Efficient Distributed Memory Management with RDMA And
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Scalable and Distributed Deep Learning (DL): Co-Design MPI Runtimes and DL Frameworks
Scalable and Distributed Deep Learning (DL): Co-Design MPI Runtimes and DL Frameworks OSU Booth Talk (SC ’19) Ammar Ahmad Awan [email protected] Network Based Computing Laboratory Dept. of Computer Science and Engineering The Ohio State University Agenda • Introduction – Deep Learning Trends – CPUs and GPUs for Deep Learning – Message Passing Interface (MPI) • Research Challenges: Exploiting HPC for Deep Learning • Proposed Solutions • Conclusion Network Based Computing Laboratory OSU Booth - SC ‘18 High-Performance Deep Learning 2 Understanding the Deep Learning Resurgence • Deep Learning (DL) is a sub-set of Machine Learning (ML) – Perhaps, the most revolutionary subset! Deep Machine – Feature extraction vs. hand-crafted Learning Learning features AI Examples: • Deep Learning Examples: Logistic Regression – A renewed interest and a lot of hype! MLPs, DNNs, – Key success: Deep Neural Networks (DNNs) – Everything was there since the late 80s except the “computability of DNNs” Adopted from: http://www.deeplearningbook.org/contents/intro.html Network Based Computing Laboratory OSU Booth - SC ‘18 High-Performance Deep Learning 3 AlexNet Deep Learning in the Many-core Era 10000 8000 • Modern and efficient hardware enabled 6000 – Computability of DNNs – impossible in the 4000 ~500X in 5 years 2000 past! Minutesto Train – GPUs – at the core of DNN training 0 2 GTX 580 DGX-2 – CPUs – catching up fast • Availability of Datasets – MNIST, CIFAR10, ImageNet, and more… • Excellent Accuracy for many application areas – Vision, Machine Translation, and -
Parallel Programming
Parallel Programming Parallel Programming Parallel Computing Hardware Shared memory: multiple cpus are attached to the BUS all processors share the same primary memory the same memory address on different CPU’s refer to the same memory location CPU-to-memory connection becomes a bottleneck: shared memory computers cannot scale very well Parallel Programming Parallel Computing Hardware Distributed memory: each processor has its own private memory computational tasks can only operate on local data infinite available memory through adding nodes requires more difficult programming Parallel Programming OpenMP versus MPI OpenMP (Open Multi-Processing): easy to use; loop-level parallelism non-loop-level parallelism is more difficult limited to shared memory computers cannot handle very large problems MPI(Message Passing Interface): require low-level programming; more difficult programming scalable cost/size can handle very large problems Parallel Programming MPI Distributed memory: Each processor can access only the instructions/data stored in its own memory. The machine has an interconnection network that supports passing messages between processors. A user specifies a number of concurrent processes when program begins. Every process executes the same program, though theflow of execution may depend on the processors unique ID number (e.g. “if (my id == 0) then ”). ··· Each process performs computations on its local variables, then communicates with other processes (repeat), to eventually achieve the computed result. In this model, processors pass messages both to send/receive information, and to synchronize with one another. Parallel Programming Introduction to MPI Communicators and Groups: MPI uses objects called communicators and groups to define which collection of processes may communicate with each other. -
Parallel Computer Architecture
Parallel Computer Architecture Introduction to Parallel Computing CIS 410/510 Department of Computer and Information Science Lecture 2 – Parallel Architecture Outline q Parallel architecture types q Instruction-level parallelism q Vector processing q SIMD q Shared memory ❍ Memory organization: UMA, NUMA ❍ Coherency: CC-UMA, CC-NUMA q Interconnection networks q Distributed memory q Clusters q Clusters of SMPs q Heterogeneous clusters of SMPs Introduction to Parallel Computing, University of Oregon, IPCC Lecture 2 – Parallel Architecture 2 Parallel Architecture Types • Uniprocessor • Shared Memory – Scalar processor Multiprocessor (SMP) processor – Shared memory address space – Bus-based memory system memory processor … processor – Vector processor bus processor vector memory memory – Interconnection network – Single Instruction Multiple processor … processor Data (SIMD) network processor … … memory memory Introduction to Parallel Computing, University of Oregon, IPCC Lecture 2 – Parallel Architecture 3 Parallel Architecture Types (2) • Distributed Memory • Cluster of SMPs Multiprocessor – Shared memory addressing – Message passing within SMP node between nodes – Message passing between SMP memory memory nodes … M M processor processor … … P … P P P interconnec2on network network interface interconnec2on network processor processor … P … P P … P memory memory … M M – Massively Parallel Processor (MPP) – Can also be regarded as MPP if • Many, many processors processor number is large Introduction to Parallel Computing, University of Oregon, -
Reducing Cache Coherence Traffic with a NUMA-Aware Runtime Approach
This article has been accepted for publication in a future issue of this journal, but has not been fully edited. Content may change prior to final publication. Citation information: DOI 10.1109/TPDS.2017.2787123, IEEE Transactions on Parallel and Distributed Systems IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, VOL. XX, NO. X, MONTH YEAR 1 Reducing Cache Coherence Traffic with a NUMA-Aware Runtime Approach Paul Caheny, Lluc Alvarez, Said Derradji, Mateo Valero, Fellow, IEEE, Miquel Moreto,´ Marc Casas Abstract—Cache Coherent NUMA (ccNUMA) architectures are a widespread paradigm due to the benefits they provide for scaling core count and memory capacity. Also, the flat memory address space they offer considerably improves programmability. However, ccNUMA architectures require sophisticated and expensive cache coherence protocols to enforce correctness during parallel executions, which trigger a significant amount of on- and off-chip traffic in the system. This paper analyses how coherence traffic may be best constrained in a large, real ccNUMA platform comprising 288 cores through the use of a joint hardware/software approach. For several benchmarks, we study coherence traffic in detail under the influence of an added hierarchical cache layer in the directory protocol combined with runtime managed NUMA-aware scheduling and data allocation techniques to make most efficient use of the added hardware. The effectiveness of this joint approach is demonstrated by speedups of 3.14x to 9.97x and coherence traffic reductions of up to 99% in comparison to NUMA-oblivious scheduling and data allocation. Index Terms—Cache Coherence, NUMA, Task-based programming models F 1 INTRODUCTION HE ccNUMA approach to memory system architecture the data is allocated within the NUMA regions of the system T has become a ubiquitous choice in the design-space [10], [28]. -
Thread-Level Parallelism – Part 1
Chapter 5: Thread-Level Parallelism – Part 1 Introduction What is a parallel or multiprocessor system? Why parallel architecture? Performance potential Flynn classification Communication models Architectures Centralized shared-memory Distributed shared-memory Parallel programming Synchronization Memory consistency models What is a parallel or multiprocessor system? Multiple processor units working together to solve the same problem Key architectural issue: Communication model Why parallel architectures? Absolute performance Technology and architecture trends Dennard scaling, ILP wall, Moore’s law Multicore chips Connect multicore together for even more parallelism Performance Potential Amdahl's Law is pessimistic Let s be the serial part Let p be the part that can be parallelized n ways Serial: SSPPPPPP 6 processors: SSP P P P P P Speedup = 8/3 = 2.67 1 T(n) = s+p/n As n → , T(n) → 1 s Pessimistic Performance Potential (Cont.) Gustafson's Corollary Amdahl's law holds if run same problem size on larger machines But in practice, we run larger problems and ''wait'' the same time Performance Potential (Cont.) Gustafson's Corollary (Cont.) Assume for larger problem sizes Serial time fixed (at s) Parallel time proportional to problem size (truth more complicated) Old Serial: SSPPPPPP 6 processors: SSPPPPPP PPPPPP PPPPPP PPPPPP PPPPPP PPPPPP Hypothetical Serial: SSPPPPPP PPPPPP PPPPPP PPPPPP PPPPPP PPPPPP Speedup = (8+5*6)/8 = 4.75 T'(n) = s + n*p; T'() → !!!! How does your algorithm ''scale up''? Flynn classification Single-Instruction Single-Data -
Parallel Programming Using Openmp Feb 2014
OpenMP tutorial by Brent Swartz February 18, 2014 Room 575 Walter 1-4 P.M. © 2013 Regents of the University of Minnesota. All rights reserved. Outline • OpenMP Definition • MSI hardware Overview • Hyper-threading • Programming Models • OpenMP tutorial • Affinity • OpenMP 4.0 Support / Features • OpenMP Optimization Tips © 2013 Regents of the University of Minnesota. All rights reserved. OpenMP Definition The OpenMP Application Program Interface (API) is a multi-platform shared-memory parallel programming model for the C, C++ and Fortran programming languages. Further information can be found at http://www.openmp.org/ © 2013 Regents of the University of Minnesota. All rights reserved. OpenMP Definition Jointly defined by a group of major computer hardware and software vendors and the user community, OpenMP is a portable, scalable model that gives shared-memory parallel programmers a simple and flexible interface for developing parallel applications for platforms ranging from multicore systems and SMPs, to embedded systems. © 2013 Regents of the University of Minnesota. All rights reserved. MSI Hardware • MSI hardware is described here: https://www.msi.umn.edu/hpc © 2013 Regents of the University of Minnesota. All rights reserved. MSI Hardware The number of cores per node varies with the type of Xeon on that node. We define: MAXCORES=number of cores/node, e.g. Nehalem=8, Westmere=12, SandyBridge=16, IvyBridge=20. © 2013 Regents of the University of Minnesota. All rights reserved. MSI Hardware Since MAXCORES will not vary within the PBS job (the itasca queues are split by Xeon type), you can determine this at the start of the job (in bash): MAXCORES=`grep "core id" /proc/cpuinfo | wc -l` © 2013 Regents of the University of Minnesota. -
Enabling Efficient Use of UPC and Openshmem PGAS Models on GPU Clusters
Enabling Efficient Use of UPC and OpenSHMEM PGAS Models on GPU Clusters Presented at GTC ’15 Presented by Dhabaleswar K. (DK) Panda The Ohio State University E-mail: [email protected] hCp://www.cse.ohio-state.edu/~panda Accelerator Era GTC ’15 • Accelerators are becominG common in hiGh-end system architectures Top 100 – Nov 2014 (28% use Accelerators) 57% use NVIDIA GPUs 57% 28% • IncreasinG number of workloads are beinG ported to take advantage of NVIDIA GPUs • As they scale to larGe GPU clusters with hiGh compute density – hiGher the synchronizaon and communicaon overheads – hiGher the penalty • CriPcal to minimize these overheads to achieve maximum performance 3 Parallel ProGramminG Models Overview GTC ’15 P1 P2 P3 P1 P2 P3 P1 P2 P3 LoGical shared memory Shared Memory Memory Memory Memory Memory Memory Memory Shared Memory Model Distributed Memory Model ParPPoned Global Address Space (PGAS) DSM MPI (Message PassinG Interface) Global Arrays, UPC, Chapel, X10, CAF, … • ProGramminG models provide abstract machine models • Models can be mapped on different types of systems - e.G. Distributed Shared Memory (DSM), MPI within a node, etc. • Each model has strenGths and drawbacks - suite different problems or applicaons 4 Outline GTC ’15 • Overview of PGAS models (UPC and OpenSHMEM) • Limitaons in PGAS models for GPU compuPnG • Proposed DesiGns and Alternaves • Performance Evaluaon • ExploiPnG GPUDirect RDMA 5 ParPPoned Global Address Space (PGAS) Models GTC ’15 • PGAS models, an aracPve alternave to tradiPonal message passinG - Simple -
An Overview of the PARADIGM Compiler for Distributed-Memory
appeared in IEEE Computer, Volume 28, Number 10, October 1995 An Overview of the PARADIGM Compiler for DistributedMemory Multicomputers y Prithvira j Banerjee John A Chandy Manish Gupta Eugene W Ho dges IV John G Holm Antonio Lain Daniel J Palermo Shankar Ramaswamy Ernesto Su Center for Reliable and HighPerformance Computing University of Illinois at UrbanaChampaign W Main St Urbana IL Phone Fax banerjeecrhcuiucedu Abstract Distributedmemory multicomputers suchasthetheIntel Paragon the IBM SP and the Thinking Machines CM oer signicant advantages over sharedmemory multipro cessors in terms of cost and scalability Unfortunately extracting all the computational p ower from these machines requires users to write ecientsoftware for them which is a lab orious pro cess The PARADIGM compiler pro ject provides an automated means to parallelize programs written using a serial programming mo del for ecient execution on distributedmemory multicomput ers In addition to p erforming traditional compiler optimizations PARADIGM is unique in that it addresses many other issues within a unied platform automatic data distribution commu nication optimizations supp ort for irregular computations exploitation of functional and data parallelism and multithreaded execution This pap er describ es the techniques used and pro vides exp erimental evidence of their eectiveness on the Intel Paragon the IBM SP and the Thinking Machines CM Keywords compilers distributed memorymulticomputers parallelizing compilers parallel pro cessing This research was supp orted -
Efficient Synchronization Mechanisms for Scalable GPU Architectures
Efficient Synchronization Mechanisms for Scalable GPU Architectures by Xiaowei Ren M.Sc., Xi’an Jiaotong University, 2015 B.Sc., Xi’an Jiaotong University, 2012 a thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the faculty of graduate and postdoctoral studies (Electrical and Computer Engineering) The University of British Columbia (Vancouver) October 2020 © Xiaowei Ren, 2020 The following individuals certify that they have read, and recommend to the Faculty of Graduate and Postdoctoral Studies for acceptance, the dissertation entitled: Efficient Synchronization Mechanisms for Scalable GPU Architectures submitted by Xiaowei Ren in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Electrical and Computer Engineering. Examining Committee: Mieszko Lis, Electrical and Computer Engineering Supervisor Steve Wilton, Electrical and Computer Engineering Supervisory Committee Member Konrad Walus, Electrical and Computer Engineering University Examiner Ivan Beschastnikh, Computer Science University Examiner Vijay Nagarajan, School of Informatics, University of Edinburgh External Examiner Additional Supervisory Committee Members: Tor Aamodt, Electrical and Computer Engineering Supervisory Committee Member ii Abstract The Graphics Processing Unit (GPU) has become a mainstream computing platform for a wide range of applications. Unlike latency-critical Central Processing Units (CPUs), throughput-oriented GPUs provide high performance by exploiting massive application parallelism. -
Concepts from High-Performance Computing Lecture a - Overview of HPC Paradigms
Concepts from High-Performance Computing Lecture A - Overview of HPC paradigms OBJECTIVE: The clock speeds of computer processors are topping out as the limits of traditional computer chip technology are being reached. Increased performance is being achieved by increasing the number of compute cores on a chip. In order to understand and take advantage of this disruptive technology, one must appreciate the paradigms of high-performance computing. The economics of technology Technology is governed by economics. The rate at which a computer processor can execute instructions (e.g., floating-point operations) is proportional to the frequency of its clock. However, 2 power ∼ (voltage) × (frequency), voltage ∼ frequency, 3 =⇒ power ∼ (frequency) e.g., a 50% increase in performance by increasing frequency requires 3.4 times more power. By going to 2 cores, this performance increase can be achieved with 16% less power1. 1This assumes you can make 100% use of each core. Moreover, transistors are getting so small that (undesirable) quantum effects (such as electron tunnelling) are becoming non-negligible. → Increasing frequency is no longer an option! When increasing frequency was possible, software got faster because hardware got faster. In the near future, the only software that will survive will be that which can take advantage of parallel processing. It is already difficult to do leading-edge computational science without parallel computing; this situation can only get worse. Computational scientists who ignore parallel computing do so at their own risk! Most of numerical analysis (and software in general) was designed for the serial processor. There is a lot of numerical analysis that needs to be revisited in this new world of computing. -
In Reference to RPC: It's Time to Add Distributed Memory
In Reference to RPC: It’s Time to Add Distributed Memory Stephanie Wang, Benjamin Hindman, Ion Stoica UC Berkeley ACM Reference Format: D (e.g., Apache Spark) F (e.g., Distributed TF) Stephanie Wang, Benjamin Hindman, Ion Stoica. 2021. In Refer- A B C i ii 1 2 3 ence to RPC: It’s Time to Add Distributed Memory. In Workshop RPC E on Hot Topics in Operating Systems (HotOS ’21), May 31-June 2, application 2021, Ann Arbor, MI, USA. ACM, New York, NY, USA, 8 pages. Figure 1: A single “application” actually consists of many https://doi.org/10.1145/3458336.3465302 components and distinct frameworks. With no shared address space, data (squares) must be copied between 1 Introduction different components. RPC has been remarkably successful. Most distributed ap- Load balancer Scheduler + Mem Mgt plications built today use an RPC runtime such as gRPC [3] Executors or Apache Thrift [2]. The key behind RPC’s success is the Servers request simple but powerful semantics of its programming model. client data request cache In particular, RPC has no shared state: arguments and return Distributed object store values are passed by value between processes, meaning that (a) (b) they must be copied into the request or reply. Thus, argu- ments and return values are inherently immutable. These Figure 2: Logical RPC architecture: (a) today, and (b) with a shared address space and automatic memory management. simple semantics facilitate highly efficient and reliable imple- mentations, as no distributed coordination is required, while then return a reference, i.e., some metadata that acts as a remaining useful for a general set of distributed applications. -
CIS 501 Computer Architecture This Unit: Shared Memory
This Unit: Shared Memory Multiprocessors App App App • Thread-level parallelism (TLP) System software • Shared memory model • Multiplexed uniprocessor CIS 501 Mem CPUCPU I/O CPUCPU • Hardware multihreading CPUCPU Computer Architecture • Multiprocessing • Synchronization • Lock implementation Unit 9: Multicore • Locking gotchas (Shared Memory Multiprocessors) • Cache coherence Slides originally developed by Amir Roth with contributions by Milo Martin • Bus-based protocols at University of Pennsylvania with sources that included University of • Directory protocols Wisconsin slides by Mark Hill, Guri Sohi, Jim Smith, and David Wood. • Memory consistency models CIS 501 (Martin): Multicore 1 CIS 501 (Martin): Multicore 2 Readings Beyond Implicit Parallelism • Textbook (MA:FSPTCM) • Consider “daxpy”: • Sections 7.0, 7.1.3, 7.2-7.4 daxpy(double *x, double *y, double *z, double a): for (i = 0; i < SIZE; i++) • Section 8.2 Z[i] = a*x[i] + y[i]; • Lots of instruction-level parallelism (ILP) • Great! • But how much can we really exploit? 4 wide? 8 wide? • Limits to (efficient) super-scalar execution • But, if SIZE is 10,000, the loop has 10,000-way parallelism! • How do we exploit it? CIS 501 (Martin): Multicore 3 CIS 501 (Martin): Multicore 4 Explicit Parallelism Multiplying Performance • Consider “daxpy”: • A single processor can only be so fast daxpy(double *x, double *y, double *z, double a): • Limited clock frequency for (i = 0; i < SIZE; i++) • Limited instruction-level parallelism Z[i] = a*x[i] + y[i]; • Limited cache hierarchy • Break it