The Low Power Architecture Approach Towards Exascale Computing
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2020 ALCF Science Report
ARGONNE LEADERSHIP 2020 COMPUTING FACILITY Science On the cover: A snapshot of a visualization of the SARS-CoV-2 viral envelope comprising 305 million atoms. A multi-institutional research team used multiple supercomputing resources, including the ALCF’s Theta system, to optimize codes in preparation for large-scale simulations of the SARS-CoV-2 spike protein that were recognized with the ACM Gordon Bell Special Prize for HPC-Based COVID-19 Research. Image: Rommie Amaro, Lorenzo Casalino, Abigail Dommer, and Zied Gaieb, University of California San Diego 2020 SCIENCE CONTENTS 03 Message from ALCF Leadership 04 Argonne Leadership Computing Facility 10 Advancing Science with HPC 06 About ALCF 12 ALCF Resources Contribute to Fight Against COVID-19 07 ALCF Team 16 Edge Services Propel Data-Driven Science 08 ALCF Computing Resources 18 Preparing for Science in the Exascale Era 26 Science 28 Accessing ALCF GPCNeT: Designing a Benchmark 43 Materials Science 51 Physics Resources for Science Suite for Inducing and Measuring Constructing and Navigating Hadronic Light-by-Light Scattering Contention in HPC Networks Polymorphic Landscapes of and Vacuum Polarization Sudheer Chunduri Molecular Crystals Contributions to the Muon 30 2020 Science Highlights Parallel Relational Algebra for Alexandre Tkatchenko Anomalous Magnetic Moment Thomas Blum 31 Biological Sciences Logical Inferencing at Scale Data-Driven Materials Sidharth Kumar Scalable Reinforcement-Learning- Discovery for Optoelectronic The Last Journey Based Neural Architecture Search Applications -
Performance Analysis on Energy Efficient High
Performance Analysis on Energy Efficient High-Performance Architectures Roman Iakymchuk, François Trahay To cite this version: Roman Iakymchuk, François Trahay. Performance Analysis on Energy Efficient High-Performance Architectures. CC’13 : International Conference on Cluster Computing, Jun 2013, Lviv, Ukraine. hal-00865845 HAL Id: hal-00865845 https://hal.archives-ouvertes.fr/hal-00865845 Submitted on 25 Sep 2013 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Performance Analysis on Energy Ecient High-Performance Architectures Roman Iakymchuk1 and François Trahay1 1Institut Mines-Télécom Télécom SudParis 9 Rue Charles Fourier 91000 Évry France {roman.iakymchuk, francois.trahay}@telecom-sudparis.eu Abstract. With the shift in high-performance computing (HPC) towards energy ecient hardware architectures such as accelerators (NVIDIA GPUs) and embedded systems (ARM processors), arose the need to adapt existing perfor- mance analysis tools to these new systems. We present EZTrace a performance analysis framework for parallel applications. EZTrace relies on several core components, in particular on a mechanism for instrumenting func- tions, a lightweight tool for recording events, and a generic interface for writing traces. To support EZTrace on energy ecient HPC systems, we developed a CUDA module and ported EZTrace to ARM processors. -
Biology at the Exascale
Biology at the Exascale Advances in computational hardware and algorithms that have transformed areas of physics and engineering have recently brought similar benefits to biology and biomedical research. Contributors: Laura Wolf and Dr. Gail W. Pieper, Argonne National Laboratory Biological sciences are undergoing a revolution. High‐performance computing has accelerated the transition from hypothesis‐driven to design‐driven research at all scales, and computational simulation of biological systems is now driving the direction of biological experimentation and the generation of insights. As recently as ten years ago, success in predicting how proteins assume their intricate three‐dimensional forms was considered highly unlikely if there was no related protein of known structure. For those proteins whose sequence resembles a protein of known structure, the three‐dimensional structure of the known protein can be used as a “template” to deduce the unknown protein structure. At the time, about 60 percent of protein sequences arising from the genome sequencing projects had no homologs of known structure. In 2001, Rosetta, a computational technique developed by Dr. David Baker and colleagues at the Howard Hughes Medical Institute, successfully predicted the three‐dimensional structure of a folded protein from its linear sequence of amino acids. (Baker now develops tools to enable researchers to test new protein scaffolds, examine additional structural hypothesis regarding determinants of binding, and ultimately design proteins that tightly bind endogenous cellular proteins.) Two years later, a thirteen‐year project to sequence the human genome was declared a success, making available to scientists worldwide the billions of letters of DNA to conduct postgenomic research, including annotating the human genome. -
Supercomputer Fugaku
Supercomputer Fugaku Toshiyuki Shimizu Feb. 18th, 2020 FUJITSU LIMITED Copyright 2020 FUJITSU LIMITED Outline ◼ Fugaku project overview ◼ Co-design ◼ Approach ◼ Design results ◼ Performance & energy consumption evaluation ◼ Green500 ◼ OSS apps ◼ Fugaku priority issues ◼ Summary 1 Copyright 2020 FUJITSU LIMITED Supercomputer “Fugaku”, formerly known as Post-K Focus Approach Application performance Co-design w/ application developers and Fujitsu-designed CPU core w/ high memory bandwidth utilizing HBM2 Leading-edge Si-technology, Fujitsu's proven low power & high Power efficiency performance logic design, and power-controlling knobs Arm®v8-A ISA with Scalable Vector Extension (“SVE”), and Arm standard Usability Linux 2 Copyright 2020 FUJITSU LIMITED Fugaku project schedule 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 Fugaku development & delivery Manufacturing, Apps Basic Detailed design & General Feasibility study Installation review design Implementation operation and Tuning Select Architecture & Co-Design w/ apps groups apps sizing 3 Copyright 2020 FUJITSU LIMITED Fugaku co-design ◼ Co-design goals ◼ Obtain the best performance, 100x apps performance than K computer, within power budget, 30-40MW • Design applications, compilers, libraries, and hardware ◼ Approach ◼ Estimate perf & power using apps info, performance counts of Fujitsu FX100, and cycle base simulator • Computation time: brief & precise estimation • Communication time: bandwidth and latency for communication w/ some attributes for communication patterns • I/O time: ◼ Then, optimize apps/compilers etc. and resolve bottlenecks ◼ Estimation of performance and power ◼ Precise performance estimation for primary kernels • Make & run Fugaku objects on the Fugaku cycle base simulator ◼ Brief performance estimation for other sections • Replace performance counts of FX100 w/ Fugaku params: # of inst. commit/cycle, wait cycles of barrier, inst. -
Measuring Power Consumption on IBM Blue Gene/P
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Springer - Publisher Connector Comput Sci Res Dev DOI 10.1007/s00450-011-0192-y SPECIAL ISSUE PAPER Measuring power consumption on IBM Blue Gene/P Michael Hennecke · Wolfgang Frings · Willi Homberg · Anke Zitz · Michael Knobloch · Hans Böttiger © The Author(s) 2011. This article is published with open access at Springerlink.com Abstract Energy efficiency is a key design principle of the Top10 supercomputers on the November 2010 Top500 list IBM Blue Gene series of supercomputers, and Blue Gene [1] alone (which coincidentally are also the 10 systems with systems have consistently gained top GFlops/Watt rankings an Rpeak of at least one PFlops) are consuming a total power on the Green500 list. The Blue Gene hardware and man- of 33.4 MW [2]. These levels of power consumption are al- agement software provide built-in features to monitor power ready a concern for today’s Petascale supercomputers (with consumption at all levels of the machine’s power distribu- operational expenses becoming comparable to the capital tion network. This paper presents the Blue Gene/P power expenses for procuring the machine), and addressing the measurement infrastructure and discusses the operational energy challenge clearly is one of the key issues when ap- aspects of using this infrastructure on Petascale machines. proaching Exascale. We also describe the integration of Blue Gene power moni- While the Flops/Watt metric is useful, its emphasis on toring capabilities into system-level tools like LLview, and LINPACK performance and thus computational load ne- highlight some results of analyzing the production workload glects the fact that the energy costs of memory references at Research Center Jülich (FZJ). -
ECP Software Technology Capability Assessment Report
ECP-RPT-ST-0001-2018 ECP Software Technology Capability Assessment Report Michael A. Heroux, Director ECP ST Jonathan Carter, Deputy Director ECP ST Rajeev Thakur, Programming Models & Runtimes Lead Jeffrey Vetter, Development Tools Lead Lois Curfman McInnes, Mathematical Libraries Lead James Ahrens, Data & Visualization Lead J. Robert Neely, Software Ecosystem & Delivery Lead July 1, 2018 DOCUMENT AVAILABILITY Reports produced after January 1, 1996, are generally available free via US Department of Energy (DOE) SciTech Connect. Website http://www.osti.gov/scitech/ Reports produced before January 1, 1996, may be purchased by members of the public from the following source: National Technical Information Service 5285 Port Royal Road Springfield, VA 22161 Telephone 703-605-6000 (1-800-553-6847) TDD 703-487-4639 Fax 703-605-6900 E-mail [email protected] Website http://www.ntis.gov/help/ordermethods.aspx Reports are available to DOE employees, DOE contractors, Energy Technology Data Exchange representatives, and International Nuclear Information System representatives from the following source: Office of Scientific and Technical Information PO Box 62 Oak Ridge, TN 37831 Telephone 865-576-8401 Fax 865-576-5728 E-mail [email protected] Website http://www.osti.gov/contact.html This report was prepared as an account of work sponsored by an agency of the United States Government. Neither the United States Government nor any agency thereof, nor any of their employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. -
Compute System Metrics (Bof)
Setting Trends for Energy-Efficient Supercomputing Natalie Bates, EE HPC Working Group Tahir Cader, HP & The Green Grid Wu Feng, Virginia Tech & Green500 John Shalf, Berkeley Lab & NERSC Horst Simon, Berkeley Lab & TOP500 Erich Strohmaier, Berkeley Lab & TOP500 ISC BoF; May 31, 2010; Hamburg, Germany Why We Are Here • “Can only improve what you can measure” • Context – Power consumption of HPC and facilities cost are increasing • What is needed? – Converge on a common basis between different research and industry groups for: •metrics • methodologies • workloads for energy-efficient supercomputing, so we can make progress towards solutions. Current Technology Roadmaps will Depart from Historical Gains Power is the Leading Design Constraint From Peter Kogge, DARPA Exascale Study … and the power costs will still be staggering From Peter Kogge, DARPA Exascale Study $1M per megawatt per year! (with CHEAP power) Absolute Power Levels Power Consumption Power Efficiency What We Have Done • Stages of Green Supercomputing – Denial – Awareness – Hype – Substance The Denial Phase (2001 – 2004) • Green Destiny – A 240-Node Supercomputer in 5 Sq. Ft. – LINPACK Performance: 101 Gflops – Power Consumption: 3.2 kW • Prevailing Views embedded processor – “Green Destiny is so low power that it runs just as fast when it is unplugged.” – “In HPC, no one cares about power & cooling, and no one ever will …” – “Moore’s Law for Power will stimulate the economy by creating a new market in cooling technologies.” The Awareness Phase (2004 – 2008) • Green Movements & Studies – IEEE Int’l Parallel & Distributed Processing Symp. (2005) • Workshop on High-Performance, Power-Aware Computing (HPPAC) Green500 • Metrics: Energy-Delay Product and FLOPS/Watt FLOPS/watt – Green Grid (2007) • Industry-driven consortium of all the top system vendors • Metric: Power Usage Efficiency (PUE) – Kogge et al., “ExaScale Computing Study: Technology Challenges in Achieving Exascale Systems, DARPA ITO, AFRL, 2008. -
Experimental and Analytical Study of Xeon Phi Reliability
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Lume 5.8 Experimental and Analytical Study of Xeon Phi Reliability Daniel Oliveira Laércio Pilla Nathan DeBardeleben Institute of Informatics, UFRGS Department of Informatics and Los Alamos National Laboratory Porto Alegre, RS, Brazil Statistics, UFSC Los Alamos, NM, US Florianópolis, SC, Brazil Sean Blanchard Heather Quinn Israel Koren Los Alamos National Laboratory Los Alamos National Laboratory University of Massachusetts, UMass Los Alamos, NM, US Los Alamos, NM, US Amherst, MA, US Philippe Navaux Paolo Rech Institute of Informatics, UFRGS Institute of Informatics, UFRGS Porto Alegre, RS, Brazil Porto Alegre, RS, Brazil ABSTRACT 1 INTRODUCTION We present an in-depth analysis of transient faults effects on HPC Accelerators are extensively used to expedite calculations in large applications in Intel Xeon Phi processors based on radiation experi- HPC centers. Tianhe-2, Cori, Trinity, and Oakforest-PACS use Intel ments and high-level fault injection. Besides measuring the realistic Xeon Phi and many other top supercomputers use other forms of error rates of Xeon Phi, we quantify Silent Data Corruption (SDCs) accelerators [17]. The main reasons to use accelerators are their by correlating the distribution of corrupted elements in the out- high computational capacity, low cost, reduced per-task energy put to the application’s characteristics. We evaluate the benefits consumption, and flexible development platforms. Unfortunately, of imprecise computing for reducing the programs’ error rate. For accelerators are also extremely likely to experience transient errors example, for HotSpot a 0.5% tolerance in the output value reduces as they are built with cutting-edge technology, have very high the error rate by 85%. -
2010 IBM and the Environment Report
2010 IBM and the Environment Report Committed to environmental leadership across all of IBM's business activities IBM and the Environment - 2010 Annual Report IBM AND THE ENVIRONMENT IBM has long maintained an unwavering commitment to environmental protection, which was formalized by a corporate environmental policy in 1971. The policy calls for IBM to be an environmental leader across all of our business activities, from our research, operations and products to the services and solutions we provide our clients to help them be more protective of the environment. This section of IBM’s Corporate Responsibility Report describes IBM’s programs and performance in the following environmental areas: A Commitment to Environmental 3 Energy and Climate Programs 36 Leadership A Five-Part Strategy 36 Conserving Energy 37 Global Governance and Management 4 CO2 Emissions Reduction 42 System PFC Emissions Reduction 43 Global Environmental Management 4 Renewable Energy 45 System Voluntary Climate Partnerships 46 Stakeholder Engagement 7 Transportation and Logistics 47 Voluntary Partnerships and Initiatives 8 Initiatives Environmental Investment and Return 9 Energy and Climate Protection in 48 the Supply Chain Process Stewardship 12 Environmentally Preferable Substances 12 Remediation 52 and Materials Nanotechnology 15 Audits and Compliance 53 Accidental Releases 53 Pollution Prevention 17 Fines and Penalties 54 Hazardous Waste 17 Nonhazardous Waste 19 Awards and Recognition 55 Chemical Use and Management 20 Internal Recognition 55 External Recognition -
101117-Green Computing and Gpus
Wu Feng, Ph.D. Department of Computer Science Department of Electrical & Computer Engineering NSF Center for High-Performance Reconfigurable CompuAng © W. Feng, SC 2010 We have spent decades focusing on performance, performance, performance (and price/performance). © W. Feng, SC 2010 A ranking of the fastest 500 supercomputers in the world • Benchmark – LINPACK: Solves a (random) dense system of linear equaons in double-precision (64 bits) arithmeAc. • Evaluaon Metric – Performance (i.e., Speed) • Floang-Operaons Per Second (FLOPS) • Web Site – h\p://www.top500.org/ © W. Feng, SC 2010 • Metrics for Evaluang Supercomputers – Performance (i.e., Speed) • Metric: Floang-Operaons Per Second (FLOPS) – Price/Performance Cost Efficiency • Metric: AcquisiAon Cost / FLOPS • Performance & price/performance are important metrics, but … © W. Feng, September 2010 • Electrical power costs $$$$. Source: IDC, 2006 © W. Feng, SC 2010 Examples: Power, Cooling, and Infrastructure $$$ • Japanese Earth Simulator – Power & Cooling: 12 MW $10M/year © W. Feng, SC 2010 • Too much power affects efficiency, reliability, and availability. – Anecdotal Evidence from a “Machine Room” in 2001 - 2002 • Winter: “Machine Room” Temperature of 70-75° F – Failure approximately once per week. • Summer: “Machine Room” Temperature of 85-90° F – Failure approximately twice per week. – Arrenhius’ Equaon (applied to microelectronics) • For every 10° C (18° F) increase in temperature, … the failure rate of a system doubles.* * W. Feng, M. Warren, and E. Weigle, “The Bladed Beowulf: A Cost-EffecAve Alternave to TradiAonal Beowulfs,” IEEE Cluster, Sept. 2002. © W. Feng, SC 2010 • Debuted at SC 2007 • Goal: Raise Awareness in the Energy Efficiency of Supercompung – Drive energy efficiency as a first-order design constraint (on par with performance). -
Tibidabo$: Making the Case for an ARM-Based HPC System
TibidaboI: Making the Case for an ARM-Based HPC System Nikola Rajovica,b,∗, Alejandro Ricoa,b, Nikola Puzovica, Chris Adeniyi-Jonesc, Alex Ramireza,b aComputer Sciences Department, Barcelona Supercomputing Center, Barcelona, Spain bDepartment d'Arquitectura de Computadors, Universitat Polit`ecnica de Catalunya - BarcelonaTech, Barcelona, Spain cARM Ltd., Cambridge, United Kingdom Abstract It is widely accepted that future HPC systems will be limited by their power consumption. Current HPC systems are built from commodity server pro- cessors, designed over years to achieve maximum performance, with energy efficiency being an after-thought. In this paper we advocate a different ap- proach: building HPC systems from low-power embedded and mobile tech- nology parts, over time designed for maximum energy efficiency, which now show promise for competitive performance. We introduce the architecture of Tibidabo, the first large-scale HPC clus- ter built from ARM multicore chips, and a detailed performance and energy efficiency evaluation. We present the lessons learned for the design and im- provement in energy efficiency of future HPC systems based on such low- power cores. Based on our experience with the prototype, we perform simu- lations to show that a theoretical cluster of 16-core ARM Cortex-A15 chips would increase the energy efficiency of our cluster by 8.7x, reaching an energy efficiency of 1046 MFLOPS/W. Keywords: high-performance computing, embedded processors, mobile ITibidabo is a mountain overlooking Barcelona ∗Corresponding author Email addresses: [email protected] (Nikola Rajovic), [email protected] (Alejandro Rico), [email protected] (Nikola Puzovic), [email protected] (Chris Adeniyi-Jones), [email protected] (Alex Ramirez) Preprint of the article accepted for publication in Future Generation Computer Systems, Elsevier processors, low power, cortex-a9, cortex-a15, energy efficiency 1. -
Supermicro “Industry-Standard Green HPC Systems”
Confidential Industry-Standard Green HPC Systems HPC Advisory Council Brazil Conference 2014 May 26, 2014 University of São Paulo Attila A. Nagy Senior IT Consultant © Supermicro 2014 Confidential HPC systems: What the industry is doing Architecture Processor 0.4 15.4 8.0 0.6 Xeon Cluster 8.6 Opteron MPP Power 84.6 82.4 Sparc Other system share (%) system share (%) Source: The Top500 list of November 2013. http://www.top500.org Confidential HPC systems: What the industry is doing Interconnect Operating System 2.2 1.4 4.0 2.2 Infiniband Linux 10.0 GbE 15.4 41.4 Unix 10GbE Other 96.4 Custom 27.0 Cray system share (%) Other system share (%) Source: The Top500 list of November 2013. http://www.top500.org Confidential Industry-standard HPC clusters Standard x86 servers throughout . Compute nodes . Head/Management/Control nodes . Storage nodes Infiniband and/or Ethernet networks . Main interconnect . Cluster management and administration . Out-of-band management Linux OS environment . Comprehensive software stack for HPC . Large availability of HPC software tools . Large collaboration community Confidential Typical HPC Cluster IB Fabric Head & Management Nodes Campus Ethernet Fabric x86 servers/Linux Network Infiniband The Beowulf cluster concept Ethernet OOB Mgmt Network is as solidNetwork as ever!! Network Storage Nodes Compute Nodes x86 servers x86 servers Linux Linux Parallel FS Confidential Accelerator/Coprocessor usage All top ten systems in the latest Green500 list are coprocessor Accelerator/CP based* . Two petaflop systems N/A Up to 5x improvements in: 89.4 Nvidia . Power consumption . Physical space Xeon Phi 7.4 . Cost Other 0.8 2.4 GPUs/MICs: 80% of HPC users system share (%) at least testing them Source: The Top500 list of November 2013.