0.1

AF538859.1.1484 sp. oral clone P4PA 156 P4 Class

AY349390.1.1487 Peptostreptococcus sp. oral clone FJ023 Class Clostridia AB298735.1.1472 Anaerosphaera aminiphila Class Clostridia

AF044946.1.1492 Peptostreptococcus sp. S1 Class Clostridia AM176516.1.1421 Peptoniphilus sp. Gpac003 Class Clostridia AF454327.1.1395 uncultured phototrophic eukaryote AF289240.1.1408 Euglena anabaena Class Euglenida AY286545.1.1493 Peptostreptococcus sp. MDA2346−2 Class Clostridia AY948023.1.1412 uncultured phototrophic eukaryote BD287721.2.1685 unidentified Novel polycyclic aromatic hydrocarbon decomposing microorganism AF481225.1.1478AM176519.1.1453 Peptostreptococcus Peptoniphilus sp. E3 sp. 32 gpac018A Class Clostridia Class Clostridia AM420073.1.1489 uncultured Peptostreptococcus sp. Class Clostridia AF289246.1.1394 Euglena tristella Class Euglenida DQ337543.1.1491 swine effluent bacterium CHNDP11 AF289247.1.1423 Eutreptia viridis Class Euglenida DQ337541.1.1491 swine effluent bacterium CHNDP1 AY702164.1.1220 Chlorarachniophyte sp. RCC435 AF287766.1.1519 Eubacterium sp. oralAM176535.1.1445 clone DA014 Class Peptoniphilus Clostridia sp. Gpac148 Class Clostridia

AY167967.1.1525 swine manure bacterium 37−5 AB374385.1.1523 uncultured Chlorophyta AY571338.1.1544 Sedimentibacter hongkongensis Class ClostridiaD14153.1.1370 prevotii Class Clostridia DQ354713.1.1447 uncultured bacterium

AF393605.1.1496 Pedinomonas minor

D11346.1.1545 Parachlorella kessleri

AF393609.1.1493 Scherffelia dubia

DQ286650.1.1406 bacterium HY−42−22 Class Clostridia AY626043.1.1402 Euglena deses

AM696714.1.1480 uncultured bacterium

CU919563.1.1353 uncultured bacterium

AY913838.1.1434 uncultured bacterium AJ488068.1.1625 uncultured bacterium AY397767.1.1443 BrevibacillusAY319301.1.1532 sp. R−6469 Brevibacillus ClassAY570621.1.1493 Bacilliagri Class uncultured bacterium AM292059.1.1373 Brevibacillus brevisAY570631.1.1492 Class Bacilli uncultured bacterium AB210966.1.1491AF378232.1.1488 Brevibacillus Brevibacillus sp. SSCT72 invocatus ClassAF407695.1.1523 Class Bacilli Bacilli uncultured bacterium DQ350827.1.1530 Brevibacillus borstelensis ClassDQ353902.1.1482 Bacilli uncultured bacterium AB001684.22293.23786 Chlorella vulgaris AJ245645.3807.5344 Prototheca wickerhamii AB257654.1.1531 uncultured phototrophic eukaryote DQ059300.1.1495 Prochlorales cyanobacterium EV−7 Class AY327448.1.1506 Geobacillus caldoproteolyticus Class Bacilli AY862008.1.1242 uncultured phototrophic eukaryote AJ292689.1.1494 uncultured eubacterium WD215 D11348.1.1636 AJ867910.1.1695 uncultured AF137379.119714.121227 Nephroselmis olivacea Chlorophyta AB355043.1.1464 uncultured bacterium AY397773.1.1433 Brevibacillus sp. R−7152 Class Bacilli AF393608.1.1518 Pyramimonas parkeae AF001659.1.1490 environmental clone OCS162 DQ422812.109483.110989 Chlorokybus atmophyticus DQ229107.137546.139060 Chara vulgaris AF393593.1.1465 Coleochaete orbicularis AF393611.1.1458 Spirogyra maxima AY425776.1.1412 uncultured phototrophic eukaryote AP004638.91243.92746 Psilotum nudum EUKARYOTE DQ478786.1.1414 Nageia nagi AJ428413.101402.102892 Calycanthus floridus var. glaucus AY493971.1.1460 uncultured soil bacterium RS82 DQ129242.1.1471 uncultured bacterium AP005408.67422.68902 Oryza sativa Japonica Group AC078977.88099.89557 Oryza sativa Japonica Group AF468339.1.1427 uncultured bacterium DQ371235.1.1417 Bacillus sp. E−2006 Class Bacilli AF468341.1.1415 uncultured bacterium DQ070792.1.1389 uncultured Cytophaga sp. Class Cytophagia CP000029.150374.151927 Staphylococcus epidermidis RP62A phage SP−beta Class Bacillus DQ289934.1.1387 uncultured bacterium Phylum Bacteroidetes AM040120.1.1482 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AM934691.1.1522 Bacillus sp. BF98 Class Bacilli DQ269095.1.1244 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AB476194.1.1446 uncultured bacterium AB301495.1.1446 Lewinella marina Class AB301616.1.1451 Lewinella persicus Class Sphingobacteria AY289498.1.1504 Bacillus sp. IDA4740 Class Bacilli AB301494.1.1446 Lewinella lutea Class Sphingobacteria DQ295906.1.1492 uncultured bacterium AY172987.1.1564 Bacillus sp. AF502207.1.1434 uncultured bacterium AY604052.1.1511 uncultured bacterium DQ232754.1.1413 filamentous bacterium Plant1 Iso8 Phylum Bacteroidetes AY606801.1.1548AY603079.1.1442 Bacillus Bacillus alveayuensis sp. STB9 Class Class Bacilli Bacilli DQ447779.1.1427 Bacillus sp. MSFCAY739687.1.1367 3−M1−R−1 Class uncultured Bacilli bacterium CU466727.1.1342 uncultured Bacteroidetes bacterium Phylum Bacteroidetes CU923649.1.1341 uncultured bacterium AY422985.1.1459 Bacillus sp. R−7413 Class Bacilli CU466750.2.1341 uncultured Bacteroidetes bacterium Phylum Bacteroidetes DQ399757.1.1413 Staphylococcus sp. B−4183 Class Bacilli CU921642.1.1352 uncultured bacterium AF314434.1.1374 uncultured bacterium PHOS−HE79 Phylum Bacteroidetes AM749771.1.1396 Bacteroidetes bacterium P373 Phylum Bacteroidetes DQ448745.1.1518 Bacillus sp. CNJ796 PL04 Class Bacillus AB308369.1.1397 bacterium TG124 AB286466.1.1441 uncultured bacterium AY792299.1.1528 uncultured Bacteroidetes bacterium Phylum Bacteroidetes DQ501325.1.1483 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AB504925.1.1451 uncultured bacterium AB073167.1.1548AF227850.1.1518 Bacillus Bacillus sp. KSM−P358 sp. 86348 Class Class Bacilli Bacilli AY218676.1.1507 uncultured bacterium DQ448752.1.1479 Bacilli sp. CNJ958 PL04 Class Bacilli AY302126.1.1455 uncultured bacterium AY211072.1.1494 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AY211071.1.1494 uncultured Bacteroidetes bacterium Phylum Bacteroidetes DQ452024.1.1373 Geobacillus sp. HT10 Class Bacilli AB486140.1.1368 uncultured bacterium AJ879076.1.1518 Anoxybacillus rupiensis Class Bacilli AB486143.1.1369 uncultured bacterium AB240305.1.1451 uncultured bacterium AB264128.1.1432 Flavobacteriaceae bacterium TDMA−34 Class Flavobacteria AF502210.1.1451 uncultured bacterium AB329629.1.1477 Niastella sp. KP03 Class Sphingobacteria AY302116.1.1450 uncultured bacterium DQ450746.1.1200 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AY792298.1.1507 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AF361187.1.1343 Flexibacter sp. CF 1 Class Cytophagia DQ450743.1.1359 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AY959140.1.1508 uncultured bacterium DQ404704.1.1535 uncultured bacterium DQ404695.1.1511 uncultured bacterium RS71 AJ575719.1.1482 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AF368190.1.1449 uncultured Haliscomenobacter sp. Class Sphingobacteria AM935842.1.1361 uncultured Burkholderiales bacterium Class DQ413096.1.1447 uncultured bacterium AJ583191.1.1384 uncultured Bacteroidetes bacterium Phylum Bacteroidetes DQ241391.1.1491 uncultured bacterium AM420146.1.1492 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AJ581593.1.1460 uncultured beta proteobacterium Class Betaproteobacteria CU923340.1.1356 uncultured bacterium AM934953.1.1374 uncultured Burkholderiales bacterium Class Betaproteobacteria AF314421.1.1399 uncultured bacterium PHOS−HE28 Class Bacteroidetes AY491552.1.1520 uncultured bacterium AJ581621.1.1418 uncultured beta proteobacteriumAB487113.1.1358 Class Betaproteobacteriauncultured bacterium CU925607.1.1355 uncultured bacterium CU921805.1.1355 uncultured bacterium CU466718.1.1277 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AB015264.1.1483 uncultured Cytophaga sp. Class Cytophagia AJ853564.1.1453 uncultured bacterium AJ581620.1.1452 uncultured beta proteobacterium Class Betaproteobacteria DQ351926.1.1501 uncultured bacterium AB243253.1.1354 uncultured bacterium Class Bacteroidia DQ351927.1.1493 uncultured bacterium AB234393.1.1355 uncultured Bacteroidales bacterium Class Bacteroidia AJ441220.1.1420 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AB252928.1.1503 uncultured beta proteobacterium Class Betaproteobacteria DQ351784.1.1485 uncultured Bacteroidetes bacterium Phylum Bacteroidetes DQ499310.1.1495 uncultured bacterium AM259822.1.1380 uncultured Flavobacterium sp. Class Flavobacteria AY948374.1.1296 sponge bacterium Zo6 DQ499293.1.1494 uncultured bacterium DQ372843.1.1481 uncultured bacterium AY771779.1.1485 Polaribacter irgensii Class Flavobacteria AF358001.1.1499 uncultured bacterium BD241745.1.1474 unidentified DQ223206.1.1498 uncultured proteobacterium DQ351763.1.1478 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AY555807.1.1460 uncultured bacterium AY962293.1.1444 Lutibacter litoralis Class Flavobacteria AM292398.1.1325 Flavobacteriaceae bacterium enrichment culture clone MH−1864 Class Flavobacteria AB234302.1.1562 Alcaligenes sp.DQ228413.1.1488 TS−MOSK−6 Class uncultured Betaproteobacteria bacterium AJ535255.1.1479 uncultured bacterium AB234243.1.1484 uncultured bacterium AB234299.1.1490 Alcaligenes sp. TS−MOSK−3 Class Betaproteobacteria AF402976.1.1446 uncultured bacterium RS66 AB487860.1.1363 uncultured bacterium AB234301.1.1459 Alcaligenes sp. TS−MOSK−5 Class Betaproteobacteria AB240492.1.1486 uncultured bacterium AF534435.1.1444 uncultured bacterium DQ159185.1.1457 uncultured bacterium DQ499283.1.1484 uncultured bacterium DQ298145.1.1386 uncultured bacterium DQ066988.1.1378 uncultured bacterium AY283260.1.1552 Alcaligenes sp. PCNB−2 Class Betaproteobacteria AY218561.1.1484 uncultured bacterium AY921825.1.1388 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AM936569.1.1351 uncultured Derxia sp. Class Betaproteobacteria CU923678.1.1354 uncultured bacterium AY568512.1.1525 Burkholderia fungorum Class BetaproteobacteriaRS79 DQ298005.1.1432 uncultured soil bacterium RS61 AY509377.1.1407 uncultured Sphingobacteriaceae bacterium Class Sphingobacteria AB240274.1.1480 uncultured bacterium DQ125639.1.1450 uncultured bacterium AY773197.1.1497 Burkholderia sp. Br3469 Class Betaproteobacteria AY491570.1.1420 uncultured bacterium AY922040.1.1388 uncultured Bacteroidetes bacterium Phylum Bacteroidetes CP000378.3048145.3049671 Burkholderia cenocepacia AU 1054 Class BetaproteobacteriaRS64 DQ418544.1.1489 uncultured bacterium AY568509.1.1494 uncultured BurkholderiaDQ264620.1.1505 sp. Class uncultured Betaproteobacteria bacterium AB252093.1.1341 uncultured bacterium DQ490464.1.1485 Sphingobacteriaceae bacterium KVD−1969−11 Class Sphingobacteria AF493691.1.1259 Sphingobacteriaceae str. EP211 Class Sphingobacteria AB240509.1.1485 uncultured bacterium DQ298326.1.1386 uncultured bacterium AAAA02048336.579.2111 Oryza sativa Indica Group AL646053.1205189.1206722 Ralstonia solanacearumDQ490030.1.1494 GMI1000 Class uncultured Betaproteobacteria bacterium DQ248274.1.1484 uncultured soil bacterium DQ235228.1.1475 Pedobacter sandarakinus Class Sphingobacteria RS86RC AF388029.1.1381 Flavobacterium sp. 36 Class Flavobacteria AY945874.1.1501 uncultured bacterium DQ339585.1.1380 Flavobacterium sp. Enf24 Class Flavobacteria AF526940.1.1489 uncultured Ralstonia sp. Class Betaproteobacteria AY957918.1.1527 uncultured bacterium AF385531.1.1415 Pedobacter sp. oral clone AV100 Class Sphingobacteria AM279214.1.1486 Pedobacter rhizospharae Class Sphingobacteria AJ487020.1.1500 uncultured bacteriumRS76 AF385549.1.1478 Flavobacterium−like sp. oral clone AZ123 Class Flavobacteria RS65 AB264126.1.1422 Nubsella zeaxanthinifaciens Class Sphingobacteria AY957931.1.1529 uncultured bacterium DQ298765.1.1522 bacterium 1B1a AY957923.1.1520 uncultured bacterium AB267716.1.1483 Olivibacter ginsengisoli Class Sphingobacteria AB267715.1.1469 Olivibacter soli Class Sphingobacteria DQ207363.1.1364 Kartchner Caverns bacterium PF−H AF494539.1.1238 benzo DQ404909.1.1513 uncultured bacterium DQ083110.1.1480 uncultured bacterium AJ575720.1.1473 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AY945883.1.1500 uncultured bacterium AM114441.1.1290 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AM490403.1.1451 Mucilaginibacter gracilis Class Sphingobacteria AB267719.1.1480 Sphingoterrabacterium composti Class Sphingobacteria AB021341.1.1466 bacterium rM6 AM935155.1.1368 uncultured Sphingoterrabacterium sp. Class Sphingobacteria AB076856.1.1523 Diaphorobacter nitroreducens Class Betaproteobacteria AM934770.1.1368 uncultured Bacteroidetes bacterium PhylumBacteroidetes AY569290.1.1516 uncultured Bacteroidetes bacterium Phylum Bacteroidetes DQ490465.1.1485 Sphingobacteriaceae bacterium KVD−unk−11 Class Sphingobacteria AF364862.1.1425 bacterium BA128 Class Betaproteobacteria AY625146.1.1498 uncultured bacterium AB330392.1.1451 Mucilaginibacter kameinonensis Class Sphingobacteria CP000884.723807.725332 Delftia acidovorans SPH−1AY957894.1.1546 Class Betaproteobacteria uncultured bacterium AF409002.1.1319 Sphingobacteriaceae str. Ellin160 Class Sphingobacteria AY212561.1.1433 uncultured bacterium DQ451472.1.1478 uncultured Bacteroidetes bacterium Phylum Bacteroidetes DQ501321.1.1433 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AY168733.1.1411 uncultured bacterium DQ501320.1.1480 uncultured Bacteroidetes bacterium Phylum Bacteroidetes AJ536763.1.1422 uncultured bacterium DQ351918.1.1450 uncultured bacterium DQ316832.1.1269 uncultured beta proteobacterium Class Betaproteobacteria DQ351924.1.1454 uncultured bacterium AY177358.1.1353 phenanthrene−degrading bacterium 35 Class CP001002.146467.147942 Methylobacterium radiotolerans JCM 2831 Class Alphaproteobacteria DQ065780.1.1456 uncultured bacterium AF358002.1.1453 uncultured bacterium AY922113.1.1346 uncultured alpha proteobacterium Class Alphaproteobacteria AY706442.1.1396 uncultured bacterium AJ518767.1.1242 uncultured alpha proteobacterium Class Alphaproteobacteria AB286367.1.1397 uncultured bacterium CU923508.1.1374 uncultured bacterium D16212.1.1457 Rhodoferax fermentans Class Betaproteobacteria DQ071123.1.1407 uncultured marine bacterium DQ248270.1.1496 uncultured soil bacterium DQ303296.1.1480 uncultured Bradyrhizobium sp. Class Alphaproteobacteria CU919026.2.1309 uncultured bacterium DQ248235.1.1498 uncultured soil bacterium CU919927.2.1313 uncultured bacterium AF523053.1.1486 unculturedCS000359.1.1530 Comamonadaceae Variovorax bacterium paradoxus Class ClassBetaproteobacteria Betaproteobacteria RS78 AJ009470.1.1526 uncultured bacterium SJA−62 Class Betaproteobacteria CU918905.2.1313 uncultured bacterium DQ248272.1.1498 uncultured soil bacterium RS68 DQ395499.1.1472 uncultured RS60 DQ248285.1.1502DQ456289.1.1457DL213327.8.1540 uncultured uncultured soilsynthetic bacterium bacterium construct DQ450758.1.1310 uncultured alpha proteobacterium Class Alphaproteobacteria DQ256489.1.1211 Variovorax paradoxus Class Betaproteobacteria CU927207.1.1306 uncultured bacterium DQ413077.1.1408 uncultured bacterium DQ071483.1.1508 uncultured bacterium DQ336968.1.1445 uncultured bacterium DQ463209.1.1285 uncultured bacterium CU926633.1.1307 uncultured bacterium CU926364.1.1307 uncultured bacterium CU922363.1.1299 uncultured bacterium AB252934.1.1450 uncultured alpha proteobacterium Class Alphaproteobacteria AY957934.1.1474 uncultured bacterium AB247485.1.1471 uncultured bacterium AY081988.1.1463 uncultured bacterium DQ297950.1.1449 uncultured soil bacterium RS83 CU927036.1.1332 uncultured bacterium RS73 CU924130.1.1350 uncultured bacterium RS54 CU918829.2.1326 uncultured bacterium DQ202243.1.1305 uncultured bacterium CP001340.2866137.2867609 Caulobacter crescentus NA1000 Class Alphaproteobacteria DQ177494.1.1453 Caulobacter sp. Tibet−S913 Class Alphaproteobacteria DQ404656.1.1441 uncultured bacterium AM697237.1.1429 uncultured bacterium AACY020355234.491.2006 marine metagenome DQ493433.1.1449 soil bacterium TWE165 DQ163946.1.1446 uncultured bacterium DQ347522.1.1399 Paracoccus sp. B−1012 Class Alphaproteobacteria DQ395857.1.1455 uncultured organism DQ184515.1.1442 Brevundimonas sp. C6B3 Class Alphaproteobacteria AY293404.1.1421 uncultured alpha proteobacterium Class Alphaproteobacteria DQ108394.1.1457 Brevundimonas sp. Tibet−IBa1 Class Alphaproteobacteria DQ177489.1.1431 Brevundimonas sp. Tibet−IX23 Class Alphaproteobacteria DQ468101.1.1444 Ochrobactrum sp. Yw15 Class Alphaproteobacteria CU919014.55.1379 uncultured bacterium DQ351913.1.1498 uncultured bacterium CU918533.1.1283 uncultured bacterium RS77 DQ507209.1.1446 Rhizobium sp. MTR32A Class Alphaproteobacteria AJ879127.1.1445 Sinorhizobium sp. L1 Class Alphaproteobacteria RS67 DQ337551.1.1442 Rhizobium sp. BBCT66 Class Alphaproteobacteria AY863088.1.1410 uncultured bacterium AF250354.1.1401 Sinorhizobium xinjiangense Class Alphaproteobacteria AM084032.1.1466 Sinorhizobium sp. R−25078 Class Alphaproteobacteria DQ337571.1.1448 Rhizobium sp. CHNTR26 Class Alphaproteobacteria D14506.1.1472 Agrobacterium sp. NCPPB1650 Class Alphaproteobacteria RS59 AF508095.1.1212 Agrobacterium tumefaciens Class Alphaproteobacteria AF525841.1.1409 uncultured soil bacterium CU922903.1.1294 uncultured bacterium RS69 AY922072.1.1337 uncultured alpha proteobacterium Class Alphaproteobacteria DQ113413.1.1323 uncultured Bartonella sp. Class Alphaproteobacteria DQ113412.1.1322 uncultured Bartonella sp. Class Alphaproteobacteria

DQ234143.1.1570 uncultured bacterium DQ310730.1.1530 uncultured bacterium DQ354720.1.1487 uncultured bacterium DQ354726.1.1498 uncultured bacterium DQ354709.1.1499 uncultured bacterium DQ234100.1.1513 uncultured Enterobacteriaceae bacterium Class Gammaproteobacteria CP000826.298569.300103 Serratia proteamaculans 568 Class Gammaproteobacteria AY959027.1.1519 uncultured bacterium AY958854.1.1516 uncultured bacterium

DQ125653.1.1474 uncultured bacterium AB101444.1.1532 Acinetobacter junii Class Gammaproteobacteria

DQ492807.1.1480 Pseudoalteromonas sp. BSw20700 Class Gammaproteobacteria

AM396494.1.1500 Acinetobacter sp. SS−2 Class Gammaproteobacteria AY725258.1.1506 uncultured bacterium D87345.1.1504 unculturable Mariana eubacterium no. 1 Class Gammaproteobacteria

AY661995.1.1531 uncultured bacterium

AY838526.1.1522 uncultured bacterium

AY373393.1.1491 uncultured bacterium AY345536.1.1527 unidentified bacterium

AY661996.1.1528 uncultured bacterium

CU920584.1.1304 uncultured bacterium

DQ228378.1.1424 uncultured bacterium

AJ884484.1.1549 Stenotrophomonas sp. Class Gammaproteobacteria AY856842.1.1513 Stenotrophomonas sp. 22 Class Gammaproteobacteria

AY856845.1.1538 Stenotrophomonas sp. 45 Class Gammaproteobacteria DQ465010.1.1523 Pseudomonas sp. VTT E−052911 Class Gammaproteobacteria

AY748888.1.1471 Stenotrophomonas maltophilia Class Gammaproteobacteria AF100731.1.1472 Stenotrophomonas maltophilia Class Gammaproteobacteria

AY663436.1.1431 Stenotrophomonas sp. H2 Class GammaproteobacteriaAJ973277.1.1534 Pseudomonas sp. NN84 Class Gammaproteobacteria

DQ305289.1.1365 Mesorhizobium sp. S1−8DQ104991.1.1399 Class Alphaproteobacteria Mesorhizobium sp. JS 6 Class Alphaproteobacteria AB257640.1.1537 uncultured gamma proteobacterium Class Gammaproteobacteria AY690680.1.1425 Mesorhizobium sp. GC15 Class Alphaproteobacteria

AY820173.1.1481 Stenotrophomonas sp. EBPR−1 Class Gammaproteobacteria

AY515421.1.1431 unculturedAJ318163.1.1443 alpha proteobacterium uncultured Class alpha Alphaproteobacteriaproteobacterium Class Alphaproteobacteria

BA000012.2750005.2751465 Mesorhizobium loti MAFF303099 Class Alphaproteobacteria