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Molecular Phylogenetic Estimates of Evolutionary Affinities and the First
PRIMARY RESEARCH PAPER | Philippine Journal of Systematic Biology DOI 10.26757/pjsb2020b14002 Molecular phylogenetic estimates of evolutionary affinities and the first reports of phenotypic variation in two secretive, endemic reptiles from the Romblon Island Group, central Philippines Camila G. Meneses1,2,*, Cameron D. Siler3,4, Juan Carlos T. Gonzalez1,2, Perry L. Wood, Jr.5,6, and Rafe M. Brown6 Abstract We report on the first molecular estimates of phylogenetic relationships of Brachymeles dalawangdaliri (Scincidae) and Pseudogekko isapa (Gekkonidae), and present new data on phenotypic variation in these two poorly known taxa, endemic to the Romblon Island Group of the central Philippines. Because both species were recently described on the basis of few, relatively older, museum specimens collected in the early 1970s (when preservation of genetic material was not yet standard practice in biodiversity field inventories), neither taxon has ever been included in modern molecular phylogenetic analyses. Likewise, because the original type series for each species consisted of only a few specimens, biologists have been unable to assess standard morphological variation in either taxon, or statistically assess the importance of characters contributing to their diagnoses and identification. Here we ameliorate both historical shortfalls. First, our new genetic data allowed us to perform novel molecular phylogenetic analyses aimed at elucidating the evolutionary relationships of these lineages; secondly, with population level phenotypic data, from the first statistical sample collected for either species, and including adults of both sexes. We reaffirm the distinctiveness of both named taxa as valid species, amend their diagnoses to facilitate the recognition of both, distinguish them from congeners, and consider the biogeographic affinities of both lineages. -
Impacts of the Toba Eruption and Montane Forest Expansion on Diversification in Sumatran
bioRxiv preprint doi: https://doi.org/10.1101/843664; this version posted March 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Original Article Impacts of the Toba eruption and montane forest expansion on diversification in Sumatran parachuting frogs (Rhacophorus) Running head: Demography of Toba eruption Kyle A. O’Connell*1,2,3,4, Jamie R. Oaks5, Amir Hamidy6, Kyle J. Shaney7, Nia Kurniawan8, Eric N. Smith3, Matthew K. Fujita3 1Global Genome Initiative, National Museum of Natural History, Smithsonian Institute, Washington, DC, 20560, USA. 2Division of Amphibians and Reptiles, Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institute, Washington, DC, 20560, USA. 3Department of Biology and Amphibian and Reptile Diversity Research Center, The University of Texas at Arlington, Arlington, Texas 76019, USA 4Department of Biological Sciences, The George Washington University, Washington, DC, 20052 5Department of Biological Sciences and Museum of Natural History, Auburn University, Auburn, Alabama 36849 6Zoology Division, Museum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Sciences. Gd. Widyasatwaloka Jl. Raya Jakarta Bogor km 46 Cibinong, Bogor, West Java, Indonesia. 7Institute of Ecology, National Autonomous University of Mexico, Mexico City, Mexico. bioRxiv preprint doi: https://doi.org/10.1101/843664; this version posted March 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Open Access Research Article the Reptiles of Bega Watershed of the Province of Agusan Del Sur in the Philippines Abstract: 1. I
World Journal of Environmental Biosciences All Rights Reserved Euresian Publication © 2015 eISSN 2277- 8047 Available Online at: www.environmentaljournals.org Volume 4, Issue 2: 50-61 Open Access Research Article The Reptiles of Bega Watershed of the Province of Agusan Del Sur in the Philippines Marlon N. Balmores and Olga M. Nuñeza* Department of Biological Sciences, College of Science and Mathematics, Mindanao State University – Iligan Institute of Technology, Andres Bonifacio Avenue, Iligan City, 9200, Philippines *Corresponding author: [email protected] Abstract: Reptiles are important components of the food webs in most ecosystems where they fill a critical role both as predator and prey species. This study was conducted in Bega Watershed, Mabuhay, Prosperidad, Agusan del Sur to document species diversity, richness, and endemism of reptiles using a combination of cruising and pitfall trapping methods. Sixteen reptile species comprising 13 (81.25%) endemic species with one Mindanao endemic were recorded in Bega Watershed. A moderate species diversity (H’=2.514) with a more or less even distribution was also documented. Sampling Site 1 (Bega Falls) had the highest species richness. Bray-Curtis cluster analysis showed that site 1 (Bega Falls) and site 4 (Malipaga area) had the highest similarity index (40%) while Detrended Correspondence Analysis showed that site 1 is the most diverse among the four sampling sites. Results indicate the need for conservation action since despite low elevation, small land area, and relatively high disturbance, Bega Watershed still supports diverse assemblage of reptiles. Keywords: Conservation, Diversity, Ecosystem, Endemic, Predator 1. Introduction: threatened by burgeoning human population and The Philippine archipelago is one of the largest continued deforestation (Heaney and Oliver, aggregations of islands in the world thus, not 1997). -
Herpetological Assemblages in Tropical Forests of the Taguibo Watershed, Butuan City, Eastern Mindanao, Philippines
Philippine Journal of Science 3rd Draft: 17 pages 150 (S1): 415-431, Special Issue on Biodiversity Corrected: 05 Apr 2021 ISSN 0031 - 7683 04:20 PM Date Received: 04 Oct 2020 31_MS_20-266B Herpetological Assemblages in Tropical Forests of the Taguibo Watershed, Butuan City, Eastern Mindanao, Philippines Marites B. Sanguila1,2*, Jeszianlenn L. Plaza1,2, Marjorie Y. Mahinay2, Roger C. Edma Jr.2, and Rafe M. Brown3 1Biodiversity Informatics and Research Center, Father Saturnino Urios University San Francisco Street, Butuan City, Agusan del Norte 8600 Philippines 2Natural Sciences and Mathematics Division, Arts and Sciences Program Father Saturnino Urios University, San Francisco Street Butuan City, Agusan del Norte 8600 Philippines 3Biodiversity Institute and Department of Ecology and Evolutionary Biology 1345 Jayhawk Blvd., University of Kansas, Lawrence, KS 66045 USA Tropical watershed ecosystems support heterogeneous habitats and diverse non-human species assemblages, together providing ecosystem services to humans. Amphibians and reptiles are recognized as sensitive indicators of ecosystem “health,” related to beneficial services (provisional, regulating, cultural, structural, functional) human societies receive from terrestrial watersheds. The Taguibo Watershed supplies fresh drinking water to Butuan City in the Caraga Region of northeast Mindanao Island. However, very little is known about the herpetofauna of the area. Here, we synthesize biodiversity data from historical (1971, 1979) and recent (2013, 2017) herpetological surveys from the region. We utilize specimen-associated occurrence records and natural history information to produce a species inventory, analyze their habitat utilization, and characterize diversity metrics to describe herpetological communities of the watershed – resulting in 44 species (27 new records). A number of historically-documented species persist, having partitioned riparian and terrestrial habitat types in dipterocarp and secondary-growth forests of Taguibo. -
Ecological Assessments in the B+WISER Sites
Ecological Assessments in the B+WISER Sites (Northern Sierra Madre Natural Park, Upper Marikina-Kaliwa Forest Reserve, Bago River Watershed and Forest Reserve, Naujan Lake National Park and Subwatersheds, Mt. Kitanglad Range Natural Park and Mt. Apo Natural Park) Philippines Biodiversity & Watersheds Improved for Stronger Economy & Ecosystem Resilience (B+WISER) 23 March 2015 This publication was produced for review by the United States Agency for International Development. It was prepared by Chemonics International Inc. The Biodiversity and Watersheds Improved for Stronger Economy and Ecosystem Resilience Program is funded by the USAID, Contract No. AID-492-C-13-00002 and implemented by Chemonics International in association with: Fauna and Flora International (FFI) Haribon Foundation World Agroforestry Center (ICRAF) The author’s views expressed in this publication do not necessarily reflect the views of the United States Agency for International Development or the United States Government. Ecological Assessments in the B+WISER Sites Philippines Biodiversity and Watersheds Improved for Stronger Economy and Ecosystem Resilience (B+WISER) Program Implemented with: Department of Environment and Natural Resources Other National Government Agencies Local Government Units and Agencies Supported by: United States Agency for International Development Contract No.: AID-492-C-13-00002 Managed by: Chemonics International Inc. in partnership with Fauna and Flora International (FFI) Haribon Foundation World Agroforestry Center (ICRAF) 23 March -
Genus Lycodon)
Zoologica Scripta Multilocus phylogeny reveals unexpected diversification patterns in Asian wolf snakes (genus Lycodon) CAMERON D. SILER,CARL H. OLIVEROS,ANSSI SANTANEN &RAFE M. BROWN Submitted: 6 September 2012 Siler, C. D., Oliveros, C. H., Santanen, A., Brown, R. M. (2013). Multilocus phylogeny Accepted: 8 December 2012 reveals unexpected diversification patterns in Asian wolf snakes (genus Lycodon). —Zoologica doi:10.1111/zsc.12007 Scripta, 42, 262–277. The diverse group of Asian wolf snakes of the genus Lycodon represents one of many poorly understood radiations of advanced snakes in the superfamily Colubroidea. Outside of three species having previously been represented in higher-level phylogenetic analyses, nothing is known of the relationships among species in this unique, moderately diverse, group. The genus occurs widely from central to Southeast Asia, and contains both widespread species to forms that are endemic to small islands. One-third of the diversity is found in the Philippine archipelago. Both morphological similarity and highly variable diagnostic characters have contributed to confusion over species-level diversity. Additionally, the placement of the genus among genera in the subfamily Colubrinae remains uncertain, although previous studies have supported a close relationship with the genus Dinodon. In this study, we provide the first estimate of phylogenetic relationships within the genus Lycodon using a new multi- locus data set. We provide statistical tests of monophyly based on biogeographic, morpho- logical and taxonomic hypotheses. With few exceptions, we are able to reject many of these hypotheses, indicating a need for taxonomic revisions and a reconsideration of the group's biogeography. Mapping of color patterns on our preferred phylogenetic tree suggests that banded and blotched types have evolved on multiple occasions in the history of the genus, whereas the solid-color (and possibly speckled) morphotype color patterns evolved only once. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
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HAMADRYAD Vol. 27. No. 2. August, 2003 Date of issue: 31 August, 2003 ISSN 0972-205X CONTENTS T. -M. LEONG,L.L.GRISMER &MUMPUNI. Preliminary checklists of the herpetofauna of the Anambas and Natuna Islands (South China Sea) ..................................................165–174 T.-M. LEONG & C-F. LIM. The tadpole of Rana miopus Boulenger, 1918 from Peninsular Malaysia ...............175–178 N. D. RATHNAYAKE,N.D.HERATH,K.K.HEWAMATHES &S.JAYALATH. The thermal behaviour, diurnal activity pattern and body temperature of Varanus salvator in central Sri Lanka .........................179–184 B. TRIPATHY,B.PANDAV &R.C.PANIGRAHY. Hatching success and orientation in Lepidochelys olivacea (Eschscholtz, 1829) at Rushikulya Rookery, Orissa, India ......................................185–192 L. QUYET &T.ZIEGLER. First record of the Chinese crocodile lizard from outside of China: report on a population of Shinisaurus crocodilurus Ahl, 1930 from north-eastern Vietnam ..................193–199 O. S. G. PAUWELS,V.MAMONEKENE,P.DUMONT,W.R.BRANCH,M.BURGER &S.LAVOUÉ. Diet records for Crocodylus cataphractus (Reptilia: Crocodylidae) at Lake Divangui, Ogooué-Maritime Province, south-western Gabon......................................................200–204 A. M. BAUER. On the status of the name Oligodon taeniolatus (Jerdon, 1853) and its long-ignored senior synonym and secondary homonym, Oligodon taeniolatus (Daudin, 1803) ........................205–213 W. P. MCCORD,O.S.G.PAUWELS,R.BOUR,F.CHÉROT,J.IVERSON,P.C.H.PRITCHARD,K.THIRAKHUPT, W. KITIMASAK &T.BUNDHITWONGRUT. Chitra burmanica sensu Jaruthanin, 2002 (Testudines: Trionychidae): an unavailable name ............................................................214–216 V. GIRI,A.M.BAUER &N.CHATURVEDI. Notes on the distribution, natural history and variation of Hemidactylus giganteus Stoliczka, 1871 ................................................217–221 V. WALLACH. -
First Record of Rhacophorus Verrucopus Huang, 1983 From
Herpetozoa 33: 207–211 (2020) DOI 10.3897/herpetozoa.33.e60214 First record of Rhacophorus verrucopus Huang, 1983 from Myanmar Shuo Liu1, Ye Htet Lwin2, Ruichang Quan2,3, Song Li1 1 Kunming Natural History Museum of Zoology, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China 2 Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences, Yezin, Nay Pyi Taw 05282, Myanmar 3 Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303, China http://zoobank.org/6A7AD27F-91CA-4E9F-AA9C-0B5AB864021B Corresponding author: Song Li ([email protected]) Academic editor: G.Gollmann ♦ Received 31 October 2020 ♦ Accepted 19 November 2020 ♦ Published 1 December 2020 Abstract We report the first country record of Rhacophorus verrucopus Huang, 1983 from Myanmar, based on one specimen collected from Htamanthi Wildlife Sanctuary, Sagaing Division. Morphologically, the specimen shows good agreement with the original descrip- tion of R. verrucopus and phylogenetically, it is clustered with the specimen of R. verrucopus from Medog, Tibet, China with strong support. This is also the first record of R. verrucopus from outside of China. Key Words 16S rRNA, Htamanthi Wildlife Sanctuary, new record, tree frog Introduction sity Research Institute, Chinese Academy of Science have found many new species and new records of animals and Rhacophorus Kuhl & van Hasselt, 1822 occurs in the trop- plants in northern Myanmar (Li and Quan 2017). During ical and temperate zones of East, South and Southeast Asia our field survey in northern Myanmar in 2019, a specimen and, recently, was partitioned into three genera including of Rhacophorus with a small and elongated body and dis- Rhacophorus, Leptomantis Peters, 1867 and Zhangixalus Li, tinct tarsal projections was collected. -
Genus Sphenomorphus): Three New Species from the Mountains of Luzon and Clarification of the Status of the Poorly Knowns
Scientific Papers Natural History Museum The University of Kansas 13 october 2010 number 42:1–27 Species boundaries in Philippine montane forest skinks (Genus Sphenomorphus): three new species from the mountains of Luzon and clarification of the status of the poorly knownS. beyeri, S. knollmanae, and S. laterimaculatus By RAFe.m..BROwN1,2,6,.CHARleS.w..lINkem1,.ARvIN.C..DIeSmOS2,.DANIlO.S..BAleTe3,.melIzAR.v..DUyA4,. AND.JOHN.w..FeRNeR5 1 Natural History Museum, Biodiversity Institute, and Department of Ecology and Evolutionary Biology, The University of Kansas, 1345 Jayhawk Boulevard, Lawrence, KS 66045-7561, U.S.A.; E-mail: (RMB) [email protected]; (CWL) [email protected] 2 Herpetology Section, Zoology Division, National Museum of the Philippines, Executive House, P. Burgos Street, Rizal Park, Metro Manila, Philippines; E-mail: (ACD) [email protected] 3 Field Museum of Natural History, 1400 S Lake Shore Drive, Chicago, IL 60605; E-mail: [email protected] 4 Conservation International Philippines, No. 6 Maalalahanin Street, Teachers Village, Diliman 1101 Quezon City; Philippines. Cur- rent Address: 188 Francisco St., Guinhawa Subd., Malolos, Bulacan 3000 Philippines; E-mail: [email protected] 5 Department of Biology, Thomas More College, Crestview Hills, Kentucky, 41017, U.S.A.; E-mail: [email protected] 6 Corresponding author Contents ABSTRACT...............................................................................................................2 INTRODUCTION....................................................................................................2 -
Herpetological Assemblages in Tropical Forests of the Taguibo Watershed, Butuan City, Eastern Mindanao, Philippines
Philippine Journal of Science 150 (S1): 415-431, Special Issue on Biodiversity ISSN 0031 - 7683 Date Received: 04 Oct 2020 Herpetological Assemblages in Tropical Forests of the Taguibo Watershed, Butuan City, Eastern Mindanao, Philippines Marites B. Sanguila1,2*, Jeszianlenn L. Plaza1,2, Marjorie Y. Mahinay2, Roger C. Edma Jr.2, and Rafe M. Brown3 1Biodiversity Informatics and Research Center, Father Saturnino Urios University San Francisco Street, Butuan City, Agusan del Norte 8600 Philippines 2Natural Sciences and Mathematics Division, Arts and Sciences Program Father Saturnino Urios University, San Francisco Street Butuan City, Agusan del Norte 8600 Philippines 3Biodiversity Institute and Department of Ecology and Evolutionary Biology 1345 Jayhawk Blvd., University of Kansas, Lawrence, KS 66045 USA Tropical watershed ecosystems support heterogeneous habitats and diverse non-human species assemblages, together providing ecosystem services to humans. Amphibians and reptiles are recognized as sensitive indicators of ecosystem “health,” related to beneficial services (provisional, regulating, cultural, structural, functional) human societies receive from terrestrial watersheds. The Taguibo Watershed supplies fresh drinking water to Butuan City in the Caraga Region of northeast Mindanao Island. However, very little is known about the herpetofauna of the area. Here, we synthesize biodiversity data from historical (1971, 1979) and recent (2013, 2017) herpetological surveys from the region. We utilize specimen-associated occurrence records and natural history information to produce a species inventory, analyze their habitat utilization, and characterize diversity metrics to describe herpetological communities of the watershed – resulting in 44 species (27 new records). A number of historically-documented species persist, having partitioned riparian and terrestrial habitat types in dipterocarp and secondary-growth forests of Taguibo. -
2019 Journal Publications
2019 Journal Publications January Ayala, C. Ramos, A. Merlo, Á. Zambrano, L. (2019). Microhabitat selection of axolotls, Ambystoma mexicanum , in artificial and natural aquatic systems. Hydrobiologia, 828(1), pp.11-20. https://link.springer.com/article/10.1007/s10750-018-3792-8 Bélouard, N. Petit, E. J. Huteau, D. Oger, A. Paillisson, J-M. (2019). Fins are relevant non-lethal surrogates for muscle to measure stable isotopes in amphibians. Knowledge & Management of Aquatic Ecosystems, 420. https://www.kmae-journal.org/articles/kmae/pdf/2019/01/kmae180087.pdf Bignotte-Giró, I. Fong G, A. López-Iborra, G. M. (2019). Acoustic niche partitioning in five Cuban frogs of the genus Eleutherodactylus. Amphibia Reptilia,(40)1. https://brill.com/abstract/journals/amre/40/1/article-p1_1.xml Boissinot, A. Besnard, A. Lourdais, O. (2019). Amphibian diversity in farmlands: Combined influences of breeding-site and landscape attributes in western France. Agriculture, Ecosystems & Environment 269, pp.51-61. https://www.sciencedirect.com/science/article/pii/S0167880918303979 Borges, R. E. de Souza Santos, L. R. Assis, R. A. Benvindo-Souza, M. (2019). Monitoring the morphological integrity of neotropical anurans. Environmental Science and Pollution Research, 26(3), pp. 2623–2634. https://link.springer.com/article/10.1007/s11356-018-3779-z Borteiro, C. Kolenc, F. Verdes, J. M. Debat, C. M. Ubilla, M. (2019). Sensitivity of histology for the detection of the amphibian chytrid fungus Batrachochytrium dendrobatidis. Journal of Veterinary Diagnostic Investigation, 01/19/2019, p.104063871881611 https://journals.sagepub.com/doi/abs/10.1177/1040638718816116 Bozzuto, C. Canessa, S. (2019). Impact of seasonal cycles on host-pathogen dynamics and disease mitigation for Batrachochytrium salamandrivorans.