Bean Pod Mottle Virus: a Threat to U.S. Soybean Production

Total Page:16

File Type:pdf, Size:1020Kb

Bean Pod Mottle Virus: a Threat to U.S. Soybean Production View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by UNL | Libraries University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Papers in Plant Pathology Plant Pathology Department 2002 Bean pod mottle virus: A Threat to U.S. Soybean Production Loren J. Giesler University of Nebraska-Lincoln, [email protected] Said A. Ghabrial University of Kentucky Thomas E. Hunt University of Nebraska-Lincoln, [email protected] John H. Hill Iowa State University Follow this and additional works at: https://digitalcommons.unl.edu/plantpathpapers Part of the Plant Pathology Commons Giesler, Loren J.; Ghabrial, Said A.; Hunt, Thomas E.; and Hill, John H., "Bean pod mottle virus: A Threat to U.S. Soybean Production" (2002). Papers in Plant Pathology. 186. https://digitalcommons.unl.edu/plantpathpapers/186 This Article is brought to you for free and open access by the Plant Pathology Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Papers in Plant Pathology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Loren J. Giesler A Threat University of Nebraska, Lincoln Bean pod Said A. Ghabrial to U.S. University of Kentucky, Lexington mottle Thomas E. Hunt Soybean University of Nebraska, Lincoln virus John H. Hill Production Iowa State University, Ames Bean pod mottle virus (BPMV) is wide- ies each of a large (L) and small (S) coat reported (13,49). BPMV RNA-1 encodes spread in the major soybean-growing areas protein (CP) of 41 kDa and 22 kDa, re- five mature proteins required for replica- in the southern and southeastern United spectively. The S-CP occurs in two major tion (from 5 to 3: a protease cofactor States. A severe outbreak of BPMV in the size classes, the intact protein and a C- [32K], a putative helicase [58K], a viral north central and northern Great Plains terminus truncated version. As a conse- genome-linked protein [VPg], a protease states is currently causing serious concern quence of this heterogeneity, BPMV viri- [24K], and a putative RNA-dependent to soybean growers and to the soybean ons have two electrophoretic forms, a RNA polymerase, RdRp [87K]), whereas industry in this region (30). BPMV is effi- slow- and a fast-migrating form, each con- RNA-2 encodes a putative cell-to-cell ciently transmitted in nature, within and taining both M and B nucleoprotein com- movement protein and the two coat pro- between soybean fields, by several species ponents. Intact S-CP converts to the C- teins (13,49). of leaf-feeding beetles. The deleterious terminus-truncated form with ageing of the effects of BPMV infection not only reduce virions and involves a specific, yet little Historical Perspective yield but also reduce seed quality, as seeds understood, proteolytic processing at the Zaumeyer and Thomas first described from infected plants may be discolored. C-terminus (47). BPMV in 1948 on Phaseolus vulgaris L. Furthermore, BPMV predisposes soybeans BPMV genomic RNAs are polyade- var. Tendergreen. In 1948, the virus was to Phomopsis spp. seed infection (85), a nylated, and each has a small basic protein, noted to be readily transmitted mechani- major cause of poor seed quality in soy- VPg, covalently linked to its 5 terminus. cally, and the experimental host range in- bean (78). The recent BPMV outbreak is The BPMV genome is expressed via the cluded several varieties of all groups of linked to the warm winters of the past few synthesis and subsequent cleavage of large snap and dry beans. In further exploration years that have allowed the beetle vectors polyprotein precursors (47). The complete of the BPMV experimental host range, 25 to overwinter and emerge in the spring in nucleotide sequences of the two genomic species including 20 genera of plants were unprecedented numbers (Fig. 1). RNAs of BPMV strain KY-G7 have been evaluated for susceptibility. In this test, Virion Properties and Genome Organization BPMV is a member of the genus Como- virus in the family Comoviridae (93). Like other comoviruses, BPMV has a bipartite positive-strand RNA genome consisting of RNA-1 and RNA-2, which are separately encapsidated in isometric particles 28 nm in diameter (Fig. 2). Virions can be sepa- rated by density gradient centrifugation into three components designated top (T), middle (M), and bottom (B). The T compo- nent contains empty particles, whereas the M and B components contain single mole- %/%VZHHSV cules of RNA-2 (approximately 3.6 kb) or RNA-1 (approximately 6.0 kb), respec- tively. The three components have identical protein composition, consisting of 60 cop- Corresponding author: L. J. Giesler, University of Nebraska, Department of Plant Pathology, Lin- <HDU coln, NE 68583-07222; E-mail: [email protected]. Fig. 1. Number of F2 bean leaf beetles per 50 sweeps from 1989 to 2001 in central Iowa. Means determined by pooling data from a weekly sampling program conducted Publication no. D-2002-0925-01F on three fields at the Iowa State University Johnson Farm, Ames. Courtesy of Larry P. © 2002 The American Phytopathological Society Pedigo, Wai-Ki F. Lam, and Rayda K. Krell, Entomology Department, ISU. 1280 Plant Disease / Vol. 86 No. 12 some varieties of lima bean (Phaseolus incidence (73). In the mideastern region of performed in North Carolina showed that lunatus L.) and soybean (Glycine max L.) North Carolina, 37% of the fields had more infection of the plants needs to occur be- were determined to also be susceptible than 50% of the plants infected in 1983. fore the V6 growth stage to significantly (98). BPMV was first identified as a soy- More recently, BPMV incidence has in- affect yield (71). bean problem in the field in 1951 in Arkan- creased significantly in the north central Seed coat mottling. Soybeans infected sas (87). In 1958, the experimental host region. For example, 70% of 197 fields with BPMV may produce seed with mot- range list was expanded to include Lespe- sampled in Nebraska had BPMV in 2000 tled seed coats. The mottling originates at deza sp., Stizolobium deeringianum Bort., (101). In a recent survey, 73 of 80 counties the hilum and is also referred to as “bleed- and Trifolium incarnatum L. (82). in Iowa had BPMV (67). ing hilum” since hilum color appears to Between the 1960s and the 1980s, most bleed from its normal zone. The coloration BPMV research involved soybean response Impact of BPMV Infection of the hilum is the color of the mottling on and studies on inoculation timing relative on Soybean the seed (Fig. 4F). Quiniones et al. (65) to plant development and its impact on Foliage and pod symptoms. Soybean analyzed seed mottling levels as affected yield (34,55,65,70,79,96). Studies which response to BPMV infection varies. Plant by potential synergistic reactions between established the bean leaf beetle (BLB) symptoms range from a mild chlorotic SMV and BPMV. SMV-infected plants had (Cerotoma trifurcata Forster) (Fig. 3) as mottling of foliage to a severe mosaic, with 92% of the seed lot mottled, and the SMV the primary vector of BPMV were per- the most obvious symptoms appearing on and BPMV combination had 96% of the formed in the 1960s and established the younger leaves (Fig. 4A, C, D) (69,89). seed lot mottled. Soybean varieties differ BLB as the most important vector in south- Depending on the soybean variety, BPMV in the degree of seed mottling in response ern states (60,68,88). Until recently, may cause terminal necrosis and death to BPMV infection (33,100). Mottling of BPMV research was confined to the south- (79). BPMV delays maturity of soybean the seed coat is not a reliable predictor of ern United States, including the Carolinas, stems, causing “green stem” (Fig. 4B) seed coat infection by BPMV. Kentucky, Mississippi, and Arkansas. With (79). The pod mottling symptom that is BPMV has both primary and secondary the recent movement of this virus into the prominent in snap beans is not prominent effects on seed quality. The delay of matur- north central region of the United States, in many soybean cultivars due to pubes- ity of the soybean plant and/or the stress of new interest in the pathology of BPMV has cence, but appears in some (Fig. 4E). the systemic virus infection has been arisen. Yield reduction. BPMV infection can shown to have secondary effects on the reduce soybean yield. According to the plant. Phomopsis seed infection tends to be Distribution of BPMV Compendium of Soybean Diseases, yield higher in BPMV-infected soybean plants After the initial discovery of BPMV in loss ranges between 3 and 52% (24). Over (1,85). SMV infection also increases Pho- soybeans in Arkansas (87), other states a broad geographic range, yield reductions mopsis seed infection (40). Seed infection confirmed its presence. BPMV was con- between 10 and 40% have been reported by Phomopsis occurs during the R7 and R8 firmed in North Carolina and Virginia (82), (10,36,55,69,85). Impact of BPMV on growth stages, when pod and seed moisture Kentucky (27), Mississippi (62), and Lou- yield depends upon the time of virus infec- decline. BPMV infection has been shown isiana (35). In the north central region, tion relative to plant development (Fig. 5), to extend dry down periods, resulting in BPMV has been confirmed in Iowa (64), with early infection giving the highest increased levels of Phomopsis seed infec- Illinois (51), Indiana (K. Perry, personal yield reduction (25). Ross (69) showed that tion (1). communication), Kansas (29), Nebraska mixed infection with BPMV and Soybean (45), Ohio (17), South Dakota (43), and mosaic virus (SMV) reduced yield up to BPMV Diversity Wisconsin (44) and has also been reported 85%.
Recommended publications
  • Bean Pod Mottle Virus Biology and Management in Iowa Jeffrey Donald Bradshaw Iowa State University
    Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 2007 Bean pod mottle virus biology and management in Iowa Jeffrey Donald Bradshaw Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Entomology Commons, and the Plant Pathology Commons Recommended Citation Bradshaw, Jeffrey Donald, "Bean pod mottle virus biology and management in Iowa" (2007). Retrospective Theses and Dissertations. 15938. https://lib.dr.iastate.edu/rtd/15938 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Bean pod mottle virus biology and management in Iowa by Jeffrey Donald Bradshaw A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Co-majors: Entomology; Plant Pathology Program of Study Committee: Marlin E. Rice, Co-major Professor John. H. Hill, Co-major Professor Larry P. Pedigo Matthew E. O’Neal Gary P. Munkvold Daniel S. Nettleton Iowa State University Ames, Iowa 2007 Copyright © Jeffrey Donald Bradshaw, 2007. All rights reserved. UMI Number: 3274880 Copyright 2007 by Bradshaw, Jeffrey Donald All rights reserved. UMI Microform 3274880 Copyright 2007 by ProQuest Information and Learning Company. All rights reserved. This microform edition is protected against unauthorized copying under Title 17, United States Code. ProQuest Information and Learning Company 300 North Zeeb Road P.O.
    [Show full text]
  • Leaf Spot Characteristics of Phomopsis Durionis on Durian (Durio Zibethinus Murray) and Latent Infection of the Pathogen
    ACTA UNIVERSITATIS AGRICULTURAE ET SILVICULTURAE MENDELIANAE BRUNENSIS Volume 64 22 Number 1, 2016 http://dx.doi.org/10.11118/actaun201664010185 LEAF SPOT CHARACTERISTICS OF PHOMOPSIS DURIONIS ON DURIAN (DURIO ZIBETHINUS MURRAY) AND LATENT INFECTION OF THE PATHOGEN Veeranee Tongsri1, Pattavipha Songkumarn1, Somsiri Sangchote1 1 Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Bangkok 10900, Thailand Abstract TONGSRI VEERANEE, SONGKUMARN PATTAVIPHA, SANGCHOTE SOMSIRI. 2016. Leaf Spot Characteristics of Phomopsis Durionis on Durian (Durio Zibethinus Murray) and Latent Infection of the Pathogen. Acta Universitatis Agriculturae et Silviculturae Mendelianae Brunensis, 64(1): 185–193. A survey of leaf spot disease on durian caused by Phomopsis durionis was conducted in durian growing areas in eastern Thailand, Chanthaburi and Trat provinces. It was found that lesions with yellow halos on both mature and young leaves are variable in sizes (1–10 mm in diameter). In this study, nine morphologically distinct isolates of Phomopsis were obtained from durian leaf spots. Some of them produced small number of pycnidia on potato dextrose agar a er incubation for 30 days. Artifi cial inoculation on wounded leaves of durian seedlings, resulted in the production of browning areas with yellow halos and pycnidium formation at 13 days and 20 days a er inoculation, respectively. Furthermore, red-brown spots with yellow halos on leaf tissues were observed at 32 days a er inoculation. High density of Phomopsis was observed in durian symptomless leaves and fl owers indicated the latent infection of the pathogen in the fi elds. Interestingly, crude extract of durian leaf with preformed substances demonstrated inhibition of spore germination and germ tube growth of the pathogen, Phomopsis sp., on water agar.
    [Show full text]
  • Grapevine Trunk Diseases Associated with Fungi from the Diaporthaceae Family in Croatian Vineyards*
    Kaliterna J, et al. CROATIAN DIAPORTHACEAE-RELATED GRAPEVINE TRUNK DISEASES Arh Hig Rada Toksikol 2012;63:471-479 471 DOI: 10.2478/10004-1254-63-2012-2226 Scientifi c Paper GRAPEVINE TRUNK DISEASES ASSOCIATED WITH FUNGI FROM THE DIAPORTHACEAE FAMILY IN CROATIAN VINEYARDS* Joško KALITERNA1, Tihomir MILIČEVIĆ1, and Bogdan CVJETKOVIĆ2 Department of Plant Pathology, Faculty of Agriculture, University of Zagreb, Zagreb1, University of Applied Sciences “Marko Marulić”, Knin2, Croatia Received in February 2012 CrossChecked in August 2012 Accepted in September 2012 Grapevine trunk diseases (GTD) have a variety of symptoms and causes. The latter include fungal species from the family Diaporthaceae. The aim of our study was to determine Diaporthaceae species present in the woody parts of grapevines sampled from 12 vine-growing coastal and continental areas of Croatia. The fungi were isolated from diseased wood, and cultures analysed for phenotype (morphology and pathogenicity) and DNA sequence (ITS1, 5.8S, ITS2). Most isolates were identifi ed as Phomopsis viticola, followed by Diaporthe neotheicola and Diaporthe eres. This is the fi rst report of Diaporthe eres as a pathogen on grapevine in the world, while for Diaporthe neotheicola this is the fi rst report in Croatia. Pathogenicity trials confi rmed Phomopsis viticola as a strong and Diaporthe neotheicola as a weak pathogen. Diaporthe eres turned out to be a moderate pathogen, which implies that the species could have a more important role in the aetiology of GTD. KEY WORDS: Diaporthe, Diaporthe eres, Diaporthe neotheicola, Croatia, pathogenicity, Phomopsis, Phomopsis viticola In Croatia, grapevine (Vitis vinifera L.) is cultivated M. Fisch., and Togninia minima (Tul.
    [Show full text]
  • Viral Diseases of Soybeans
    SoybeaniGrow BEST MANAGEMENT PRACTICES Chapter 60: Viral Diseases of Soybeans Marie A.C. Langham ([email protected]) Connie L. Strunk ([email protected]) Four soybean viruses infect South Dakota soybeans. Bean Pod Mottle Virus (BPMV) is the most prominent and causes significant yield losses. Soybean Mosaic Virus (SMV) is the second most commonly identified soybean virus in South Dakota. It causes significant losses either in single infection or in dual infection with BPMV. Tobacco Ringspot Virus (TRSV) and Alfalfa Mosaic Virus (AMV) are found less commonly than BPMV or SMV. Managing soybean viruses requires that the living bridge of hosts be broken. Key components for managing viral diseases are provided in Table 60.1. The purpose of this chapter is to discuss the symptoms, vectors, and management of BPMV, SMV, TRSV, and AMV. Table 60.1. Key components to consider in viral management. 1. Viruses are obligate pathogens that cannot be grown in artificial culture and must always pass from living host to living host in what is referred to as a “living or green” bridge. 2. Breaking this “living bridge” is key in soybean virus management. a. Use planting dates to avoid peak populations of insect vectors (bean leaf beetle for BPMV and aphids for SMV). b. Use appropriate rotations. 3. Use disease-free seed, and select tolerant varieties when available. 4. Accurate diagnosis is critical. Contact Connie L. Strunk for information. (605-782-3290 or [email protected]) 5. Fungicides and bactericides cannot be used to manage viral problems. 60-541 extension.sdstate.edu | © 2019, South Dakota Board of Regents What are viruses? Viruses that infect soybeans present unique challenges to soybean producers, crop consultants, breeders, and other professionals.
    [Show full text]
  • Management of Strawberry Leaf Blight Disease Caused by Phomopsis Obscurans Using Silicate Salts Under Field Conditions Farid Abd-El-Kareem, Ibrahim E
    Abd-El-Kareem et al. Bulletin of the National Research Centre (2019) 43:1 Bulletin of the National https://doi.org/10.1186/s42269-018-0041-2 Research Centre RESEARCH Open Access Management of strawberry leaf blight disease caused by Phomopsis obscurans using silicate salts under field conditions Farid Abd-El-Kareem, Ibrahim E. Elshahawy and Mahfouz M. M. Abd-Elgawad* Abstract Background: Due to the increased economic and social benefits of the strawberry crop yield in Egypt, more attention has been paid to control its pests and diseases. Leaf blight, caused by the fungus Phomopsis obscurans, is one of the important diseases of strawberry plants. Therefore, effect of silicon and potassium, sodium and calcium silicates, and a fungicide on Phomopsis leaf blight of strawberry under laboratory and field conditions was examined. Results: Four concentrations, i.e., 0, 2, 4, and 6 g/l of silicon as well as potassium, sodium and calcium silicates could significantly reduce the linear growth of tested fungus in the laboratory test where complete inhibition of linear growth was obtained with 6 g/l. The other concentrations showed less but favorable effects. The highest reduction of disease severity was obtained with potassium silicate and calcium silicate separately applied as soil treatment combined with foliar spray which reduced the disease incidence by 83.3 and 86.7%, respectively. Other treatments showed significant (P ≤ 0.05) but less effect. The highest yield increase was obtained with potassium silicate and calcium silicate applied as soil treatment combined with foliar spray which increased fruit yield by 60 and 53.8%, respectively.
    [Show full text]
  • The Perfect Stage of the Fungus Which Causes Melanose of Citrus1
    THE PERFECT STAGE OF THE FUNGUS WHICH CAUSES MELANOSE OF CITRUS1 By FREDERICK A. WOLF Pathologist, Office of Fruit Diseases, Bureau of Plant Industry, United States Depart- ment of Agriculture INTRODUCTION A disease of citrus and related plants to which the common name melanose is applied was ffrst recognized near Citra, Fla., by Swingle and Webber 2 in 1892. Their account of the disease, published in 1896, states that in their opinion it was caused by a " vegetable parasite" which they were not able to isolate in culture. In 1912 a paper by Fawcett3 was published in which he set forth the results of his investigations on a type of stem-end decay of fruits, and he as- cribed the cause of the decay to a previously undescribed organism which he designated PJiomopsis citri. The relationship between this stem-end rot and melanose was not suspected at first. Evidence has been presented by Floyd and Stevens,4 however, and by others who have investigated this problem, which shows that the two forms are undoubtedly caused by one and the same fungus. The rules of proof to establish this relationship have never been completely followed, because thus far it has not been possible for anyone to isolate Pho- mopsis citri from melanose lesions on leaves, twigs, and fruits. In July, 1925, the present writer found, on fallen decaying twigs of lime (Citrus aurantifolia Swingle), on the grounds of the United States Citrus-Disease Field Laboratory, Orlando, Fia., a species of Diaporthe. Since several species of the form genus Phomopsis are known to have an ascigerous stage belonging to the genus Diaporthe, it was suspected that these specimens were those of the perfect stage of Phomopsis citri.
    [Show full text]
  • Citrus Melanose (Diaporthe Citri Wolf): a Review
    Int.J.Curr.Microbiol.App.Sci (2014) 3(4): 113-124 ISSN: 2319-7706 Volume 3 Number 4 (2014) pp. 113-124 http://www.ijcmas.com Review Article Citrus Melanose (Diaporthe citri Wolf): A Review K.Gopal*, L. Mukunda Lakshmi, G. Sarada, T. Nagalakshmi, T. Gouri Sankar, V. Gopi and K.T.V. Ramana Dr. Y.S.R. Horticultural University, Citrus Research Station, Tirupati-517502, Andhra Pradesh, India *Corresponding author A B S T R A C T K e y w o r d s Citrus Melanose disease caused by Diaporthe citri Wolf is a fungus that causes two distinct diseases on Citrus species viz, the perfect stage of the fungus causes Citrus melanose, disease characterized by lesions on fruit and foliage and in the imperfect Melanose; stage; it causes Phomopsis stem-end rot, a post-harvest disease. It is one of the Diaporthe most commonly observed diseases of citrus worldwide. As the disease is occurring citri; in larger proportions and reducing marketable fruit yield hence, updated post-harvest information on its history of occurrence, disease distribution and its impact, disease pathogen and its morphology, disease symptoms, epidemiology and management are briefly reviewed in this paper. Introduction Citrus Melanose occurs in many citrus fungus does not normally affect the pulp. growing regions of the world and infects On leaves, the small, black, raised lesions many citrus species. It affects young are often surrounded by yellow halos and leaves and fruits of certain citrus species can cause leaf distortion. On the fruit, the or varieties when the tissues grow and disease produces a superficial blemish expand during extended periods of rainy which is unlikely to affect the overall yield or humid weather conditions.
    [Show full text]
  • Diaporthe Vaccinii
    EuropeanBlackwell Publishing Ltd and Mediterranean Plant Protection Organization PM 7/86 (1) Organisation Européenne et Méditerranéenne pour la Protection des Plantes Diagnostics Diagnostic Diaporthe vaccinii Specific scope Specific approval and amendment This standard describes a diagnostic protocol for Diaporthe Approved in 2008-09. vaccinii1. Introduction Diaporthe vaccinii Shear (anamorph Phomopsis vaccinii Shear) is recorded on stems, shoots and leaves of cultivated Vaccinium corymbosum L. (blueberry), V. macrocarpon Aiton (American cranberry), V. vitis-idaea L. (cowberry) and autochtonous species of European V. myrtillus L., (blueberry), V. oxycoccus L. (cranberries). D. vaccinii causes phomopsis canker and dieback, twig blight, viscid rot (fruit rot). It is common in temperate climate areas of North America: Canada (Nova Scotia), USA (in 11 States). There are a few reports of this fungus on plants in Europe: in Romania, UK (eradicated) and Lithuania. Identity Name: Diaporthe vaccinii Shear Anamorph: Phomopsis vaccinii Shear Fig. 1 (A) Symptoms of Phomopsis/Diaporthe vaccinii on twigs of Taxonomic position: Fungi: Ascomycota: Diaporthales Vaccinium corymbosum. (B) Conidiomata on stem of blueberry. EPPO computer code: DIAPVA Phytosanitary categorization: EPPO A1 list no. 211, EU in two months, killing single twigs and often entire plants of a Annex designation: II/A1 susceptible cultivar. On stems, D. vaccinii causes a brown discoloration of the xylem below wilt symptoms. Conidiomata Detection appear on lesions on 1–2 year old twigs (Fig. 1B), and ascomata on 2–3 year old twigs. The fungus also infects leaves, buds, and Blueberries can be killed by D. vaccinii within a few months. fruits of cranberries (Fig. 2A, Fig. 3). Berries become brownish The first symptoms appear on the tips of non-woody shoots red, inflated and shiny.
    [Show full text]
  • Diaporthe Juglandicola Sp. Nov. (Diaporthales, Ascomycetes), Evidenced by Morphological Characters and Phylogenetic Analysis Ar
    Mycosphere 8(5): 817–826 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/5/3 Copyright © Guizhou Academy of Agricultural Sciences Diaporthe juglandicola sp. nov. (Diaporthales, Ascomycetes), evidenced by morphological characters and phylogenetic analysis Yang Q, Fan XL, Du Z and Tian CM* The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing 100083, China Yang Q, Fan XL, Du Z, Tian CM 2017 – Diaporthe juglandicola sp. nov. (Diaporthales, Ascomycetes), evidenced by morphological characters and phylogenetic analysis. Mycosphere 8(5), 817–826, Doi 10.5943/mycosphere/8/5/3 Abstract Diaporthe juglandicola sp. nov, collected from diseased branches of Juglans mandshurica in Beijing, China, is described and illustrated in this paper. Evidence for this new species is provided by its holomorphic morphology and phylogenetic analysis. Morphologically, the asexual morph produces hyaline, aseptate, ellipsoidal, alpha conidia (8.1–8.7 × 2.3–2.9 μm), while the sexual morph produces 8-spored, unitunicate, clavate to cylindric asci and fusoid, 0–1-septate ascospores. The phylogeny inferred from combined multi-locus sequences (CAL, HIS, ITS, TEF1-α, TUB) grouped the isolates of the new species into a distinct lineage. Key words – dieback – molecular phylogeny – new species – taxonomy Introduction The genus Diaporthe (syn. Phomopsis) was established by Nitschke (1870). Species of Diaporthe occur widely in natural ecosystems, comprising endophytes and saprobes, as well as plant pathogens (Uecker 1988, Rehner & Uecker 1994, Rossman & Palm-Hernández 2008, Udayanga et al. 2011, 2012a, b). According to Index Fungorum, there are 977 names in Diaporthe and 980 names in Phomopsis, although the relationships between the asexual and sexual taxa are mostly unclear.
    [Show full text]
  • Bean Pod Mottle Virus (BPMV) Is Wide­ Ies Each of a Large (L) and Small (S) Coat Reported (13,49)
    Loren J. Giesler University of Nebraska, Lincoln A Threat Bean pod Said A. Ghabrial to U.S. University of Kentucky, Lexington mottle Thomas E. Hunt Soybean University of Nebraska, Lincoln John H. Hill virus Production Iowa State University, Ames Bean pod mottle virus (BPMV) is wide­ ies each of a large (L) and small (S) coat reported (13,49). BPMV RNA-1 encodes spread in the major soybean-growing areas protein (CP) of 41 kDa and 22 kDa, re­ five mature proteins required for replica­ in the southern and southeastern United spectively. The S-CP occurs in two major tion (from 5' to 3': a protease cofactor States. A severe outbreak of BPMV in the size classes, the intact protein and a C- [32K], a putative helicase [58K], a viral north central and northern Great Plains terminus truncated version. As a conse­ genome-linked protein [VPg], a protease states is currently causing serious concern quence of this heterogeneity, BPMV viri­ [24K], and a putative RNA-dependent to soybean growers and to the soybean ons have two electrophoretic forms, a RNA polymerase, RdRp [87K]), whereas industry in this region (30). BPMV is effi­ slow- and a fast-migrating form, each con­ RNA-2 encodes a putative cell-to-cell ciently transmitted in nature, within and taining both M and B nucleoprotein com­ movement protein and the two coat pro­ between soybean fields, by several species ponents. Intact S-CP converts to the C­ teins (13,49). of leaf-feeding beetles. The deleterious terminus-truncated form with ageing of the effects of BPMV infection not only reduce virions and involves a specific, yet little Historical Perspective yield but also reduce seed quality, as seeds understood, proteolytic processing at the Zaumeyer and Thomas first described from infected plants may be discolored.
    [Show full text]
  • Phylogenetic Analysis and Development of Molecular Tool for Detection of Diaporthe Citri Causing Melanose Disease of Citrus
    plants Article Phylogenetic Analysis and Development of Molecular Tool for Detection of Diaporthe citri Causing Melanose Disease of Citrus Chingchai Chaisiri 1,2 , Xiang-Yu Liu 1,2, Yang Lin 1, Jiang-Bo Li 3, Bin Xiong 3 and Chao-Xi Luo 1,2,* 1 Key Lab of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan 430070, China; [email protected] (C.C.); [email protected] (X.-Y.L.); [email protected] (Y.L.) 2 Department of Plant Pathology, College of Plant Science & Technology, and Key Lab of Crop Disease Monitoring & Safety Control in Hubei Province, Huazhong Agricultural University, Wuhan 430070, China 3 Nanfeng Citrus Research Institute, Nanfeng 344500, China; [email protected] (J.-B.L.); [email protected] (B.X.) * Correspondence: [email protected] Received: 16 February 2020; Accepted: 27 February 2020; Published: 4 March 2020 Abstract: Melanose disease caused by Diaporthe citri is considered as one of the most important and destructive diseases of citrus worldwide. In this study, isolates from melanose samples were obtained and analyzed. Firstly, the internal transcribed spacer (ITS) sequences were used to measure Diaporthe-like boundary species. Then, a subset of thirty-eight representatives were selected to perform the phylogenetic analysis with combined sequences of ITS, beta-tubulin gene (TUB), translation elongation factor 1-α gene (TEF), calmodulin gene (CAL), and histone-3 gene (HIS). As a result, these representative isolates were identified belonging to D. citri, D. citriasiana, D. discoidispora, D. eres, D. sojae, and D. unshiuensis. Among these species, the D. citri was the predominant species that could be isolated at highest rate from different melanose diseased tissues.
    [Show full text]
  • Phomopsis Sp. As an Endophyte of Turnera Subulata L.: Isolation, Identification and Antimicrobial and Antioxidant Activity of Their Extracts
    Vol. 11(17), pp. 668-672, 7 May, 2017 DOI: 10.5897/AJMR2016.7975 Article Number: 541D4A064088 ISSN 1996-0808 African Journal of Microbiology Research Copyright © 2017 Author(s) retain the copyright of this article http://www.academicjournals.org/AJMR Full Length Research Paper Phomopsis sp. as an endophyte of Turnera subulata L.: Isolation, identification and antimicrobial and antioxidant activity of their extracts Giancarlo de Brito Lyra Santos1, Luiz Carlos Caetano2, Ariana Rafaela da Silva Nascimento2, Roberto Ramos Sobrinho2, Ricardo Manoel dos Santos Silva2, João Manoel da Silva3*, Tania Marta Carvalho dos Santos2 and Yamina Coentro Montaldo2 1Federal Institute of Alagoas, Maceió, Alagoas, Brazil 2Federal University of Alagoas, Chemical and Biochemical Department and Agricultural Sciences Center, Maceió, Alagoas, Brazil 3*Federal University of Sergipe, Department of Agronomy, São Cristóvão, Sergipe, Brazil, Received 25 February, 2016; Accepted 2 March, 2017 Turnera subulata L. is a plant that belongs to the Turneraceae family and is popularly known in Brazil as “Chanana”; it is used as an alternative medicine. Among all microorganisms, fungi are mostly associated with plants. The aim of this study is to isolate, identify and evaluate the antifungal and antioxidant activity of extracts of Phomopsis sp. isolated from T. subulata. From the leaf fragment obtained from T. subulata, the filamentous endophytic fungus Phomopsis sp was isolated. The fungal isolate had a higher growth in potato dextrose agar (PDA) and potato sucrose agar (PSA) culture medium, as well as in the presence of light. In the antagonism test of the endophytic Phomopsis sp. against human pathogens, there was inhibition zone against Escherichia coli, Staphylococcus aureus, Candida albicans, C.
    [Show full text]