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Towards an Objective Evaluation of EEG/MEG Source Estimation Methods: the Linear Tool Kit
bioRxiv preprint doi: https://doi.org/10.1101/672956; this version posted June 18, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Towards an Objective Evaluation of EEG/MEG Source Estimation Methods: The Linear Tool Kit Olaf Hauk1, Matti Stenroos2, Matthias Treder3 1 MRC Cognition and Brain Sciences Unit, University of Cambridge, UK 2 Department of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland 3 School of Computer Sciences and Informatics, Cardiff University, Cardiff, UK Corresponding author: Olaf Hauk MRC Cognition and Brain Sciences Unit University of Cambridge 15 Chaucer Road Cambridge CB2 7EF [email protected] Key words: inverse problem, point-spread function, cross-talk function, resolution matrix, minimum-norm estimation, spatial filter, beamforming, localization error, spatial dispersion, relative amplitude 1 bioRxiv preprint doi: https://doi.org/10.1101/672956; this version posted June 18, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Abstract The question “What is the spatial resolution of EEG/MEG?” can only be answered with many ifs and buts, as the answer depends on a large number of parameters. Here, we describe a framework for resolution analysis of EEG/MEG source estimation, focusing on linear methods. -
PET-CT Image Registration in the Chest Using Free-Form Deformations David Mattes, David R
120 IEEE TRANSACTIONS ON MEDICAL IMAGING, VOL. 22, NO. 1, JANUARY 2003 PET-CT Image Registration in the Chest Using Free-form Deformations David Mattes, David R. Haynor, Hubert Vesselle, Thomas K. Lewellen, and William Eubank Abstract—We have implemented and validated an algorithm tered. The idea can still be used that, if a candidate registration for three-dimensional positron emission tomography transmis- matches a set of similar features in the first image to a set of sion-to-computed tomography registration in the chest, using features in the second image that are also mutually similar, it is mutual information as a similarity criterion. Inherent differences in the two imaging protocols produce significant nonrigid motion probably correct [23]. For example, according to the principle of between the two acquisitions. A rigid body deformation combined mutual information, homogeneous regions of the first image set with localized cubic B-splines is used to capture this motion. The should generally map into homogeneous regions in the second deformation is defined on a regular grid and is parameterized set [1], [2]. The utility of information theoretic measures arises by potentially several thousand coefficients. Together with a from the fact that they make no assumptions about the actual spline-based continuous representation of images and Parzen histogram estimates, our deformation model allows closed-form intensity values in the images, but instead measure statistical expressions for the criterion and its gradient. A limited-memory relationships between the two images [24]. Rather than mea- quasi-Newton optimization algorithm is used in a hierarchical sure correlation of intensity values in corresponding regions of multiresolution framework to automatically align the images. -
Unsupervised 3D End-To-End Medical Image Registration with Volume Tweening Network
1 Unsupervised 3D End-to-End Medical Image Registration with Volume Tweening Network Shengyu Zhaoy, Tingfung Lauy, Ji Luoy, Eric I-Chao Chang, Yan Xu∗ Abstract—3D medical image registration is of great clinical im- portance. However, supervised learning methods require a large amount of accurately annotated corresponding control points (or morphing), which are very difficult to obtain. Unsupervised learning methods ease the burden of manual annotation by exploiting unlabeled data without supervision. In this paper, we propose a new unsupervised learning method using convolu- (a) fixed (b) moving (c) deformation (d) warped tional neural networks under an end-to-end framework, Volume Figure 1: Illustration of 3D medical image registration. Given a fixed image (a) and a Tweening Network (VTN), for 3D medical image registration. moving image (b), a deformation field (c) indicates the displacement of each voxel in the fixed image to the moving image (represented by a grid skewed according to the field). We propose three innovative technical components: (1) An An image (d) similar to the fixed one can be produced by warping the moving image end-to-end cascading scheme that resolves large displacement; with the flow. The images are rendered by mapping grayscale to white with transparency (2) An efficient integration of affine registration network; and (the more intense, the more opaque) and dimetrically projecting the volume. (3) An additional invertibility loss that encourages backward consistency. Experiments demonstrate that our algorithm is 880x faster (or 3.3x faster without GPU acceleration) than [4], [5]. Most of them define a hypothesis space of possible traditional optimization-based methods and achieves state-of-the- art performance in medical image registration. -
Human Cortical Oscillations: a Neuromagnetic View Through the Skull
R EVIEW R. Hari and R. Salmelin – Human cortical rhythms VA -IN S I N V Human cortical oscillations: a O E N I neuromagnetic view through the skull M G AG I N Riitta Hari and Riitta Salmelin The mammalian cerebral cortex generates a variety of rhythmic oscillations, detectable directly from the cortex or the scalp. Recent non-invasive recordings from intact humans, by means of neuromagnetometers with large sensor arrays, have shown that several regions of the healthy human cortex have their own intrinsic rhythms, typically 8–40 Hz in frequency, with modality- and frequency-specific reactivity. The conventional hypotheses about the functional significance of brain rhythms extend from epiphenomena to perceptual binding and object segmentation. Recent data indicate that some cortical rhythms can be related to periodic activity of peripheral sensor and effector organs. Trends Neurosci. (1997) 20, 44–49 EURONES IN THE HUMAN BRAIN, especially in signals can be identified easily. By contrast, MEG (and Nthalamic nuclei and in the cerebral cortex, ex- EEG) sensors pick up signals from extensive brain hibit intrinsic oscillations1–3, which probably form the regions, which might be even several centimetres basis for macroscopic rhythms, detectable with electro- away from the sensor. Therefore the sites of active encephalography (EEG) and magnetoencephalography neuronal populations have to be deduced from the (MEG). Analysis of cortical rhythms forms an essential measured signal distribution. Although this ‘inverse part of clinical EEG evaluation, which relies on corre- problem’ does not have a unique solution in the gen- lations between the signal phenomenology and brain eral case6,9, modelling the generators of MEG signals as disorders. -
Brain Activity Relating to the Contingent Negative Variation: an Fmri Investigation
www.elsevier.com/locate/ynimg NeuroImage 21 (2004) 1232–1241 Brain activity relating to the contingent negative variation: an fMRI investigation Y. Nagai,a,* H.D. Critchley,b E. Featherstone,b P.B.C. Fenwick,c M.R. Trimble,a and R.J. Dolanb a Institute of Neurology, Department of Clinical and Experimental Epilepsy, London WC1N 3BG, UK b Wellcome Department of Imaging Neuroscience, Institute of Neurology, UCL, London WC1N 3BG, UK c Institute of Psychiatry, KCL, London SE5 8AF GB, UK Received 6 May 2003; revised 30 October 2003; accepted 31 October 2003 The contingent negative variation (CNV) is a long-latency electro- and S2) at the vertex, has been termed the ‘‘expectancy wave’’ encephalography (EEG) surface negative potential with cognitive and (Walter et al., 1964). A more general model of the CNVencapsulates motor components, observed during response anticipation. CNV is an a concept of cortical arousal related to anticipatory attention, index of cortical arousal during orienting and attention, yet its preparation, motivation, and information processing (Tecce, 1972). functional neuroanatomical basis is poorly understood. We used Neurophysiological studies indicate that cortical surface-nega- functional magnetic resonance imaging (fMRI) with simultaneous EEG and recording of galvanic skin response (GSR) to investigate tive potentials, such as the CNV, result from depolarization of CNV-related central neural activity and its relationship to peripheral apical dendrites of cortical pyramidal cells by thalamic afferents autonomic arousal. In a group analysis, blood oxygenation level and reflect excitation over an extended cortical area (Birbaumer et dependent (BOLD) activity during the period of CNV generation was al., 1990). -
Electroencephalographic Correlates of Temporal Bayesian Belief Updating and Surprise
Electroencephalographic Correlates of Temporal Bayesian Belief Updating and Surprise a,b,* a b,c d c,e Antonino Visalli , Mariagrazia Capizzi , Ettore Ambrosini , Bruno Kopp , Antonino Vallesi a Department of Neuroscience, University of Padova, 35128 Padova, Italy b Department of General Psychology, University of Padova, 35131 Padova, Italy c Department of Neuroscience & Padova Neuroscience Center, University of Padova, 35131 Padova, Italy d Department of Neurology, Hannover Medical School, 30625 Hannover, Germany e Brain Imaging and Neural Dynamics Research Group, IRCCS San Camillo Hospital, 30126 Venice, Italy *Address for correspondence: Antonino Visalli Department of Neuroscience, University of Padova Via Giustiniani 5, 35128 Padova, Italy Phone number: (+39) 049 8214450 Email: [email protected] 1 Abstract The brain predicts the timing of forthcoming events to optimize responses to them. Temporal predictions have been formalized in terms of the hazard function, which integrates prior beliefs on the likely timing of stimulus occurrence with information conveyed by the passage of time. However, how the human brain updates prior temporal beliefs is still elusive. Here we investigated electroencephalographic (EEG) signatures associated with Bayes-optimal updating of temporal beliefs. Given that updating usually occurs in response to surprising events, we sought to disentangle EEG correlates of updating from those associated with surprise. Twenty-siX participants performed a temporal foreperiod task, which comprised a subset of surprising events not eliciting updating. EEG data were analyzed through a regression-based massive approach in the electrode and source space. Distinct late positive, centro-parietally distributed, event-related potentials (ERPs) were associated with surprise and belief updating in the electrode space. -
Physiological Studies of the Vestibulosympathetic Reflex in Humans
! ! ! Physiological Studies of the Vestibulosympathetic Reflex in Humans Elie Hammam, BMedSci (Hons I) School of Medicine University of Western Sydney Supervisor Prof. Vaughan Macefield Co-Supervisor Prof. Kenny Kwok A thesis submitted to the University of Western Sydney in candidature for the award of Doctor of Philosophy, 2014 ! ! "! ! ! ! STATEMENT OF AUTHENTICATION I, Elie Hammam, declare that this thesis is based entirely on my own independent work, except for sections which were performed in collaboration with colleagues as acknowledged in the study and resulted in the publication of the journal articles shown below. To the best of my knowledge this project does not contain material previously submitted in fulfillment of the guidelines and requirements for the award of Doctor of Philosophy in the School of Medicine, University of Western Sydney, and has not been submitted for qualifications at any other academic institution. Elie Hammam ! ! ! ! #! ! ! ! ACKNOWLEDGEMENTS Undertaking the highest scholarly exercise a University offers has certainly been a long, arduous, but nevertheless a fulfilling journey. Now completed, reflection has allowed me to appreciate that what I have achieved is merely a credit to my efforts. I am deeply indebted to the guidance of my mentors, encouragements from friends and support from family. First and foremost, I wish to acknowledge my stellar supervisor Vaughan Macefield who has never shied from supporting me throughout my candidature. Vaughan, from the very beginning you believed in me and never ceased to impart your knowledge, skills and wisdom. You have ensured all throughout my candidature that I get a holistic development in preparation to a life with academic excellence. -
A Novel Diagnostic Tool for Concussion
Neurosurg Focus 33 (6):E9, 2012 Magnetoencephalographic virtual recording: a novel diagnostic tool for concussion MATTHEW TORMENTI, M.D.,1 DONALD KRIEGER, PH.D.,1 AVA M. PUCCIO, R.N., PH.D.,1 MALCOLM R. MCNEIL, PH.D.,2 WALTER SCHNEIDER, PH.D.,3 AND DAVID O. OKONKWO, M.D., PH.D.1 Departments of 1Neurological Surgery, 2Communication Science and Disorders, and 3Psychology, University of Pittsburgh, Pennsylvania Object. Heightened recognition of the prevalence and significance of head injury in sports and in combat veter- ans has brought increased attention to the physiological and behavioral consequences of concussion. Current clinical practice is in part dependent on patient self-report as the basis for medical decisions and treatment. Magnetoen- cephalography (MEG) shows promise in the assessment of the pathophysiological derangements in concussion. The authors have developed a novel MEG-based neuroimaging strategy to provide objective, noninvasive, diagnostic information in neurological disorders. In the current study the authors demonstrate a novel task protocol and then assess MEG virtual recordings obtained during task performance as a diagnostic tool for concussion. Methods. Ten individuals (5 control volunteers and 5 patients with a history of concussion) were enrolled in this pilot study. All participants underwent an MEG evaluation during performance of a language/spatial task. Each individual produced 960 responses to 320 sentence stimuli; 0.3 sec of MEG data from each word presentation and each response were analyzed: the data from each participant were classified using a rule constructed from the data obtained from the other 9 participants. Results. Analysis of response times showed significant differences (p < 10-4) between concussed and normal groups, demonstrating the sensitivity of the task. -
Image Registration in Medical Imaging
2/2/2012 Medical Imaging Analysis Image Registration in Medical Imaging y Developing mathematical algorihms to extract and relate information from medical images y Two related aspects of research BI260 { Image Registration VALERIE CARDENAS NICOLSON, PH.D Ù Fin ding spatia l/tempora l correspondences between image data and/or models ACKNOWLEDGEMENTS: { Image segmentation Ù Extracting/detecting specific features of interest from image data COLIN STUDHOLME, PH.D. LUCAS AND KANADE, PROC IMAGE UNDERSTANDING WORKSHOP, 1981 Medical Imaging Regsitration: Overview Registration y What is registration? { Definition “the determination of a one-to-one mapping between the coordinates in one space and those in { Classifications: Geometry, Transformations, Measures another, such that points in the two spaces that y Motivation for work correspond to the same anatomical point are mapped to each other.” { Where is image regiistrat ion used in medic ine and biome dica l research? Calvin Maurer ‘93 y Measures of image alignment { Landmark/feature based methods { Voxel-based methods Ù Image intensity difference and correlation Ù Multi-modality measures 1 2/2/2012 Image Registration Key Applications I: Change detection y Look for differences in the same type of images taken at different times, e.g.: { Mapping pre and post contrast agent “Establishing correspondence, Ù Digital subtraction angiography (DSA) between features Ù MRI with gadolinium tracer in sets of images, and { Mapping structural changes using a transformation model to Ù Different stages in tumor -
Traffic Sign Recognition Evaluation for Senior Adults Using EEG Signals
sensors Article Traffic Sign Recognition Evaluation for Senior Adults Using EEG Signals Dong-Woo Koh 1, Jin-Kook Kwon 2 and Sang-Goog Lee 1,* 1 Department of Media Engineering, Catholic University of Korea, 43 Jibong-ro, Bucheon-si 14662, Korea; [email protected] 2 CookingMind Cop. 23 Seocho-daero 74-gil, Seocho-gu, Seoul 06621, Korea; [email protected] * Correspondence: [email protected]; Tel.: +82-2-2164-4909 Abstract: Elderly people are not likely to recognize road signs due to low cognitive ability and presbyopia. In our study, three shapes of traffic symbols (circles, squares, and triangles) which are most commonly used in road driving were used to evaluate the elderly drivers’ recognition. When traffic signs are randomly shown in HUD (head-up display), subjects compare them with the symbol displayed outside of the vehicle. In this test, we conducted a Go/Nogo test and determined the differences in ERP (event-related potential) data between correct and incorrect answers of EEG signals. As a result, the wrong answer rate for the elderly was 1.5 times higher than for the youths. All generation groups had a delay of 20–30 ms of P300 with incorrect answers. In order to achieve clearer differentiation, ERP data were modeled with unsupervised machine learning and supervised deep learning. The young group’s correct/incorrect data were classified well using unsupervised machine learning with no pre-processing, but the elderly group’s data were not. On the other hand, the elderly group’s data were classified with a high accuracy of 75% using supervised deep learning with simple signal processing. -
Electroencephalography (EEG) Technology Applications and Available Devices
applied sciences Review Electroencephalography (EEG) Technology Applications and Available Devices Mahsa Soufineyestani , Dale Dowling and Arshia Khan * Department of Computer Science, University of Minnesota Duluth, Duluth, MN 55812, USA; soufi[email protected] (M.S.); [email protected] (D.D.) * Correspondence: [email protected] Received: 18 September 2020; Accepted: 21 October 2020; Published: 23 October 2020 Abstract: The electroencephalography (EEG) sensor has become a prominent sensor in the study of brain activity. Its applications extend from research studies to medical applications. This review paper explores various types of EEG sensors and their applications. This paper is for an audience that comprises engineers, scientists and clinicians who are interested in learning more about the EEG sensors, the various types, their applications and which EEG sensor would suit a specific task. The paper also lists the details of each of the sensors currently available in the market, their technical specs, battery life, and where they have been used and what their limitations are. Keywords: EEG; EEG headset; EEG Cap 1. Introduction An electroencephalography (EEG) sensor is an electronic device that can measure electrical signals of the brain. EEG sensors typically measure the varying electrical signals created by the activity of large groups of neurons near the surface of the brain over a period of time. They work by measuring the small fluctuations in electrical current between the skin and the sensor electrode, amplifying the electrical current, and performing any filtering, such as bandpass filtering [1]. Innovations in the field of medicine began in the early 1900s, prior to which there was little innovation due to the uncollaborative nature of the field of medicine. -
Assessment of Traumatic Nerve Injuries
American Association of Neuromuscular & Electrodiagnostic Medicine AANEM ASSESSMENT OF TRAUMATIC NERVE INJURIES Lawrence R. Robinson, MD Jeffrey G. Jarvik, MD, MPH David G. Kline, MD 2005 AANEM COURSE G AANEM 52nd Annual Scientific Meeting Monterey, California Assessment of Traumatic Nerve Injuries Lawrence R. Robinson, MD Jeffrey G. Jarvik, MD, MPH David G. Kline, MD 2005 COURSE G AANEM 52nd Annual Scientific Meeting Monterey, California AANEM Copyright © September 2005 American Association of Neuromuscular & Electrodiagnostic Medicine 421 First Avenue SW, Suite 300 East Rochester, MN 55902 PRINTED BY JOHNSON PRINTING COMPANY, INC. ii Assessment of Traumatic Nerve Injuries Faculty Lawrence R. Robinson, MD David G. Kline, MD Professor Boyd Professor and Head Department of Rehabilitation Medicine Department of Neurosurgery University of Washington Louisiana State University Medical Center Seattle, Washington New Orleans, Louisiana Dr. Robinson attended Baylor College of Medicine and completed his res- Dr. Kline is currently a Boyd Professor and Head of the Department of idency training in rehabilitation medicine at the Rehabilitation Institute of Neurosurgery at Louisiana State University (LSU) Medical Center in New Chicago. He now serves as professor and chair of the Department of Orleans. He earned his medical degree from the University of Rehabilitation Medicine at the University of Washington and is the Pennsylvania, then performed his internship at the University of Michigan. Director of the Harborview Medical Center Electrodiagnostic Laboratory. He performed residencies at the University of Michigan and Walter Reed He is also currently Vice Dean for Clinical Affairs at the University of General Hospital and Institute of Research. Dr. Kline has served on sever- Washington.