The Ti-Plasmid and Plant Molecular Biology
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Co-Integrated Vectors
Co-integrated Vectors • This vectors were among the first types of modified and engineered Ti plasmids devised for Agrobacterium - mediated transformation, but are not widely used today. • These vectors are constructed by homologous recombination of a bacterial plasmid with the T-DNA region of an endogenous Ti plasmid in Agrobacterium. Integration of the two plasmids requires a region of homology present in both. • Three vectors are necessary in this system: • Disarmed Agrobacterium Ti plasmids In these Ti plasmids, the oncogenes located in the T-DNA region have been replaced by exogenous DNA. Examples of these vectors include: – pGV series: the phytohormone genes are excised and substituted by part of pBR322 vector sequence. The left and right border sequences as well as the nopaline synthase gene of the Ti plasmid are conserved. • Intermediate vectors These are small pBR322-based plasmids (E. coli vectors) containing a T-DNA region. They are used to overcome the problems derived from the large size of disarmed Ti plasmids and their lack of unique restriction sites. Intermediate vectors are replicated in E.coli and are transferred into Agrobacterium by conjugation. They cannot replicate in A. tumefaciens and therefore, carry DNA segments homologous to the disarmed T-DNA to permit recombination to form a co-integrated T-DNA structure. • Helper vectors These are small plasmids maintained in E. coli that contain transfer (tra) and mobilization (mob) genes, which allow the transfer of the conjugation-deficient intermediate vectors into Agrobacterium. A resulting co-integrated plasmid assembled by in vitro manipulation normally contains: the vir genes, the left and right T-DNA borders, an exogenous DNA sequence between the two T-DNA borders, and plant and bacterial selectable markers. -
Genetic Transformation of Hela Cells by Agrobacterium
Genetic transformation of HeLa cells by Agrobacterium Talya Kunik*†‡, Tzvi Tzfira*, Yoram Kapulnik†, Yedidya Gafni†, Colin Dingwall‡§, and Vitaly Citovsky*¶ *Department of Biochemistry and Cell Biology, State University of New York, Stony Brook, NY 11794-5215; †Institute of Field and Garden Crops, Agricultural Research Organization, P.O. Box 6, Bet-Dagan 50250, Israel; and ‡Department of Pharmacology, State University of New York, Stony Brook, NY 11794-8651 Edited by Eugene W. Nester, University of Washington, Seattle, WA, and approved December 8, 2000 (received for review July 13, 2000) Agrobacterium tumefaciens is a soil phytopathogen that elicits the control of the simian-virus-40 early promoter and Herpes- neoplastic growths on the host plant species. In nature, however, simplex virus thymidine kinase polyadenylation signal (derived Agrobacterium also may encounter organisms belonging to other from pEGFP-C1, CLONTECH) subcloned into the Klenow- kingdoms such as insects and animals that feed on the infected blunted EcoRI and HindIII sites of the pPZP221-based binary plants. Can Agrobacterium, then, also infect animal cells? Here, we vector (15), between its right and left nopaline-type T-DNA report that Agrobacterium attaches to and genetically transforms borders. several types of human cells. In stably transformed HeLa cells, the integration event occurred at the right border of the tumor- Bacterial Strains and Host Cell Lines. A. tumefaciens-strain C58C1, inducing plasmid’s transferred-DNA (T-DNA), suggesting bona fide harboring Ti-plasmid pGV3850 (16), was used as host for the T-DNA transfer and lending support to the notion that Agrobac- pNeo binary vector. Strain C58NT1, which does not contain a Ti terium transforms human cells by a mechanism similar to that plasmid (17), was used as control. -
Agrobacterium Tumefaciens-Mediated Transformation of Arabidopsis
Proc. Natl. Acad. Sci. USA Vol. 85, pp. 5536-5540, August 1988 Botany Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana root explants by using kanamycin selection (herbicide resistance/neomycin phosphotransferase II/plant regeneration/tumor-inducing Ti plasmid/transgenic plants) DIRK VALVEKENS, MARC VAN MONTAGU*, AND MIEKE VAN LIJSEBETTENS Laboratorium voor Genetica, Rijksuniversiteit Gent, B-9000 Ghent, Belgium Contributed by Marc Van Montagu, April 5, 1988 ABSTRACT Culture conditions were developed that in- (Landbouwuniversiteit Wageningen); and Arabidopsis eco- duce Arabidopsis thaliana (L.) Heynh. root cuttings to regen- type Columbia, by G. Rddei (Columbia University). erate shoots rapidly and at 100% efficiency. The shoots Agrobacterium Strains. A. tumefaciens C58ClRifR con- produce viable seeds in vitro or after rooting in soil. A taining the nononcogenic tumor-inducing Ti plasmid transformation procedure for Arabidopsis root explants based pGSFR1161 was obtained from J. Botterman (Plant Genetic on kanamycin selection was established. By using this regen- Systems, Ghent, Belgium). pGSFR1161 is a cointegrate eration procedure and an Agrobacterium tumor-inducing Ti vector between pGV2260 (11) and pGSFR161 (Fig. 1). Be- plasmid carrying a chimeric neomycin phosphotransferase II tween the borders of the transferred DNA (T-DNA; portion gene (neo), transformed seed-producing plants were obtained of the Ti plasmid that is transferred to plant cells), the with an efficiency between 20% and 80% within 3 months after construct contains a chimeric bar (13) and neo gene (from gene transfer. F1 seedlings of these transformants showed transposon TnS) under control of the T-DNA TR promoter Mendelian segregation of the kanamycin-resistance trait. The (the dual promoter from the TR-DNA of an octopine Ti transformation method could be applied to three different plasmid) (14); the neo gene encodes neomycin phosphotrans- Arabidopsis ecotypes. -
Plant Virus DNA Replication Processes in Agrobacterium
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 10280-10284, September 1996 Evolution Plant virus DNA replication processes in Agrobacterium: Insight into the origins of geminiviruses? (tomato leaf curl virus/rolling-circle replication/molecular evolution) J. E. RIGDEN*, I. B. DRY, L. R. KRAKE, AND M. A. REZAIANt Division of Horticulture, Commonwealth Scientific and Industrial Research Organization, GPO Box 350, Adelaide 5001, Australia Communicated by Allen Kerr, Adelaide, Australia, July 1, 1996 (received for review May 29, 1996) ABSTRACT Agrobacterium tumefaciens, a bacterial plant the accumulation of these infectious, monomeric viral DNA pathogen, when transformed with plasmid constructs con- species within the bacterial cell. taining greater than unit length DNA of tomato leaf curl geminivirus accumulates viral replicative form DNAs indis- tinguishable from those produced in infected plants. The MATERIALS AND METHODS accumulation of the viral DNA species depends on the pres- Construction of Clones. TLCV ORFs are present on both ence of two origins of replication in the DNA constructs and the virion-sense (encapsidated strand) and the complementary is drastically reduced by introducing mutations into the viral strand of the viral ds replicative form (RF) as shown in Fig. 1. replication-associated protein (Rep or Cl) ORF, indicating Construction of virion-sense ORF mutants is described in that an active viral replication process is occurring in the detail in Rigden et al. (8). These include frame-shift mutations bacterial cell. The accumulation of these viral DNA species is in the Vl ORF at nucleotide position 153 (Vi mutant), in the not affected by mutations or deletions in the other viral open V2 ORF at position 663 (V2 mutant) or in both (V1/V2 reading frames. -
TRANSGENIC PLANTS: Creation
TRANSGENIC PLANTS: Creation Transgenic plants can be produced by Microprojectile bombardment: shooting DNA-coated tungsten or gold particles into plant cells. Electroporation: use of a short burst of electricity to get the DNA into cells. Agrobacterium tumefaciens-mediated transformation: The plant cells are totipotent, therefore a genetically modified single cell can regenerate into a new plant. A. tumefaciens is a soil bacterium responsible for crown gall disease of dicotyledonous plants. The galls or tumors are formed at the junction between the root and the stem of infected plants. After the infection by A. tumefaciens, the plant cells begin to proliferate and form tumors, and they begin to synthesize an arginine derivative called opine. The opines synthesized are usually either nopaline or octopine depending on the strain of A. tumefaciens. These opines are used as energy sources by the infecting bacteria. The ability of A. tumefaciens to induce crown galls in plants is controlled by genetic information carried on Ti plasmid (tumor-inducing plasmid). Ti plasmid has two components the T-DNA (Transferred DNA) and the vir region, which are essential for the transformation of plant cells. During the transformation process, the T-DNA is excised from the Ti plasmid, transferred to a plant cell, and integrated into the DNA of the plant cell. The integration of the T-DNA occurs at random chromosomal sites. In some cases, multiple T-DNA integration events occur in the same cell. Structure of Ti plasmid Structure of the nopaline Ti plasmid pTi C58: ori, origin of replication; Tum, genes responsible for tumor formation;Nos, genes involved in nopaline biosynthesis; Noc, genes involved in the catabolism of nopaline; vir, virulence genes. -
Role of T-DNA Borders in the Transfer Process (Nopaline/Plants/Gene Transfer)
Proc. Natl. Acad. Sci. USA Vol. 83, pp. 4428-4432, June 1986 Genetics Rapid assay of foreign gene expression in leaf discs transformed by Agrobacterium tumefaciens: Role of T-DNA borders in the transfer process (nopaline/plants/gene transfer) R. B. HORSCH AND H. J. KLEE Monsanto Company, 700 Chesterfield Village Parkway, St. Louis, MO 63198 Communicated by Howard A. Schneiderman, February 24, 1986 ABSTRACT We have developed a sensitive leaf disc trans- These data suggest that either transfer or integration is being formation procedure for studying early and/or transient T- directed in a polar fashion from the right border sequence. It DNA expression during Agrobacterium tumefaciens-mediated should be noted that none of these experiments can distin- transformation of plant cells. Using this system, we have guish between transfer and integration, since formation of a examined the function of T-DNA border sequences on the early tumor requires both processes to occur. expression of T-DNA genes and on the stable integration of We have developed a system to measure early expression those genes in infected cells. Deletion of the right border from of T-DNA genes in a plant cell and subsequent stable the T-DNA appears to permit transfer ofT-DNA genes from the integration of those genes. Plant cells are cocultured with A. tumor-inducing (Ti) plasmid but greatly reduces the frequency tumefaciens carrying a T-DNA with the genes for nopaline of their stable integration. A binary vector has been construct- synthase (NOS) and a selectable marker encoding kanamycin ed to permit examination of T-DNA border function in trans to resistance (NOS-NPTII-NOS) (24). -
Genetically Modified Food
GENETICALLY MODIFIED FOOD: CONSUMER BEHAVIOUR TOWARDS IT AND COMMUNICATION TO IMPROVE THE CONSUMER’S PERCEPTION OF IT LIES GOETHALS Thesis Meertalige Bedrijfscommunicatie 2006-2007 Promotor : Prof. Dr. E. ROEGIEST I Beschrijving van de stage Bedrijf Stagebegeleider Afdeling VIB Ann Van Gysel Communicatie Rijvisschestraat 120 Sooike Stoops 9052 Gent tel. 09 / 244 66 11 fax. 09 / 244 66 10 www.vib.be Taakbeschrijving Talen Periode *Verwerking van een enquête rond de Nederlands 22/04/2007 tentoonstelling DE ZAAK DNA. Engels tot *Opstellen van een brochure om 01/06/2007 middelbare school-studenten aan te zetten levenswetenschappen te studeren. *Meewerken aan events zoals Scientists @work en sportdag. *Rondleidingen geven in de labo’s op Vlaanderendag. II A word of thanks to… ... my promoter Prof Dr Roegiest and, in particular, Luc De Bie. I can honestly say that without them and the liberating phone call that I got one year ago, I would never have come this far. I would also like to thank them for the help, tips and tricks concerning the theoretical part of my thesis. ... Ann Van Gysel who gave me the opportunity of doing this traineeship in a pleasant environment like VIB (Flemish Institute for Biotechnology). … Sooike Stoops who guided me during the 6 weeks of my internship, for everything she taught me, for her patience, her enthusiasm and the support she was for me. For the tips and tricks, her corrections, her chats to check if everything was alright … ... the other VIB colleagues of the communication department: Evy, Inge, Joke, Jonas and Niels for sharing their experience, for lending a helping hand, for the nice chats. -
Marc Van Montagu Mary-Dell Chilton Robert T
2013 World Food Prize Marc Van Montagu Mary-Dell Chilton Robert T. Fraley Laureates Belgium United States United States Three distinguished scientists —Marc Van Montagu of Belgium, and Mary-Dell Chilton and Robert T. Fraley of the United States — will share the 2013 World Food Prize for their independent, individual breakthrough achievements in founding, developing, and applying modern agricultural biotechnology. Their research has made it possible for farmers to grow crops with resistance to insects and disease, tolerance to herbicides, and the ability to tolerate extreme variations in climate such as excessive heat and drought.” Building upon the scientific discovery of the Double Helix structure of DNA by Watson and Crick in the 1950s, Van Montagu, Chilton, and Fraley each conducted groundbreaking molecular research on how a plant bacterium could be adapted as a tool to insert genes from another organism into plant cells, which could produce new genetic lines with highly favorable traits. And, they are credited with developing the first transgenic plants. The revolutionary biotechnology discoveries of these three individuals —each working in separate facilities on two continents—unlocked the key to plant cell transformation using recombinant DNA. Their work led to the development of a host of genetically enhanced crops that were grown on more than 170 million hectares around the globe by 17.3 million farmers in 2012. Over 90 percent of these were small resource-poor farmers in developing countries. The combined achievements of the 2013 World Food Prize Laureates, from their work in the laboratory to applying biotechnology innovations in farmers’ fields, have contributed significantly to increasing the quantity and availability of food, and can play a critical role as we face the global challenges of the 21st Century of producing more food, in a sustainable way, while confronting an increasingly volatile climate. -
Ti PLASMID CODED PROTEIN in AGROBACTERIUM TUMEFACIENS
AN ABSTRACT OF THE THESIS OF. Michael Maurice Engelgau for the degree of Master of Science in Biochemistry and Biophysics presented on September 5, 1979 Title: Ti PLASMID CODED PROTEIN IN AGROBACTERIUM TUMEFACIENS Abstract approved: Redacted for privacy I Robert Richard Becker Agrobacterium tumefaciens is a plant pathogenic bacteria which in- cites crown gall tumors. Although virulence has been associated with a 97-156 Mdalton "tumor-inducing" (Ti) plasmid, few potential plasmid gene products have been identified. The objective of this study was to identify plasmid-coded gene products through a comparison of protein fingerprints of virulent and avirulent isogenic strains. This required development of techniques for cell fractionation which could provide comparable protein samples from the various strains of bacteria and a reproducible high resolution method of protein characterization. The analytical system developed consisted of isoelectric focusing in the first dimension followed by SDS-polyacrylamide gel electrophoresis in the second dimension and was capable of reproducibly resolving nearly 500 proteins using this two-dimensional system. A. tumefaciens strain C58, which contains a nopaline Ti plasmid, produced five proteins detected neither in plasmid-free isogenic strains nor in A277. Strain A277, which contains the octopine plasmid, pTiB6 -806, produced three proteins detected neither in plasmid-free isogenic strains nor in C58. Strain A136, a plasmid-free derivative of C58, was deficient in two proteins found in the other three -
Transgenic Plants: from First Successes to Future Applications MIEKE VAN LIJSEBETTENS1,2,*, GEERT ANGENON3 and MARC DE BLOCK4
Int. J. Dev. Biol. 57: 461-465 (2013) doi: 10.1387/ijdb.130063mv www.intjdevbiol.com Transgenic plants: from first successes to future applications MIEKE VAN LIJSEBETTENS1,2,*, GEERT ANGENON3 and MARC DE BLOCK4 1Department of Plant Systems Biology, VIB, 9052 Gent, Belgium, 2Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Gent, Belgium, 3Institute for Molecular Biology and Biotechnology, Vrije Universiteit Brussel, 1050 Brussels, Belgium and 4Bayer CropScience NV, Innovation Center, 9052 Gent, Belgium ABSTRACT This dialogue was held between the Guest Editors of the Special Issue on “Plant Trans- genesis” of the Int. J. Dev. Biol. and Marc De Block. He was one of the first scientists worldwide to obtain transgenic plants transformed with the chimeric selectable marker genes encoding neomy- cin phosphotransferase and bialaphos that confer resistance against the antibiotic kanamycin and the herbicide Basta®/glufosinate, respectively at the Department of Genetics of Ghent University and, later on, at the spin-off company, Plant Genetic Systems. Today, these two genes are still the most frequently utilized markers in transgene technology. Marc De Block chose to work on the improvement of crops in an industrial environment to help realize the production of superior seeds or products. He was part of the team that developed the male sterility/restorer system in canola (Brassica napus var. napus) that led to the first hybrid lines to be commercialized as successful products of transgene technology. In more than 30 years of research, he developed transformation procedures for numerous crops, designed histochemical, biochemical and physiological assays to monitor plant performance, and made original and innovative contributions to plant biology. -
T-DNA from Agrobacterium Ti Plasmid Is in the Nuclear
Proc. Nati. Acad. Sci. USA Vol. 77, No. 7, pp. 4060-4064, July 1980 Botany T-DNA from Agrobacterium Ti plasmid is in the nuclear DNA fraction of crown gall tumor cells (plant tumors/teratomas/fragmentation patterns/chloroplast DNA/mnitochondrial DNA) MARY-DELL CHILTON*t, RANDALL K. SAIKI**, NARENDRA YADAVt, MILTON P. GORDON§, AND FRANCIS QUETIERI Department of Microbiology and Immunology and #Department of Biochemistry, University of Washington, Seattle, Washington 98195; tDepartment of Biology, Washington University, St. Louis, Missouri 63130; and ILaboratoire de Biologie Moleculaire Vegetale, Universit6 Paris-Sud, 91405 Orsay, France Communicated by Armin C. Braun, April 28, 1980 ABSTRACT The crown gall teratosa tumor line BT37, in- present in normal Parthenocissus tricuspidata mitochondrial cited by Agrobacterium tumefaciens strain T37,1has been found DNA (18). to contain part of the tumor-inducing plasmid, Ti T37, of the A final argument supporting the view that either chloroplast inciting strain. This foreign DNA segment, called T-DNA, is maintained at several copies per diplroid tumor cell. We have or mitochondrial DNA might harbor the T-DNA is the evidence examined subcellular DNA fractions from this tumor line in an that T-DNA can be lost from crown gall tumor cells. Braun and effort to determine whether T-DNA is in chloroplasts, mito- his collaborators (19, 20) showed that cloned crown gall tera- chondria, or nuclei. Tumor cell chloroplast DNA exhibited toma tissue could, when grafted to the apex of a decapitated EcoRI and Bst I endonuclease cleavage patterns identical to tobacco plant, give rise to normal-appearing shoots (19, 20), one those of normal tobacco chloroslast DNA. -
The Expression of Foreign Gene Under the Control of Cauliflower Mosaic Virus 35S RNA Promoter
Cell Research (1990), 1, 1-10 The expression of foreign gene under the control of cauliflower mosaic virus 35s RNA promoter Wang Hao and Bai Yongyan Shanghai Institute of Plant Physiology, Academia Sinica. 300 Fenglin Road, Shanghai 200032, China ABSTRACT The promoter region of cauliflower mosaic virus (CaMV) 35s RNA was employed to construct an intermediate expres- sion vector which can be used in Ti plasmid system of Agro- bacterium tumefaciens. The original plasmid, which contains a polylinker between CaMV 35s RNA and its 3' termination signal in pUC18 was modified to have another antibiotic resistance marker (kanamycin resistance gene Kmr) to facili- tate the selection of recombinant with Ti plasmid. Octopine synthase (ocs) structural gene was inserted into this vector downstream of CaMV 35s RNA promoter. This chimaeric gene was introduced into integrative Ti plasmid vector pGV3850, and then transformed into Nicotiana tobaccum cells. A binary plasmid vector was also used to introduce the chimaeric gene into tobacco cells. In both cases, the expression of ocs gene was demonstrated. The amount of oc- topine was much more than the nopaline synthesized by no- paline synthase (nos) gene transferred at the same time with Ti plasmid vector. This demonstrated that CaMV 35s RNA promoter is stronger in transcriptional function than the pro- moter of nos in tobacco cells. Key words: Agrobacterium tumefaciens, gene expression, cauliflower mosaic Cirus 35s RNA promoter. INTRODUCTION During the past decade, extensive research on the Ti plasmid of Agrobacterium tumefaciens has brought development of useful and efficient vectors to introduce fo- reign genes into dicotyledonous plants.