Published OnlineFirst May 9, 2011; DOI: 10.1158/0008-5472.CAN-10-4554

Cancer Tumor and Stem Cell Biology Research

TGFb/TNFa-Mediated Epithelial–Mesenchymal Transition Generates Breast Cancer Stem Cells with a Claudin-Low Phenotype

Michael K. Asiedu1, James N. Ingle2, Marshall D. Behrens1, Derek C. Radisky3, and Keith L. Knutson1

Abstract Breast cancer recurrence is believed to be caused by a subpopulation of cancer cells that possess the stem cell attribute of treatment resistance. Recently, we and others have reported the generation of breast cancer stem cells (BCSC) by epithelial–mesenchymal transition (EMT), although the physiologic process by which these cells may arise in vivo remains unclear. We show here that exposure of tumor cells to TGFb and TNFa induces EMT and, more importantly, generates cells with a stable BCSC phenotype which is shown by increased self-renewing capacity, greatly increased tumorigenicity, and increased resistance to oxaliplatin, etoposide, and paclitaxel. Furthermore, expression analyses found that the TGFb/TNFa-derived BCSCs showed downregulated expression of encoding claudin 3, 4, and 7 and the luminal marker, cytokeratin 18. These changes indicate a shift to the claudin-low molecular subtype, a recently identified breast cancer subtype characterized by the expression of mesenchymal and stem cell-associated markers and correlated with a poor prognosis. Taken together, the data show that cytokine exposure can be used to generate stable BCSCs ex vivo, and suggest that these cells may provide a valuable tool in the identification of stem cell-directed biomarkers and therapies in breast cancer. Cancer Res; 71(13); 4707–19. 2011 AACR.

Introduction ALDH1 positive cells (7–10). Recently, we and others (11– 13) have showed the generation of cancer stem cells through Breast cancer recurrence is believed to be caused by a induction of epithelial–mesenchymal transition (EMT), a subpopulation of cancer cells possessing stem cell attributes biological process involving coordinated molecular, bio- of tumor initiation, resistance to chemotherapy, radiation, chemical, and cellular changes resulting in the loss of and other forms of treatment (1–3). Breast cancer stem cell cell–, apical–basolateral polarity, and epithelial (BCSC) characteristics can be induced through genetic and markers, but acquisition of motility, spindle cell shape, and epigenetic mechanisms or extrinsically by microenviron- mesenchymal markers (14–16). mental stimuli, conferring many unique properties such Defining how EMT processes contribute to BCSC pheno- as ability to seed tumors at sites distant from the primary typic characteristics in vivo has been limited by the lack of tumor, resistance to apoptosis-inducing drugs, and experimental models that recapitulate the processes known to enhanced migratory and metastatic potential (3–6). Current induce EMT in vivo. Prior studies have shown that stable BCSC challenges in BCSC research include identifying unique and populations can be produced by forcing expression of key reliable molecular markers for BCSC isolation and generat- transcription factors (12). By contrast, induction with TGFb,a ing stable, homogeneous BCSCs for propagation in culture major inducer of EMT during tumor progression (14–18) had for drug screening and identifying therapeutic targets. Sev- previously led to only transient activation of BCSC character- eral techniques have been used to enrich BCSCs, including istics (12). In our previous report, we showed that in vivo þ sorting for CD24 /lowCD44 cells, selecting for side popula- generation of stable BCSCs required CD8 T cells suggesting tion cells that exclude Hoechst dyes, isolating spheroids that multiple pathways must be activated in addition to TGFb (mammospheres) from suspension cultures, or isolating (11). Given that prior studies have shown that TNFa,an inflammatory mediator associated with cell-mediated immu- nity, results in a stable EMT phenotype when used with TGF-b Authors' Affiliations: Departments of 1Immunology and 2Oncology, (17), we speculated that this combination of cytokines also 3 Mayo Clinic, Rochester, Minnesota. Department of Biochemistry and results in stable generation of cells with the BCSC phenotype. Molecular Biology, Mayo Clinic, Jacksonville, Florida To test this, we exposed breast cancer cells derived from an Corresponding Author: Keith L. Knutson, College of Medicine, Mayo Clinic, 342C Guggenheim Building, 200 First St. SW, Rochester, MN epithelial breast tumor to the cytokine combination and 55905. Phone: 507-284-0545; Fax: 507-266-0981; derived stable cell populations with BCSC characteristics. E-mail: [email protected]. Furthermore, the ex vivo generated BCSCs had characteristics doi: 10.1158/0008-5472.CAN-10-4554 of the claudin-low breast cancer subtype. These findings 2011 American Association for Cancer Research. provide key insight into BCSC development in vivo and

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establish a new in vitro experimental model for generating were analyzed on 1.5% agarose gels and imaged on a Gel Doc mesenchymal BCSCs for evaluation of characteristics and XR (Bio-Rad). First strand cDNA for quantitative PCR (qPCR) methods of therapeutic targeting. was synthesized by using the RT2 First Strand cDNA Kit (SABiosciences). and signaling pathway ana- Materials and Methods lyses were done by using RT2 Profiler PCR Array qPCR kit and detected with the RT2 SYBR Green qPCR Master Mix Cell culture and reagents (SABioscience) according to the manufacturer's protocol Mouse mammary carcinoma cell line (MMC) is an epithe- and run on ABI 7900HT with standard 96 block (Applied lial tumor cell line established from a spontaneous tumor of Biosystems). Expression analysis was conducted by using a neu-transgenic (neu-tg) mouse as previously described the manufacturer's online analysis tool and gene expression (11). Both MMCTT and ETTM were generated twice by was normalized to housekeeping genes. Differential expres- treatment of MMCs with 100 ng/mL TGFb and 50 ng/mL sion is measured as fold expression relative to the MMC TNFa for 30 and 60 days, respectively. MMCTTE cells were cell line. epithelial cells derived from MMCTT cells upon withdrawal of TGFb and TNFa treatment and subsequent culture for 30 Immunoblot analysis days. Antigen-negative variants (ANV) cells are mesenchy- Cell lysates were prepared with standard radioimmunopre- mal breast cancer stem-like tumor cell lines produced in vivo cipitation assay buffer and after determining concen- by injection of MMC cells into nontransgenic parental FVB/ tration, equal protein amounts of samples were resolved by N mice (11). Derivation of ANV5 was confirmed by using SDS-PAGE gel, transferred onto polyvinylidene difluoride fluorescent in situ hybridization of the rat neu gene and membranes, blocked with 5% nonfat milk in tris-buffered karyotyping analysis (11). MMC and ANV5 cells were tested saline and Tween 20 and incubated with primary antibody for mycoplasma by using PCR-based IMPACT Profile III test at room temperature for 4 hours or overnight at 4C. After (RADIL) and together with the in vitro derived MMCTT and incubation with appropriate horseradish peroxidase (HRP)- ETTM cell lines maintained in Roswell Park Memorial conjugated secondary antibodies in blocking buffer, protein Institute supplemented with 10% FBS, glutamate, and anti- expression was detected by using SuperSignal West Pico biotics. MCF10A cells were obtained from American Type Chemiluminescent Substrate (Pierce). Primary polyclonal Culture Collection (ATCC; Manassas) and immediately antibody to E-, N-adherin and b-actin-HRP, and resuscitated and expanded in Dulbecco's modified Eagle's secondary antibodies were purchased from Santa Cruz (Santa medium (DMEM)/F12 medium containing 5% horse serum, Cruz Biotechnology). Anti-b-actin was used as a loading epidermal growth factor (EGF), insulin, hydrocortisone, and control. antibiotics. ATCC conducted authentication on MCF10A cell lines through short tandem repeat profiling, karyotyping, Mammosphere formation assay and cell imaging and cytochrome c oxidase I testing. Test for bacterial and For mammosphere formation, MMC, MMCTT, ETTM, fungal contamination was carried out by ATCC by using MCF10A, and MCF10ATT cell lines were grown in 4 mL current United States Pharmacopeia methods for viral test- DMEM/F12 media with 1:50 B27 (Invitrogen), 20 ng/mL ing adhering to United States Code of Federal Regulation (9 EGF, 20 ng/mL, 10 mg/mL insulin, penicillin, streptomycin, CFR 113.53) guidelines, mycoplasma testing via direct cul- and amphotericin B in 12-well plates at a density of 5,000 cells/ ture and Hoechst DNA staining and Limulus amoebocyte mL as described previously (19). Additional 0.5 mL of media lysate assay to measure endotoxin values. The cells were was added every 3 days for 15 days. The number of mammo- then split when enough cells were obtained and then imme- spheres formed were observed and counted under a Leica DC diately treated with the cytokines or frozen as seeding 200 microscope (Leica Microsystems). Images of spheroids stocks. All cell lines were treated with Placmocin (Invivo- and adherent cells were obtained with a Leica DC 200 micro- Gen) every 2-weeks to prevent mycoplasma contamination. scope (Leica Microsystems) and Fujifilm FinePix 6800 Zoom MCF10ATT cells were generated in duplicate by treatment of camera (Fujifilm). MCF10A cells with same doses of TGFb and TNFa for 40 days. TGFb and TNFa were purchased from R&D System (St Flow cytometry and cell sorting Paul). Cell surface expression of E-cadherin, N-cadherin, CD24, and CD44 on MMC, MMCTT ETTM, MCT10A, and RNA isolation, RT-PCR, and qPCR MCF10ATT cells was determined by flow cytometry analysis Total RNA was purified from cells by using RNeasy Plus kit on a FACScan (Becton Dickinson). Cells were incubated (Qiagen). RNA quantity and purity were determined by using a with conjugated or nonconjugated primary antibodies at NanoDrop ND-1000, and RNA integrity was assessed by 4C for 30 minutes, washed, and then stained with secondary determining the RNA integrity number and 28S/18S ratio antibody for 30 minutes. The cells were then fixed with by using a Bioanalyzer 2100 (Agilent Technologies). PCR washing buffer containing 0.5% formaldehyde and run on a primers were designed with PrimerQuest (IDT, Inc.). Reverse BD FACScan flow cytometer (Becton, Dickinson and Com- transcription-PCR (RT-PCR) was carried out by using Super- pany). Sorting of CD24 /CD44+ cells was done on a BD Script One-Step RT-PCR with Platinum Taq (Invitrogen) by FACSVantage Cell Sorter, and data were analyzed by using using 200 ng of RNA in a Bio-Rad MyCycler. PCR samples WinMDI version 2.8 software (http://en.bio-soft.net/other/

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WinMDI.html). Antibodies used included anti-CD24 PE ANOVA was carried out to determine statistically significant (eBioscience), anti-E-cadherin phycoerythrin (PE), anti-E-cad- difference. P < 0.05 was considered as significant. herin fluorescein isothiocyanate (FITC) and anti-CD44 FITC (BD Pharmingen), and anti-N-cadherin (Santa Cruz Biotech- Results nology). Secondary antibody FITC goat anti-rabbit IgG were from Jackson ImmunoResearch Laboratories. Isotype antibo- TGFb and TNFa generate mesenchymal tumor cells dies were PE Rat IgG2b (eBioscience) and FITC Rat IgG2b with BCSC characteristics (BD Pharmingen). We previously isolated MMCs from tumors developing in neu-Tg mice (20). We found that MMC cells had epithelial cell In vivo tumorigenicity characteristics and rapidly formed tumors when reinjected Female neu-tg mice on the FVB/N background were main- into neu-tg mice, but when injected into syngeneic wild-type tained as a colony and in vivo tumorigenicity assays were mice, showed an immune-mediated initial delay followed by conducted according to Institutional Animal Care and Use rapid development of tumors which had undergone EMT and Committee (IACUC) policy. Appropriate numbers of MMC, had lost expression of the neu antigen, generating ANVs (11, MMCTT, and ETTM cells were injected subcutaneously into 20). We sought to define a culture model of the MMC/ANV the mice and tumor size measured until the mice were conversion process, and focused on TGFb and TNFa as key sacrificed. Tumors were measured every other day with ver- immunologic agents. When MMC cells were cultured with nier calipers, and volumes were calculated as the product of TGFb and TNFa for extended periods, they were converted to length width height 0.5236. stable mesenchymal cells (named ETTM cells), showing the characteristic change in cell morphology from rounded to In vitro cell migration and invasion assay elongated, consistent with EMT (Fig. 1A), which was accom- Migration of MMC and ETTM cells were assessed by using panied by loss of expression of the epithelial marker, E- noncoated membrane transwells (24-well insert; pore size, 8 cadherin, and a gain in expression of mesenchymal markers, mm; BD Biosciences). About 5 104 cells suspended in serum- N-cadherin, Snail, Twist, and Zeb1 (Figs. 1A–C). At earlier time free medium were plated in the top chamber, and medium points of treatment with TGFb/TNFa, the cells showed an supplemented with serum was used as a chemoattractant in intermediate phenotype (named MMCTT cells) where the lower chamber. The invasion assay was conducted as although the cells had acquired mesenchymal features, gene described for migration assay by using 1.5 105 cells and expression analysis by immunoblot, RT-PCR, and flow cyto- Matrigel-coated membrane (24-well insert; pore size, 8 mm; BD metry showed only a partial loss of E-cadherin and partial gain Biosciences). After 24 hours of incubation, cells remaining on of N-cadherin suggesting incomplete EMT (Figs. 1A and B). top of the membrane and not migrating were removed by Although removal of TGFb/TNFa from the culture media led using a cotton swab. Migrated cells on the lower surface of the to reversion of MMCTT cells to an epithelial phenotype membrane were stained with Hema 3 Stain (Fisher Scientific), (named MCTTE cells), the ETTM cells showed a complete photographed, and counted. and stable conversion. To assess the ability of ETTM cells to redifferentiate in vivo, they were injected into neu-tg mice and Chemotherapy and cytotoxicity assays after tumor formation, removed and reassessed for expression Etoposide and paclitaxel were from Selleck Chemical; of EMT markers. We found that the tumors expressed both E- oxaliplatin was purchased from Sigma Aldrich). Chemore- and N-cadherin indicating that, despite the stable culture sistance of MMC and ETTM cells was determined by mea- phenotype, they were able to reestablish heterogeneous suring cell viability by using the Xcelligence system (Roche tumors with epithelial characteristics. Interestingly, the cells Applied Science). The instrument measures cell status (given isolated from these tumors, when replated in culture, readily as cell index) in a form of electrical impedance which is reverted to a mesenchymal phenotype (i.e., N-cadherin posi- determined by cell morphology,celladhesion,andcell tive and E-cadherin negative), similar to the injected ETTM viability. As cells attach to the bottom of the plate coated cells suggesting that the cells possess both the ability to with electrodes, a change in local ionic environment occurs differentiate into E-cadherin expressing epithelial cells as well resulting in increased impedance. Measurements were car- as maintaining strong self-renewal capacity (Fig. 1D). ried out according to the instructions of the supplier. After TGFb/TNFa-mediated EMT was further confirmed by seeding 100 mL of suspension of 20,000 MMC and ETTM cells evaluating EMT genes by PCR pathway analysis. The results into the 16-well of the E-plates, the cell index was taken showed differential expression of EMT genes including every 5 minutes for about 18 hours for the cells to reach log higher levels of Col1a2, Col3a1, Col5a2, MMP9,andMMP3, phase. The cells were then exposed to increasing doses of whereas epithelial genes like Ocln, Erbb3, Tspan13,andBmp7 oxaliplatin, paclitaxel, and etoposide and the cell index read were reduced in ETTM cells (Fig. 1E). Overall, these results again for additional 60 hours. show exposure of MMC tumor cells to TGFb,andTNFa results in the generation of stable mesenchymal cells cap- Statistical analysis able of reestablishing heterogeneous tumors with epithelial Statistical analysis was conducted by using GraphPad Prism characteristics. version 4.00 for Windows (GraphPad Software). Two-tailed Because EMT induction by overexpression of Snail, Twist, Student's t-test, the Mann–Whitney U test, or the 2-way or K-ras resulted in generation of cell populations with BCSC

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Figure 1. TGFb with TNFa generates tumor cells with a stable EMT phenotype that form heterogeneous tumors in vivo. A, photomicrograph (top) and flow cytometry analysis (bottom) of epithelial MMC and mesenchymal MMCTT and ETTM cells. B, RT-PCR of mRNA isolated from MMC, MMCTT, MMCTTE, ETTM, and ANV5 cells by using primers specific for E-cadherin, N-cadherin, Zeb1, Twist, Snail, and GAPDH. ANV5 is a stable BCSC cell line derived in our prior studies (11). C, immunoblot of cells in (B) showing expression of E-cadherin, N-cadherin, and b-actin. D, flow cytometry analysis of N-cadherin and E-cadherin on ETTM cells, ETTM primary tumor, and cultured cells. E, expression of EMT-associated genes by qPCR analysis.

characteristics in prior studies, we questioned whether TGFb/ MCTTs, and 100% in the ETTMs (Fig. 2A). The observation þ TNFa-generated mesenchymal cells also have these BCSC that 33% of MMCs were CD24 /lowCD44 despite a poorer characteristics, such as enhanced self-renewal, a CD24 /low- mammosphere forming efficiency suggests that many of the þ CD44 phenotype, ability to potently establish heterogeneous CD24-/CD44þ cells are not mammosphere-forming cells, tumor, and resistance to chemotherapy (7, 11, 12). Self- which is consistent with the work of Al-Hajj and colleagues þ renewal was examined by assessing for an increased ability also showing that only a subset of human CD24 /lowCD44 of the MMCTT (incomplete transition) and ETTM cells to cells are BCSCs (7). form mammospheres compared with the MMCs. The results By using the mixed epithelial and mesenchymal tumor showed that ETTM cells were the most efficient in mammo- cell line, MMCTT, we evaluated the morphology and mam- þ þ sphere formation, producing more compact and rounded mosphere formation efficiency of isolated CD24 /CD44 þ spheroids than MMCTT cells. MMCs, in contrast, were least and CD24 /CD44 subpopulations to confirm that the efficient in forming mammospheres (Fig. 2A). Representative mesenchymal and self-renewing phenotype is associated þ þ staining for CD24 and CD44 showed that the CD24 /lowCD44 with the CD24 /CD44 subset. Results in Figure 2B show þ population within cultures increased with combined TGFb that only CD24 /CD44 cells had a mesenchymal pheno- and TNFa treatment from 33% in the MMCs, to 77% in the type and effectively formed mammospheres (Fig 2b).

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A MMC MMCTT ETTM 200 *** 150

100 ***

50

0 MMC MMCTT ETTM Number of mammospheres

CD24 Cell type D CD44 500 B 0 CD24+/CD44+ CD24–/CD44+ –500

–1,000 Fold regulation Fold –1,500 Claudin 3 Claudin 4 Claudin 7 Claudin 9 Keratin 18 Keratin E 2,500 2,000 1,500 1,000 500 50 C 0 Fold regulation Fold –50 ETTM cultured ETTM tumor cells –100 ETTM cells tumor cells –150 CD4 ISL1 DHH IGF1 MME DLL3 DLL1 JAG1 GJA1 FZD1 GJB1 FGF2 DTX1 CDH2 CDH1 CCNA2 CDC2A ABCG2 CCND2 CCND1 NCAM1 COL1A1 COL9A1 NOTCH1 ALDH1A1

CD24 Stem cell genes

CD44

Figure 2. Generation of BCSCs by TGFb and TNFa. A, top left, photograph of mammospheres formed by MMC, MMCTT, and ETTM cells. A, top right, graph of the mean and SEM (n ¼ 6) of mammospheres formed by MMC, MMCTT, and ETTM cells. ***, P < 0.05. A, bottom left, flow cytometry analysis of coexpression of CD24 and CD44 on MMC, MMCTT, and ETTM cells. B, photograph of adherent cells and mammospheres formed by CD24þ/CD44þ and CD24/CD44þ of MMCTT cells. C, flow cytometry analysis showing expression of CD24 and CD44 on ETTM cells, freshly isolated ETTM tumor cells and cultured ETTM tumor cells. D, real-time PCR by using gene-specific primers detect gene expression of Keratin 18, claudin 3, 4, 7, and 9. Error bars represent SD of 2 independent experiments. E, gene expression analysis of stem cells genes by using qPCR profiler arrays. Errors bars represent SD of 2 independent experiments.

Staining of tumor cells isolated from ETTM-induced tumors Figure 1D, the cultured tumor cells also reverted entirely þ þ þ þ showed CD24 /CD44 and CD24 /CD44 populations. to the CD24 /CD44 cells phenotype suggesting that the Consistent with showing that cultures of ETTM-generated ETTM cells have the ability to differentiate and to self-renew tumor cell reverted to mesenchymal cells as shown in (Fig. 2C).

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A recently identified molecular subtype of breast cancer, associated genes, including Col1a1, Fgf2, Ccnd2, Igf1, Notch1, claudin-low, is associated with increased expression of ABCG2 in the ETTM cells (Fig. 2E). mesenchymal markers and correlates with poor prognosis (21, 22). Additionally, residual subpopulations of breast cancer TGFb/TNFa-mediated EMT in human MCF10A cells cells that evade chemo- and endocrine therapy, in humans, generates mesenchymal cells with a stem cell-like have a claudin-low and BCSC phenotype characterized phenotype by reduced levels of claudin 3, 4, and 7, enrichment of To determine whether TGFb/TNFa-induced EMT in þ CD24 /lowCD44 cells, and increased expression of stem human epithelial mammary cells can generate stem cell- cell-related genes (23). Parallel to these studies, we observed like cells, we treated normal human mammary epithelial that ETTM cells have considerably reduced expression of MCF10A cells with the cytokines for 40 days, giving rise to claudin 3, 4, and 7 and the luminal marker KRT18, relative MCF10ATT cells. As expected, exposure to TGF and TNF led to the parental MMC tumor cells (Fig. 2D). Furthermore, to acquisition of mesenchymal phenotype accompanied by pathway analysis showed enriched expression of stem cell- upregulation of mesenchymal genes (such as Vimentin,

A MCF10A MCF10ATT D

300 200 100 20

0

–20 Fold regulation Fold B –1000 100 –2,000 CD4 B2M ISL1 DHH ALPI DLL3 DLL1 GJA1 GJB2 DTX2 FGF1 TERT SOX2 CD8A CDC2 CDH1 BMP2 BMP3 ADAR CDH2 AXIN1 KRT15 FOXA2 ALDH2 HPRT1 CCND2 COL1A1 COL2A1 NOTCH1 50 Stem cell genes 20 0 –20 E MCF10A MCF10ATT –40

Fold regulation Fold –60 –1,000 –2,000 –3,000 VIM FN1 GSC F11R PTK2 CAV2 ESR1 DSC2 CDH1 CDH2 BMP7 RGS2 TFPI2 VCAN OCLN IL1RN MMP2 SNAI1 TIMP1 KRT19 KRT14 HPRT1 FOXC2 ERBB3 SPARC MST1R MAP1B WNT5B TWIST1 COL5A2 COL3A1 STEAP1 FGFBP1 NOTCH1 PDGFRB TSPAN13 SERPINE1 TMEM132A EMT genes C MCF10A MCF10ATT F 500 *** 400 300 200 CD24 100 0 No. of mammospheres No. MCF10A MCF10ATT CD44 Cell type

Figure 3. Human immortalized breast epithelial cells exposed to TGFb and TNFa undergo EMT and acquire BCSC phenotype. A, photograph of adherent epithelial MCF10A cells and mesenchymal MCF10ATT cells (MCF10A cells grown in TGFb and TNFa for 40 days). B, fold regulation plot of EMT- associated genes in MCF10ATT cells assessed by qPCR by using MCF10A cells as a reference. Errors bars represent SD of 2 independent experiments. C, flow cytometry analysis of cell surface expression of CD24 and CD44 on MCF10A and MCF10ATT cells. D, fold regulation plot of stem cell genes by qPCR using profiler arrays using MCF10A as reference. Errors bars represent SD of 2 independent experiments. Photograph (E) and quantification (F) of mammospheres formed by MCF10A and MCF10TT cells. Each bar is the mean (SEM) of 6 replicates.

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Sparc, Foxc2, and CDH2) and downregulation of epithelial more than 100-fold mammospheres compared with the markers (CDH1, Krt14, and Ocln) as shown by real-time MCF10A cells. qPCR analysis (Fig. 3A and B). We then evaluated the BCSC properties of the MCF10ATT cells by flow cytometry of Regulation of EMT and stem cell-associated genes in CD24 and CD44 expression. We observed that all the ETTM cells þ MCF10ATT cells were CD24 /CD44 compared with the To further assess the BCSC characteristics of the ETTM cells, þ þ MCF10A cells which were mainly CD24 /CD44 (Fig. 3C). pathway analysis of transcription factors and signaling path- Real-time qPCR pathway analysis also showed differential ways associated with cancer stem cells such as regulation of stem cell gene (Fig. 3D). To assess the self- genes, TGFb, Notch, and Hedgehog signaling pathways were renewal ability of the EMT generated MCF10ATT cells, we carried out (24–26). These analyses revealed increased expres- examined their mammosphere-forming capacity compared sion, in ETTM relative to MMC, of Homeobox-containing genes with the parental MCF10A cells. As shown in Figure 3E and such as Dlx1, Hoxc8, and Hoxa9 as well as lower levels of F, we found that the stem cell-like MCF10ATT cells were Hoxd13, Pdx1, and Pitx1 (Fig. 4A). TGFb/BMP signaling genes more efficient mammosphere forming units generating including TGFB1, Col1a1, Serpine1, TGFB2, and Igfbp3 were

AB 80 60 40 60 20 0 40 –20 20 –200

–250 Fold regulation Fold 0 regulation Fold

–300 –20 –350 VAX2 DLX4 DLX1 DHH GLI3 PDX1 MSX2 EMX2 PITX1 FGF9 MEIS1 GAS1 BTRC BMP4 WNT6 DISP1 NUMB HOXA9 HOXB9 HOXA7 HOXB3 HOXC6 HOXC9 MEOX1 FKBP8 SFRP1 MTSS1 GSK3B RUNX2 WNT9A WNT5B WNT5A CTNNB1 FBXW11 WNT10A PRKACB Homeobox genes Hedgehog signalingCSNK1G1 genes

CD300 500 250 200 400 150 40 40 20 20 0 0 –20

Fold regulation Fold regulation Fold –50 –100 –100 –150

–200 –200 HR ID1 FST AES JUN FOS FIGF DLL1 JAG1 PLAT FZD4 FZD5 FZD1 FZD6 FZD3 FZD6 LRP5 NBL1 HEY1 HES1 PLAU SOX4 BMP1 BMP4 STAT1 ITGB7 SEL1L LTBP1 WISP1 BAMBl INHBB INHBA FOSL1 NR4A2 CFLAR PSEN1 PSEN2 TGFB3 TGFB2 TGFB1 PPARG CCNE1 SMAD3 BMPER IGFBP3 FKBP1B COL1A2 COL3A1 COL1A1 ADAM10 CTNNB1 TGFBR2 CDKN1A NOTCH3 NOTCH1 NOTCH4 CDKN1A SMURF1 SERPINE1 TGF-β BMP signaling genes Notch signaling genes

Figure 4. Regulation of EMT and stem cell-associated genes in ETTM cells. A, gene expression analysis of Homeobox genes showing upregulation of Dlx1, Hoxc9, Hoxc8, and Hoxa9. B, qPCR pathway array analysis shows regulation of genes involved in TGFb/BMP signaling pathway. C, assessment of regulation of Hedgehog signaling genes showing differential regulation of Wnt6, Wnt10A, Gas1, Wnt5a, , Ptch1, PtcgD2, and Wnt5b. D, qPCR gene expression analysis detects upregulation of Wisp1, Fosl1, Notch4, and downregulation of Notch3 and Hey1. Error bars represent SD of 2 independent experiments.

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differentially expressed (Fig. 4B), whereas analysis of Hedgehog ETTM cells show altered expression of breast cancer and Notch signaling genes identified differential expression of and cell survival pathways Wnt6, BMP4, Wnt10a, Gas1, Gli3, Ptchd2, Ptch1 Wisp1, Notch4, A number of signaling pathways including chemokine path- Fosl1, Fzd1, Notch3, and Hey1 (Fig. 4C and D). These observa- ways have a role in breast cancer pathogenesis. Studies have tions indicate widespread regulation of stem-associated genes shown a correlation between chemokine-secreting tumor- in ETTM BCSCs. Overall, these observations together show that infiltrating macrophages and poor prognosis of breast cancer TGFb/TNFa mediate EMT leading to the generation of CD24 / (32, 33). Assessment of chemokine receptor signaling genes in þ CD44 cells BCSCs with a claudin-low phenotype. ETTM showed increased expression of Ccl13, Cxcr7, Ccl11, Cxcl12, and Tnf as well as downregulation of Cxcr4 relative to TGFb/TNFa-mediated EMT results in increased tumor MMC (Fig. 7A). We also observed higher amounts of inflam- aggressiveness matory cytokines and receptor genes Ccl2, Ccl5, Ccl6, Ccl7, Mesenchymal BCSCs are known to have increased aggres- Ccl8, Ccl11, Ccr1, Ccr7, and Il1r1 but lower Ccr3, Cxcl1, Il1f6, siveness relative to epithelial tumor cells. Important charac- and Ccl20 (Fig. 7B). In breast cancer, expression of estrogen teristics include high tumorigenicity nature as well as receptors is both a predictive and prognostic marker as well as enhanced migration, invasion, and chemoresistance (12, 13, an effective means of targeting hormone-dependent breast 27). Consistent with their mesenchymal phenotype, ETTM cancers (34). Gene analysis of breast cancer cells showed enhanced migration and invasion compared with signaling identified differential expression of Thbs2, Serpine1, MMCs (Fig 5A). Relative to MMC and MMCTT, ETTM cells Serpineb5, Cldn7, Krt18, and Kit genes (Fig. 7C). Cell cycle were also much more tumorigenic than the MMCTTs (Fig. 5B). regulators are implicated in cancer initiation, progression, and Furthermore, serial dilution of the ETTM cells showed ability resistance to therapy, and were also found to be differentially to form tumors with as low as 100 cells compared with the expressed in ETTM (Fig. 7D; ref. 35). Finally, higher levels of MMCs which could only form tumors at high cell numbers angiogenesis genes were observed with generation of ETTM (ref. 11; Fig. 5C). cells (Fig. 7E). The results of these gene expression analyses of þ Human CD24 /lowCD44 BCSCs are known to have a breast cancer and cell survival-associated pathways supports metastatic gene signature and are associated with a poor the genotype and phenotype of the ETTM cells as BCSCs. prognosis (28). Analysis of expression of metastasis-associated genes in ETTM cells revealed higher levels of Ccl7, Mmp13, Discussion Mmp9, Mmp3, Cdh11, Hgf, Mmp10, Ctsk, and Cdh6 as well as lower levels of Mcam and Tnfsf10, as compared with MMC The key BCSC characteristics are increased tumorigenicity, (Fig. 5D). In addition, assessment of oncogenes and tumor ability to reconstitute a heterogeneous tumor, self-renewal, suppressor gene expression signatures showed higher expres- and resistance to therapies. We have shown here that treat- sion of S100a4, Tnf, kitlg, , Mycn, and Est1 as well as lower ment of epithelial MMCs with TGFb/TNFa generates stable levels of Myb, Serpinb5, Cdh1, and Kit (Fig. 5E). Overall, these mesenchymal BCSCs, which have increased expression of results showed that ETTM cells, like previously reported CSCs, mesenchymal markers such as N-cadherin, Snail, Slug, Twist, are substantially more aggressive than their epithelial differ- Zeb1, Mmp3, and Mmp9. Different cancer cell lines have entiated counterparts. different degrees of sensitivity and resistance to TGFb- induced EMT (36–40). The incomplete and reversible EMT ETTM BSCSs are chemoresistant observed in MMCTT cells, in contrast to complete and stable A clinically important attribute of CSCs is their resistance to ETTMs, generated from the cell epithelial MMC cells present conventional therapies such as chemotherapy (2, 29). Prior an intriguing observation, suggesting that although EMT can þ works by us and others have shown that CD24 /lowCD44 begin within a few days of exposure to cytokine, complete BCSCs have elevated levels of drug pumps and DNA repair EMT involves not only early regulation of actin cytoskeleton as , thereby conferring profound resistance to chemo- evident in cell morphologic changes, but is associated with and radiotherapies (11, 30). To assess the resistance of ETTM regulation of a plethora of genes and activation of an array of and MMC cells, they were treated with increasing doses of molecular pathways leading to a transformation of epithelial oxaliplatin, aclitaxel, and etoposide (11) and growth measured cells to more migratory and invasive mesenchymal cells. Thus, in real-time (31). As shown in Fig. 6A–C, BCSCs generated with EMT may not be a rapid but rather a long-term process TGFb/TNFa were more resistant to chemotherapy as com- involving regulation of many genes which act in concert to pared with epithelial MMC. produce the profound observed cellular, molecular, phenoty- Analysis of drug resistance genes showed increased expres- pic, and functional changes. sion of ABC transporter genes, Abcb1b, Abcc3, and Abcc5,as The generation of BCSCs by treatment with TGFb/TNFa well as resistance genes Hif1a, and Pparg but lower levels of suggests that factors secreted by the immune system play an Erbb3 and Tnfrsf11a (Fig. 6D). Analysis of apoptotic genes important role in breast cancer progression, which is consis- showed higher expression of Bcl2l2, Birc3, and Traf1 genes but tent with our prior in vivo studies (11). It also implicates decreased expression of Bcl2, Bcl2l1, Mme5, and Dapk1 (Fig inflammation-induced EMT in cancer metastases and recur- 6E). DNA damage and repair signaling such as P53, Rad9b, and rence. TGFb is a potent growth inhibitor which normally Rad51L1 were higher whereas Gadd45a, Rad50, and Rad54l1 functions to regulate aberrant growth of epithelial and were lower (Fig. 6F). hematopoietic cells (41). However, TGFb can also induce

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AC MMC ETTM 800 10,000 Cells MIGRATION 1,000 Cells

) 4/4 3 100 Cells 600 4/4

400

INVASION 200

Tumor volume (mm volume Tumor 2/4

0 0102030 Time (days)

D 15,000

10,000 150 Migration Invasion 5,000 P = 0.0022 100 P = 0.0022 100 50 Fold regulation Fold 50 0

cells per exposure –50 No. of migrating or invading of migrating No.

0 FN1 MET HGF IGF1 FLT4 CSF1 CD82 CCL7 CTSK CDH1 MMC ETTM MMC ETTM CDH6 MMP7 MMP9 MMP3 TIMP4 TIMP3 TIMP2 MCAM TGFB1 CDH11 EPHB2 MTSS1 MMP10 MMP11 MMP13 HTATIP2 Metastases genes TNFSF10 B E ETTM 200 150 1,000 MMC 100 )

3 MMCTT 800 50 20 10 600 0 –10 400 –20 Fold regulation Fold –500

Tumor volume (mm volume Tumor 200 –1,000

0 KIT NF1 NF2 TNF JUN PML FOS MET HGF MYB HIC1 JAK2 BCL2 AKT1 ETS1 MLH1 CDH1 0102030 40 KRAS MEN1 STAT3 KITLG IGF2R ERBB2 RUNX3 PIK3CA S100A4 NFKBIA BCL2L1 CTNNB1 CDKN1A PIK3C2A

Time (days) SERPINB5 Oncogenes and tumor suppressor genes

Figure 5. ETTM cells are highly migratory, invasive, and tumorigenic. A, top, photomicrograph of MMC and ETTM cells that have migrated and invaded through uncoated or Matrigel-coated transwell plates, respectively. A, bottom, quantification of migrated and invaded cells showing statistically significant differences between MMC and ETTM cells. B and C, mean ( SEM; n ¼ 5) tumor sizes over time (days) following implantation of 100,000 MMC, MMCTT, and ETTM cells as well as serial dilution of ETTM cells showing high tumorigenicity of ETTM cells and the ability to form tumors at 100 cells. The inset fraction represents the number of mice with tumors in this experiment. For both the 10,000 and 1,000 cell doses, the variability was so minor that the error bars are obscured by the symbols. D and E, gene expression analysis of metastases, oncogenes and tumor suppressor genes showing differential regulation of metalloproteases and adhesion genes such as Mmp13, Mmp9, Mmp3, Cdh1, cdh66, and Cdh11.*,P < 0.05. Error bars represent SD of 2 independent experiments. proliferation and invasiveness in cancer cells that have evaded progression at different stages of tumor development has not the inhibitory effect of TGFb signaling through activation of been completely elucidated, induction of EMT or at least specific biological processes (42). Although the mechanism by regulation of mesenchymal genes could be 1 possible scenario. which TGFb can alternatively suppress and promote cancer Furthermore, the simultaneous expression of immune factors

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AD 2.5 120 Oxaliplatin 100

2.0 MMC-DMSO 80 ETTM-DMSO 60 1.5 ETTM-15μM 20 0 ETTM-20μM Fold regulation Fold 1.0 –20 Cell index

MMC-15μM –40 0.5 MMC-20μM –60 XPC FOS MET BCL2

0.0 RXRB IGF2R TOP2A ABCB1 ERBB3 ABCC3 ABCC5

0102030 40 BCL2L1 ABCB1B Time (hrs) Drug resistance genes TNFRSF11A B E 40 2.0 45 Hrs 60 Hrs 20 1.5 0 1.0 –20 Cell index Fold regulation Fold 0.5 –40

–60 0.0 O

C-6mM C-12mM BOK MM MMC-6mM API5

ETTM-6mM ETTM-6mM TP63 MMC-12mM MM BCL2 MMC-DMSO MMC-DMSO MMC-12mM POLB ETTM-12mM NME5 BNIP3 BNIP2

ETTM-DMSO ETTM-DMS BIRC3 TRAF1 TRAF1 FASLG DAPK1 CFLAR CASP6 CASP4 BCL2L2 Etoposide treatment Apoptosis genes C F 2.0 45 Hrs 10 60 Hrs 1.5 0

1.0 –10 Cell index 0.5

–20 Fold regulation Fold 0.0

nM

C-15nM –30 XPC LIG3 POLI MM MMC-20nM MMC-15nMMMC-20nM TP53 CRY2 MLH1 EXO1 MMC-DMSO MMC-DMSO ETTM-DMSOETTM-15ETTM-20nMETTM-DMSOETTM-15nMETTM-20nM POLH APEX2 TOP3B POLD3 RBBP4 RAD9B SMC1A SUMO1 SMUG1 RAD54L RAD23A RAD51L1 GADD45A Paclitaxel treatment DNA damage and repair signaling genes

Figure 6. ETTM stem cells are resistant to oxaliplatin, etoposide, and paclitaxel. A, real-time measurement of MMC and ETTM cell growth (cell index) following treatment with oxaliplatin over a period of 40 hours. Lines are the means of 3 replicates. B and C, treatment of MMC and ETTM with different doses of etoposide and paclitaxel for 45 or 60 hours showing resistance to cell death by ETTM cells as measured by electrical impedance. Bars are the mean (SEM) of 3 replicates. D and E, qPCR pathway array analyses of drug resistance and apoptosis genes. F, qPCR pathway array analyses of DNA damage and repair genes. D–F, error bars represent SD of 2 independent experiments.

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TGFb/TNFa and BCSCs

AD 1,000 150 100 500 50 20

10 20 0 0 –10 Fold regulation Fold regulation Fold –100 –20 –100 –200

–150 MYB LIF TP53 TP63 SKP2 TNF IL18 IL1A WEE1 DDIT3 PMP22 GDF5 SLIT2 BDNF CCR7 RGS3 RGS3 SUMO1 INHBB CCL13 CCL11 CXCL1 CCRL1 CXCR7 CMTM6 CAMK2B CXCL12 CXCL11 CXCL10 DNAJC21 PPP2R3A B E GADD45A Chemokine receptor genes Cell cycle genes 1,500

1,000 400

500 300 40 20 200 0

–1,000 100 Fold regulation Fold regulation Fold

0 –1,500

–100 C3 TNF IL18 IL11 IL1A BCL6 CCL9 CCL5 CCL8 CCL7 IL1F6 IL1R1 CCR1 CCR7 IL2RB TNF ITGB2 IL2RG PGF CCL25 CCL20 CCL11 CXCL1 FIGF CASP1 IL10RB TOLLIP CSF3 PLAU NRP1 CTGF CXCL10 CXCL12 CXCL11 EREG IL13RA2 MMP9 ITGB3 TIMP1 TIMP2 EPAS1 CCL11 LECT1 TGFB3 TGFB2 CXCL1 PTGS1 ANPEP VEGFC PLXDC1 ANGPT2 COL18A1

C Inflammatory cytokines and receptor genes SERPINF1 Angiogenesis genes 3,000 2,000 1,000

40 20 0 –20 –40 Fold regulation Fold

–500

–1,000 KIT GSN BCL2 DLC1 LCN2 PLAU TGFA CDH1 ITGB4 GATA3 KRT18 FOSL1 THBS2 CLDN7 PTGS2 GABRP COL6A1 CTNNB1 SERPINB5 SERPINE1 Breast cancer and estrogen receptor signaling genes

Figure 7. Breast cancer and stem cell-associated genes are regulated in ETTM cells. qPCR analysis of chemokine receptor genes (A), inflammatory cytokine and receptor genes (B), breast cancer and estrogen signaling genes (C), and cell cycle and angiogenesis genes (D and E) shows differential regulation of these signaling pathways in ETTM BCSCs compared with non-BCSC parental cells. Error bars represent SD of 2 independent experiments. and receptors may deregulate immunity and allow the CSCs to The ability of the BCSCs to interconvert between the þ þ þ subvert immune-mediated elimination, thereby permitting CD24 /lowCD44 BCSCs and CD24 /CD44 tumor cells, long-term survival, which would be consistent with long-term as shown by dedifferentiation of epithelial cells or recurrence risk among treated breast cancer patients. through selection in culture presents a unique model for

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understanding how to inhibit the growth and regeneration cells and suggests that targeting proteins involved in the of BCSCs (43). Identificationofcellsurfacemarkers induction or survival of this subtype could be a therapeutic of BCSCs for accurate identification and isolation is essen- strategy for improving survival of breast cancer patients tial if BCSC research is to make an impact in patient regardless of the primary subtype. care. In addition, identification of functionally relevant In conclusion, this study provides new information on the biological targets for development of monoclonal antibo- role of the cytokines, TGFb and TNFa in EMT. It also provides dies or small molecule inhibitors to target BCSCs in com- initial evidence linking immunity (i.e., cytokines) to the gen- bination with conventional treatments could provide the eration of the BCSC through EMT. The ex vivo generation of breakthrough needed to minimize metastatic recurrence of BCSCs cells with cytokines may enable a better understanding breast cancer. of the biology of CSC, identification of definitive biomarkers, We observed upregulation of signaling pathways linked to and the discovery of biological targets and pathways for stem cells including Homeobox, hedgehog, TGFb/BMP, development of effective therapies. It could also be useful Notch, and chemokine and chemokine receptors. These path- for drug screening to determine the effectiveness and required ways are subjects of ongoing research to identify possible doses of CSC-targeted therapies. targets. Chemoresistance to cytotoxic drugs such as oxalipla- tin, etoposide, and paclitaxel is a crucial property of CSCs Disclosure of Potential Conflicts of Interest which is central to their survival and evasion. The robust chemoresistant and regulation of genes and pathways asso- No potential conflicts of interest were disclosed. ciated with stemness and survival underscores the major problem posed by CSCs, specifically their ability to be eradi- Acknowledgment cated with existing therapeutic modalities. The authors acknowledge the strong support of the Mayo Clinic Compre- There is increasing evidence of the importance of EMT in hensive Cancer Center for providing access to core facilities. the generation of the claudin-low subtype (22). The claudin- low subtype is a recent addition to the 4 major subtypes of Grant Support breast cancer, namely luminal A, luminal B, basal like, and ERBB2 positive subtypes (44). This new subtype exhibits stem This work was supported by a generous gift from Martha and Bruce Atwater cell characteristics with increased expression of immune (K.L. Knutson); Howard Temin Award, K01-CA100764 (K.L. Knutson); R01- CA122086 (D.C. Radisky); and the Mayo Clinic Breast Cancer Specialized response genes, EMT genes, and lower expression of luminal Program of Research Excellence Award, P50-CA116201 (J. Ingle). differentiation genes (45). The claudin-low subtype also con- The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked stitutes the residual subpopulation of breast cancer cells that advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this survived after chemo- and endocrine therapy and are enriched fact. þ in CD24 /low/CD44 cells (23). Our results show that TGFb/ a TNF treatment of breast cancer cells with a predominant Received December 21, 2010; revised April 4, 2011; accepted April 25, 2011; luminal phenotype results in generation of the claudin-low published OnlineFirst May 9, 2011.

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Downloaded from cancerres.aacrjournals.org on September 27, 2021. © 2011 American Association for Cancer Research. Cancer Correction Research Correction: TGFb/TNFa-Mediated Epithelial– Mesenchymal Transition Generates Breast Cancer Stem Cells with a Claudin-Low Phenotype

In this article (Cancer Res 2011;71:4707–19), which was published in the July 1, 2011, issue of Cancer Research (1), the labels for panels B and C in Fig. 4 are transposed. The data within the panels, however, are correct.

Reference 1. Asideu MK, Ingle JN, Behrens MD, Radisky DC, Knutson KL. TGFb/TNFa-mediated epithelial– mesenchymal transition generates breast cancer stem cells with a claudin-low phenotype. Cancer Res 2011;71:4707–19.

Published OnlineFirst August 16, 2011. 2011 American Association for Cancer Research. doi: 10.1158/0008-5472.CAN-11-2292

5942 Cancer Res; 71(17) September 1, 2011 Published OnlineFirst May 9, 2011; DOI: 10.1158/0008-5472.CAN-10-4554

TGFβ/TNFα-Mediated Epithelial−Mesenchymal Transition Generates Breast Cancer Stem Cells with a Claudin-Low Phenotype

Michael K. Asiedu, James N. Ingle, Marshall D. Behrens, et al.

Cancer Res 2011;71:4707-4719. Published OnlineFirst May 9, 2011.

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