protein 1 U96746 Prdx4, peroxiredoxin 4, thiol peroxidase AF053232 Nol5, nucleolar protein 5 AB016424 Rbm3, Rbm3 RNA binding motif protein 3 AI851198 Nola1, nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs D13003 Reticulocalbin D87908 Np95, nuclear protein np95 AB015598 Tim1, timeless homolog U53208 Dnajc2, DnaJ (Hsp40) homolog, subfamily C, member 2, Zrf1, zuotin related factor 1

accession # Unknown AAL14459 G7e-pending, viral envelope like protein G7e AI837110 EST AI850362 Uck2-pending, Uridine-cytidine kinase 2 AI837260 EST, possibly calpain 2, (m/II) large subunit (CAPN2) AI852645 Trip13, thyroid interactor 13 AI837415 EST AF053454 Tspan-6, tetraspan TM4SF, transmembrane 4 superfamily AI838320 EST AW046443 Tmpo, thymopoietin AI838344 EST, possibly cell divison cycle associated 4 (CDCA4) AI852553 Tmsb10, Thymosin, beta 10 AI838470 EST U39074 Thymopoietin beta AI838951 EST M35797 Tcp1-rs1, T-complex protein 1, related sequence 1 AI839109 EST, possibly TNF-induced protein (GG2-1) U64033 Tera, teratocarcinoma expressed AI839362 EST AB024713 Supl15h, Mpdu1 Mannose-P-dolichol utilization defect 1 AI839895 EST, possibly SEC13-like 1 (SEC13L1), X85169 SURF-5, surfeit locus protein 5 AI840158 EST AW060597 Snrpg, small nuclear ribonucleoprotein polypeptide G AI840458 EST, possibly RAS protein activator like 2 (RASAL2) NP_033192 Sorbs1 Sorbin and SH3 domain containing 1 AI842600 EST NM_009122 SATB1, Special AT-rich sequence binding protein 1 AI842665 EST, possibly Tax interaction protein 1 (TIP-1) AI839175 Sdpr, Serum deprivation response AI843466 EST, possibly stress-associated endoplasmic reticulum protein 1; associated membrane protein 4 (SERP1) AAF87259 Seb4l Seb4-like (Xenopus laevis AI843655 EST

Medulloblastoma array analyses, mouse U74Av2 gene list 5 Lee, Y et al., St. Jude Children’s Research Hospital AI841497 Set, SET translocation AI843880 EST AA656775 Rrr-pending, Regulator for ribosome resistance homolog (S. cerevisiae AI845664 EST AA684508 Rnu22 RNA, U22 small nucleolar AI845988 EST, possibly non-kinase Cdc42 effector protein SPEC2 (LOC56990) AV363418 Ris2, retroviral integration site 1 AI846118 EST AI838337 Ptov1, Prostate tumor over expressed gene 1 AI846302 EST, possibly CPSF4 (cleavage and polyadenylation specific factor 4, 30kD subunit) X97490 Ppp1r14b, 1, regulatory (inhibotor) subunit 14B, PNG AI846595 EST, possibly splicing factor, arginine/serine-rich 6 (SFRS6) NM_019755 Plp2, proteolipid protein 2 AI846811 EST D73368 Mer protein, Erh Enhancer of rudimentary homolog (Drosophila) AI848235 EST AF035939 Magoh, Magoh Mago-nashi homolog, proliferation-associated (Drosophila) AI848299 EST, possibly replication protein A3 (14 kD) (RPA3) U90123 Hn1, hematological and neurological expressed sequence 1 AI848382 EST, possibly ubiquitin specific protease 1 (USP1) U83176 Gt(ROSA)26asSor, Gene trap ROSA 26 antisense, Philippe Soriano AI848671 EST U42385 FIN16, fibroblast growth factor inducible gene 16 AI848723 EST AI047076 Fignl1, Fidgetin-like 1, ATP-binding protein AI850195 EST, possibly RNA processing factor 1 (RPF1) AI839681 Epcs3, Ectoplacental cone, invasive trophoblast giant cells, extraembryonic ectoderm and chorion sequence 3 AI850569 EST, possibly pyrroline 5-carboxylate reductase isoform (P5CR2), AAK74154 ELAV-like neuronal protein-1 AI850675 EST AW046124 Cyba, cytochrome b-245, alpha polypeptide AI851230 EST AI853113 Cpsf5, Cleavage and polyadenylation specific factor 5, 25 kD subunit AI851599 EST, possibly H1 histone family, member X (H1FX) D88792 Csrp2, Cysteine-rich protein 2, DLP-1 AI852022 EST AW125626 Cnn3, Calponin 3, acidic AI852661 EST NP_079538 C6orf20, Chromosome 6 open 20 AI852864 EST AW125534 Brd7, Bromodomain-containing 7 AI853019 EST AI851985 Basp1, Brain abundant, membrane attached signal protein 1 AI853634 EST AI841645 Ard1, N-acetyltransferase ARD1 homolog (S. cerevisiae) AI853789 EST, possibly MIL1 protein (MIL1), AB021289 Npc2, Niemann Pick type C2 AI854238 EST, possibly Highly similar to A48045 ribosomal protein S27, cytosolic [H.sapiens] AI844011 Paf67, Polymerase-associated factor 67kda AI854262 EST, possibly , alpha (RARA) AA007891 EST AK005280 EST AA032310 EST AV160069 EST AA216808 EST, possibly crooked neck-like 1 (CRNKL1) AV294412 EST AA275196 EST AW045664 EST AA590345 EST AW045910 EST AA597246 EST AW046194 EST AA612450 EST, possibly capillary morphogenesis protein 2 (CMG2) AW046220 EST AA667128 EST AW046323 EST, possibly HIV-1 rev binding protein 2 (HRB2) AA674812 EST, possibly peter pan homology (PPAN) AW046672 EST AA681998 EST, possibly CDC28 protein kinase 2 (CKS2) AW046771 EST AA683712 EST AW046963 EST, possibly U6 snRNA-associated Sm-like protein LSm8 (LOC51691) AA795062 EST, possibly Lsm3 protein (LSM3) AW047116 EST AA833425 EST AW047399 EST AA856349 EST AW048132 EST AA867497 EST AW049359 EST AA881621 EST, possibly 38 kDa splicing factor AW060951 EST AA914105 EST, possibly pro-oncosis receptor inducing membrane injury gene (PORIMIN) AW121031 EST, possibly nucleolar protein family A, member 2 (H/ACA small nucleolar RNPs) (NOLA2) AA915720 EST, possibly U6 snRNA-associated Sm-like protein (LSM5) AW121447 EST

Medulloblastoma array analyses, mouse U74Av2 gene list 6 Lee, Y et al., St. Jude Children’s Research Hospital AA940430 EST AW121710 EST AA959180 EST AW121947 EST AA981268 EST, possibly nebulin (NEB) AW122030 EST AA982595 EST AW122092 EST, possibly replication factor C (activator 1) 4 (37 KD) (RFC4) AA986856 EST AW122271 EST AF110520 EST AW122331 EST AI020542 EST AW122948 EST AI043090 EST AW123707 EST AI049398 EST AW123781 EST AI122538 EST AW124627 EST AI131895 EST AW124778 EST AI152789 EST AW124859 EST AI173038 EST, possibly CHAF1B (chromatin assembly factor 1, subunit B, p60) AW125218 EST, possibly histone acetyltransferase 1 (HAT1) AI194274 EST AW211667 EST AI197337 EST AW212532 EST AI226158 EST, possibly nuclear pore complex protein (NUP 107) AW213883 EST, possibly HCAP-H AI272489 EST, possibly DNA replication helicase 2-like (DNA2L) AW214587 EST, possibly lamin B receptor (LBR) AI415065 EST AW214617 EST AI510131 EST AW259499 EST AI593759 EST AW259499 EST AI595322 EST, possibly highly expressed in cancer, rich in leucine heptad repeats (HEC) C77566 EST AI606257 EST CAB78388 EST AI647003 EST CAB89673 EST AI648005 EST NM_023203 EST AI785289 EST XP_129402 EST, possibly nucleolar protein interacting with the FHA domain of pKi-67 (NIFK) AI835858 EST, possibly moderately similar to TROPOMYOSIN 5, CYTOSKELETAL TYPE XP_132496 EST

Medulloblastoma array analyses, mouse U74Av2 gene list 7 Lee, Y et al., St. Jude Children’s Research Hospital

Down-regulated in medulloblastoma accession # Development AF006467 Mpt1, membrane-associated phosphatidylinositol transfer protein (mpt1), X59382 Parvalbumin (small transcript M31811 Mag, Myelin-associated glycoprotein X78667 Ryr2, Ryanodine receptor 2, cardiac, (BALB/c) Ryr2 D78265 Pancortin-4, Olfm1 Olfactomedin 1 AI848518 Zfp385, Zinc finger protein 385

accession # Cell cycle/maintenance AF033350 Sept5, Septin 5, CDCREL-1 homolog (Cdcrel-1) AB033922 Ndr3, N-myc downstream regulated 3, Ndr1 related protein Ndr3 AJ010108 Ak1, Adenylate kinase 1, cytosolic adenylate kinase

accession # Apoptosis AF011908 Aatk, Apoptosis-associated tyrosine kinase , apoptosis associated tyrosine kinase (AATYK)

accession # Signal transduction AB020239 Ak4, Adenylate kinase 4 X58287 Ptprm, Protein tyrosine phosphatase, receptor-type, M , mR-PTPu for protein tyrosine phosphatase U76758 Ank1, Ankyrin 1 D21165 Vsnl1, Visinin-like 1, Neural visinin-like Ca2+-binding protein type 1 (NVP-1) U05245 Tiam1, T-cell lymphoma invasion and metastasis 1 X85124 Pacsin, Pacsin1 Protein kinase C and casein kinase substrate in neurons 1 AB018194 BIT, Ptpns1 Protein tyrosine phosphatase, non-receptor type substrate 1 M21532 PCD-5, Pcp2 Purkinje cell protein 2 (L7) NM_009788 Calbindin-28K D86176 Pip5k1a, Phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha X73985 Calb2, Calbindin 2, calretinin AW125016 Prkar1b, Protein kinase, cAMP dependent regulatory, type I beta X63615 Camk-2, Ca2+/calmodulin dependent protein kinase II beta subunit M94632 Prkcz, protein kinase C, zeta X61448 Cbln1, Cerebellin 1 precursor L28035 Prkcg, protein kinase C, gamma L21671 Eps8, epidermal growth factor receptor pathway substrate 8 L02241 Pkib, Protein kinase inhibitor beta M30641 FGFA, acidic fibroblast growth factor, Fgf1 Fibroblast growth factor 1 D50621 PSD-95/SAP90A, Dlgh4 Discs, large homolog 4 (Drosophila X59398 Flt3, tyrosine kinase receptor of the PDGF, FMS-like tyrosine kinase 3 D31898 Ptprr, protein tyrosine phosphatase, receptor type, R U38501 Gnai1, Guanine nucleotide binding protein, alpha inhibiting 1, G protein alpha i1 subunit AI853638 Rap1ga1, Rap1, GTPase-activating protein 1 AB016602 Gpr37l1 G protein-coupled receptor 37-like 1, G-protein coupled receptor AJ250489 Ramp1, receptor activity modifying protein 1 AF071562 Gsbs-pending, G substrate, substrate of cyclic GMP-dependent protein kinase AB000828 TYRO3, protein tyrosine kinase 3 AF093261 Homer3-pending, Homer, neuronal immediate early gene AF011360 RGS7, regulator of G-protein signaling M21530 Itpr1, Inositol 1,4,5-triphosphate receptor 1 U71202 Rin, RAS-like protein AB023027 mCaMK1-beta2, Pnck Pregnancy upregulated non-ubiquitously expressed CaM kinase AV336781 Scn1a, sodium channel, voltage-gated, type I, alpha polypeptide Y13439 MAPK12, mitogen-activated protein kinase 12, stress activated protein kinase-3

accession # DNA/RNA processing AV345565 Adarb1, Adenosine deaminase, RNA-specific, B1 X92352 Nap1l2, Nucleosome assembly protein 1-like 2 AI839697 H1f2, H1 histone family, member 2

Medulloblastoma array analyses, mouse U74Av2 gene list 8 Lee, Y et al., St. Jude Children’s Research Hospital

accession # Gene expression L10426 ER81, Ets-related protein 81, Etv1, Ets variant gene 1 AA762325 Nkx6-2, NK6 transcription factor related, locus 2 (Drosophila AJ001972 Id4,, Idb4 Inhibitor of DNA binding 4, DNA binding U53228 Nuclear hormone receptor ROR-alpha isoform 1 U47543 Nab2, Ngfi-A binding protein 2 U02098 Pur-alpha, Pura Purine rich element binding protein A

accession # Protein processing and expression M28489 Rps6ka1, Ribosomal protein S6 kinase polypeptide 1, rsk AJ001700 Serpini1, Serine (or cysteine) proteinase inhibitor, Neuroserpin L26479 Eef1a2, Eukaryotic translation elongation factor 1 alpha 2, Elongation factor-1 alpha (MS1)

accession # Metabolism CAA17432 ALDH8A1, Aldehyde dehyrdogenase 8 family, member A1, Aldehyde dehydrogenase II Z13969 Ckmt1, Creatine kinase, mitochondrial 1, mitochondrial creatine kinase U37091 Carbonic anhydrase IV AA590675 Ndufs4, NADH dehydrogenase (ubiquinone) Fe-S protein 4 AAA35653 CA8, Carbonic anhydrase VIII AI852672 Pfkm, Phosphofructokinase J05154 Lcat, Lecithin cholesterol acyltransferase, cholesterol acyltransferase (LCAT) AI850363 Pygm, muscle glycogen phosphorylase X83202 Hsd11b1, Hydroxysteroid 11-beta dehydrogenase 1

accession # Cytoskeleton/tubules Y19186 Aczonin, short spliced variant (acz gene), Pclo Piccolo D29951 Kif1a, Kinesin heavy chain member 1A M13444 Alpha-tubulin isotype M-alpha-6 M35131 Nfh, neurofilament heavy polypeptide U51204 APC-binding protein EB2 M55424 Nfl, neurofilament light polypeptide M28730 Beta-tubulin gene M-beta-4 M18775 Mapt, Microtubule-associated protein Y15197 Mtap7, Microtubule-associated protein 7, E-MAP-115 protein

accession # Channel/transport D38614 Cplx1, Complexin 1, 921-S for presynaptic protein AAL85094 Nsf, N-ethylmaleimide sensitive fusion protein X16645 Atp1b2, ATPase, Na+/K+ transporting, beta 2 polypeptide , AMOG (AA 1-290 NP_065598 Osbpl1a, Oxysterol binding protein-like 1A AV348528 Atp1b1, ATPase, Na+/K+ transporting, beta 1 polypeptide X15373 Itpr1, Inositol 1,4,5-triphosphate receptor 1, P400 protein X75927 Abca2, ATP-binding cassette, sub-family A (ABC1), member 2 AF091390 Fxyd1, FXYD domain-containing ion transport regulator 1, phospholemman M63801 Gja1, Gap junction membrane channel protein alpha 1, Connexin 43 M90365 Plakoglobin AI846739 Cox7a2l, cytochrome c oxidase subunit VIIa polypeptide 2-like U28960 Pltp, Phospholipid transfer protein Z79787 Dtna, Dystrobrevin AF107780 Kcnd2, Potassium voltage-gated channel, Shal-related family, member 2, Potassium channel Kv4.2 X14961 Fabp3, Fatty acid binding protein 3, muscle and heart Y00305 Kcna1, Potassium voltage-gated channel, shaker-related subfamily, member 1 M92378 Gabt1 Gamma-aminobutyric acid (GABA-A) transporter 1 AF029982 Serca2, Atp2a2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 X61430 Gabra1, Gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 1 D83262 Slc1a6, solute carrier family 1, member 6 AF256198 Gabra6 ,Gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 6 AW121154 Slc3a1, solute carrier family 3, member 1 D13266 Grid2, Glutamate receptor, ionotropic, delta 2 L42339 Scn1a, sodium channel, voltage-gated, type I, alpha polypeptide, sodium channel 3 X57497 Gria1, Glutamate receptor, ionotropic, AMPA1 (alpha 1) CAB62974 Syn3, Synapsin III

Medulloblastoma array analyses, mouse U74Av2 gene list 9 Lee, Y et al., St. Jude Children’s Research Hospital AI847120 Grin1, Glutamate receptor, ionotropic, NMDA1 (zeta 1) X95818 Synaptophysin D10694 Grin2c, Glutamate receptor, ionotropic, NMDA2C (epsilon 3) M22012 Snap25, Synaptosomal-associated protein, 25 kDa. U65592 Kcnab2, Potassium voltage-gated channel, shaker-related subfamily, beta member 2, NP_033334 Syt4, Synaptotagmin 4 AAL07248 Kcnma1, Potassium large conductance calcium-activated channel, subfamily M, alpha member 1 M12379 Thy1, Thymus cell antigen 1 Y07812 Mal, Myelin and lymphocyte protein. U60150 VAMP-2, vesicle-associated membrane protein vamp-2 U73625 Mtrp1, alpha (Mtrp1), Trrp1, Transient receptor protein 1 AJ001598 Viaat, Vesicular inhibitory amino acid transporter, vesicular GABA and glycine transporter U62021 NPTX1, Neuronal pentraxin 1 ( L48687 Scn1b, Sodium channel, voltage-gated, type I, beta polypeptide

accession # Immune response/defense AV363696 Ii, Ia-associated invariant chain AB006361 Ptgds, Prostaglandin D2 synthase (21 kDa, brain) AF175292 IL-16 AF071549 Scyd1, small inducible cytokine subfamily D 1, fractalkine

accession # Etc X59520 CCK, cholecystokinin M16472 Plp, Proteolipid protein (myelin), Proteolipid protein variant DM-20 CAA37199 Chromogranin B (secretogranin I) M55181 Penk1, Preproenkephalin 1, spermatogenic-specific proenkephalin AI836349 Jph3, Junctophilin 3 X92864 Spock1, Sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1, testican AI834776 Mobp, Myelin-associated oligodendrocytic basic protein X95518 Nttp1 Neuronal tyrosine/threonine phosphatase 1

accession # Unknown AF037312 SUR-1, Sulfonylurea receptor-1 AI844269 EST, possibly microtubule-associated protein, RP/EB family, member 2 (MAPRE2) X95279 Thrsp, Thyroid hormone responsive SPOT14 homolog (Rattus) AI846678 EST AW048113 Snrk, SNF related kinase AI847069 EST AI838513 Ppfia4, Protein tyrosine phosphatase, receptor type, f polypeptide, interacting protein (liprin), alpha 4 AI847230 EST D26483 Tm4sf2, Transmembrane 4 superfamily member 2, PE31/TALLA AI850079 EST, possibly phosphatidylinositol (4,5) bisphosphate 5-phosphatase, A (PIB5PA) X17320 Pcp4, Purkinje cell protein 4, Pep-19 AI852087 EST, possibly SEC14-like 1 (S. cerevisiae) (SEC14L1) AB031291 Tagln3, Transgelin 3, NP25 AI852838 EST AW124144 Evt2, evectin-2 AI853332 EST, possibly growth differentiation factor 10 (GDF10) XP_127141 GT12 AI853573 ESTs, Highly similar to HUNTINGTIN-ASSOCIATED PROTEIN-INTERACTING PROTEIN AW046460 Fnbp1, Formin binding protein 1 AI854265 EST AI843164 Dnajb10, DnaJ (Hsp40) homolog, subfamily B, member 10 AV091649 EST, possibly microtubule-associated protein, RP/EB family, member 3 AI850356 Dp1, Deleted in polyposis 1 AV305843 EST U93309 Dlgh1, homolog (dlg1 AW048549 EST, possibly glutamate receptor, ionotropic, AMPA 1 (GRIA1) AW047343 Dbp, D site albumin promoter binding protein AW120767 EST X61450 Brp14, Brain protein 14 AW121364 EST AB013097 Zfp179 Zinc finger protein 179, AW122114 EST AAF44934 BG:DS07851.3 Drosophila melanogaster (BG:DS07851.3) AW122372 EST AW125480 Als2, amyotrophic lateral sclerosis 2 (juvenile) homolog (human) AW122563 EST AA163268 EST AW122596 EST AA683785 EST AW122995 EST AA690483 EST AW123564 EST

Medulloblastoma array analyses, mouse U74Av2 gene list 10 Lee, Y et al., St. Jude Children’s Research Hospital AI118078 EST AW123662 EST, possibly secretory carrier membrane protein 1 (SCAMP1) AI503362 EST AW124185 EST AI595313 EST AW124196 EST AI835760 EST AW124433 EST AI837497 EST, possibly DAB2 interacting protein (DAB2IP) AW125299 EST AI837921 EST, Similar to hydroxyacyl glutathione hydrolase AW125453 EST AI839662 EST AW215585 EST AI839839 EST BB246828 EST AI841606 EST CAC05310 EST AI842002 EST NP_039033 EST, possibly ubiquitin-like 1 (sentrin) (UBL1) AI842668 EST XP_132315 EST, possibly paxillin (PXN), cell adhesion, cell motility, focal adhesion, signal transduction, AI843884 EST XP_149128 EST

Medulloblastoma array analyses, mouse U74Av2 gene list 11 Lee, Y et al., St. Jude Children’s Research Hospital