Cooperation and Conflict in the Evolution of Individuality IV. Conflict
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Volvox Carteri Benjamin Klein1, Daniel Wibberg2 and Armin Hallmann1*
Klein et al. BMC Biology (2017) 15:111 DOI 10.1186/s12915-017-0450-y RESEARCH ARTICLE Open Access Whole transcriptome RNA-Seq analysis reveals extensive cell type-specific compartmentalization in Volvox carteri Benjamin Klein1, Daniel Wibberg2 and Armin Hallmann1* Abstract Background: One of evolution’s most important achievements is the development and radiation of multicellular organisms with different types of cells. Complex multicellularity has evolved several times in eukaryotes; yet, in most lineages, an investigation of its molecular background is considerably challenging since the transition occurred too far in the past and, in addition, these lineages evolved a large number of cell types. However, for volvocine green algae, such as Volvox carteri, multicellularity is a relatively recent innovation. Furthermore, V. carteri shows a complete division of labor between only two cell types – small, flagellated somatic cells and large, immotile reproductive cells. Thus, V. carteri provides a unique opportunity to study multicellularity and cellular differentiation at the molecular level. Results: This study provides a whole transcriptome RNA-Seq analysis of separated cell types of the multicellular green alga V. carteri f. nagariensis to reveal cell type-specific components and functions. To this end, 246 million quality filtered reads were mapped to the genome and valid expression data were obtained for 93% of the 14,247 gene loci. In the subsequent search for protein domains with assigned molecular function, we identified 9435 previously classified domains in 44% of all gene loci. Furthermore, in 43% of all gene loci we identified 15,254 domains that are involved in biological processes. All identified domains were investigated regarding cell type-specific expression. -
Flagellar, Cellular and Organismal Polarity in Volvox Carteri
SUNY Geneseo KnightScholar Biology Faculty/Staff Works Department of Biology 1993 Flagellar, cellular and organismal polarity in Volvox carteri Harold J. Hoops SUNY Geneseo Follow this and additional works at: https://knightscholar.geneseo.edu/biology Recommended Citation Hoops H.J. (1993) Flagellar, cellular and organismal polarity in Volvox carteri. Journal of Cell Science 104: 105-117. doi: This Article is brought to you for free and open access by the Department of Biology at KnightScholar. It has been accepted for inclusion in Biology Faculty/Staff Works by an authorized administrator of KnightScholar. For more information, please contact [email protected]. Journal of Cell Science 104, 105-117 (1993) 105 Printed in Great Britain © The Company of Biologists Limited 1993 Flagellar, cellular and organismal polarity in Volvox carteri Harold J. Hoops Department of Biology, 1 Circle Drive, SUNY-Genesco, Genesco, NY 14454, USA SUMMARY It has previously been shown that the flagellar appara- reorientation of flagellar apparatus components. This tus of the mature Volvox carteri somatic cell lacks the reorientation also results in the movement of the eye- 180˚ rotational symmetry typical of most unicellular spot from a position nearer one of the flagellar bases to green algae. This asymmetry has been postulated to be a position approximately equidistant between them. By the result of rotation of each half of the flagellar appa- analogy to Chlamydomonas, the anti side of the V. car - ratus. Here it is shown that V. carteri axonemes contain teri somatic cell faces the spheroid anterior, the syn side polarity markers that are similar to those found in faces the spheroid posterior. -
Red and Green Algal Monophyly and Extensive Gene Sharing Found in a Rich Repertoire of Red Algal Genes
Current Biology 21, 328–333, February 22, 2011 ª2011 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2011.01.037 Report Red and Green Algal Monophyly and Extensive Gene Sharing Found in a Rich Repertoire of Red Algal Genes Cheong Xin Chan,1,5 Eun Chan Yang,2,5 Titas Banerjee,1 sequences in our local database, in which we included the Hwan Su Yoon,2,* Patrick T. Martone,3 Jose´ M. Estevez,4 23,961 predicted proteins from C. tuberculosum (see Table and Debashish Bhattacharya1,* S1 available online). Of these hits, 9,822 proteins (72.1%, 1Department of Ecology, Evolution, and Natural Resources including many P. cruentum paralogs) were present in C. tuber- and Institute of Marine and Coastal Sciences, Rutgers culosum and/or other red algae, 6,392 (46.9%) were shared University, New Brunswick, NJ 08901, USA with C. merolae, and 1,609 were found only in red algae. A total 2Bigelow Laboratory for Ocean Sciences, West Boothbay of 1,409 proteins had hits only to red algae and one other Harbor, ME 04575, USA phylum. Using this repertoire, we adopted a simplified recip- 3Department of Botany, University of British Columbia, 6270 rocal BLAST best-hits approach to study the pattern of exclu- University Boulevard, Vancouver, BC V6T 1Z4, Canada sive gene sharing between red algae and other phyla (see 4Instituto de Fisiologı´a, Biologı´a Molecular y Neurociencias Experimental Procedures). We found that 644 proteins showed (IFIBYNE UBA-CONICET), Facultad de Ciencias Exactas y evidence of exclusive gene sharing with red algae. Of these, Naturales, Universidad de Buenos Aires, 1428 Buenos Aires, 145 (23%) were found only in red + green algae (hereafter, Argentina RG) and 139 (22%) only in red + Alveolata (Figure 1A). -
Algae of the Genus Volvox (Chlorophyta) in Sub-Extreme Habitats T A.G
Short Communication T REPRO N DU The International Journal of Plant Reproductive Biology 12(2) July, 2020, pp.156-158 LA C P T I F V O E B Y T I DOI 10.14787/ijprb.2020 12.2. O E I L O C G O S I S T E S H Algae of the genus Volvox (Chlorophyta) in sub-extreme habitats T A.G. Desnitskiy Department of Embryology, Saint-Petersburg State University, Saint-Petersburg, 199034, Universitetskaya nab. 7/9, Russia e-mail: [email protected]; [email protected] Received: 18. 05. 2020; Revised: 08. 06. 2020; Accepted and Published online: 15. 06. 2020 ABSTRACT Literature data on the life of green colonial algae of the genus Volvox (Chlorophyta) in sub-extreme habitats (polar, sub-polar and mountain regions) are critically considered. Very few species (primarily homothallic Volvox aureus) are able to thrive in such conditions. Keywords : Geographical distribution, reproduction, sub-extreme habitats, Volvox. The genus Volvox Linnaeus (Volvocaceae, Chlorophyta) Peru (South America) at the elevation of more than five includes more than 20 species of freshwater flagellate algae thousand meters above sea level seems to be doubtful. The (Nozaki et al. 2015), providing an opportunity to study the illustration from this article (which focuses mainly on developmental mechanisms in a relatively simple system diatoms) shows a spherical colony with a diameter of about 14 consisting of two cellular types (somatic and reproductive). μm, consisting of several hundred very small cells (Fritz et al. Volvox carteri f. nagariensis Iyengar is a valuable model of 2015, p. -
Mitosis Vs. Meiosis
Mitosis vs. Meiosis In order for organisms to continue growing and/or replace cells that are dead or beyond repair, cells must replicate, or make identical copies of themselves. In order to do this and maintain the proper number of chromosomes, the cells of eukaryotes must undergo mitosis to divide up their DNA. The dividing of the DNA ensures that both the “old” cell (parent cell) and the “new” cells (daughter cells) have the same genetic makeup and both will be diploid, or containing the same number of chromosomes as the parent cell. For reproduction of an organism to occur, the original parent cell will undergo Meiosis to create 4 new daughter cells with a slightly different genetic makeup in order to ensure genetic diversity when fertilization occurs. The four daughter cells will be haploid, or containing half the number of chromosomes as the parent cell. The difference between the two processes is that mitosis occurs in non-reproductive cells, or somatic cells, and meiosis occurs in the cells that participate in sexual reproduction, or germ cells. The Somatic Cell Cycle (Mitosis) The somatic cell cycle consists of 3 phases: interphase, m phase, and cytokinesis. 1. Interphase: Interphase is considered the non-dividing phase of the cell cycle. It is not a part of the actual process of mitosis, but it readies the cell for mitosis. It is made up of 3 sub-phases: • G1 Phase: In G1, the cell is growing. In most organisms, the majority of the cell’s life span is spent in G1. • S Phase: In each human somatic cell, there are 23 pairs of chromosomes; one chromosome comes from the mother and one comes from the father. -
Review Cell Fusion and Some Subcellular Properties Of
REVIEW CELL FUSION AND SOME SUBCELLULAR PROPERTIES OF HETEROKARYONS AND HYBRIDS SAIMON GORDON From the Genetics Laboratory, Department of Biochemistry, The University of Oxford, England, and The Rockefeller University, New York 10021 I. INTRODUCTION The technique of somatic cell fusion has made it first cell hybrids obtained by this method. The iso- possible to study cell biology in an unusual and lation of hybrid cells from such mixed cultures direct way. When cells are mixed in the presence of was greatly facilitated by the Szybalski et al. (6) Sendai virus, their membranes coalesce, the cyto- and Littlefield (7, 8) adaptation of a selective me- plasm becomes intermingled, and multinucleated dium containing hypoxanthine, aminopterin, and homo- and heterokaryons are formed by fusion of thymidine (HAT) to mammalian systems. similar or different cells, respectively (1, 2). By Further progress followed the use of Sendai fusing cells which contrast in some important virus by Harris and Watkins to increase the biologic property, it becomes possible to ask ques- frequency of heterokaryon formation (9). These tions about dominance of control processes, nu- authors exploited the observation by Okada that cleocytoplasmic interactions, and complementa- UV irradiation could be used to inactivate Sendai tion in somatic cell heterokaryons. The multinucle- virus without loss of fusion efficiency (10). It was ate cell may divide and give rise to mononuclear therefore possible to eliminate the problem of virus cells containing chromosomes from both parental replication in fused cells. Since many cells carry cells and become established as a hybrid cell line receptors for Sendai virus, including those of able to propagate indefinitely in vitro. -
Gene Therapy Product Quality Aspects in the Production of Vectors and Genetically Modified Somatic Cells
_____________________________________________________________ 3AB6a ■ GENE THERAPY PRODUCT QUALITY ASPECTS IN THE PRODUCTION OF VECTORS AND GENETICALLY MODIFIED SOMATIC CELLS Guideline Title Gene Therapy Product Quality Aspects in the Production of Vectors and Genetically Modified Somatic Cells Legislative basis Directive 75/318/EEC as amended Date of first adoption December 1994 Date of entry into July 1995 force Status Last revised December 1994 Previous titles/other Gene Therapy Products - Quality, Safety and Efficacy references Aspects in the Production of Vectors and Genetically Modified Somatic Cells/ III/5863/93 Additional Notes This note for guidance is intended to facilitate the collection and submission of data to support applications for marketing authorisation within the EC for gene therapy products derived by biotechnology/high technology and intended for medicinal use in man. CONTENTS 1. INTRODUCTION 2. POINTS TO CONSIDER IN MANUFACTURE 3. DEVELOPMENT GENETICS 4. PRODUCTION 5. PURIFICATION 6. PRODUCT CHARACTERISATION 7. CONSISTENCY AND ROUTINE BATCH CONTROL OF FINAL PROCESSED PRODUCT 8. SAFETY REGULATIONS 275 _____________________________________________________________ 3AB6a ■ GENE THERAPY PRODUCT QUALITY ASPECTS IN THE PRODUCTION OF VECTORS AND GENETICALLY MODIFIED SOMATIC CELLS 1. INTRODUCTION Somatic gene therapy encompasses medical interventions which involve the deliberate modification of the genetic material of somatic cells. Scientific progress over the past decade has led to the development of novel methods for the transfer of new genetic material into patients’ cells. The aims of these methods include the efficient transfer and functional expression or manifestation of the transferred genetic material in a target somatic cell population for therapeutic, prophylactic or diagnostic purposes. Although in the majority of cases the intention is the addition and expression of a gene to yield a protein product, the transfer of nucleic acids with the aim of modifying the function or expression of an endogenous gene, e.g. -
Human Germline Genome Editing: Fact Sheet
Human germline genome editing: fact sheet Purpose • To contribute to evidence-informed discussions about human germline genome editing. KEY TAKEAWAYS • Gene editing offers the potential to improve human health in ways not previously possible. • Making changes to human genes that can be passed on to future generations is prohibited in Australia. • Unresolved questions remain on the possible long-term impacts, unintended consequences, and ethical issues associated with introducing heritable changes by editing of the genome of human gametes (sperm and eggs) and embryos. • AusBiotech believes the focus of human gene editing should remain on non-inheritable changes until such time as the scientific evidence, regulatory frameworks and health care models have progressed sufficiently to warrant consideration of any heritable genetic edits. Gene editing Gene editing is the insertion, deletion, or modification of DNA to modify an organism’s specific genetic characteristics. New and evolving gene editing techniques and tools (e.g. CRISPR) allow editing of genes with a level of precision that increases its applications across the health, agricultural, and industrial sectors. These breakthrough techniques potentially offer a range of different options for treating devastating human diseases and delivering environmentally sustainable food production systems that can feed the world’s growing population, which is expected to exceed nine billion by 2050. The current primary application of human gene editing is on non-reproductive cells (‘somatic’ cells) -
Cell Division- Ch 5
Cell Division- Mitosis and Meiosis When do cells divide? Cell size . One of most important factors affecting size of the cell is size of cell membrane . Cell must remain relatively small to survive (why?) – Cell membrane has to be big enough to take in nutrients and eliminate wastes – As cells get bigger, the volume increases faster than the surface area – Small cells have a larger surface area to volume ratio than larger cells to help with nutrient intake and waste elimination . When a cell reaches its max size, the nucleus starts cell division: called MITOSIS or MEIOSIS Mitosis . General Information – Occurs in somatic (body) cells ONLY!! – Nickname: called “normal” cell division – Produces somatic cells only . Background Info – Starts with somatic cell in DIPLOID (2n) state . Cell contains homologous chromosomes- chromosomes that control the same traits but not necessarily in the same way . 1 set from mom and 1 set from dad – Ends in diploid (2n) state as SOMATIC cells – Goes through one set of divisions – Start with 1 cell and end with 2 cells Mitosis (cont.) . Accounts for three essential life processes – Growth . Result of cell producing new cells . Develop specialized shapes/functions in a process called differentiation . Rate of cell division controlled by GH (Growth Hormone) which is produced in the pituitary gland . Ex. Nerve cell, intestinal cell, etc. – Repair . Cell regenerates at the site of injury . Ex. Skin (replaced every 28 days), blood vessels, bone Mitosis (cont.) – Reproduction . Asexual – Offspring produced by only one parent – Produce offspring that are genetically identical – MITOSIS – Ex. Bacteria, fungi, certain plants and animals . -
JUDD W.S. Et. Al. (2002) Plant Systematics: a Phylogenetic Approach. Chapter 7. an Overview of Green
UNCORRECTED PAGE PROOFS An Overview of Green Plant Phylogeny he word plant is commonly used to refer to any auto- trophic eukaryotic organism capable of converting light energy into chemical energy via the process of photosynthe- sis. More specifically, these organisms produce carbohydrates from carbon dioxide and water in the presence of chlorophyll inside of organelles called chloroplasts. Sometimes the term plant is extended to include autotrophic prokaryotic forms, especially the (eu)bacterial lineage known as the cyanobacteria (or blue- green algae). Many traditional botany textbooks even include the fungi, which differ dramatically in being heterotrophic eukaryotic organisms that enzymatically break down living or dead organic material and then absorb the simpler products. Fungi appear to be more closely related to animals, another lineage of heterotrophs characterized by eating other organisms and digesting them inter- nally. In this chapter we first briefly discuss the origin and evolution of several separately evolved plant lineages, both to acquaint you with these important branches of the tree of life and to help put the green plant lineage in broad phylogenetic perspective. We then focus attention on the evolution of green plants, emphasizing sev- eral critical transitions. Specifically, we concentrate on the origins of land plants (embryophytes), of vascular plants (tracheophytes), of 1 UNCORRECTED PAGE PROOFS 2 CHAPTER SEVEN seed plants (spermatophytes), and of flowering plants dons.” In some cases it is possible to abandon such (angiosperms). names entirely, but in others it is tempting to retain Although knowledge of fossil plants is critical to a them, either as common names for certain forms of orga- deep understanding of each of these shifts and some key nization (e.g., the “bryophytic” life cycle), or to refer to a fossils are mentioned, much of our discussion focuses on clade (e.g., applying “gymnosperms” to a hypothesized extant groups. -
Bio 103 Lecture
Biology 103 Lecture Mitosis and Meiosis Study Guide (Cellular Basis of Reproduction - Chapter 8) Like begets like, more or less · does sexual reproduction and genetics allow for a maple tree to produce a sea star? · do offspring inherit genetic material from both parents in asexual reproduction? · do offspring inherit genetic material from both parents in sexual reproduction? · what is the name of structures that contain most of an organism's DNA? Cells arise only from preexisting cells · what two main roles does cell division play in perpetuating the life cycle of animals and other multicellular organisms? Prokaryotes reproduce by binary fission · what is the name of the type of cell division used by prokaryotes to reproduce themselves? · do prokaryotes have DNA? · do prokaryotes replicate their chromosome prior to division? · is binary fission considered asexual or sexual reproduction and why? The large, complex chromosomes of eukaryotes duplicate with each cell division · in what structure of the eukaryotic cell do most of the genes occur? · what are genes and where are they located? · what is chromatin and how is it different from chromosomes? · understand chromosome duplication and distribution The cell cycle multiplies cells · define cell cycle · what are the major components of the cell cycle? · in what phase of the cell cycle does the cell spend the most time? · what occurs during cytokinesis? Cell division is a continuum of dynamic changes · know that the main things that occur during the four stages of mitosis are formation -
The Genome of Prasinoderma Coloniale Unveils the Existence of a Third Phylum Within Green Plants
Downloaded from orbit.dtu.dk on: Oct 10, 2021 The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants Li, Linzhou; Wang, Sibo; Wang, Hongli; Sahu, Sunil Kumar; Marin, Birger; Li, Haoyuan; Xu, Yan; Liang, Hongping; Li, Zhen; Cheng, Shifeng Total number of authors: 24 Published in: Nature Ecology & Evolution Link to article, DOI: 10.1038/s41559-020-1221-7 Publication date: 2020 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Li, L., Wang, S., Wang, H., Sahu, S. K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G. K. S., ... Liu, H. (2020). The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants. Nature Ecology & Evolution, 4, 1220-1231. https://doi.org/10.1038/s41559-020-1221-7 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim.