LOXL2 Promotes Aggrecan and Gender-Specific Anabolic
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Genetic and Genomic Analysis of Hyperlipidemia, Obesity and Diabetes Using (C57BL/6J × TALLYHO/Jngj) F2 Mice
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Nutrition Publications and Other Works Nutrition 12-19-2010 Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using (C57BL/6J × TALLYHO/JngJ) F2 mice Taryn P. Stewart Marshall University Hyoung Y. Kim University of Tennessee - Knoxville, [email protected] Arnold M. Saxton University of Tennessee - Knoxville, [email protected] Jung H. Kim Marshall University Follow this and additional works at: https://trace.tennessee.edu/utk_nutrpubs Part of the Animal Sciences Commons, and the Nutrition Commons Recommended Citation BMC Genomics 2010, 11:713 doi:10.1186/1471-2164-11-713 This Article is brought to you for free and open access by the Nutrition at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Nutrition Publications and Other Works by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. Stewart et al. BMC Genomics 2010, 11:713 http://www.biomedcentral.com/1471-2164/11/713 RESEARCH ARTICLE Open Access Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using (C57BL/6J × TALLYHO/JngJ) F2 mice Taryn P Stewart1, Hyoung Yon Kim2, Arnold M Saxton3, Jung Han Kim1* Abstract Background: Type 2 diabetes (T2D) is the most common form of diabetes in humans and is closely associated with dyslipidemia and obesity that magnifies the mortality and morbidity related to T2D. The genetic contribution to human T2D and related metabolic disorders is evident, and mostly follows polygenic inheritance. The TALLYHO/ JngJ (TH) mice are a polygenic model for T2D characterized by obesity, hyperinsulinemia, impaired glucose uptake and tolerance, hyperlipidemia, and hyperglycemia. -
Molecular Effects of Isoflavone Supplementation Human Intervention Studies and Quantitative Models for Risk Assessment
Molecular effects of isoflavone supplementation Human intervention studies and quantitative models for risk assessment Vera van der Velpen Thesis committee Promotors Prof. Dr Pieter van ‘t Veer Professor of Nutritional Epidemiology Wageningen University Prof. Dr Evert G. Schouten Emeritus Professor of Epidemiology and Prevention Wageningen University Co-promotors Dr Anouk Geelen Assistant professor, Division of Human Nutrition Wageningen University Dr Lydia A. Afman Assistant professor, Division of Human Nutrition Wageningen University Other members Prof. Dr Jaap Keijer, Wageningen University Dr Hubert P.J.M. Noteborn, Netherlands Food en Consumer Product Safety Authority Prof. Dr Yvonne T. van der Schouw, UMC Utrecht Dr Wendy L. Hall, King’s College London This research was conducted under the auspices of the Graduate School VLAG (Advanced studies in Food Technology, Agrobiotechnology, Nutrition and Health Sciences). Molecular effects of isoflavone supplementation Human intervention studies and quantitative models for risk assessment Vera van der Velpen Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Friday 20 June 2014 at 13.30 p.m. in the Aula. Vera van der Velpen Molecular effects of isoflavone supplementation: Human intervention studies and quantitative models for risk assessment 154 pages PhD thesis, Wageningen University, Wageningen, NL (2014) With references, with summaries in Dutch and English ISBN: 978-94-6173-952-0 ABSTRact Background: Risk assessment can potentially be improved by closely linked experiments in the disciplines of epidemiology and toxicology. -
Human LOXL2 / Lysyl Oxidase Homolog 2 Protein (His Tag)
Human LOXL2 / Lysyl oxidase homolog 2 Protein (His Tag) Catalog Number: 11664-H08H General Information SDS-PAGE: Gene Name Synonym: LOR2; Lysyl oxidase-like 2; WS9-14 Protein Construction: A DNA sequence encoding the human LOXL2 (Q9Y4K0) (Met 1-Gln 774) was expressed, fused with a polyhistidine tag at the C-terminus. Source: Human Expression Host: HEK293 Cells QC Testing Purity: > 90 % as determined by SDS-PAGE Bio Activity: Protein Description Measured by its ability to produce hydrogen peroxide during the oxidation of benzylamine. The specific activity is > 2 pmoles/min/μg. Lysyl oxidase homolog 2, also known as Lysyl oxidase-like protein 2, Lysyl oxidase-related protein 2, Lysyl oxidase-related protein WS9-14 and Endotoxin: LOXL2, is a secreted protein which belongs to thelysyl oxidase family. LOXL2 contains fourSRCR domains. The lysyl oxidase family is made up < 1.0 EU per μg of the protein as determined by the LAL method of five members: lysyl oxidase (LOX) and lysyl oxidase-like 1-4 ( LOXL1, LOXL2, LOXL3, LOXL4 ). All members share conserved C-terminal Stability: catalytic domains that provide for lysyl oxidase or lysyl oxidase-like enzyme Samples are stable for up to twelve months from date of receipt at -70 ℃ activity; and more divergent propeptide regions. LOX family enzyme activities catalyze the final enzymatic conversion required for the formation Predicted N terminal: Gln 26 of normal biosynthetic collagen and elastin cross-links. LOXL2 is expressed by pre-hypertrophic and hypertrophic chondrocytes in vivo, and Molecular Mass: that LOXL2 expression is regulated in vitro as a function of chondrocyte differentiation. -
The Function and Mechanisms of Action of LOXL2 in Cancer (Review)
1200 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 36: 1200-1204, 2015 The function and mechanisms of action of LOXL2 in cancer (Review) LINGHONG WU and YING ZHU Department of Infectious Diseases, The First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning 116011, P.R. China Received May 31, 2015; Accepted August 26, 2015 DOI: 10.3892/ijmm.2015.2337 Abstract. The lysyl oxidase (LOX) family is comprised of five copper‑dependent amine oxidase, and its main role is to members, and some members have recently emerged as impor- catalyze the covalent cross‑link of collagen and elastin in tant regulators of tumor progression. Among these, at present, the extracellular matrix (ECM). This occurs through the LOX‑like (LOXL)2 is the prototypical LOX and the most oxidative deamination of peptidyl lysine residues in ECM comprehensively studied member. A growing body of evidence components (1,2). Each member of the LOX family has a has implicated LOXL2 in the promotion of cancer cell inva- highly conserved carboxyl (C)‑terminal domain that contains a sion, metastasis and angiogenesis, as well as in the malignant copper‑binding motif, lysine tyrosylquinone (LTQ) residues and transformation of solid tumors. Moreover, a high expression of a cytokine receptor‑like (CRL) domain, which is essential for LOXL2 is associated with a poor prognosis. These data have catalytic activity (3). The amino‑terminal regions are different piqued the interest of a number of researchers and research and are thought to be important in protein‑protein interactions. groups, who have identified LOXL2 as a strong target candidate The prodomains in LOX and LOXL1 enable their secretion in the development of inhibitors for use as functional and effi- as inactive proenzymes, which are then activated extracel- cacious tumor therapeutics. -
Exome Sequencing Identifies a Spectrum of Mutation Frequencies in Advanced and Lethal Prostate Cancers
Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers Akash Kumara, Thomas A. Whiteb, Alexandra P. MacKenziea, Nigel Cleggb, Choli Leea, Ruth F. Dumpitb, Ilsa Colemanb, Sarah B. Nga, Stephen J. Salipantea, Mark J. Riedera, Deborah A. Nickersona, Eva Coreyc, Paul H. Langec, Colm Morrisseyc, Robert L. Vessellac, Peter S. Nelsona,b,c,1, and Jay Shendurea,1 aDepartment of Genome Sciences, University of Washington, Seattle, WA 98105; bFred Hutchinson Cancer Research Center, Seattle, WA 98109; and cDepartment of Urology, University of Washington, Seattle, WA 98195 Edited* by Mark Groudine, Fred Hutchinson Cancer Research Center, Seattle, WA, and approved September 1, 2011 (received for review June 4, 2011) To catalog protein-altering mutations that may drive the de- lethality that exists in prostate cancer. Furthermore, these tumor velopment of prostate cancers and their progression to metastatic xenografts have the advantage of little to no human stromal disease systematically, we performed whole-exome sequencing of contamination and provide the means to test the consequences 23 prostate cancers derived from 16 different lethal metastatic of mutations functionally. Although corresponding normal tissue tumors and three high-grade primary carcinomas. All tumors were was not sequenced for most samples, we find that comparisons propagated in mice as xenografts, designated the LuCaP series, to with increasingly deep catalogs of segregating germline variants fi model phenotypic variation, such as responses -
Gene Ontology Functional Annotations and Pleiotropy
Network based analysis of genetic disease associations Sarah Gilman Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy under the Executive Committee of the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2014 © 2013 Sarah Gilman All Rights Reserved ABSTRACT Network based analysis of genetic disease associations Sarah Gilman Despite extensive efforts and many promising early findings, genome-wide association studies have explained only a small fraction of the genetic factors contributing to common human diseases. There are many theories about where this “missing heritability” might lie, but increasingly the prevailing view is that common variants, the target of GWAS, are not solely responsible for susceptibility to common diseases and a substantial portion of human disease risk will be found among rare variants. Relatively new, such variants have not been subject to purifying selection, and therefore may be particularly pertinent for neuropsychiatric disorders and other diseases with greatly reduced fecundity. Recently, several researchers have made great progress towards uncovering the genetics behind autism and schizophrenia. By sequencing families, they have found hundreds of de novo variants occurring only in affected individuals, both large structural copy number variants and single nucleotide variants. Despite studying large cohorts there has been little recurrence among the genes implicated suggesting that many hundreds of genes may underlie these complex phenotypes. The question -
LOXL1 Confers Antiapoptosis and Promotes Gliomagenesis Through Stabilizing BAG2
Cell Death & Differentiation (2020) 27:3021–3036 https://doi.org/10.1038/s41418-020-0558-4 ARTICLE LOXL1 confers antiapoptosis and promotes gliomagenesis through stabilizing BAG2 1,2 3 4 3 4 3 1 1 Hua Yu ● Jun Ding ● Hongwen Zhu ● Yao Jing ● Hu Zhou ● Hengli Tian ● Ke Tang ● Gang Wang ● Xiongjun Wang1,2 Received: 10 January 2020 / Revised: 30 April 2020 / Accepted: 5 May 2020 / Published online: 18 May 2020 © The Author(s) 2020. This article is published with open access Abstract The lysyl oxidase (LOX) family is closely related to the progression of glioma. To ensure the clinical significance of LOX family in glioma, The Cancer Genome Atlas (TCGA) database was mined and the analysis indicated that higher LOXL1 expression was correlated with more malignant glioma progression. The functions of LOXL1 in promoting glioma cell survival and inhibiting apoptosis were studied by gain- and loss-of-function experiments in cells and animals. LOXL1 was found to exhibit antiapoptotic activity by interacting with multiple antiapoptosis modulators, especially BAG family molecular chaperone regulator 2 (BAG2). LOXL1-D515 interacted with BAG2-K186 through a hydrogen bond, and its lysyl 1234567890();,: 1234567890();,: oxidase activity prevented BAG2 degradation by competing with K186 ubiquitylation. Then, we discovered that LOXL1 expression was specifically upregulated through the VEGFR-Src-CEBPA axis. Clinically, the patients with higher LOXL1 levels in their blood had much more abundant BAG2 protein levels in glioma tissues. Conclusively, LOXL1 functions as an important mediator that increases the antiapoptotic capacity of tumor cells, and approaches targeting LOXL1 represent a potential strategy for treating glioma. -
Matrix Stiffness-Upregulated LOXL2 Promotes Fibronectin Production
Wu et al. Journal of Experimental & Clinical Cancer Research (2018) 37:99 https://doi.org/10.1186/s13046-018-0761-z RESEARCH Open Access Matrix stiffness-upregulated LOXL2 promotes fibronectin production, MMP9 and CXCL12 expression and BMDCs recruitment to assist pre-metastatic niche formation Sifan Wu1, Qiongdan Zheng1, Xiaoxia Xing1, Yinying Dong1, Yaohui Wang2, Yang You1, Rongxin Chen1, Chao Hu3, Jie Chen1, Dongmei Gao1, Yan Zhao1, Zhiming Wang4, Tongchun Xue1, Zhenggang Ren1 and Jiefeng Cui1* Abstract Background: Higher matrix stiffness affects biological behavior of tumor cells, regulates tumor-associated gene/ miRNA expression and stemness characteristic, and contributes to tumor invasion and metastasis. However, the linkage between higher matrix stiffness and pre-metastatic niche in hepatocellular carcinoma (HCC) is still largely unknown. Methods: We comparatively analyzed the expressions of LOX family members in HCC cells grown on different stiffness substrates, and speculated that the secreted LOXL2 may mediate the linkage between higher matrix stiffness and pre- metastatic niche. Subsequently, we investigated the underlying molecular mechanism by which matrix stiffness induced LOXL2 expression in HCC cells, and explored the effects of LOXL2 on pre-metastatic niche formation, such as BMCs recruitment, fibronectin production, MMPs and CXCL12 expression, cell adhesion, etc. Results: Higher matrix stiffness significantly upregulated LOXL2 expression in HCC cells, and activated JNK/c-JUN signaling pathway. Knockdown of integrin β1andα5 suppressed LOXL2 expression and reversed the activation of above signaling pathway. Additionally, JNK inhibitor attenuated the expressions of p-JNK, p-c-JUN, c-JUN and LOXL2, and shRNA-c-JUN also decreased LOXL2 expression. CM-LV-LOXL2-OE and rhLOXL2 upregulated MMP9 expression and fibronectin production obviously in lung fibroblasts. -
New Approach for Untangling the Role of Uncommon Calcium-Binding Proteins in the Central Nervous System
brain sciences Review New Approach for Untangling the Role of Uncommon Calcium-Binding Proteins in the Central Nervous System Krisztina Kelemen * and Tibor Szilágyi Department of Physiology, Doctoral School, Faculty of Medicine, George Emil Palade University of Medicine, Pharmacy, Science, and Technology of Targu Mures, 540142 Târgu Mures, , Romania; [email protected] * Correspondence: [email protected]; Tel.: +40-746-248064 Abstract: Although Ca2+ ion plays an essential role in cellular physiology, calcium-binding proteins (CaBPs) were long used for mainly as immunohistochemical markers of specific cell types in different regions of the central nervous system. They are a heterogeneous and wide-ranging group of proteins. Their function was studied intensively in the last two decades and a tremendous amount of informa- tion was gathered about them. Girard et al. compiled a comprehensive list of the gene-expression profiles of the entire EF-hand gene superfamily in the murine brain. We selected from this database those CaBPs which are related to information processing and/or neuronal signalling, have a Ca2+- buffer activity, Ca2+-sensor activity, modulator of Ca2+-channel activity, or a yet unknown function. In this way we created a gene function-based selection of the CaBPs. We cross-referenced these findings with publicly available, high-quality RNA-sequencing and in situ hybridization databases (Human Protein Atlas (HPA), Brain RNA-seq database and Allen Brain Atlas integrated into the HPA) and created gene expression heat maps of the regional and cell type-specific expression levels of the selected CaBPs. This represents a useful tool to predict and investigate different expression patterns and functions of the less-known CaBPs of the central nervous system. -
Prognostic Significance of Abnormal Matrix Collagen Remodeling in Colorectal Cancer Based on Histologic and Bioinformatics Analysis
ONCOLOGY REPORTS 44: 1671-1685, 2020 Prognostic significance of abnormal matrix collagen remodeling in colorectal cancer based on histologic and bioinformatics analysis YUQI LIANG1,2, ZHIHAO LV3, GUOHANG HUANG4, JINGCHUN QIN1,2, HUIXUAN LI1,2, FEIFEI NONG1,2 and BIN WEN1,2 1Department of Science and Technology Innovation Center, Guangzhou University of Chinese Medicine; 2Department of PI-WEI Institute of Guangzhou University of Chinese Medicine, Guangzhou, Guangdong 510000; 3Department of Anorectal Surgery, Zhongshan Hospital Affiliated to Guangzhou University of Chinese Medicine, Zhongshan, Guangdong 528400; 4Department of Rehabilitation Sciences, The Hong Kong Polytechnic University, Hong Kong, SAR 999077, P.R. China Received February 25, 2020; Accepted July 20, 2020 DOI: 10.3892/or.2020.7729 Abstract. As the major component of the tumor matrix, CRC. Furthermore, the results of Gene Ontology (GO) and collagen greatly influences tumor invasion and prognosis. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis The present study compared the remodeling of collagen and suggest that collagen may promote tumor development by collagenase in 56 patients with colorectal cancer (CRC) using activating platelets. Collectively, the abnormal collagen Sirius red stain and immunohistochemistry, exploring the remodeling, including associated protein and coding genes is relationship between collagen remodeling and the prognosis associated with the tumorigenesis and metastasis, affecting the of CRC. Weak or strong changes in collagen fiber arrange- prognosis of patients with CRC. ment in birefringence were observed. With the exception of a higher density, weak changes equated to a similar Introduction arrangement in normal collagen, while strong changes facilitated cross-linking into bundles. Compared with normal Colorectal cancer (CRC) has a high global incidence and tissues, collagen I (COL I) and III (COL III) deposition was mortality rate (1). -
Systematic Discovery of Endogenous Human Ribonucleoprotein Complexes
bioRxiv preprint doi: https://doi.org/10.1101/480061; this version posted November 27, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Systematic discovery of endogenous human ribonucleoprotein complexes Anna L. Mallam1,2,3,§,*, Wisath Sae-Lee1,2,3, Jeffrey M. Schaub1,2,3, Fan Tu1,2,3, Anna Battenhouse1,2,3, Yu Jin Jang1, Jonghwan Kim1, Ilya J. Finkelstein1,2,3, Edward M. Marcotte1,2,3,§, Kevin Drew1,2,3,§,* 1 Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA 2 Center for Systems and Synthetic Biology, University of Texas at Austin, Austin, TX 78712, USA 3 Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA § Correspondence: [email protected] (A.L.M.), [email protected] (E.M.M.), [email protected] (K.D.) * These authors contributed equally to this work Short title: A resource of human ribonucleoprotein complexes Summary: An exploration of human protein complexes in the presence and absence of RNA reveals endogenous ribonucleoprotein complexes ! 1! bioRxiv preprint doi: https://doi.org/10.1101/480061; this version posted November 27, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Abstract Ribonucleoprotein (RNP) complexes are important for many cellular functions but their prevalence has not been systematically investigated. -
Clinical Implications of Lysyl Oxidase-Like Protein 2 Expression
www.nature.com/scientificreports OPEN Clinical Implications of Lysyl Oxidase-Like Protein 2 Expression in Pancreatic Cancer Received: 3 April 2018 Nobutake Tanaka1, Suguru Yamada1, Fuminori Sonohara1, Masaya Suenaga1, Masamichi Accepted: 19 June 2018 Hayashi1, Hideki Takami1, Yukiko Niwa1, Norifumi Hattori1, Naoki Iwata1, Mitsuro Kanda1, Published: xx xx xxxx Chie Tanaka1, Daisuke Kobayashi1, Goro Nakayama1, Masahiko Koike1, Michitaka Fujiwara1, Tsutomu Fujii2 & Yasuhiro Kodera1 Lysyl oxidase (LOX) family genes, particularly lysyl oxidase-like protein 2 (LOXL2), have been implicated in carcinogenesis, metastasis, and the epithelial-to-mesenchymal transition (EMT) in various cancers. This study aimed to explore the clinical implications of LOXL2 expression in pancreatic cancer (PC) in the context of EMT status. LOX family mRNA expression was measured in PC cell lines, and LOXL2 protein levels were examined in surgical specimens resected from 170 patients with PC. Higher LOXL2 expression was observed in cell lines from mesenchymal type PC than in those from epithelial type PC. A signifcant correlation between LOXL2 expression and the EMT status defned based on the expression of E-cadherin and vimentin was observed in surgical specimens (P < 0.01). The disease-free survival and overall survival rates among patients with low LOXL2 expression were signifcantly better than those among patients with high LOXL2 expression (P < 0.001). According to the multivariate analysis, high LOXL2 expression (P = 0.03) was a signifcant independent prognostic factor for patients with PC. Additionally, LOX inhibition signifcantly decreased PC cell proliferation, migration, and invasion in vitro. In conclusion, LOXL2 expression is potentially associated with PC progression, and LOXL2 expression represents a biomarker for predicting the prognosis of patients with PC who have undergone complete resection.