® + HiRise™

Input ChicagoDovetail™ Hi-C + HiRise™ Size N50

0 3Gb 6Gb 100Mb 150Mb 200Mb 126 Red Alga (Gracilaria vermiculophylla) Rhodophytes 279 Parasitic Euglenoid (Trypanosoma cruzi) 202 Downy Mildew (Peronosclerospora sorghi) Trypanosomes 205 Potato Late Blight Pathogen (Phytophthora infestans) Oomycetes 270 Tortula Moss (Syntrichia caninervis) 115 Bonfire Moss (Funaria hygrometrica) Protists 251 Meadow Spikemoss (Selaginella apoda) 061 Hornwort (Ceratophyllum demersum) Bryophytes 005 Onion (Allium cepa) 067 Coconut (Cocos nucifera) 077 Tropical Spiral Ginger (Costus pulverulentus) 178 East African Highland Banana (Musa acuminata) 007 Black Seed Grass (Alloteropsis semialata) 301 (Zea mays ssp Mexicana) 300 Maize (Zea diploperennis) 108 Weeping Lovegrass (Eragrostis curvula) 265 Giant Rats Tail Grass (Sporobolus pyramidalis) 261 Prairie Cordgrass (Spartina pectinata) 266 Fibrous Dropseed (Sporobolus stapfianus) Monocots 188 African Rice (Oryza glaberrima) 042 Brachypodium (Brachypodium hybridum) 034 Oat (Avena eriantha) 277 Wheat (Triticum aestivum) 278 Wheat Chromosome 7 (Triticum aestivum) 140 Barley (Hordeum vulgare) 141 Barley (Hordeum vulgare) 037 Sugar Beet (Beta vulgaris) 038 Sugar Beet (Beta vulgaris) 063 Quinoa (Chenopodium quinoa) 003 Kiwi (Actinidia melanandra) 282 Blueberry (Vaccinium corymbosum) 283 Blueberry (Vaccinium corymbosum) 082 Globe Artichoke (Cynara cardunculus) 149 Lettuce (Lactuca sativa) 064 Chrysanthemum (Chrysanthemum seticuspe) 248 Daisy Tree (Scalesia gordillo) 129 Prairie Sunflower (Helianthus petiolaris) 009 Ragweed (Ambrosia artemisiifolia) 068 Coffee (Coffea arabica) 069 Coffee (Coffea arabica) 070 Coffee (Coffea arabica) 257 Potato (Solanum bulbocastanum) 258 Tomato (Solanum lycopersicum) 259 Tomato (Solanum lycopersicum) 146 Trumpet Tree (Jacaranda copaia) 127 Violet (Haberlea rhodopensis) Dicots 245 Chia (Salvia hispanica) 113 Ash Tree (Fraxinus excelsior) 285 Veronica (Veronica panormitana) 199 Crevice Pestemon (Penstemon petiolatus) 212 Ribwort Plantain (Plantago lanceolata) 291 Muscadine (Vitis rotundifolia) 292 Grape Vine (Vitis vinifera Cabernet Sauvignon) 293 Grape Vine (Vitis vinifera Cabernet Franc) 294 Grape Vine (Vitis vinifera Sauvignon Blanc) 098 Durian (Durio zibethinus) 125 Cotton (Gossypium turneri) 124 Cotton (Gossypium longicalyx) 123 Cotton (Gossypium herbaceum) 014 Cashew (Anacardium occidentale) 209 Pistachio (Pistacia integerrima) 208 Pistachio (Pistacia atlantica) 210 Pistachio (Pistacia vera) 211 Pistachio (Pistacia vera) 190 Pachycladon exilis (Pachycladon exilis) 220 Kerguelen Cabbage (Pringlea antiscorbutica) 095 Snow Whitlow Grass (Draba nivalis) 023 Alpine Rock Cress (Arabis alpina) 255 White Mustard (Sinapis alba) 044 Black Mustard (Brassica nigra) 043 Rapeseed (Brassica napus) 050 Small Seed False Flax (Camelina microcarpa) 051 Small Seed False Flax Tetraploid (Camelina microcarpa) 053 Shepherd's Purse (Capsella bursapastoris) 054 Shepherd's Purse (Capsella bursapastoris) 055 Shepherd's Purse (Capsella bursapastoris) 161 Cassava (Manihot esculenta) 134 Rubber Tree (Hevea brasiliensis) 223 Almond (Prunus dulcis) 238 Blackberry (Rubus) 239 Raspberry (Rubus) 240 Raspberry (Rubus) 241 Heritage Raspberry (Rubus idaeus) 112 Strawberry (Fragaria ananassa) 059 Chinese Chestnut (Castanea mollissima) 147 Persian Walnut (Juglans regia) 039 Downy Birch (Betula pubescens) 074 Common Hazel (Corylus avellana) 075 Common Hazel (Corylus avellana) 008 Alder (Alnus glutinosa) 252 Coffeeweed (Senna occidentalis) 025 Peanut (Arachis ipaensis) 024 Peanut Ancestor (Arachis duranensis) 166 Barrel Medick ( truncatula) 165 Alfalfa (Medicago sativa) 289 Cowpea (Vigna unguiculata) 290 Cowpea (Vigna unguiculata) 227 Kudzu (Pueraria montana var lobata) 120 Soybean (Glycine max) 244 Choanoflagellate (Salpingoeca rosetta) Choanoflagellates 226 Rust (Puccinia triticina) 242 Bakers Yeast () Basidiomycetes 159 Charcoal Rot (Macrophomina phaseolina) Ascomycetes 121 Powdery Mildew (Golovinomyces orontii isolate MGH) 286 Verticillium Wilt (Verticillium longisporum) 104 Grass Endophytic Fungus (Epichloe elymi) 058 Leaf Sponge (Carteriospongia foliascens) Fungi 272 Demosponge (Tethya wilhelma) 013 Sponge (Amphimedon queenslandica) Poriferans 163 Spotted Jelly (Mastigias papua) 142 Hydra (Hydra) 183 Mountainous Star Coral (Orbicella faveolata) 216 Weedy Coral (Pocillopora damicornis) Cnidarians 002 Elkhorn Coral (Acropora palmata) 164 Acoel Worm (Meara stichopi) Acoels 250 Planarian (Schmidtea mediterranea) Platyhelminths 110 Liver Fluke (Fasciola hepatica) 131 Leech (Helobdella austinensis) Annelids 026 Giant Squid (Architeuthis dux) 243 Sydney Rock Oyster (Saccostrea glomerata) 128 Red Abalone (Haliotis rufescens) Molluscs 045 Nematode (Caenorhabditis brenneri) 133 Soybean Cyst Nematode (Heterodera glycines) Nematodes 145 Deer Tick (Ixodes scapularis) 273 Kauai Long Jawed Spider (Tetragnatha kauaiensis) 195 Common House Spider (Parasteatoda tepidariorum) 086 Water Flea (Daphnia obtusa) 088 Daphnia (Daphnia pulicaria) 087 Water Flea (Daphnia pulex) 274 Tidepool Copepod (Tigriopus californicus) 006 Bathynellacea (Allobathynella bangokensis) 196 Sand Flea (Parhyale hawaiensis) 138 Lobster (Homarus americanus) 275 Stick Insect (Timema cristinae) 158 Tarnished Bug (Lygus lineolaris) 170 Water Strider (Microvelia longipes) 118 Water Strider (Gerris buenoi) 091 Asian Citrus Psyllid (Diaphorina citri) 109 Woolly Apple Aphid (Eriosoma lanigerum) 004 Aphid (Acyrthosiphon pisum) 080 Cat Flea (Ctenocephalides felis) 036 Gall Wasp (Belonocnema treatae) 287 Western Yellowjacket (Vespula pensylvanica) 219 Northern Paper Wasp (Polistes fuscatus) 081 Southern House Mosquito (Culex quinquefasciatus) 156 Sheep Blowfly strain LA07 (Lucilia cuprina cuprina) 234 Apple Maggot (Rhagoletis pomonella) 097 Fly ( serrata) 237 Lesser Grain Borer (Rhyzopertha dominica) Arthropods 132 Red Pine Cone Beetle (Henosepilachna niponica) 271 Yellow Mealworm (Tenebrio molitor) 089 Mountain Pine Beetle (Dendroctonus ponderosae) 256 Rice Weevil (Sitophilus oryzae) 019 Boll Weevil (Anthonomus grandis) 103 Geometer Moth (Eois olivacea) 215 Indian mealmoth (Plodia interpunctella) 116 Greater Wax Moth (Galleria mellonella) 264 Fall Armyworm (Spodoptera frugiperda) 130 Tobacco Budworm (Heliothis virescens) 214 Melissa Blue (Plebejus melissa) 206 Green veined White (Pieris napi abisko) 193 Eastern Tiger Swallowtail (Papilio glaucus) 085 Monarch Butterfly (Danaus plexippus) 225 Acorn Worm (Ptychodera flava) Hemichordates 207 Purple Seastar (Pisaster ochraceus) 099 Rock boring Urchin (Echinometra lucunter) 194 Purple Sea Urchin (Paracentrotus lividus) Echinoderms 151 Japanese Lamprey (Lethenteron japonicum) 203 Lamprey (Petromyzon marinus) 047 Elephant Shark (Callorhinchus milii) 152 Little Skate (Leucoraja erinacea) 263 Great Hammerhead Shark (Sphyrna mokarran) 057 White Shark (Carcharodon carcharias) 011 Bowfin (Amia calva) 135 Goldeye (Hiodon alosoides) 066 Atlantic Herring (Clupea harengus) 182 Rainbow Trout (Oncorhynchus mykiss) 076 Rattail (Coryphaenoides brevibarbis) 180 Round Goby (Neogobius melanostomus) 056 Trevally (Caranx ignobilis) 253 Amberjack (Seriola rivoliana) 136 Halibut (Hippoglossus hippoglossus) 213 European Flounder (Platichthys flesus) 153 Angler (Lophius piscatorius) 171 White Bass (Morone chrysops) 172 Striped bass (Morone saxatilis) 221 Northern Sea Robin (Prionotus carolinus) 224 Sea Goldie (Pseudanthias squamipinnis) 033 Tube Snout (Aulorhynchus flavidus) 200 Yellow Perch (Perca flavescens) 012 Midas Cichlid Fish (Amphilophus citrinellus) 184 Blue Tilapia (Oreochromis aureus) 185 Nile tilapia (Oreochromis niloticus) 168 Atlantic Silverside (Menidia menidia) 084 Pupfish (Cyprinodon brontotheroides) 117 Western Mosquitofish (Gambusia affinis) 218 Guppy (Poecilia reticulata) 298 Highland Swordtail (Xiphophorus malinche) 297 Swordless Swordtail (Xiphophorus birchmanni) 010 Axolotl (Ambystoma mexicanum) 198 Western Spadefoot (Pelobates cultripes) 230 African Bullfrog (Pyxicephalus adspersus) 236 Cane Toad (Rhinella marina) Amphibians 296 ( laevis) 295 Marsabit Clawed Frog (Xenopus borealis) 262 Tuatara (Sphenodon punctatus) 150 Mourning Gecko (Lepidodactylus lugubris) 217 Common Wall Lizard (Podarcis muralis) 031 Common Checkered Whiptail (Aspidoscelis tesselatus) 032 Western Whiptail (Aspidoscelis tigris) 028 New Whiptail (Aspidoscelis neomexicanus) 030 Little Striped Whiptail (Aspidoscelis inornatus) 029 Texas Spotted Whiptail (Aspidoscelis gularis) 284 Komodo Dragon (Varanus komodoensis) 101 Saw Scaled Viper (Echis coloratus) 079 Rattlesnake (Crotalus viridis viridis) 018 Hispaniolan Trunk Anole (Anolis distichus) 204 Desert Horned Lizard (Phrynosoma platyrhinos) 249 Eastern Fence Lizard (Sceloporus undulatus) 021 Spiny Softshell ( spinifera) 267 Mexican Musk Turtle ( triporcatus) 122 Desert ( agassizii) 160 (Malaclemys terrapin) 078 Saltwater Crocodile (Crocodylus porosus) 096 Emu (Dromaius novaehollandiae) 049 Anna's Hummingbird (Calypte anna) 197 Band tailed Pigeon (Patagioenas fasciata) 048 Nicobar Pigeon (Caloenas nicobarica) 073 Danish Tumbler (Columba livia) 071 Northern Bobwhite (Colinus virginianus) 072 Northern Bobwhite (Colinus virginianus) 281 Greater Prairie Chicken (Tympanuchus cupido) 017 Hawaiian Duck (Anas wyvilliana) 015 Laysan Duck (Anas laysanensis) Birds 016 Mallard (Anas platyrhynchos) 235 White breasted Antbird (Rhegmatorhina hoffmannsi) 229 Black headed Bulbul (Pycnonotus atriceps) 254 Eastern Bluebird (Sialia sialis) 167 Song Sparrow (Melospiza melodia) 148 Dark eyed Junco (Junco hyemalis) 157 Halmahera Paradise crow (Lycocorax pyrrhopterus) 022 Florida Scrub Jay (Aphelocoma coerulescens) 154 Cassia Crossbill (Loxia sinesciurus) 114 Chaffinch (Fringilla coelebs) 186 Platypus (Ornithorhynchus anatinus) 247 Tasmanian Devil (Sarcophilus harrisii) 222 South African Rock Hyrax (Procavia capensis capensis) 155 African Elephant (Loxodonta africana) 100 Tenrec (Echinops telfairi) 083 Colugo (Cynocephalus) 062 Fat tailed Dwarf Lemur (Cheirogaleus medius) 191 Western Chimpanzee (Pan troglodytes verus) 139 Human (Homo sapiens) 246 Tufted Capuchin (Sapajus apella) 046 Common Marmoset (Callithrix jacchus) 181 American Pika (Ochotona princeps) 144 13-lined Ground Squirrel (Ictidomys tridecemlineatus) 143 Capybara (Hydrochoerus hydrochaeris) 189 Marsh Rice Rat (Oryzomys palustris) 201 White footed Mouse (Peromyscus leucopus) 065 Bank Vole (Clethrionomys glareolus) 169 European common vole (Microtus arvalis) 001 Spiny Mouse (Acomys cahirinus) 233 African Striped Mouse (Rhabdomys pumilio) 232 Rat (Rattus rattus) 175 Mouse (Mus musculus) 176 Mouse (Mus musculus) 177 Mouse DBA2 (Mus Musculus) 162 Pangolin (Manis tricuspis) 260 Hispaniolan Solenodon (Solenodon paradoxus) 179 Greater Mouse eared Bat (Myotis myotis) 090 Common Vampire Bat (Desmodus rotundus) 092 Sumatran Rhinoceros (Dicerorhinus sumatrensis) 093 Black Rhino (Diceros bicornis) 094 East African Black Rhino (Diceros bicornis michaeli) Mammals 107 Horse (Equus caballus) 105 Donkey (Equus asinus) 106 Donkey (Equus asinus) 268 Meerkat (Suricata suricatta) 192 Lion (Panthera leo) 228 Mountain Lion (Puma concolor) 111 Cat (Felis) 102 California Sea Otter (Enhydra lutris) 052 Dog (Canis lupus familiaris) 027 Antarctic Fur Seal (Arctocephalus gazella) 299 Californian Sea Lion (Zalophus californianus) 137 African River Hippo (Hippopotamus amphibius) 288 Alpaca (Vicugna pacos) 060 Chacoan Peccary (Catagonus wagneri) 269 Pig (Sus) 035 Blue Whale (Balaenoptera musculus) 280 Common Bottlenose Dolphin (Tursiops truncatus) 276 Malayan Lesser Chevrotain (Tragulus javanicus ravus) 020 Baja Pronghorn (Antilocapra americana peninsularis) 119 Masai Giraffe (Giraffa camelopardalis tippelskirchi) 173 Siberian Musk Deer (Moschus moschiferus moschiferus) 174 North Indian Muntjac (Muntiacus muntjak vaginalis) 231 Caribou (Rangifer tarandus) 187 Gemsbok (Oryx gazella) 040 Cattle (Bos indicus) 041 Cattle (Bos taurus) Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name and NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

001 Spiny Mouse (Acomys cahirinus) 1 Spiny Mouse Acomys cahirinus 10068 William Barbazuk, University of Florida 2500 0.77 N/A 126.868

Iliana Baums, Sheila Kitchen, Nicole Fogarty and 002 Elkhorn Coral (Acropora palmata) Webb Miller, Pennsylvania State University 2 Elkhorn Coral Acropora palmata 6131 390 0.28 0.787 6.82

Maren Wellenreuther (Auckland University, The New Zealand Institute for Plant & Food Research Limited), Zac Hanley (The New Zealand Institute for Plant & Food 003 Kiwi (Actinidia Research Limited) 3 Kiwi Actinidia melanandra 165713 758 0.02 0.394 10.682 melanandra)

004 Pea Aphid (Acyrthosiphon pisum) Nancy Moran, University of Texas at Austin 4 Pea Aphid Acyrthosiphon pisum 7029 510 0.52 0.185 132.545

5 Onion Allium cepa 4679 005 Onion (Allium cepa) Richard Finkers, Wageningen UR 16000 0.06 0.436 N/A

Allobathynella 006 Bathynellacea 6 Bathynellacea 1898115 (Allobathynella bangokensis) Do not mention customer or contact name 200 0.01 0.178 N/A bangokensis

Alloteropsis 007 Black Seed Grass 7 Black Seed Grass 435756 Luke Dunning, University of Sheffield 1000 0.18 0.522 N/A semialata (Alloteropsis semialata)

8 Alder Alnus glutinosa 3517 008 Alder (Alnus glutinosa) Jarkko T Salojärvi, University of Helsinki 440 0.15 N/A 8.508

Tom Gilbert (Natural History Museum of Denmark), and Ambrosia 009 Ragweed (Ambrosia Mike Martin (University of Copenhagen) 9 Ragweed 4212 1420 0.03 0.522 N/A artemisiifolia artemisiifolia)

Ambystoma 010 Axolotl (Ambystoma Jeramiah Smith, Stowers Institute for Medical 10 Axolotl 8296 Research 32000 0.03 0.22 N/A mexicanum mexicanum)

Ingo Braasch (Michigan State, project leader) Andrew W. Thompson (Michigan State) Solomon David (Nicholls State University) Allyse Ferrara (Nicholls State University) GenoFish Consortium 11 Bowfin Amia calva 7924 011 Bowfin (Amia calva) 1000 0.02 11.7 41.164

Amphilophus 012 Midas Cichlid Fish 12 Midas Cichlid Fish 61819 Frederico Henning, University of Konstanz 845 0.96 1.273 N/A citrinellus (Amphilophus citrinellus)

Amphimedon 013 Sponge (Amphimedon Sandie Degnan and Bernie Degnan, The University of 13 Sponge 400682 queenslandica) Queensland 166 0.12 0.95 N/A queenslandica

Anacardium 014 Cashew (Anacardium Orzenil da Silva, Brazilian Agricultural Research 14 Cashew 171929 Corporation 377 1.43 3.8 N/A occidentale occidentale)

015 Laysan Duck (Anas 15 Laysan Duck Anas laysanensis 75850 Philip Lavretsky, University of Texas 1000 0.07 0.761 N/A laysanensis)

016 Mallard (Anas 16 Mallard Anas platyrhynchos 8839 Philip Lavretsky, University of Texas 1000 0.07 2.759 N/A platyrhynchos)

017 Hawaiian Duck (Anas 17 Hawaiian Duck Anas wyvilliana 500303 Philip Lavretsky, University of Texas 1000 0.07 8.035 N/A wyvilliana)

018 Hispaniolan Trunk Anole (Anolis 18 Hispaniolan Trunk Anole Anolis distichus 38893 distichus) Richard Glor, University of Kansas 3500 0.02 21.64 N/A

019 Boll Weevil (Anthonomus grandis) 19 Boll Weevil Anthonomus grandis 7044 Fabricio Arraes, EMBRAPA 841 0.02 0.878 23.2

Antilocapra 020 Baja Pronghorn

20 Baja Pronghorn americana 1497538 (Antilocapra americana Harris Lewin, UC Davis 3000 0.07 24.008 N/A

peninsularis peninsularis)

021 Spiny Softshell Turtle 21 Spiny Softshell Turtle Apalone spinifera 55534 Nicole Valenzuela, Iowa State University 2700 0.02 50.794 125.895 (Apalone spinifera)

Aphelocoma 022 Florida Scrub Jay 22 Florida Scrub Jay 39617 (Aphelocoma coerulescens) Nancy Chen, Cornell University 1200 7.66 15.305 74.351 coerulescens

Korbinian Schneeberger, Max Planck Institute for 023 Alpine Rock Cress (Arabis alpina) Plant Breeding Research Cologne 23 Alpine Rock Cress Arabis alpina 50452 337 0.91 1.53 N/A

024 Peanut Ancestor (Arachis 24 Peanut Arachis duranensis 130453 duranensis) David Bertioli, University of Georgia 1100 0.95 0.513 N/A

25 Peanut Arachis ipaensis 130454 025 Peanut (Arachis ipaensis) David Bertioli, University of Georgia 1100 0.136 0.436 N/A

026 Giant Squid (Architeuthis dux) Tom Gilbert, Natural History Museum of Denmark 26 Giant Squid Architeuthis dux 256136 2673 0.03 4.853 N/A Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

027 Antarctic Fur Seal 27 Antarctic Fur Seal Arctocephalus gazella 37190 Joe Hoffman, Bielefeld University 3000 6.21 N/A 139.182 (Arctocephalus gazella)

Aspidoscelis 028 New Mexico Whiptail Peter Baumann, Stowers Institute for Medical 28 New Mexico Whiptail 212526 (Aspidoscelis neomexicanus) Research 1600 0.04 38.583 107.969 neomexicanus

029 Texas Spotted Whiptail Peter Baumann, Stowers Institute for Medical 29 Texas Spotted Whiptail Aspidoscelis gularis 68351 (Aspidoscelis gularis) Research 1498 0.05 40.14 N/A

Aspidoscelis 030 Little Striped Whiptail Peter Baumann, Stowers Institute for Medical 30 Little Striped Whiptail 68352 (Aspidoscelis inornatus) Research 1500 0.05 35.8 N/A inornatus

031 Common Checkered Common Checkered Aspidoscelis Peter Baumann, Stowers Institute for Medical 31 1842987 Whiptail (Aspidoscelis Research 3136 0.041 21.105 106.987 Whiptail tesselatus tesselatus)

032 Western Whiptail Peter Baumann, Stowers Institute for Medical 32 Western Whiptail Aspidoscelis tigris 52180 Research 1541 1.6 32.2 N/A (Aspidoscelis tigris)

033 Tube Snout (Aulorhynchus flavidus) 33 Tube Snout Aulorhynchus flavidus 240152 Sam Yeaman, University of Calgary 500 1.69 3.22 18.04

Jessica Schlueter Eric N Jellen Peter J Maughan 34 Oat Avena eriantha 146534 034 Oat (Avena eriantha) Cory Brouwer Tim Langdon 4000 1.39 2.368 534.822

Balaenoptera 035 Blue Whale (Balaenoptera musculus) Yury Bukhman, Morgridge Institute for Research 35 Blue Whale 9771 3000 6.16 N/A 110.996 musculus

036 Gall Wasp (Belonocnema treatae) 36 Gall Wasp Belonocnema treatae 1159321 Jennifer Drummond, Rice University 1400 0.02 4.5 151

37 Sugar Beet Beta vulgaris 161934 037 Sugar Beet (Beta vulgaris) Mitch McGrath, USDA 1000 12.51 4.596 61.792

38 Sugar beet Beta vulgaris 161934 038 Sugar Beet (Beta vulgaris) Mitch McGrath, USDA 1000 1.4 2.9 59.9

039 Downy Birch (Betula 39 Downy Birch Betula pubescens 38787 Jarkko T Salojärvi, University of Helsinki 880 0.09 0.436 0.525 pubescens)

40 Cattle Bos indicus 9915 040 Cattle (Bos indicus) Elizabeth Ross, University of Queensland 3000 11.15 41.886 62.25

41 Cattle Bos taurus 9913 041 Cattle (Bos taurus) Juan Medrano, UC Davis 3000 12 N/A 104

Brachypodium 042 Brachypodium 42 Brachypodium 1071398 John Vogel, Smithsonian Institution 514 2.63 15.08 N/A hybridum (Brachypodium hybridum)

043 Rapeseed (Brassica 43 Rapeseed Brassica napus 3708 Richard Michelmore, UC Davis 1130 38.83 N/A 73.998 napus)

044 Black Mustard (Brassica nigra) 44 Black Mustard Brassica nigra 3710 Andrew Sharpe, Isobel Parkin, GIFS 600 0.29 0.605 44.582

Caenorhabditis 045 Nematode 45 Nematode 135651 Joanna Buchthal, MIT 190 0.38 0.85 21.836 brenneri (Caenorhabditis brenneri)

046 Common Marmoset 46 Common Marmoset Callithrix jacchus 9483 Ricardo del Rosario, Broad Inst. 3000 0.1 12.4 115.3 (Callithrix jacchus)

047 Elephant Shark Byrappa Venkatesh, Institute of Molecular and Cell 47 Elephant Shark Callorhinchus milii 7868 Biology, A*STAR 1021 1.17 4.649 N/A (Callorhinchus milii)

048 Nicobar Pigeon (Caloenas nicobarica) Beth Shapiro, University of California, Santa Cruz 48 Nicobar Pigeon Caloenas nicobarica 187106 1000 0.17 20.9 N/A

049 Anna's Hummingbird 49 Annas Hummingbird Calypte anna 9244 Erich Jarvis, Duke University 1000 0.05 23.58 N/A (Calypte anna)

050 Small Seed False Flax (Camelina Isobel Parkin, Agriculture and Agri-Food Canada 50 Small Seed False Flax Camelina microcarpa 71324 microcarpa) 250 7.91 8.739 29.061

Small Seed False Flax 051 Small Seed False Flax Tetraploid Isobel Parkin, Agriculture and Agri-Food Canada 51 Camelina microcarpa 71324 (Camelina microcarpa) 500 3.86 5.808 29.886 tetraploid

052 Dog (Canis 52 Dog Canis lupus 9615 Harris Lewin, UC Davis 2499 0.19 20.4 N/A familiaris lupus familiaris)

Capsella 053 Shepherd's Purse Felix Bemm, Max Planck Institute for 53 Shepherds Purse 3719 Developmental Biology 220 4.74 N/A 7.909 bursapastoris (Capsella bursapastoris)

Capsella 054 Shepherd's Purse Felix Bemm, Max Planck Institute for 54 Shepherds Purse 3719 Developmental Biology 220 9.38 N/A 11.292 bursapastoris (Capsella bursapastoris)

Capsella 055 Shepherd's Purse Felix Bemm, Max Planck Institute for 55 Shepherds Purse 3719 Developmental Biology 440 1.07 N/A 15.239 bursapastoris (Capsella bursapastoris) Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

Maren Wellenreuther (Auckland University, The New Zealand Institute for Plant & Food Research Limited), Zac Hanley (The New Zealand Institute for Plant & Food Research Limited) 56 Trevally Caranx ignobilis 376895 056 Trevally (Caranx ignobilis) 687 0.52 14.798 25.279

Carcharodon 057 White Shark (Carcharodon Gavin J. Naylor, Florida Museum of Natural 57 White Shark 13397 carcharias) History 5000 0.03 4.03 144.4 carcharias

Carteriospongia 058 Leaf Sponge James Bell and Nicole Webster, Victoria University 58 Leaf Sponge 593584 (Carteriospongia foliascens) Wellington 1000 0.01 0.194 0.675 foliascens

John E. Carlson, Pennsylvania State University Margaret Staton, University of Tennessee Tatyana Zhebentyayeva, Pennsylvania State University Albert 059 Chinese Chestnut Abbott, Pennsylvania State University and University of Kentucky C. Dana Nelson, USDA Forest Service and 59 Chinese Chestnut Castanea mollissima 60419 800 0.02 2.1 42.963 (Castanea mollissima) University of Kentucky Thomas Swale, Dovetail Company Jared Westbrook, The American Chestnut Foundation

060 Chacoan Peccary 60 Chacoan Peccary Catagonus wagneri 51154 Harris Lewin, UC Davis 3000 0.09 36.887 N/A (Catagonus wagneri)

Ceratophyllum 061 Hornwort (Ceratophyllum 61 Hornwort 4428 demersum) Peter Szovenyi, University of Zurich 120 0.297 0.649 30.598 demersum

062 Fat tailed Dwarf Lemur Rachel C. Williams and Anne D. Yoder, Duke 62 Fat tailed Dwarf Lemur Cheirogaleus medius 9460 (Cheirogaleus medius) University 2700 0.04 50.63 N/A

063 Quinoa (Chenopodium quinoa) volume 542, pages 307?312 (16 February 63 Quinoa Chenopodium quinoa 63459 2017) 1400 1.66 5.36 N/A

Chrysanthemum 064 Chrysanthemum 64 Chrysanthemum 1111766 (Chrysanthemum seticuspe) Customer requested anonymity 3000 0.24 0.387 8.542 seticuspe

Clethrionomys 065 Bank Vole (Clethrionomys glareolus) 65 Bank Vole 447135 No contact name 3000 0.04 23.226 98.461 glareolus

066 Atlantic Herring (Clupea harengus) Leif Anderrson and Mats Petterson, Uppsala 66 Atlantic Herring Clupea harengus 7950 University 948.73 0.78 27.73 N/A

Darlon Lantican and Hayde Galvez 67 Coconut Cocos nucifera 13894 067 Coconut (Cocos nucifera) (University of the Philippines Los Baños) 2700 0.12 0.56 N/A

68 Coffee Coffea arabica 13443 068 Coffee (Coffea arabica) The Arabica Coffee Genome Consortium 1000 0.28 N/A 32.74

69 Coffee Coffea arabica 13443 069 Coffee (Coffea arabica) Juan Medrano, UC Davis 670 1.5 1.91 N/A

70 Coffee Coffea arabica 13443 070 Coffee (Coffea arabica) The Arabica Coffee Genome Consortium 550 0.76 N/A 45.84

071 Northern Bobwhite Brant C. Faircloth, Louisiana State University 71 Northern Bobwhite Colinus virginianus 9014 1100 0.18 15.531 66.87 (Colinus virginianus)

072 Northern Bobwhite 72 Northern Bobwhite Colinus virginianus 9014 Brant Faircloth, Louisiana State University 1100 0.11136 15.531 66.871 (Colinus virginianus)

073 Danish Tumbler (Columba livia) 73 Danish Tumbler Columba livia 8932 Tom Gilbert, University of Copenhagen 1111 3.15 14.2 N/A

074 Common Hazel (Corylus avellana) Shawn Mehlenbacher and Kelly Vining, Oregon 74 Common Hazel Corylus avellana 13451 State University 385 1.03 N/A 49.826

075 Common Hazel (Corylus avellana) Stuart Lucas, Richard Buggs, Nihal Öztolan 75 Hazelnut Corylus avellana 13451 Erol 500 0.01 0.149 18.363

Coryphaenoides 076 Rattail (Coryphaenoides 76 Rattail 473302 brevibarbis) Rus Hoelzel-Durham University 1000 0.02 0.084 N/A brevibarbis

077 Tropical Spiral Ginger 77 Tropical Spiral Ginger Costus pulverulentus 160685 Doug Schemske, MSU 1467 0.03 1.044 47.481 (Costus pulverulentus)

Travis Glenn (University of Georgia, Athens), David Ray (Texas Tech University), & Ed Green 078 Saltwater Crocodile (University of California, Santa Cruz) 78 Saltwater Crocodile Crocodylus porosus 8502 3000 0.21 0 17.7 (Crocodylus porosus)

079 Rattlesnake (Crotalus 79 Rattlesnake Crotalus viridis viridis 8742 Todd Castoe, University of Texas Arlington 1300 0.14 2.472 179.898 viridis viridis)

080 Cat Flea (Ctenocephalides felis) Timothy Driscoll (West Virginia University), Joseph J. 80 Cat Flea Ctenocephalides felis 7515 465 0.06 1.075 71.714 Gillespie (University of Maryland) Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

Culex 081 Southern House Mosquito (Culex 81 Southern House Mosquito 7176 quinquefasciatus) Joanna Buchthal, MIT 580 0.79 1.428 280.33 quinquefasciatus

082 Globe Artichoke (Cynara Sergio Lanteri, University of Turin http:// 82 Globe Artichoke Cynara cardunculus 4265 cardunculus) www.artichokegenome.unito.it). 1000 0.13 N/A 44.8

83 Colugo Cynocephalus 30657 083 Colugo (Cynocephalus) Harris Lewin, UC Davis 3000 0.04 10.14 N/A

Cyprinodon 084 Pupfish (Cyprinodon 84 Pupfish 1987526 Chris Martin, UNC 1000 0.29 0.591 40.223 brontotheroides brontotheroides)

085 Monarch Butterfly (Danaus Peter Andolfatto and Jamie Walters, Princeton 85 Monarch Butterfly Danaus plexippus 13037 University 249 0.72 6.019 9.21 plexippus)

086 Water Flea (Daphnia obtusa) 86 Water Flea Daphnia obtusa 35527 Michael Lynch, Arizona State University 200 0.03 0.222 6.061

087 Water Flea (Daphnia pulex) Michael Pfrender, Galvin Life Science Center 87 Water Flea Daphnia pulex 6669 156 0.49 2.07 N/A

88 Daphnia Daphnia pulicaria 35523 088 Daphnia (Daphnia pulicaria) Joseph R. Shaw, Indiana University 210 0.52 0.451 14.078

Dendroctonus 089 Mountain Pine Beetle Felix Sperling, University of Alberta Funded by 89 Mountain Pine Beetle 77166 (Dendroctonus ponderosae) http://tria-net.srv.ualberta.ca 204 0.47 2.8 18.6 ponderosae

090 Common Vampire Bat Mendoza, et. al., Nature Ecology & volume 90 Common Vampire Bat Desmodus rotundus 9430 (Desmodus rotundus) 2, pages 659-668 (2018) 2000 5.5 27 N/A

Prashant S. Hosmani 1, Mirella Flores-Gonzalez 1, Wayne B. Hunter 2, Susan Brown 3, Lukas A. Mueller 091 Asian Citrus Psyllid 1 and Surya Saha 1 1 Boyce Thompson Institute, 91 Asian Citrus Psyllid Diaphorina citri 121845 Ithaca, NY 14853; 2 USDA-ARS, U.S. Horticultural 500 0.38 N/A 26.686 (Diaphorina citri) Research Laboratory, Fort Pierce, FL 34945 3 Division of Biology, Kansas State University, Manhattan, KS 66506

Dicerorhinus 092 Sumatran Rhinoceros Ollie Ryder, University of California San Diego 92 Sumatran Rhinoceros 89632 3000 0.95 23.8 65.4 sumatrensis (Dicerorhinus sumatrensis)

093 Black Rhino (Diceros Love Dalen, Swedish Museum of Natural History 93 Black Rhino Diceros bicornis 9805 3000 16.2 28.5 N/A bicornis)

Diceros bicornis 094 East African Black Rhino (Diceros 94 East African Black Rhino 310714 bicornis michaeli) Harris Lewin, UC Davis 3000 0.12 18.308 N/A michaeli

095 Snow Whitlow Grass Michael Nowak, Natural History Museum, University of 95 Snow Whitlow Grass Draba nivalis 171823 Oslo 300 0.02 2.27 N/A (Draba nivalis)

Dromaius 096 Emu (Dromaius Qi Zhou (Zhejiang University) and De-shou (Southwest 96 Emu 8790 University) 1000 9.67 11.308 N/A novaehollandiae novaehollandiae)

097 Fruit Fly (Drosophila Steve Chenoweth, University of 97 Fruit Fly Drosophila serrata 7274 Queensland 198 0.94 N/A 30.327 serrata)

Nature Vol. 49, No. 11, Nov. 2017 98 Durian Durio zibethinus 66656 098 Durian (Durio zibethinus) 800 0.6 2.986 22.72

Carlos Prada (University of Rhode Island and 099 Rock boring Urchin Smithsonian Tropical Research Institute) 99 Rock boring Urchin Echinometra lucunter 105361 900 0.25 0.464 28.785 (Echinometra lucunter)

100 Tenrec Echinops telfairi 9371 100 Tenrec (Echinops telfairi) Harris Lewin, UC Davis 3000 45.77 60.391 N/A

101 Saw Scaled Viper (Echis coloratus) 101 Saw scaled Viper Echis coloratus 64175 John Mulley, Bangor University 1300 0.02 27.2 N/A

102 California Sea Otter 102 California Sea Otter Enhydra lutris 34882 Bob Wayne, UCLA 2889 0.02 6.6 N/A (Enhydra lutris)

103 Geometer Moth (Eois Thomas L. Parchman (University of Nevada), 103 Moth Eois olivacea 873491 Lee Dyer 500 0.01 2.604 17.632 olivacea)

104 Grass Endophytic Fungus (Epichloe 104 Fungus Epichloe elymi 55200 elymi) Murray Cox, Massey University 35 0.03 0.24 N/A

105 Donkey Equus asinus 582580 105 Donkey (Equus asinus) Albano Beja-Pereira, University of Porto 3000 7.97 N/A 86.006

Ludo Orlando, Natural History Museum of Denmark 106 Donkey Equus asinus 9793 106 Donkey (Equus asinus) 2320 0.43 15.1 N/A

Ted Kalbfleisch, Medical College of South Carolina 107 Horse Equus caballus 9796 107 Horse (Equus caballus) 2608 0.76 7.98 N/A Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

Mario Caccamo (NIAB), José Carballo (CERZOS), 108 Weeping Lovegrass Bruno Santos (NIAB), Emidio Albertini (University of 108 Weeping Lovegrass Eragrostis curvula 38414 Perugia) 620 0.38 0.791 43.411 (Eragrostis curvula)

109 Woolly Apple Aphid Paul Nabity, University of California-Riverside 109 Woolly Apple Aphid Eriosoma lanigerum 133082 230 2 3.449 29.96 (Eriosoma lanigerum)

110 Liver Fluke (Fasciola 110 Liver Fluke Fasciola hepatica 6192 Steve Paterson, University of Liverpool 1300 0.2 0.49 N/A hepatica)

111 Cat Felis 9682 111 Cat (Felis) No species name or contact name 2700 18.07 67.83 143.051

112 Strawberry (Fragaria 112 Strawberry Fragaria ananassa 3746 Pat Edger (MSU), Steve Knapp (UC Davis) 5200 5.98 2.915 25.189 ananassa)

Richard Buggs, Laura Kelly, Endymion Cooper, Meg 113 Ash Tree (Fraxinus Staton, Jennifer Koch, David Carey, Josiah Seaman, 113 Ash Tree Fraxinus excelsior 38873 John Carlson 880 0.02 0.935 27.2 excelsior)

114 Chaffinch (Fringilla Borja Mila, National Museum of Natural Sciences 114 Chaffinch Fringilla coelebs 37598 1000 0.08 8.032 68.853 coelebs)

115 Bonfire Moss (Funaria 115 Bonfire Moss Funaria hygrometrica 29583 hygrometrica) Peter Szovenyi, University of Zurich 400 0.09 0.63 10.506

116 Greater Wax Moth Bernarda Calla and May Berenbaum, University of 116 Greater Wax Moth Galleria mellonella 7137 Illinois Urbana-Champaign 500 0.03 0.033 8.486 (Galleria mellonella)

Sandra L. Hoffberg et. al., G3: GENES, , GENETICS Early online April 27, 2018; 117 Western Mosquitofish https://doi.org/10.1534/g3.118.200101 117 Western Mosquitofish Gambusia affinis 33528 (Gambusia affinis) 600 0.03 6.65 N/A

118 Water Strider (Gerris 118 Water Strider Gerris buenoi 56086 Abderrahman Khila, CNRS 500 0.34 1.902 2.219 buenoi)

Giraffa 119 Masai Giraffe (Giraffa 119 Masai Giraffe camelopardalis 439328 camelopardalis tippelskirchi) Harris Lewin, UC Davis 3000 3 57.205 N/A

tippelskirchi

Min Xie and Hon-Ming Lam, The Chinese University 120 Soybean Glycine max 3847 120 Soybean (Glycine max) of Hong Kong 1100 2.02 N/A 48.459

121 Powdery Mildew Golovinomyces (Golovinomyces orontii isolate MGH) 121 Powdery Mildew 62715 Jyoti Taneja, UC Berkeley 76 0.95 N/A 11.3 orontii isolate MGH

122 Desert Tortoise (Gopherus agassizii) 122 Desert Tortoise Gopherus agassizii 38772 Greer Dolby, Arizona State University 2900 0.21 28.36 N/A

Gossypium 123 Cotton (Gossypium 123 Cotton 34274 Josh Udall, Brigham Young University 1203 0.09 0.386 N/A herbaceum herbaceum)

124 Cotton (Gossypium 124 Cotton Gossypium longicalyx 34280 Josh Udall, Brigham Young University 1196 28.88 23.861 95.878 longicalyx)

125 Cotton (Gossypium 125 Cotton Gossypium turneri 34284 Josh Udall, Brigham Young University 1980 6.27 N/A 60.445 turneri)

Gracilaria 126 Red Alga (Gracilaria 126 Red Alga 257814 Erik Sotka, College of Charleston 200 0.01 0.303 2.062 vermiculophylla vermiculophylla)

127 Violet (Haberlea 127 Violet Haberlea rhodopensis 121482 BLANK 1500 0.33 N/A 0.149 rhodopensis)

128 Red Abalone (Haliotis 128 Red Abalone Haliotis rufescens 6454 Andrew Severin, Iowa State University 2000 0.59 1.9 N/A rufescens)

129 Prairie Sunflower 129 Prairie Sunflower Helianthus petiolaris 4234 John M. Burke, University of Georgia 3000 13.49 N/A 187.414 (Helianthus petiolaris)

Megan Fritz (University of Maryland), Fred Gould 130 Tobacco Budworm (North Carolina State University) 130 Tobacco Budworm Heliothis virescens 7102 400 0.1 0.82 13.659 (Heliothis virescens)

Helobdella 131 Leech (Helobdella 131 Leech 1366558 David Weisblat, Berkeley 228 0.02 5.126 N/A austinensis austinensis)

Henosepilachna 132 Red Pine Cone Beetle 132 Red Pine Cone Beetle 459490 Kei W. Matsubayashi, Kyushu University 1000 0.01 3.836 N/A niponica (Henosepilachna niponica)

133 Soybean Cyst Nematode 133 Soybean Cyst Nematode Heterodera glycines 51029 (Heterodera glycines) Andrew Severin, Iowa State University 100 0.3 0.437 11.216

134 Rubber Tree (Hevea Nik Pootakham, National Center for Genetic 134 Rubber Tree Hevea brasiliensis 3981 Engineering and Biotechnology 1250 0.51 0.97 N/A brasiliensis)

135 Goldeye (Hiodon 135 Goldeye Hiodon alosoides 54904 John Postlethwait, University of Oregon 800 0.07 5.55 28.166 alosoides) Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

Hippoglossus 136 Halibut (Hippoglossus Carl-Johan Rubin, Uppsala University Don't share 136 Halibut 8267 stats. 700 3.23 N/A 27.18 hippoglossus hippoglossus)

137 East African River Hippo Hippopotamus (Hippopotamus amphibius kiboko) 137 East African River Hippo 575201 Harris Lewin, UC Davis 3000 0.09 4.86 N/A amphibius kiboko

138 Lobster (Homarus 138 Lobster Homarus americanus 6706 BLANK 4000 0.02 0.908 13.672 americanus)

139 Human Homo sapiens 9606 139 Human (Homo sapiens) Mike Snyder, Stanford University 3000 7.79 N/A 127.507

140 Barley Hordeum vulgare 4513 140 Barley (Hordeum vulgare) Nils Stein, IPK 5000 0.08 1.31 N/A

Miriam Schreiber, The James Hutton Institute 141 Barley Hordeum vulgare 4513 141 Barley (Hordeum vulgare) 5000 0.09 4.144 N/A

Rob Steele (University of California, Irvine), Oleg Simakov (Okinawa Institute of Science and 142 Hydra Hydra 6083 142 Hydra (Hydra) Technology) 665 0.05 0.36 N/A

Hydrochoerus 143 Capybara (Hydrochoerus Andrew Crawford, Universidad de los Andes 143 Capybara 10149 hydrochaeris) 3150 0.2 12.2 N/A hydrochaeris

Ictidomys 144 13-lined Ground Squirrel 144 13 lined Ground Squirrel 43179 (Ictidomys tridecemlineatus) BLANK 2500 BLANK N/A N/A tridecemlineatus

145 Deer Tick (Ixodes 145 Deer Tick Ixodes scapularis 6945 Monika Gulia-Nuss, University of Nevada 2100 0.08 0.419 48.591 scapularis)

146 Trumpet Tree (Jacaranda copaia) Brant C. Faircloth, Louisiana State University 146 Trumpet Tree Jacaranda copaia 228396 1000 0.57 1.02 N/A

147 Persian Walnut (Juglans regia) 147 Persian Walnut Juglans regia 51240 David Neale, UC Davis 650 1.61 N/A 32.655

148 Dark eyed Junco (Junco Borja Mila, National Museum of Natural Sciences 148 Dark eyed Junco Junco hyemalis 40217 hyemalis) 1200 0.1 16.736 71.317

149 Lettuce Lactuca sativa 4236 149 Lettuce (Lactuca sativa) Richard Michelmore, UC Davis 2500 0.48 7.87 295.139

Lepidodactylus 150 Mourning Gecko Matt Fujita & Sonal Singhal, University of Michigan 150 Mourning Gecko 47724 2200 0.07 2.59 N/A lugubris (Lepidodactylus lugubris)

Lethenteron 151 Japanese Lamprey Byrappa Venkatesh, Institute of Molecular and Cell 151 Japanese Lamprey 980415 Biology, A*STAR 1600 0.6 1.09 N/A japonicum (Lethenteron japonicum)

152 Little Skate (Leucoraja José Luis Gómez-Skarmeta, CSIC/ 152 Little Skate Leucoraja erinacea 7782 erinacea) Universidad Pablo de Olavide 4000 0.05 0.043 0.053

Steinar Daae Johansen 153 Angler (Lophius ([email protected]), Lars Martin Jakt 153 Angler Lophius piscatorius 8074 800 0.1 9.023 32.801 ([email protected]) and Arseny Dubin piscatorius) ([email protected]), Nord University

154 Cassia Crossbill (Loxia Thomas L. Parchman (University of Nevada), 154 Cassia Crossbill Loxia sinesciurus 64794 sinesciurus) Craig Benkman 1400 3.11 N/A 71.807

155 African Elephant Marc Tollis, PhD Lisa Abegglen, PhD Joshua 155 African Elephant Loxodonta africana 9785 Schiffman, MD Carlo Maley, PhD 3000 94.53 N/A 89.39 (Loxodonta africana)

Lucilia cuprina 156 Sheep Blowfly strain LA07 (Lucilia 156 Sheep Blowfly strain LA07 7375 cuprina cuprina) Max Scott, NCSU 665 0.01 2.34 N/A cuprina

Lycocorax 157 Halmahera Paradise crow Alexander Suh, Uppsala University Hi-C assembly 157 Halmahera Paradise crow 681192 (Lycocorax pyrrhopterus) was done by Phase 1000 6.1 6.63 N/A pyrrhopterus

158 Tarnished Plant Bug 158 Tarnished Plant Bug Lygus lineolaris 50650 OP Perera, USDA 900 0.02 7.673 N/A (Lygus lineolaris)

Macrophomina 159 Charcoal Rot 159 Charcoal Rot 35725 (Macrophomina phaseolina) Frank Martin, USDA 53 3.28 N/A 4.259 phaseolina

160 Diamondback Terrapin 160 Diamondback Terrapin Malaclemys terrapin 8485 (Malaclemys terrapin) Mihai Pop, UMCP 2500 0.44 5.354 141.626

161 Cassava (Manihot Alex Harkess, Donald Danforth Plant Science 161 Cassava Manihot esculenta 3983 Center 800 4.6 N/A 58.013 esculenta)

162 Pangolin Manis tricuspis 358128 162 Pangolin (Manis tricuspis) Harris Lewin, UC Davis 3000 0.03 9.9 N/A

163 Spotted Jelly (Mastigias papua) Michael Dawson & Lauren Schiebelhut, UC Merced 163 Spotted Jelly Mastigias papua 596313 236 0.016 0.537 N/A Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

164 Acoel Worm (Meara 164 Worm Meara stichopi 84115 Andi Hejnol, University of Bergen, Norway 1200 0.06 0.059 N/A stichopi)

Joann Mudge, Nicholas P. Devitt, Diego A. Fajardo, Thiru Ramaraj, Andrew D. Farmer, Xinbin Dai, Zhaohong Zhuang, Peng Zhou, Joseph Guhlin, Christopher D. Town, Maria J. Monteros, Patrick X. 165 Alfalfa Medicago sativa 3879 165 Alfalfa (Medicago sativa) 800 0.27 1.27 N/A Zhao, Jason R. Miller, Kevin A.T. Silverstein, Nevin D. Young

Karen M. Moll, Peng Zhou, Thiruvarangan Ramaraj, 166 Barrel Medick (Medicago Diego Fajardo, Nicholas P. Devitt, Michael J. Sadowsky, 166 Barrel Medick Medicago truncatula 3880 truncatula) Robert M. Stupar, Peter Tiffin, Jason R. Miller, Nevin D. 400 6.48 6.82 N/A Young, Kevin A. T. Silverstein and Joann Mudge

Travis Glenn (University of Georgia, Athens) 167 Song Sparrow (Melospiza melodia) & Kevin Winker (University Alaska, Fairbanks) 167 Song Sparrow Melospiza melodia 44397 970 0.03 5.38 N/A

168 Atlantic Silverside Nina Overgaard Therkildsen, Cornell University 168 Atlantic Silverside Menidia menidia 238744 600 1.33 2.936 18.159 (Menidia menidia)

169 European common vole Laurent Excoffier, Gerald Heckel, 169 European common vole Microtus arvalis 47230 (Microtus arvalis) University of Bern 3000 0.08 25.674 186.607

170 Water Strider (Microvelia longipes) 170 Water Strider Microvelia longipes 1101180 Abderrahman Khila, CNRS 500 0.54 1.892 54.155

Benjamin Reading, Linnea Andersen, Andrew 171 White Bass (Morone Baltzegar, Jason Abernathy, and Adam Fuller 171 White Bass Morone chrysops 46259 643 0.16 5.28 28.018 chrysops)

Benjamin Reading, Linnea Andersen, Andrew 172 Striped bass (Morone Baltzegar, Jason Abernathy, and Adam Fuller 172 Striped bass Morone saxatilis 34816 600 0.03 1.89 25.57 saxatilis)

173 Siberian Musk Deer Moschus moschiferus 173 Siberian Musk Deer 68415 (Moschus moschiferus Harris Lewin, UC Davis 3000 0.05 32.953 N/A moschiferus moschiferus)

Muntiacus muntjak 174 North Indian Muntjac 174 North Indian Muntjac 9887 (Muntiacus muntjak vaginalis) Harris Lewin, UC Davis 3000 1.07 31.541 N/A vaginalis

Thomas Keane, Wellcome Trust Sanger Institute 175 Mouse Mus musculus 10090 175 Mouse (Mus musculus) 2581 0.39 24.089 N/A

Thomas Keane, Wellcome Trust Sanger Institute 176 Mouse Mus musculus 10090 176 Mouse (Mus musculus) 2666 0.36 24.91 N/A

177 Mouse DBA2 (Mus Robert W. Williams and David G. Ashbrook, University 177 Mouse Mus Musculus 10090 2500 4.21 N/A 124.534 Musculus) of Tennessee Health Science Center

East African Highland 178 East African Highland Jaroslav Dolezel, Institute of Experimental Botany 178 Musa acuminata 4641 1750 0.03 1.191 56.71 Banana Banana (Musa acuminata)

179 Greater Mouse eared Bat (Myotis 179 Greater Mouse eared Bat Myotis myotis 51298 myotis) Emma Teeling, University College Dublin 1880 0.05 23.2 N/A

Neogobius 180 Round Goby (Neogobius Jhonatan Sepulveda Villet, University of Wisconsin - 180 Round Goby 47308 melanostomus) Milwaukee 1000 0.13 N/A 0.162 melanostomus

181 American Pika (Ochotona princeps) Mike Russello, University of British Columbia 181 American Pika Ochotona princeps 9978 3000 26.86 14.011 75.838

182 Rainbow Trout Devon Pearse, University of California, Santa Cruz 182 Rainbow Trout Oncorhynchus mykiss 8022 2178 1.67 3.14 N/A (Oncorhynchus mykiss)

183 Mountainous Star Coral Monica Medina, Pennsylvania State University 183 Mountainous Star Coral Orbicella faveolata 48498 (Orbicella faveolata) 500 0.06 1.08 N/A

184 Blue Tilapia (Oreochromis aureus) Qi Zhou (Zhejiang University) and De-shou Wang 184 Blue Tilapia Oreochromis aureus 47969 (Southwest University) 1000 1.71 3.48 36.808

185 Nile tilapia (Oreochromis niloticus) Qi Zhou (Zhejiang University) and De-shou Wang 185 Nile tilapia Oreochromis niloticus 8128 (Southwest University) 1000 2.52 3.94 40.814

Ornithorhynchus 186 Platypus (Ornithorhynchus 186 Platypus 9258 anatinus) Hilary Martin, University of Oxford 2300 6.03 18.7 N/A anatinus

187 Gemsbok Oryx gazella 9958 187 Gemsbok (Oryx gazella) Harris Lewin, UC Davis 3000 1.48 47.027 N/A

188 African Rice (Oryza Rod A. Wing & Jianwei Zhang, Arizona Genomics 188 African Rice Oryza glaberrima 4538 Institute 350 15.13 N/A 26.425 glaberrima)

189 Marsh Rice Rat (Oryzomys palustris) 189 Marsh Rice Rat Oryzomys palustris 37020 Leah Reznikov, University of Florida 2000 0.04 41.341 105.862 Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

190 Pachycladon exilis Jan Bartos, Institute of Experimental Botany AS 190 Pachycladon exilis Pachycladon exilis 414718 CR 550 0.08 1.16 N/A (Pachycladon exilis)

191 Western Chimpanzee (Pan Tomas Marques-Bonet, Institut de Biologia 191 Western Chimpanzee Pan troglodytes verus 37012 troglodytes verus) Evolutiva 3349 0.72 26 N/A

192 Lion Panthera leo 9689 192 Lion (Panthera leo) Ellie Armstrong, Stanford University 2000 10.45 N/A 136.137

193 Eastern Tiger Swallowtail (Papilio Peter Andolfatto and Jamie Walters, Princeton 193 Eastern Tiger Swallowtail Papilio glaucus 45779 glaucus) University 580 0.68 N/A 16.839

194 Purple Sea Urchin Ferdinand Marletaz and Thierry Lepage, CNRS 194 Purple Sea Urchin Paracentrotus lividus 7656 800 0.68 2.57 41.46 (Paracentrotus lividus)

Parasteatoda 195 Common House Spider Jonathan Coddington, Smithsonian 195 Common House Spider 114398 (Parasteatoda tepidariorum) Institution 1400 0.47 4.05 N/A tepidariorum

Anastasios Pavlopoulos (Janelia Research), Michalis Averof (CNRS), Cassandra Extavour 196 Sand Flea (Parhyale (Harvard), Nipam Patel (Berkeley) 196 Sand Flea Parhyale hawaiensis 317513 3600 0.11 0.657 53.695 hawaiensis)

197 Band tailed Pigeon Beth Shapiro, University of California, Santa Cruz 197 Band tailed Pigeon Patagioenas fasciata 372321 1086 0.07 20 N/A (Patagioenas fasciata)

198 Western Spadefoot 198 Western Spadefoot Pelobates cultripes 61616 Ivan Gomez-Mestre, CSIC 3000 0.08 0.055 0.196 (Pelobates cultripes)

199 Crevice Pestemon 199 Crevice Pestemon Penstemon petiolatus 69923 Andrea Wolfe, The Ohio State University 500 0.33 0.371 71.167 (Penstemon petiolatus)

200 Yellow Perch (Perca Jhonatan Sepulveda Villet, University of Wisconsin - 200 Yellow Perch Perca flavescens 8167 Milwaukee 1000 0.92 N/A 31.053 flavescens)

201 White footed Mouse 201 White footed Mouse Peromyscus leucopus 10041 Joanna Buchthal, MIT 3000 0.05 11 N/A (Peromyscus leucopus)

Peronosclerospora 202 Downy Mildew 202 Downy Mildew 230839 Richard Michelmore, UC Davis 300 0.14 N/A 10.236 sorghi (Peronosclerospora sorghi)

203 Lamprey (Petromyzon https://www.nature.com/articles/s41588-017-0036-1 203 Lamprey Petromyzon marinus 7757 marinus) 1052 0.19 0.599 N/A

Phrynosoma 204 Desert Horned Lizard 204 Desert Horned Lizard 52577 Tereza Jezkova, Miami University of Ohio 3000 0.01 63.431 273.213 platyrhinos (Phrynosoma platyrhinos)

205 Potato Late Blight Potato Late Blight Phytophthora Howard Judelson, Noble Research Institute, 205 4787 Pathogen (Phytophthora LLC 216 0.56 1.15 N/A Pathogen infestans infestans)

206 Green veined White Jason Hill, Chris Wheat, Stockholm University 206 Green veined White Pieris napi abisko 78633 350 0.48 4.306 N/A (Pieris napi abisko)

207 Purple Seastar (Pisaster Michael Dawson & Lauren Schiebelhut, UC Merced 207 Purple Seastar Pisaster ochraceus 7612 ochraceus) 1000 0.02 3.532 20.19

208 Pistachio (Pistacia 208 Pistachio Pistacia atlantica 434234 Richard Michelmore, UC Davis 600 0.2 N/A 26.3 atlantica)

209 Pistachio (Pistacia 209 Pistachio Pistacia integerrima 434235 Richard Michelmore, UC Davis 600 0.4 N/A 24.431 integerrima)

210 Pistachio Pistacia vera 55513 210 Pistachio (Pistacia vera) Salih Kafkas, Cukurova University 600 0.08 0.541 22.77

211 Pistachio Pistacia vera 55513 211 Pistachio (Pistacia vera) Salih Kafkas, Cukurova University 600 1.51 N/A 30.63

212 Ribwort Plantain Anna-Liisa Laine, Pezhman Safdari, University 212 Ribwort Plantain Plantago lanceolata 39414 of Helsinki 500 0.07 1.039 6.096 (Plantago lanceolata)

213 European Flounder 213 European Flounder Platichthys flesus 8260 Paolo Momigliano, University of Helsinki 700 0.61 9.628 24.295 (Platichthys flesus)

Zach Gompert, Utah State University Alex Buerkle, 214 Melissa Blue (Plebejus melissa) University of Wyoming Chris Nice, Texas State 214 Melissa Blue Plebejus melissa 155167 University Matt Forister, University of Nevada, Reno 296 0.65 0.985 15.445 James Fordyce, University of Tennessee, Knoxville

215 Indian mealmoth (Plodia 215 Indian mealmoth Plodia interpunctella 58824 interpunctella) Steve Paterson, University of Liverpool 388 1.27 5.09 N/A

Ross Cunning, Racheal A. Bay, Phil Gillette, Andrew Pocillopora 216 Weedy Coral (Pocillopora C. Baker, Nikki Traylor-Knowles, University of 216 Weedy Coral 46731 damicornis) Miami 500 0.03 0.327 N/A damicornis Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

Leif Andersson (Uppsala University), Miguel Carneiro 217 Common Wall Lizard (University of Porto) and Tobias Uller (Lund 217 Common Wall Lizard Podarcis muralis 64176 University) 1500 0.54 15.008 91.9 (Podarcis muralis)

Felix Bemm, Max Planck Institute for 218 Guppy Poecilia reticulata 8081 218 Guppy (Poecilia reticulata) Developmental Biology 739.5 4.25 27.3 N/A

219 Northern Paper Wasp Sara E Miller, Andrew W Legan, Michael Henshaw, 219 Northern Paper Wasp Polistes fuscatus 30207 Katherine L Ostevik, Kieran Samuk, Floria M.K. Uy, 220 4.8 N/A 9.116 (Polistes fuscatus) H. Kern Reeve, Michael J Sheehan

Pringlea 220 Kerguelen Cabbage Isobel Parkin, Agriculture and Agri-Food Canada 220 Kerguelen Cabbage 203624 600 0.46 3.15 35.09 antiscorbutica (Pringlea antiscorbutica)

221 Northern Sea Robin 221 Northern Sea Robin Prionotus carolinus 1266880 Julia Wucherpfennig, Stanford University 600 0.02 0.806 N/A (Prionotus carolinus)

Procavia capensis 222 South African Rock Hyrax 222 South African Rock Hyrax 1973248 (Procavia capensis capensis) Harris Lewin, UC Davis 3000 0.04 9.108 N/A capensis

Ohio State University, project under the 223 Almond Prunus dulcis 3755 223 Almond (Prunus dulcis) supervision of Dr. Jonathan Fresnedo 240 0.0245 0.464 18.229

Pseudanthias 224 Sea Goldie (Pseudanthias 224 Sea Goldie 270578 squamipinnis) Nathaniel Jue, Luis Rocha, Cal Academy 1000 0.03 7.459 27.947 squamipinnis

225 Acorn Worm (Ptychodera flava) Dan Rokhsar, Okinawa Institute of Science and 225 Acorn Worm Ptychodera flava 63121 Technology 1229 0.19 0.98 N/A

226 Leaf Rust (Puccinia 226 Leaf Rust Puccinia triticina 208348 John Fellers, USDA 135 0.54 0.608 8.181 triticina)

Pueraria montana var 227 Kudzu (Pueraria montana var 227 Kudzu 3893 lobata) Ashley Egan 803 0.098 0.464 51.25 lobata

228 Mountain Lion (Puma Chris Willmers, University of California, Santa Cruz 228 Mountain Lion Puma concolor 9696 2519 0.07 28.65 N/A concolor)

229 Black headed Bulbul Frederick Sheldon, Louisiana State 229 Black headed Bulbul Pycnonotus atriceps 182895 University 1300 0.11 17.538 N/A (Pycnonotus atriceps)

Pyxicephalus 230 African Bullfrog 230 African Bullfrog 30357 John Malone, University of Connecticut 1400 2.69 15.058 157.522 adspersus (Pyxicephalus adspersus)

Paul Wilson, Rebekah L. Horn (Trent 231 Caribou (Rangifer University), Micheline Manseau 231 Caribou Rangifer tarandus 9870 (Environment Canada) 3000 0.04 11.8 N/A tarandus)

232 Rat Rattus rattus 10117 232 Rat (Rattus rattus) Johannes Krause, Max Planck Institute 3000 0.04 29.699 110.504

233 African Striped Mouse 233 African Striped Mouse Rhabdomys pumilio 121573 (Rhabdomys pumilio) Ricardo Mallarino, Princeton University 3000 1.43 N/A 80.066

Jeffrey L. Feder, University of Notre Dame, 234 Apple Maggot (Rhagoletis Department of Biological Sciences, Scott P. Egan, 234 Apple Maggot Rhagoletis pomonella 28610 pomonella) 1500 0.05 0.329 41.289 Rice University, Department of Biosciences

Rhegmatorhina 235 White breasted Antbird Brant C. Faircloth, Louisiana State 235 White breasted Antbird 468512 (Rhegmatorhina hoffmannsi) University 1000 0.09 11.806 N/A hoffmannsi

236 Cane Toad (Rhinella Grant Morahan, University of Western Australia 236 Cane Toad Rhinella marina 8386 4000 0.25 1.14 N/A marina)

Rhyzopertha 237 Lesser Grain Borer 237 Lesser Grain Borer 92692 Brenda Oppert, USDA 500 1 7.01 N/A dominica (Rhyzopertha dominica)

238 Blackberry Rubus 23216 238 Blackberry (Rubus) BLANK 350 0.32 1.308 25.812

Only use stats not client information please! 239 Raspberry Rubus 23216 239 Raspberry (Rubus) 300 0.1 1.982 20.147

240 Raspberry Rubus 23216 240 Raspberry (Rubus) BLANK 330 1.26 N/A 19.825

241 Heritage Raspberry (Rubus idaeus) 241 Heritage Raspberry Rubus idaeus 32247 BLANK 330 1.02 N/A 15.196

Saccharomyces 242 Bakers Yeast Jamie Cate, University of California, Berkeley 242 Bakers Yeast 4932 (Saccharomyces cerevisiae) 11 0.09 0.88 N/A cerevisiae

Daniel Powell, Sankar Subramanian, Saowaros 243 Sydney Rock Oyster Suwansa-ard, Min Zhao, Wayne O?Connor, David 243 Sydney Rock Oyster Saccostrea glomerata 157728 Raftos, and Abigail Elizur, University of the Sunshine 792 0.12 0.806 N/A (Saccostrea glomerata) Coast Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

244 Choanoflagellate 244 Choanoflagellate Salpingoeca rosetta 946362 Laura Wetzel, UC Berkeley 60 0.64 N/A 1.702 (Salpingoeca rosetta)

245 Chia Salvia hispanica 49212 245 Chia (Salvia hispanica) Pankaj Jaiswal, Matthew Geniza, OSU 890 0.03 0.573 53.529

246 Tufted Capuchin (Sapajus apella) 246 Tufted Capuchin Sapajus apella 9515 Jessica Lynch Alfaro, UCLA 2500 0.05 27.1 N/A

Paul Hohenlohe, University of Idaho, Andrew 247 Tasmanian Devil Storfer, Washington State University 247 Tasmanian Devil Sarcophilus harrisii 9305 3000 1.85 7.751 N/A (Sarcophilus harrisii)

Tom Gilbert (Natural History Museum of Denmark) 248 Daisy Tree (Scalesia and Mike Martin (University of Copenhagen) 248 Daisy Tree Scalesia gordillo 481597 3500 0.01 0.073 N/A gordillo)

249 Eastern Fence Lizard 249 Eastern Fence Lizard Sceloporus undulatus 8520 Tonia Schwartz, Auburn University 2730 2.41 N/A 265.429 (Sceloporus undulatus)

Markus Grohme, Max Planck Institute of Molecular Cell Biology and Genetics https://www.ncbi.nlm.nih.gov/ Schmidtea 250 Planarian (Schmidtea pubmed/2 9364871 250 Planarian 79327 782 0.71 3.68 N/A mediterranea mediterranea)

Exploring the Unknown Branches on the Tree of Life 251 Meadow Spikemoss Barbara A. Ambrose, Tynisha L. Smalls, Dennis W. 251 Meadow Spikemoss Selaginella apoda 39585 Stevenson, and Damon P. Little Funded by The 88 0.15 0.174 5.158 (Selaginella apoda) Ambrose Monell Foundation

252 Coffeeweed (Senna 252 Coffeeweed Senna occidentalis 126820 BLANK 560 0.08 1.583 24.213 occidentalis)

253 Amberjack (Seriola 253 Amberjack Seriola rivoliana 173321 Andrew Severin, Iowa State University 685 2.3 9.51 N/A rivoliana)

254 Eastern Bluebird (Sialia sialis) Brant C. Faircloth, Louisiana State University 254 Eastern Bluebird Sialia sialis 172413 1000 0.05 31.121 N/A

255 White Mustard (Sinapis alba) Isobel Parkin, Agriculture and Agri-Food Canada 255 White Mustard Sinapis alba 3728 500 4.54 N/A 21.176

256 Rice Weevil (Sitophilus oryzae) 256 Rice Weevil Sitophilus oryzae 7048 Brenda Oppert, USDA 500 2.29 8.027 N/A

Solanum 257 Potato (Solanum 257 Potato 147425 Kelly Vining, OSU 800 2.23 N/A 51.167 bulbocastanum bulbocastanum)

Prashant S Hosmani 1, Mirella Flores-Gonzalez 1, Henri Van de Geest 2, Gabino Sanchez-Perez 2, Sander Peters Solanum 258 Tomato (Solanum 2, Zhangjun Fei 3, James Giovannoni 3, Lukas A Mueller 258 Tomato 4081 1 and Surya Saha 1 1 Boyce Thompson Institute, Ithaca, 950 5.53 N/A 65.518 lycopersicum lycopersicum) NY USA 2 Plant Research International, Wageningen University, Wageningen, Netherlands 3 USDA ARS

Solanum 259 Tomato (Solanum 259 Tomato 4081 Susan Strickler (BTI) and Björn Usadel 1200 0.19 1.075 92.523 lycopersicum lycopersicum)

260 Hispaniolan Solenodon 260 Hispaniolan Solenodon Solenodon paradoxus 79805 (Solenodon paradoxus) Harris Lewin, UC Davis 3000 0.11 42.79 N/A

261 Prairie Cordgrass (Spartina pectinata) Jose L. Gonzalez Hernandez, South Dakota State 261 Prairie Cordgrass Spartina pectinata 65991 University 1600 0.01 0.812 24.995

262 Tuatara (Sphenodon 262 Tuatara Sphenodon punctatus 8508 Neil Gemmel, Brigham Young University 4200 0.35 3.05 N/A punctatus)

263 Great Hammerhead Shark (Sphyrna Mahmood Shivji, Michael J. Stanhope, Cornell 263 Great Hammerhead Shark Sphyrna mokarran 195334 mokarran) University 3780 0.3 6.16 N/A

Spodoptera 264 Fall Armyworm 264 Fall Armyworm 7108 Kiwoong Nam, INRA 350 0.9 N/A 13.151 frugiperda (Spodoptera frugiperda)

Sporobolus 265 Giant Rats Tail Grass 265 Giant Rats Tail Grass 391793 Mel Oliver, U. of Missouri 1050 0.4 N/A 0.392 pyramidalis (Sporobolus pyramidalis)

266 Fibrous Dropseed 266 Fibrous Dropseed Sporobolus stapfianus 56623 Mel Oliver, U. of Missouri 1050 1.02 N/A 2.892 (Sporobolus stapfianus)

Staurotypus 267 Mexican Musk Turtle 267 Mexican Musk Turtle 55537 Nicole Valenzuela, Iowa State University 2700 4.02 N/A 111.34 triporcatus (Staurotypus triporcatus)

268 Meerkat (Suricata Jenny Tung (Duke University), Luis Barreiro, 268 Meerkat Suricata suricatta 37032 and Tim Clutton-Brock 2400 0.1 20.5 N/A suricatta) Genome Size Input Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

269 Pig Sus 9822 269 Pig (Sus) Tim Smith, USDA 2600 2.8 36.5 N/A

270 Tortula Moss (Syntrichia 270 Tortula Moss Syntrichia caninervis 200751 caninervis) Mel Oliver, U. of Missouri 390 0.03 1.131 20.46

271 Yellow Mealworm 271 Yellow Mealworm Tenebrio molitor 7067 Brenda Oppert, USDA 500 0.1 2.013 N/A (Tenebrio molitor)

272 Demosponge (Tethya Gert Wörheide and Sergio Vargas, LMU Munich, 272 Demosponge Tethya wilhelma 463344 www.geobiology.eu 200 0.07 0.388 5.547 wilhelma)

Tetragnatha 273 Kauai Long Jawed Spider Stefan Prost, Dmitri Petrov, UC Berkeley, Stanford 273 Kauai Long Jawed Spider 156853 (Tetragnatha kauaiensis) University 1090 0.28 1.91 N/A kauaiensis

274 Tidepool Copepod Thiago Lima, Scripps Institution of 274 Tidepool Copepod Tigriopus californicus 6832 Oceanography 240 0.3 1.692 15.44 (Tigriopus californicus)

275 Stick Insect (Timema 275 Stick Insect Timema cristinae 61476 Nosil et al. 2018 Science 1300 0.02 8.2 N/A cristinae)

Tragulus javanicus 276 Malayan Lesser Chevrotain (Tragulus 276 Malayan Lesser Chevrotain 9849 javanicus ravus) Harris Lewin, UC Davis 3000 0.09 18.62 N/A ravus

277 Wheat (Triticum 277 Wheat Triticum aestivum 4564 Simon Krattinger, University of Zurich 856 0.02 20.03 N/A aestivum)

Sreya Ghosh (JIC, UK), Brande Wulff (JIC, UK), Miroslava Karafiátová (IEB, Czech Republic), Jaroslav 278 Wheat Chromosome 7 (Triticum Dole?el (IEB, Czech Republic) 278 Wheat Chromosome 7 Triticum aestivum 4565 aestivum) 1000 0.01 0.429 N/A

279 Parasitic Euglenoid 279 Parasitic Euglenoid Trypanosoma cruzi 5693 Rick Tarleton, UGA 100 0.22 N/A 0.916 (Trypanosoma cruzi)

Common Bottlenose 280 Common Bottlenose Dolphin 280 Tursiops truncatus 9739 (Tursiops truncatus) Ben Neely, NIST 2500 0.03 26.6 N/A Dolphin

281 Greater Prairie Chicken 281 Greater Prairie Chicken Tympanuchus cupido 9004 (Tympanuchus cupido) Ryan Phelan, Revive and Restore 897 0.14 12.2 N/A

Vaccinium 282 Blueberry (Vaccinium 282 Blueberry 69266 Hamid Ashrafi, NCSU 600 0.42 1.236 50.381 corymbosum corymbosum)

Vaccinium 283 Blueberry (Vaccinium 283 Blueberry 69266 Patrick P. Edger, Michigan State University 1900 2.68 N/A 36.941 corymbosum corymbosum)

284 Komodo Dragon (Varanus 284 Komodo Dragon Varanus komodoensis 61221 komodoensis) Barney Bishop, George Mason University 1600 0.04 23.2 N/A

VW-trilateral, Volkswagen-Stiftung, Dirk Albach and Veronica 285 Veronica (Veronica Eike Mayland-Quellhorst, Biodiversity and Evolution 285 Veronica 195135 of Plants 700 4.4 N/A 14.462 panormitana panormitana)

Verticillium 286 Verticillium Wilt Hossein Borhan, Agriculture and Agri-Food Canada 286 Verticillium Wilt 100787 70 0.03 N/A 1.26 longisporum (Verticillium longisporum)

287 Western Yellowjacket (Vespula Jessica Purcell, University of California-Riverside 287 Western Yellowjacket Vespula pensylvanica 30213 pensylvanica) 220 0.19 2.54 8.533

Mark Richardson, Kylie Munyard, Larry Croft, Polina Perelman, Fahad Alshanbari, Matthew Jevit, Ahmed Tibary, Belinda Appleton, Terje Raudsepp 288 Alpaca Vicugna pacos 30538 288 Alpaca (Vicugna pacos) 2100 9.86 24.02 N/A

289 Cowpea (Vigna Guojing Li, Xinyi Wu and Pei Xu (Zhejiang Academy of 289 Cowpea Vigna unguiculata 3917 Agricultural Sciences) 620 0.04 3.108 23.296 unguiculata)

290 Cowpea (Vigna Guojing Li, Xinyi Wu and Pei Xu (Zhejiang Academy of 290 Cowpea Vigna unguiculata 3917 Agricultural Sciences) 620 0.04 2.39 35.743 unguiculata)

Florida Agricultural and Mechanical University 291 Muscadine (Vitis (FAMU) /Center for Viticulture & Small Fruit Research 291 Muscadine Vitis rotundifolia 103349 414 0.11 2.437 20.045 rotundifolia)

Vitis vinifera 292 Grape Vine (Vitis vinifera Cabernet 292 Cabernet Sauvignon 29760 Sauvignon) Dario Cantu, University of California Davis 500 12.63 N/A 17.661 Cabernet Sauvignon

Vitis vinifera 293 Grape Vine (Vitis vinifera Cabernet 293 Common Grape Vine 29760 Franc) Dario Cantu, UC Davis 600 0.72 N/A 28.679 Cabernet Franc

Vitis vinifera 294 Grape Vine (Vitis vinifera Sauvignon 294 Common Grape Vine 29760 Blanc) Dario Cantu, UC Davis 600 1.48 N/A 31.149 Sauvignon Blanc

295 Marsabit Clawed Frog (Xenopus 295 Marsabit Clawed Frog Xenopus borealis 8354 borealis) Dan Rokhsar, UC Berkeley, et. al. 2100 4.3 138.72 N/A Genome Size Chicago® + HiRise™ Dovetail™ Hi-C + HiRise™ Input Tree ID # Common Name Genus and Species NCBI TaxID Tree ID Acknowledgement (Name, Institution) (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp) Scaffold N50 (Mbp)

296 African Clawed Frog 296 African Clawed Frog Xenopus laevis 8355 Dan Rokhsar, UC Berkeley 3100 3.4 8.8 32.8 (Xenopus laevis)

Xiphophorus 297 Swordless Swordtail Molly Schumer, Harvard University, Gil Rosenthal, 297 Swordless Swordtail 32469 and Manfred Schartl 750 2.01 2.762 32 birchmanni (Xiphophorus birchmanni)

298 Highland Swordtail Molly Schumer, Harvard University, Gil Rosenthal, 298 Highland Swordtail Xiphophorus malinche 32476 and Manfred Schartl 750 1.9 7.196 31.071 (Xiphophorus malinche)

Zalophus 299 Californian Sea Lion 299 Californian Sea Lion 9704 Claire Peart, Uppsala University 3150 26.13 64.174 138.137 californianus (Zalophus californianus)

300 Maize Zea diploperennis 4576 300 Maize (Zea diploperennis) Jeff Ross-Ibarra, UC Davis 3600 0.07 0.986 N/A

Zea mays ssp 301 Maize (Zea mays ssp Jeffrey Ross-Ibarra, University of California 301 Maize 4577 2000 0.02 0.104 N/A Mexicana Mexicana)