Phylogeny and Species Delimitation
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A Survey of Fungi at the University of Wisconsin-Waukesha Field Station
University of Wisconsin Milwaukee UWM Digital Commons Field Station Bulletins UWM Field Station Spring 1993 A survey of fungi at the University of Wisconsin- Waukesha Field Station Alan D. Parker University of Wisconsin-Waukesha Follow this and additional works at: https://dc.uwm.edu/fieldstation_bulletins Part of the Forest Biology Commons, and the Zoology Commons Recommended Citation Parker, A.D. 1993 A survey of fungi at the University of Wisconsin-Waukesha Field Station. Field Station Bulletin 26(1): 1-10. This Article is brought to you for free and open access by UWM Digital Commons. It has been accepted for inclusion in Field Station Bulletins by an authorized administrator of UWM Digital Commons. For more information, please contact [email protected]. A Survey of Fungi at the University of Wisconsin-Waukesha Field Station Alan D. Parker Department of Biological Sciences University of Wisconsin-Waukesha Waukesha, Wisconsin 53188 Introduction The University of Wisconsin-Waukesha Field Station was founded in 1967 through the generous gift of a 98 acre farm by Ms. Gertrude Sherman. The facility is located approximately nine miles west of Waukesha on Highway 18, just south of the Waterville Road intersection. The site consists of rolling glacial deposits covered with old field vegetation, 20 acres of xeric oak woods, a small lake with marshlands and bog, and a cold water stream. Other communities are being estab- lished as a result of restoration work; among these are mesic prairie, oak opening, and stands of various conifers. A long-term study of higher fungi and Myxomycetes, primarily from the xeric oak woods, was started in 1978. -
Chorioactidaceae: a New Family in the Pezizales (Ascomycota) with Four Genera
mycological research 112 (2008) 513–527 journal homepage: www.elsevier.com/locate/mycres Chorioactidaceae: a new family in the Pezizales (Ascomycota) with four genera Donald H. PFISTER*, Caroline SLATER, Karen HANSENy Harvard University Herbaria – Farlow Herbarium of Cryptogamic Botany, Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Avenue, Cambridge, MA 02138, USA article info abstract Article history: Molecular phylogenetic and comparative morphological studies provide evidence for the Received 15 June 2007 recognition of a new family, Chorioactidaceae, in the Pezizales. Four genera are placed in Received in revised form the family: Chorioactis, Desmazierella, Neournula, and Wolfina. Based on parsimony, like- 1 November 2007 lihood, and Bayesian analyses of LSU, SSU, and RPB2 sequence data, Chorioactidaceae repre- Accepted 29 November 2007 sents a sister clade to the Sarcosomataceae, to which some of these taxa were previously Corresponding Editor: referred. Morphologically these genera are similar in pigmentation, excipular construction, H. Thorsten Lumbsch and asci, which mostly have terminal opercula and rounded, sometimes forked, bases without croziers. Ascospores have cyanophilic walls or cyanophilic surface ornamentation Keywords: in the form of ridges or warts. So far as is known the ascospores and the cells of the LSU paraphyses of all species are multinucleate. The six species recognized in these four genera RPB2 all have limited geographical distributions in the northern hemisphere. Sarcoscyphaceae ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Sarcosomataceae SSU Introduction indicated a relationship of these taxa to the Sarcosomataceae and discussed the group as the Chorioactis clade. Only six spe- The Pezizales, operculate cup-fungi, have been put on rela- cies are assigned to these genera, most of which are infre- tively stable phylogenetic footing as summarized by Hansen quently collected. -
Appendix K. Survey and Manage Species Persistence Evaluation
Appendix K. Survey and Manage Species Persistence Evaluation Establishment of the 95-foot wide construction corridor and TEWAs would likely remove individuals of H. caeruleus and modify microclimate conditions around individuals that are not removed. The removal of forests and host trees and disturbance to soil could negatively affect H. caeruleus in adjacent areas by removing its habitat, disturbing the roots of host trees, and affecting its mycorrhizal association with the trees, potentially affecting site persistence. Restored portions of the corridor and TEWAs would be dominated by early seral vegetation for approximately 30 years, which would result in long-term changes to habitat conditions. A 30-foot wide portion of the corridor would be maintained in low-growing vegetation for pipeline maintenance and would not provide habitat for the species during the life of the project. Hygrophorus caeruleus is not likely to persist at one of the sites in the project area because of the extent of impacts and the proximity of the recorded observation to the corridor. Hygrophorus caeruleus is likely to persist at the remaining three sites in the project area (MP 168.8 and MP 172.4 (north), and MP 172.5-172.7) because the majority of observations within the sites are more than 90 feet from the corridor, where direct effects are not anticipated and indirect effects are unlikely. The site at MP 168.8 is in a forested area on an east-facing slope, and a paved road occurs through the southeast part of the site. Four out of five observations are more than 90 feet southwest of the corridor and are not likely to be directly or indirectly affected by the PCGP Project based on the distance from the corridor, extent of forests surrounding the observations, and proximity to an existing open corridor (the road), indicating the species is likely resilient to edge- related effects at the site. -
Peziza and Pezizaceae Inferred from Multiple Nuclear Genes: RPB2, -Tubulin, and LSU Rdna
Molecular Phylogenetics and Evolution 36 (2005) 1–23 www.elsevier.com/locate/ympev Evolutionary relationships of the cup-fungus genus Peziza and Pezizaceae inferred from multiple nuclear genes: RPB2, -tubulin, and LSU rDNA Karen Hansen ¤, Katherine F. LoBuglio, Donald H. PWster Harvard University Herbaria, Cambridge, MA 02138, USA Received 5 May 2004; revised 17 December 2004 Available online 22 April 2005 Abstract To provide a robust phylogeny of Pezizaceae, partial sequences from two nuclear protein-coding genes, RPB2 (encoding the sec- ond largest subunit of RNA polymerase II) and -tubulin, were obtained from 69 and 72 specimens, respectively, to analyze with nuclear ribosomal large subunit RNA gene sequences (LSU). The three-gene data set includes 32 species of Peziza, and 27 species from nine additional epigeous and six hypogeous (truZe) pezizaceous genera. Analyses of the combined LSU, RPB2, and -tubulin data set using parsimony, maximum likelihood, and Bayesian approaches identify 14 Wne-scale lineages within Pezizaceae. Species of Peziza occur in eight of the lineages, spread among other genera of the family, conWrming the non-monophyly of the genus. Although parsimony analyses of the three-gene data set produced a nearly completely resolved strict consensus tree, with increased conWdence, relationships between the lineages are still resolved with mostly weak bootstrap support. Bayesian analyses of the three- gene data, however, show support for several more inclusive clades, mostly congruent with Bayesian analyses of RPB2. No strongly supported incongruence was found among phylogenies derived from the separate LSU, RPB2, and -tubulin data sets. The RPB2 region appeared to be the most informative single gene region based on resolution and clade support, and accounts for the greatest number of potentially parsimony informative characters within the combined data set, followed by the LSU and the -tubulin region. -
Dreams and Nightmares of Latin American Ascomycete Taxonomists
DREAMS AND NIGHTMARES OF NEOTROPICAL ASCOMYCETE TAXONOMISTS Richard P. Korf Emeritus Professor of Mycology at Cornell University & Emeritus Curator of the Cornell Plant Pathology Herbarium, Ithaca, New York A talk presented at the VII Congress of Latin American Mycology, San José, Costa Rica, July 20, 2011 ABSTRACT Is taxonomic inquiry outdated, or cutting edge? A reassessment is made of the goals, successes, and failures of taxonomists who study the fungi of the Neotropics, with a view toward what we should do in the future if we are to have maximum scientific and societal impact. Ten questions are posed, including: Do we really need names? Who is likely to be funding our future research? Is the collapse of the Ivory Tower of Academia a dream or a nightmare? I have been invited here to present a talk on my views on what taxonomists working on Ascomycetes in the Neotropics should be doing. Why me? Perhaps just because I am one of the oldest ascomycete taxonomists, who just might have some shreds of wisdom to impart. I take the challenge seriously, and somewhat to my surprise I have come to some conclusions that shock me, as well they may shock you. OUR HISTORY Let's take a brief view of the time frame I want to talk about. It's really not that old. Most of us think of Elias Magnus Fries as the "father of mycology," a starting point for fungal names as the sanctioning author for most of the fungi. In 1825 Fries was halfway through his Systema Mycologicum, describing and illustrating fungi on what he could see without the aid of a microscope. -
A Four-Locus Phylogeny of Rib-Stiped Cupulate Species Of
A peer-reviewed open-access journal MycoKeys 60: 45–67 (2019) A four-locus phylogeny of of Helvella 45 doi: 10.3897/mycokeys.60.38186 RESEARCH ARTICLE MycoKeys http://mycokeys.pensoft.net Launched to accelerate biodiversity research A four-locus phylogeny of rib-stiped cupulate species of Helvella (Helvellaceae, Pezizales) with discovery of three new species Xin-Cun Wang1, Tie-Zhi Liu2, Shuang-Lin Chen3, Yi Li4, Wen-Ying Zhuang1 1 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China 2 College of Life Sciences, Chifeng University, Chifeng, Inner Mongolia 024000, China 3 College of Life Sciences, Nanjing Normal University, Nanjing, Jiangsu 210023, China 4 College of Food Science and Engineering, Yangzhou University, Yangzhou, Jiangsu 225127, China Corresponding author: Wen-Ying Zhuang ([email protected]) Academic editor: T. Lumbsch | Received 11 July 2019 | Accepted 18 September 2019 | Published 31 October 2019 Citation: Wang X-C, Liu T-Z, Chen S-L, Li Y, Zhuang W-Y (2019) A four-locus phylogeny of rib-stiped cupulate species of Helvella (Helvellaceae, Pezizales) with discovery of three new species. MycoKeys 60: 45–67. https://doi. org/10.3897/mycokeys.60.38186 Abstract Helvella species are ascomycetous macrofungi with saddle-shaped or cupulate apothecia. They are distri- buted worldwide and play an important ecological role as ectomycorrhizal symbionts. A recent multi-locus phylogenetic study of the genus suggested that the cupulate group of Helvella was in need of comprehen- sive revision. In this study, all the specimens of cupulate Helvella sensu lato with ribbed stipes deposited in HMAS were examined morphologically and molecularly. -
A Synopsis of the Saddle Fungi (Helvella: Ascomycota) in Europe – Species Delimitation, Taxonomy and Typification
Persoonia 39, 2017: 201–253 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2017.39.09 A synopsis of the saddle fungi (Helvella: Ascomycota) in Europe – species delimitation, taxonomy and typification I. Skrede1,*, T. Carlsen1, T. Schumacher1 Key words Abstract Helvella is a widespread, speciose genus of large apothecial ascomycetes (Pezizomycete: Pezizales) that are found in terrestrial biomes of the Northern and Southern Hemispheres. This study represents a beginning on molecular phylogeny assessing species limits and applying correct names for Helvella species based on type material and specimens in the Pezizales university herbaria (fungaria) of Copenhagen (C), Harvard (FH) and Oslo (O). We use morphology and phylogenetic systematics evidence from four loci – heat shock protein 90 (hsp), translation elongation factor alpha (tef), RNA polymerase II (rpb2) and the nuclear large subunit ribosomal DNA (LSU) – to assess species boundaries in an expanded sample of Helvella specimens from Europe. We combine the morphological and phylogenetic information from 55 Helvella species from Europe with a small sample of Helvella species from other regions of the world. Little intraspecific variation was detected within the species using these molecular markers; hsp and rpb2 markers provided useful barcodes for species delimitation in this genus, while LSU provided more variable resolution among the pertinent species. We discuss typification issues and identify molecular characteristics for 55 European Helvella species, designate neo- and epitypes for 30 species, and describe seven Helvella species new to science, i.e., H. alpicola, H. alpina, H. carnosa, H. danica, H. nannfeldtii, H. pubescens and H. -
Introduction Materials and Methods Results
Journal of Applied Biological Sciences 6 (3): 31-33, 2012 ISSN: 1307-1130, E-ISSN: 2146-0108, www.nobel.gen.tr Two New Helvella Records For Turkish Mycobiota Ilgaz AKATA1 Abdullah KAYA2* 1Ankara University, Science Faculty, Department of Biology, Ankara, TURKEY 2Karamanoglu Mehmetbey University, Kamil Özdag Science Faculty, Department of Biology, Karaman, TURKEY *Corresponding Author Received: April 10, 2012 e-mail:[email protected] Accepted: May 15, 2012 Abstract Two Helvella species, Helvella macropus (Pers.) P. Karst and H. pezizoides Afzel. are given as new records for Turkey. Short descriptions and photographs related to macro and micromorphologies of the species are provided and discussed briefly. Keywords: Helvella, biodiversity, macrofungi, new records, Turkey INTRODUCTION MATERIALS AND METHODS Helvella, commonly known as elfin saddles or false morels, Macrofungi samples were collected from Yomra district is a genus of the family Helvellaceae (Ascomycota) [1]. The of Trabzon province (Turkey) in 2011. During field study, members of the genus, are characterized by sub sessile or necessary morphological and ecological features of the stipitate fruiting body, cup to saddle shaped apothecia, smooth, specimens were recorded and they were photographed in wavy or wrinkled hymenium, 1-2 mm thick flesh, operculate to their natural habitats. Then the samples were taken to the nonamyloid asci, and cylindrical and tapering or grooved and laboratory for further investigation. Some reagents (distilled ribbed stem, ellipsoid to fusoid, hyaline, smooth to verrucose water, Melzer’s reagent, 5% KOH) were used for microscopic spores with one large central oil droplet [2]. investigation. Microphotographs were taken under a Leica DM The genus, which was erected by Linnaeus in 1753 to 1000 light microscope. -
THE LARGER CUP FUNGI in BRITAIN - Part 2 Pezizaceae (Excluding Peziza & Plicaria) Brian Spooner Herbarium, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE
Field Mycology Volume 2(1), January 2001 THE LARGER CUP FUNGI IN BRITAIN - part 2 Pezizaceae (excluding Peziza & Plicaria) Brian Spooner Herbarium, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE he first part of this series (Spooner, 2000) provided a brief introduction to cup fungi or ‘discomycetes’, and considered in particular the ‘operculate’ species, those in T which the ascus opens (dehisces) via an apical lid or operculum.These constitute the order Pezizales and include most of the larger discomycete species. A key to the 12 families of Pezizales represented in Britain was given. In the present part, a key to the British genera of the Pezizaceae is provided, together with brief descriptions of the genera and keys to the species of all genera other than Peziza and Plicaria.These two genera, which include over sixty species in Britain alone, will be considered in Part 3. A glossary of technical terms is given at the end of the article. Pezizaceae Dumort. Characterised by operculate, thin-walled, amyloid asci and uninucleate spores with thin or rarely somewhat thickened walls. Key to British Genera of Pezizaceae 1. Asci indehiscent; ascomata subhypogeous or developed in litter, subglobose or irregular in form; spores globose, ornamented, purple-brown at maturity, eguttulate . Sphaerozone 1. Asci dehiscent; ascomata epigeous, rarely hypogeous at first, on various substrates, cupulate to discoid or pulvinate, sometimes short-stipitate, rarely sparassoid; spores globose or ellip- soid, smooth or ornamented, hyaline or brownish, guttulate or eguttulate . 2 2. Ascus apex strongly blue in iodine, rest of wall diffusely blue in iodine or not . -
Micolucus 5 2018
MICOLUCUS • SOCIEDADE MICOLÓXICA LUCUS NÚMERO 5 • ANO 2018 NÚME R O 5•ANO2018 Limiar .............................................................................................. 1 é unha publicación da Sociedade Micolóxica Lucus, Biodiversidade fúnxica da Reserva da Biosfera Terras do Miño: CIF: G27272954 Lentinellus tridentinus. Depósito Legal: LU 140-2014 JOSE CASTRO................................................................................... 2 ISSN edición impresa: 2386-8872 ISSN edición dixital: 2387-1822 Aportaciones al conocimiento de la micobiota de la Sierra de O Courel (Lugo, España): REDACCIÓN E COORDINACIÓN: Donadinia helvelloides JULIÁN ALONSO DÍAZ...................................................................... 9 Julián Alonso Díaz Jose Castro Ferreiro Descripción de cuatro especies interesantes para la Benito Martínez Lobato micoflora de Galicia. Juan Antonio Martínez Fidalgo JOSÉ MANUEL CASTRO MARCOTE, JOSÉ MARÍA COSTA LAGO ..... 19 Alfonso Vázquez Fraga José Manuel Fernández Díaz Hongos hipogeos de la provincia de Lugo: Tuber foetidum. Cristina Gayo Cancelas JOSE CASTRO, JULIÁN ALONSO, ALFONSO VÁZQUEZ ................... 31 Jesús Javier Varela Quintas Howard Fox Fomitopsis iberica, un políporo agente de pudrición marrón. • Os artigos remitidos a SANTIAGO CORRAL ESTÉVEZ, JOSÉ MARÍA COSTA LAGO ............. 38 son revisados por asesores externos antes de ser Estudos sobre a micobiota folícola da Reserva da Biosfera aceptados ou rexeitados. Terras do Miño I: Chloroscypha chloromela. JOSE CASTRO ............................................................................... -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
(With (Otidiaceae). Annellospores, The
PERSOONIA Published by the Rijksherbarium, Leiden Volume Part 6, 4, pp. 405-414 (1972) Imperfect states and the taxonomy of the Pezizales J.W. Paden Department of Biology, University of Victoria Victoria, B. C., Canada (With Plates 20-22) Certainly only a relatively few species of the Pezizales have been studied in culture. I that this will efforts in this direction. hope paper stimulatemore A few patterns are emerging from those species that have been cultured and have produced conidia but more information is needed. Botryoblasto- and found in cultures of spores ( Oedocephalum Ostracoderma) are frequently Peziza and Iodophanus (Pezizaceae). Aleurospores are known in Peziza but also in other like known in genera. Botrytis- imperfect states are Trichophaea (Otidiaceae). Sympodulosporous imperfect states are known in several families (Sarcoscyphaceae, Sarcosomataceae, Aleuriaceae, Morchellaceae) embracing both suborders. Conoplea is definitely tied in with Urnula and Plectania, Nodulosporium with Geopyxis, and Costantinella with Morchella. Certain types of conidia are not presently known in the Pezizales. Phialo- and few other have spores, porospores, annellospores, blastospores a types not been reported. The absence of phialospores is of special interest since these are common in the Helotiales. The absence of conidia in certain e. Helvellaceae and Theleboleaceae also be of groups, g. may significance, and would aid in delimiting these taxa. At the species level critical com- of taxonomic and parison imperfect states may help clarify problems supplement other data in distinguishing between closely related species. Plectania and of where such Peziza, perhaps Sarcoscypha are examples genera studies valuable. might prove One of the Pezizales in need of in culture large group desparate study are the few of these have been cultured.