Using transmission electron microscopy and 3View® to determine collagen fibril size and three-dimensional organization Tobias Starborg1,2+, Nicholas S. Kalson1,2+, Yinhui Lu1,2+, Aleksandr Mironov2, Timothy F. Cootes3, David F. Holmes1,2* and Karl E. Kadler1,2* 1Wellcome Trust Centre for Cell-Matrix Research and Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PT UNITED KINGDOM 2Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PT UNITED KINGDOM 3Faculty of Medicine and Human Sciences, Imaging Sciences and Biomedical Imaging Institute, University of Manchester, Stopford Building, Oxford Road, Manchester M13 9PT UNITED KINGDOM +Equal contribution *Authors for correspondence:
[email protected] [email protected] Telephone +44 161 275 5086 Running title: Size and organization of collagen fibrils in vivo Collagen fibrils are the major tensile element in vertebrate tissues where they occur as ordered bundles in the extracellular matrix. Abnormal fibril assembly and organization results in scarring, fibrosis, poor wound healing and connective tissue diseases. Transmission electron microscopy (TEM) is used to assess formation of the fibrils, predominantly by measuring fibril diameter. Here we describe an enhanced protocol for measuring fibril diameter as well as fibril-volume-fraction, mean fibril length, fibril cross-sectional shape, and fibril 3D organization that are also major determinants of tissue function. Serial section TEM (ssTEM) has been used to visualize fibril 3D-organization in vivo. However, serial block face- scanning electron microscopy (SBF-SEM) has emerged as a time-efficient alternative to ssTEM. The protocol described below is suitable for preparing tissues for TEM and SBF- SEM (by 3View®).