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Amphibia-Reptilia 38 (2017): 483-502 Resurrection of genus Nidirana (Anura: Ranidae) and synonymizing N. caldwelli with N. adenopleura, with description of a new species from China Zhi-Tong Lyu, Zhao-Chi Zeng, Jian Wang, Chao-Yu Lin, Zu-Yao Liu, Ying-Yong Wang∗ Abstract. The taxonomy of Babina sensu lato was controversial in the past decades. In this study, the phylogeny of genus Babina sensu lato was re-constructed based on genetic analysis, morphological comparison and advertisement call analysis. We found that Babina sensu stricto and previous subgenus Nidirana should be two distinct genera in the family Ranidae. N. caldwelli is confirmed to be a synonym of N. adenopleura because of the small genetic divergence and the lack of distinct morphological differences. A new species, Nidirana nankunensis sp. nov. is described based on a series of specimens collected from Mt. Nankun, Guangdong Province, China, which can be distinguished from other known congeners by having a behavior of nest construction, distinctive advertisement calls, significant divergence in the mitochondrial genes, and a combination of morphological characters. Currently, the genus Babina contains two species and the genus Nidirana contains eight species. Keywords: Babina, bioacoustic, mitochondrial DNA, morphology, Nidirana nankunensis sp. nov., phylogeny. Introduction folds (Dubois, 1992). Subsequently, Nidirana was recognized as a separate genus by Chen The ranid genus Babina was established and de- et al. (2005), based on a molecular phyloge- scribed on the basis of Rana holsti Boulenger, netic tree of Southeast Asian ranids that only 1892 (type species) and Rana subaspera Bar- included one Nidirana species – R. (N.) cha- bour, 1908 by Thompson (1912). -
Long Island Sound Habitat Restoration Initiative
LONG ISLAND SOUND HABITAT RESTORATION INITIATIVE Technical Support for Coastal Habitat Restoration FEBRUARY 2003 TABLE OF CONTENTS TABLE OF CONTENTS INTRODUCTION ....................................................................i GUIDING PRINCIPLES.................................................................................. ii PROJECT BOUNDARY.................................................................................. iv SITE IDENTIFICATION AND RANKING........................................................... iv LITERATURE CITED ..................................................................................... vi ACKNOWLEDGEMENTS............................................................................... vi APPENDIX I-A: RANKING CRITERIA .....................................................................I-A-1 SECTION 1: TIDAL WETLANDS ................................................1-1 DESCRIPTION ............................................................................................. 1-1 Salt Marshes ....................................................................................................1-1 Brackish Marshes .............................................................................................1-3 Tidal Fresh Marshes .........................................................................................1-4 VALUES AND FUNCTIONS ........................................................................... 1-4 STATUS AND TRENDS ................................................................................ -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Nansei Islands Biological Diversity Evaluation Project Report 1 Chapter 1
Introduction WWF Japan’s involvement with the Nansei Islands can be traced back to a request in 1982 by Prince Phillip, Duke of Edinburgh. The “World Conservation Strategy”, which was drafted at the time through a collaborative effort by the WWF’s network, the International Union for Conservation of Nature (IUCN), and the United Nations Environment Programme (UNEP), posed the notion that the problems affecting environments were problems that had global implications. Furthermore, the findings presented offered information on precious environments extant throughout the globe and where they were distributed, thereby providing an impetus for people to think about issues relevant to humankind’s harmonious existence with the rest of nature. One of the precious natural environments for Japan given in the “World Conservation Strategy” was the Nansei Islands. The Duke of Edinburgh, who was the President of the WWF at the time (now President Emeritus), naturally sought to promote acts of conservation by those who could see them through most effectively, i.e. pertinent conservation parties in the area, a mandate which naturally fell on the shoulders of WWF Japan with regard to nature conservation activities concerning the Nansei Islands. This marked the beginning of the Nansei Islands initiative of WWF Japan, and ever since, WWF Japan has not only consistently performed globally-relevant environmental studies of particular areas within the Nansei Islands during the 1980’s and 1990’s, but has put pressure on the national and local governments to use the findings of those studies in public policy. Unfortunately, like many other places throughout the world, the deterioration of the natural environments in the Nansei Islands has yet to stop. -
Parasitic Nematodes of Pool Frog (Pelophylax Lessonae) in the Volga Basin
Journal MVZ Cordoba 2019; 24(3):7314-7321. https://doi.org/10.21897/rmvz.1501 Research article Parasitic nematodes of Pool Frog (Pelophylax lessonae) in the Volga Basin Igor V. Chikhlyaev1 ; Alexander B. Ruchin2* ; Alexander I. Fayzulin1 1Institute of Ecology of the Volga River Basin, Russian Academy of Sciences, Togliatti, Russia 2Mordovia State Nature Reserve and National Park «Smolny», Saransk, Russia. *Correspondence: [email protected] Received: Febrary 2019; Accepted: July 2019; Published: August 2019. ABSTRACT Objetive. Present a modern review of the nematodes fauna of the pool frog Pelophylax lessonae (Camerano, 1882) from Volga basin populations on the basis of our own research and literature sources analysis. Materials and methods. Present work consolidates data from different helminthological works over the past 80 years, supported by our own research results. During the period from 1936 to 2016 different authors examined 1460 specimens of pool frog, using the method of full helminthological autopsy, from 13 regions of the Volga basin. Results. In total 9 nematodes species were recorded. Nematode Icosiella neglecta found for the first time in the studied host from the territory of Russia and Volga basin. Three species appeared to be more widespread: Oswaldocruzia filiformis, Cosmocerca ornata and Icosiella neglecta. For each helminth species the following information included: systematic position, areas of detection, localization, biology, list of definitive hosts, the level of host-specificity. Conclusions. Nematodes of pool frog, excluding I. neglecta, belong to the group of soil-transmitted helminthes (geohelminth) and parasitize in adult stages. Some species (O. filiformis, C. ornata, I. neglecta) are widespread in the host range. -
First Quantitative Ecological Study of the Hin Pae Pinnacle, Mu Ko Chumphon, Thailand
Ramkhamhaeng International Journal of Science and Technology (2020) 3(3): 37-45 ORIGINAL PAPER First quantitative ecological study of the Hin Pae pinnacle, Mu Ko Chumphon, Thailand Makamas Sutthacheepa*, Sittiporn Pengsakuna, Supphakarn Phoaduanga, Siriluck Rongprakhona , Chainarong Ruengthongb, Supawadee Hamaneec, Thamasak Yeemina, a Marine Biodiversity Research Group, Department of Biology, Faculty of Science, Ramkhamhaeng University, Huamark, Bangkok, Thailand b Chumphon Marine National Park Operation Center 1, Department of National Parks, Wildlife and Plant Conservation, Chumphon Province, Thailand c School of Business Administration, Sripatum University, Jatujak, Bangkok *Corresponding author: [email protected] Received: 21 August 2020 / Revised: 21 September 2020 / Accepted: 1 October 2020 Abstract. The Western Gulf of Thailand holds a rich set protection. These ecosystems also play significant of coral reef communities, especially at the islands of Mu roles in the Gulf of Thailand regarding public Ko Chumphon Marine National Park, being of great importance to Thailand’s biodiversity and economy due awareness of coastal resources conservation to its touristic potential. The goal of this study was to (Cesar, 2000; Yeemin et al., 2006; Wilkinson, provide a first insight on the reef community of Hin Pae, 2008). Consequently, coral reefs hold significant a pinnacle located 20km off the shore of Chumphon benefits to the socioeconomic development in Province, a known SCUBA diving site with the potential Thailand. to become a popular tourist destination. The survey was conducted during May 2019, when a 100m transect was used to characterize the habitat. Hin Pae holds a rich reef Chumphon Province has several marine tourism community with seven different coral taxa, seven hotspots, such as the islands in Mu Ko Chumphon invertebrates, and 44 fish species registered to the National Park. -
Trait Decoupling Promotes Evolutionary Diversification of The
Trait decoupling promotes evolutionary diversification of the trophic and acoustic system of damselfishes rspb.royalsocietypublishing.org Bruno Fre´de´rich1, Damien Olivier1, Glenn Litsios2,3, Michael E. Alfaro4 and Eric Parmentier1 1Laboratoire de Morphologie Fonctionnelle et Evolutive, Applied and Fundamental Fish Research Center, Universite´ de Lie`ge, 4000 Lie`ge, Belgium 2Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland Research 3Swiss Institute of Bioinformatics, Ge´nopode, Quartier Sorge, 1015 Lausanne, Switzerland 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Cite this article: Fre´de´rich B, Olivier D, Litsios G, Alfaro ME, Parmentier E. 2014 Trait decou- Trait decoupling, wherein evolutionary release of constraints permits special- pling promotes evolutionary diversification of ization of formerly integrated structures, represents a major conceptual the trophic and acoustic system of damsel- framework for interpreting patterns of organismal diversity. However, few fishes. Proc. R. Soc. B 281: 20141047. empirical tests of this hypothesis exist. A central prediction, that the tempo of morphological evolution and ecological diversification should increase http://dx.doi.org/10.1098/rspb.2014.1047 following decoupling events, remains inadequately tested. In damselfishes (Pomacentridae), a ceratomandibular ligament links the hyoid bar and lower jaws, coupling two main morphofunctional units directly involved in both feeding and sound production. Here, we test the decoupling hypothesis Received: 2 May 2014 by examining the evolutionary consequences of the loss of the ceratomandib- Accepted: 9 June 2014 ular ligament in multiple damselfish lineages. As predicted, we find that rates of morphological evolution of trophic structures increased following the loss of the ligament. -
New Records of Coral Reef Fishes from Andaman and Nicobar Islands 179 ISSN 0375-1511
RAJAN and SREERAJ : New records of coral reef fishes from Andaman and Nicobar Islands 179 ISSN 0375-1511 Rec. zool. Surv. India : 115(Part-2) : 179-189, 2015 NEW RECORDS OF CORAL REEF FISHES FROM ANDAMAN AND NICOBAR ISLANDS PT RAJAN AND CR SREERAJ Zoological Survey of India, Andaman and Nicobar Regional Centre, Port Blair-744102 Email: [email protected] INTRODUCTION 2003a, 2003b, 2007), Rao et al. (1992, 1992a, Andaman Nicobar Islands situated in the Bay 1992b, 1994, 1993a, 1993b, 1997, 2000), Rao of Bengal between 6o45´-13 45´N and 92o10´- (2003, 2009), Rao and Kamla Devi (1996, 1997a, 94o15´E, consist of 352 islands 220 islets and 1997b, 1998, 2004), Soundararajan and Dam Roy rock and cover a distance of almost 470 km over (2004), Remadevi et al. (2010) Rajaram et al. North South, with a coastline of 1962 km, and (2007), Ramakrishna et al., 2010. Smith-Vaniz, bring in for India an Exclusive Economic Zone 2011, Smith-Vaniz & Allen (2012) and Rajan and (EEZ) of 600 thousand sq km. The coast is under Sreeraj (2014). the influence of a diverse set of oceanographical MATERIALS AND METHODS and ecological conditions. The shelf topography The new records of fishes were made by field of these islands show frequent rises supporting surveys and underwater observations in the coral coral reefs, which are characterized as fringing reef ecosystem of Havelock Island, near Light reefs on the eastern side and barrier reefs off west House, 12, 02,765N / 92, 57,923 E. Fringing reef coast; the depressions are known as passages and following the contour of the land, depth from straits. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Phenotypic Variation and the Behavioral Ecology of Lizards
Phenotypic Variation and the Behavioral Ecology of Lizards The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:40046431 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Phenotypic Variation and the Behavioral Ecology of Lizards A dissertation presented by Ambika Kamath to The Department of Organismic and Evolutionary Biology in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the subject of Biology Harvard University Cambridge, Massachusetts March 2017 © 2017 Ambika Kamath All rights reserved. Dissertation Advisor: Professor Jonathan Losos Ambika Kamath Phenotypic Variation and the Behavioral Ecology of Lizards Abstract Behavioral ecology is the study of how animal behavior evolves in the context of ecology, thus melding, by definition, investigations of how social, ecological, and evolutionary forces shape phenotypic variation within and across species. Framed thus, it is apparent that behavioral ecology also aims to cut across temporal scales and levels of biological organization, seeking to explain the long-term evolutionary trajectory of populations and species by understanding short-term interactions at the within-population level. In this dissertation, I make the case that paying attention to individuals’ natural history— where and how individual organisms live and whom and what they interact with, in natural conditions—can open avenues into studying the behavioral ecology of previously understudied organisms, and more importantly, recast our understanding of taxa we think we know well. -
Studies on the Systematics and Life History of Polymorphous Altmani (Perry)
Louisiana State University LSU Digital Commons LSU Historical Dissertations and Theses Graduate School 1967 Studies on the Systematics and Life History of Polymorphous Altmani (Perry). John Edward Karl Jr Louisiana State University and Agricultural & Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_disstheses Recommended Citation Karl, John Edward Jr, "Studies on the Systematics and Life History of Polymorphous Altmani (Perry)." (1967). LSU Historical Dissertations and Theses. 1341. https://digitalcommons.lsu.edu/gradschool_disstheses/1341 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Historical Dissertations and Theses by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. This dissertation has been microfilmed exactly as received 67-17,324 KARL, Jr., John Edward, 1928- STUDIES ON THE SYSTEMATICS AND LIFE HISTORY OF POLYMORPHUS ALTMANI (PERRY). Louisiana State University and Agricultural and Mechanical College, Ph.D., 1967 Zoology University Microfilms, Inc., Ann Arbor, Michigan Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. © John Edward Karl, Jr. 1 9 6 8 All Rights Reserved Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. -STUDIES o n t h e systematics a n d LIFE HISTORY OF POLYMQRPHUS ALTMANI (PERRY) A Dissertation 'Submitted to the Graduate Faculty of the Louisiana State University and Agriculture and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Zoology and Physiology by John Edward Karl, Jr, Mo S«t University of Kentucky, 1953 August, 1967 Reproduced with permission of the copyright owner. -
Possible Aplanochytrid (Labyrinthulea) Prey Detected Using
Plankton Benthos Res 13(2): 75–82, 2018 Plankton & Benthos Research © The Plankton Society of Japan Possible aplanochytrid (Labyrinthulea) prey detected using 18S metagenetic diet analysis in the key copepod species Calanus sinicus in the coastal waters of the subtropical western North Pacific 1,†, 2,3 3,4 1 JUNYA HIRAI *, YOKO HAMAMOTO , DAISKE HONDA & KIYOTAKA HIDAKA 1 National Research Institute of Fisheries Science, Japan Fisheries Research and Education Agency, 2–12–4 Fukuura, Kanazawa, Yokohama, Kanagawa 236–8648, Japan, 2 Graduate School of Natural Science, Konan University, 8–9–1 Okamoto, Higashinada, Kobe, Hyogo 658–8501, Japan 3 Institute for Integrative Neurobiology Konan University, 8–9–1 Okamoto, Higashinada, Kobe, Hyogo 658–8501, Japan 4 Faculty of Science and Engineering, Konan University, 8–9–1 Okamoto, Higashinada, Kobe, Hyogo 658–8501, Japan † Present address: Atmosphere and Ocean Research Institute, The University of Tokyo, 5–1–5 Kashiwanoha, Kashiwa, Chiba, 277–8564, Japan Received 19 September 2017; Accepted 20 February 2018 Responsible Editor: Ryuji Machida Abstract: Metagenetic diet analyses of the 18S V9 region were conducted in 40 adult female Calanus sinicus dur- ing winter in Tosa Bay (Japan). The majority of prey items were small crustaceans (of Copepoda and Cirripedia) and diatoms, taxa that are dominant in the environment and have been previously reported as important prey items of Cala- nus. The abundance of sequences attributable to Dinophyta and Chlorophyta was significantly lower in C. sinicus gut contents than in environmental plankton communities, suggesting that C. sinicus avoids prey from these groups. Hy- drozoans were also observed, and aplanochytrids (Labyrinthulea) were detected for the first time as a major prey of C.