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Candida albicans alters the bacterial microbiome of early in vitro oral biofilms

Janus, M.M.; Crielaard, W.; Volgenant, C.M.C.; van der Veen, M.H.; Brandt, B.W.; Krom, B.P. DOI 10.1080/20002297.2016.1270613 Publication date 2017 Document Version Other version Published in Journal of Oral Microbiology License CC BY Link to publication

Citation for published version (APA): Janus, M. M., Crielaard, W., Volgenant, C. M. C., van der Veen, M. H., Brandt, B. W., & Krom, B. P. (2017). Candida albicans alters the bacterial microbiome of early in vitro oral biofilms. Journal of Oral Microbiology, 9(1), [1270613]. https://doi.org/10.1080/20002297.2016.1270613

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UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:26 Sep 2021

OTU # RDP Mix 1 Mix 2 Mix 3 Mix 4 Mix 5 Mix 6 Mix 7 1 Saliva 2 Saliva 3 Saliva 4 Saliva 5 Saliva 6 Saliva OTU_2 ; ; ; ; Veillonellaceae; 210 164 127 166 300 228 253 39 33 23 38 18 22 OTU_1 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus 6548 6489 3869 5261 4192 6328 7366 5210 6772 5394 4678 5110 4995 OTU_3 Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; uncultured bacterium 872 457 647 1021 1182 1131 808 218 63 234 268 174 421 OTU_17 Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella 136 94 27 41 27 67 71 13 9 5 8 7 7 OTU_4 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; uncultured bacterium 1905 2406 3939 2824 3323 1979 1273 2573 1726 2999 3018 2962 2705 OTU_40 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; 39 68 129 78 95 40 32 77 65 83 66 98 80 OTU_5 Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; uncultured bacterium 43 112 524 123 58 52 27 1444 1182 740 989 667 1182 OTU_44 Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; uncultured bacterium 79 53 36 42 39 56 50 5 7 3 2 3 11 OTU_7 Bacteria; Firmicutes; Bacilli; Bacillales; Family XI; Gemella; uncultured bacterium 88 123 158 312 435 196 235 220 131 354 491 426 337 OTU_6 Bacteria; Firmicutes; Bacilli; Lactobacillales 179 247 638 345 401 141 134 276 273 362 552 615 405 OTU_88 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus 41 37 70 59 59 35 40 62 50 74 67 106 65 OTU_10 Bacteria; Actinobacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces 16 22 29 17 33 16 7 16 16 21 25 9 14 OTU_13 Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae 48 13 11 26 12 24 20 2 2 5 4 2 8 OTU_18 Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia 2 4 0 3 23 2 10 4 1 1 1 0 1 OTU_11 Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; uncultured bacterium 13 37 22 24 81 36 65 3 1 8 8 17 16 OTU_38 Bacteria; Firmicutes; ; Clostridiales; Lachnospiraceae; Stomatobaculum; uncultured bacterium 1 0 0 0 0 0 0 0 0 0 0 0 0 OTU_21 Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Atopobium; uncultured bacterium 0 1 2 0 7 2 0 1 0 0 0 1 0 OTU_103 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus 0 0 0 0 1 0 0 1 0 0 0 1 0 OTU_63 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; 4 2 3 10 13 9 3 4 1 1 7 7 3 OTU_15 Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; ; 3 1 0 0 2 2 0 0 0 0 0 0 0 OTU_90 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus 0 0 4 1 0 0 0 6 12 3 6 1 3 OTU_23 Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; 0 0 0 1 2 0 0 0 0 0 0 1 0 OTU_52 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_55 Bacteria; Actinobacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces 1 0 0 0 3 1 0 0 0 0 0 1 2 OTU_24 Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium 11 5 10 3 12 3 10 0 2 0 1 3 2 OTU_28 Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Abiotrophia; uncultured bacterium 0 2 1 7 1 3 3 1 0 9 3 16 5 OTU_19 Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; ; uncultured bacterium 0 2 4 3 0 1 1 0 0 0 1 1 1 OTU_80 Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella 1 0 0 0 0 0 0 0 0 0 0 0 0 OTU_46 Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium 0 0 0 1 0 0 0 1 0 1 0 0 0 OTU_100 Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_31 Bacteria; Actinobacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces; 1 0 0 0 1 1 0 1 0 1 2 3 1 OTU_12 Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella 43 58 48 9 53 48 32 8 3 14 35 12 9 OTU_25 Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; 7 8 12 2 7 10 2 2 4 2 4 1 1 OTU_65 Bacteria; Firmicutes; Bacilli; Bacillales; Family XII; Exiguobacterium; uncultured bacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_59 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; 0 1 0 0 2 0 1 1 0 2 1 0 0 OTU_51 Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella; uncultured bacterium 6 2 2 23 30 29 21 3 4 13 6 12 4 OTU_34 Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum 0 1 0 0 1 0 0 0 0 0 1 0 0 OTU_42 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas 0 0 0 0 0 0 0 1 0 1 0 0 0 OTU_74 Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; ; 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_81 Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus cellulosilyticus 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_61 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_54 Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas 0 0 0 0 0 0 0 0 0 0 0 0 1 OTU_35 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia-Shigella; Escherichia coli 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_67 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_9 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus; Lactococcus lactis 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_36 Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Stomatobaculum; uncultured bacterium 1 0 0 0 0 0 1 0 0 0 0 1 0 OTU_33 Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Aerococcus; uncultured bacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_22 Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; 1 3 1 0 6 0 0 2 0 3 1 1 1 OTU_16 Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella 1 2 2 1 4 1 1 0 0 0 0 0 0 OTU_29 Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium; 0 1 4 0 2 2 0 0 0 0 1 0 0 OTU_27 Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella pallens 3 1 5 3 7 1 6 2 2 1 3 2 0 OTU_20 Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Micrococcaceae; Micrococcus 150 0 0 0 0 0 0 0 0 0 0 0 0 OTU_26 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae 0 1 2 0 0 0 1 0 0 0 0 1 0 OTU_62 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Enhydrobacter; uncultured bacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_47 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_50 Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella 1 0 2 0 0 1 0 0 0 0 0 0 1 OTU_70 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae 0 0 0 0 0 0 0 0 0 0 0 0 1 OTU_98 Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; uncultured; uncultured bacterium 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_96 Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium; 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_53 Bacteria; Firmicutes; Clostridia; Clostridiales; Family XI; Parvimonas; uncultured bacterium 1 0 0 0 0 0 1 0 0 0 0 0 0 OTU_48 Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; 0 0 0 0 1 0 0 1 0 0 0 0 0 OTU_58 Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; uncultured bacterium 2 2 8 6 6 5 1 6 6 12 6 10 12 OTU_69 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus troglodytae 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_8 Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; uncultured bacterium 23 58 126 52 38 25 14 280 124 109 173 180 161 OTU_32 Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella 0 1 5 2 5 0 0 1 0 0 0 0 2 OTU_99 Bacteria; Firmicutes; Clostridia; Clostridiales; Family XI; Anaerosalibacter; poultry manure bacterium MUC6 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_56 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; 0 0 0 0 0 0 0 0 0 0 1 0 0 OTU_39 Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptostreptococcus; uncultured bacterium 3 3 1 1 3 0 0 0 0 0 0 0 0 OTU_30 Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella; uncultured organism 3 0 1 0 1 0 0 2 1 1 0 2 0 OTU_91 Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_14 Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; uncultured bacterium 10 14 21 22 22 19 7 12 10 16 24 20 15 OTU_71 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_86 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus 0 0 1 0 0 0 0 0 0 0 0 1 0 OTU_89 Bacteria; Proteobacteria; Alphaproteobacteria 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_82 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales 0 0 0 0 0 0 0 0 0 0 0 0 0 OTU_72 Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; uncultured Veillonella sp. 1 0 0 0 1 0 1 0 0 0 0 0 0 OTU_85 Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella 0 0 1 0 1 0 0 0 0 0 1 0 0 OTU_41 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia; uncultured bacterium 2 3 1 2 4 1 2 1 0 1 2 3 1 OTU_57 Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria 1 0 0 2 0 0 1 0 0 0 2 2 1 OTU_60 Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae 0 1 1 1 0 0 0 0 0 0 0 0 0 OTU_49 Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella; uncultured bacterium 0 1 1 2 0 0 0 0 0 1 1 0 2 OTU_79 Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; uncultured bacterium 0 0 1 1 1 0 0 0 0 0 0 0 0 OTU_95 Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella 0 0 1 0 0 1 0 0 0 0 0 0 0 OTU_78 Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Bergeyella; uncultured bacterium 0 0 1 0 1 0 0 0 0 1 1 0 0 OTU_43 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae 0 0 1 0 0 0 0 0 0 0 0 0 0 OTU_73 Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas 0 0 1 0 0 0 0 0 0 0 1 0 0 OTU_94 Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; uncultured 0 0 0 1 0 0 0 0 0 0 0 0 0 OTU_76 Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga 0 0 0 1 0 0 0 0 0 1 0 0 0 OTU_97 Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus 0 0 0 1 0 2 0 0 0 1 0 2 0 OTU_66 Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio 0 0 0 0 0 2 0 0 0 0 0 0 0 OTU_64 Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium 0 0 0 0 0 0 0 1 0 0 1 1 1 OTU_68 Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; uncultured bacterium 0 0 0 0 1 0 0 0 0 0 0 0 0 OTU_102 Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; 0 0 0 0 1 0 0 0 0 0 0 0 0 OTU_87 Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Alysiella; uncultured bacterium 0 0 0 0 0 0 0 0 0 0 0 0 1