ABC Transporters, Neural Stem Cells and Neurogenesis – a Different Perspective
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The Pharmacogenomics of Vincristine-Induced Neurotoxicity
THE PHARMACOGENOMICS OF VINCRISTINE-INDUCED NEUROTOXICITY IN PAEDIATRIC CANCER PATIENTS WITH WILMS TUMOR OR RHABDOMYOSARCOMA by Tenneille Loo A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE in THE FACULTY OF GRADUATE STUDIES (Experimental Medicine) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) July 2011 © Tenneille Loo, 2011 Abstract Vincristine is one of the most effective and widely utilized antineoplastic agents. However, the clinical utility of this drug is limited by severely debilitating vincristine- induced neurotoxicities (VIN). Previous studies have associated VIN with genetic polymorphisms in genes involved in the metabolism and transportation of vincristine, including CYP3A4, CYP3A5, and ABCB1. However, the findings of such studies have not been consistently reproduced. This study hypothesizes that there are specific variants in genes involved in general drug absorption, metabolism, distribution, excretion, and toxicity (ADME-Tox) that affect the individual susceptibility to VIN in patients with Wilms tumor and rhabdomyosarcoma. Detailed clinical data was collected from 140 patients with Wilms tumor and rhabdomyosarcoma by retrospective chart review. VIN cases were characterized by type of neurotoxicity, and severity was evaluated using a validated clinical grading system for adverse events (NCI-CTCAE v4.03). A customized Illumina GoldenGate Panel was used to genotype 4,536 single nucleotide polymorphisms (SNPs) in candidate genes involved in the metabolism and transportation pathway of vincristine, as well as in genes broadly involved in ADME-Tox. None of the SNPs that were previously reported to be associated with VIN were found to be significantly associated (p-value < 0.05). With similar effect sizes, six novel genetic variants in five genes (PON1, ABCA4, ABCG1, CY51A1, SLCO1C1) were significantly associated with VIN in both tumor types. -
The Translational Expression of ABCA2 and ABCA3 Is a Strong Prognostic Biomarker for Multidrug Resistance in Pediatric Acute Lymphoblastic Leukemia
Journal name: OncoTargets and Therapy Article Designation: Original Research Year: 2017 Volume: 10 OncoTargets and Therapy Dovepress Running head verso: Aberuyi et al Running head recto: ABCA2/A3 transporters and multidrug-resistant ALL open access to scientific and medical research DOI: http://dx.doi.org/10.2147/OTT.S140488 Open Access Full Text Article ORIGINAL RESEARCH The translational expression of ABCA2 and ABCA3 is a strong prognostic biomarker for multidrug resistance in pediatric acute lymphoblastic leukemia Narges Aberuyi1 Purpose: The aim of this work was to study the correlation between the expressions of the Soheila Rahgozar1 ABCA2 and ABCA3 genes at the mRNA and protein levels in children with acute lymphoblastic Zohreh Khosravi Dehaghi1 leukemia (ALL) and the effects of this association on multidrug resistance (MDR). Alireza Moafi2 Materials and methods: Sixty-nine children with de novo ALL and 25 controls were Andrea Masotti3,* enrolled in the study. Mononuclear cells were isolated from the bone marrow. The mRNA Alessandro Paolini3,* levels of ABCA2 and ABCA3 were measured by real-time polymerase chain reaction (PCR). Samples with high mRNA levels were assessed for respective protein levels by Western blot- 1 Department of Biology, Faculty ting. Following the first year of treatment, persistent monoclonality of T-cell gamma receptors of Science, University of Isfahan, 2Department of Pediatric- or immunoglobulin H (IgH) gene rearrangement was assessed and considered as the MDR. Hematology-Oncology, Sayed-ol- The tertiary structure of ABCA2 was predicted using Phyre2 and I-TASSER web systems Shohada Hospital, Isfahan University and compared to that of ABCA3, which has been previously reported. -
CD157 and CD200 at the Crossroads of Endothelial Remodeling and Immune Regulation
Editorial Commentary Page 1 of 7 CD157 and CD200 at the crossroads of endothelial remodeling and immune regulation Masuko Katoh1, Masaru Katoh2 1M & M PrecMed, Tokyo, Japan; 2Department of Omics Network, National Cancer Center, Tokyo, Japan Correspondence to: Masaru Katoh. Department of Omics Network, National Cancer Center, 5-1-1 Tsukiji, Chuo-ward, Tokyo 104-0045, Japan. Email: [email protected]. Comment on: Wakabayashi T, Naito H, Suehiro JI, et al. CD157 Marks Tissue-Resident Endothelial Stem Cells with Homeostatic and Regenerative Properties. Cell Stem Cell 2018;22:384-97.e6. Received: 11 March 2019; Accepted: 08 April 2019; Published: 19 April 2019. doi: 10.21037/sci.2019.04.01 View this article at: http://dx.doi.org/10.21037/sci.2019.04.01 The endothelial cells that coat the inner wall of blood cells formed more CD31 (PECAM1)-positive colonies than vessels are essential for the maintenance of the vascular CD200 single-positive or CD157/CD200 double-negative network, metabolic homeostasis and stem cell populations liver endothelial cells in vitro. The expression levels of Atf3, in tissue or tumor microenvironments (1-3). Angiogenesis Fosl2, Myc and Sox7 were significantly upregulated in the is defined as neovascular formation through the sprouting CD157/CD200 double-positive cells compared with the and proliferation of endothelial cells from preexisting CD200 single-positive or CD157/CD200 double-negative blood vessels. VEGF (VEGFA) and FGFs that transduce cells; however, the functions of these transcription factors signals through VEGFR2 and FGFRs, respectively, are in CD157/CD200 double-positive endothelial cells remain representative proangiogenic factors (4,5). -
Examining the Role of ABC Lipid Transporters in Pulmonary Lipid Homeostasis and Inflammation Amanda B
Chai et al. Respiratory Research (2017) 18:41 DOI 10.1186/s12931-017-0526-9 REVIEW Open Access Examining the role of ABC lipid transporters in pulmonary lipid homeostasis and inflammation Amanda B. Chai1, Alaina J. Ammit2,3* and Ingrid C. Gelissen1 Abstract Respiratory diseases including asthma and chronic obstructive pulmonary disease (COPD) are characterised by excessive and persistent inflammation. Current treatments are often inadequate for symptom and disease control, and hence new therapies are warranted. Recent emerging research has implicated dyslipidaemia in pulmonary inflammation. Three ATP-binding cassette (ABC) transporters are found in the mammalian lung – ABCA1, ABCG1 and ABCA3 – that are involved in movement of cholesterol and phospholipids from lung cells. The aim of this review is to corroborate the current evidence for the role of ABC lipid transporters in pulmonary lipid homeostasis and inflammation. Here, we summarise results from murine knockout studies, human diseases associated with ABC transporter mutations, and in vitro studies. Disruption to ABC transporter activity results in lipid accumulation and elevated levels of inflammatory cytokines in lung tissue. Furthermore, these ABC-knockout mice exhibit signs of respiratory distress. ABC lipid transporters appear to have a crucial and protective role in the lung. However, our knowledge of the underlying molecular mechanisms for these benefits requires further attention. Understanding the relationship between cholesterol and inflammation in the lung, and the role that ABC transporters play in this may illuminate new pathways to target for the treatment of inflammatory lung diseases. Keywords: ABC transporters, ABCA1, ABCG1, ABCA3, Lipids, Surfactant, Pulmonary inflammation Background lung tissue of patients with COPD [5]. -
ABCC12 Monoclonal Antibody, Clone M9II-3
ABCC12 monoclonal antibody, Gene Symbol: ABCC12 clone M9II-3 Gene Alias: MGC27071, MRP9 Catalog Number: MAB6675 Gene Summary: This gene is a member of the superfamily of ATP-binding cassette (ABC) transporters Regulatory Status: For research use only (RUO) and the encoded protein contains two ATP-binding domains and 12 transmembrane regions. ABC proteins Product Description: Rat monoclonal antibody raised transport various molecules across extra- and against partial recombinant ABCC12. intracellular membranes. ABC genes are divided into Clone Name: M9II-3 seven distinct subfamilies: ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, and White. This gene is a member of Immunogen: Recombinant protein corresponding to the MRP subfamily which is involved in multi-drug amino acids 690-734 of human ABCC12. resistance. This gene and another subfamily member are arranged head-to-tail on chromosome 16q12.1. Host: Rat Increased expression of this gene is associated with breast cancer. [provided by RefSeq] Reactivity: Human References: Applications: ICC, IHC-Fr, WB 1. Multidrug resistance-associated protein 9 (ABCC12) is (See our web site product page for detailed applications present in mouse and boar sperm. Ono N, Van der information) Heijden I, Scheffer GL, Van de Wetering K, Van Deemter E, De Haas M, Boerke A, Gadella BM, De Rooij Protocols: See our web site at DG, Neefjes JJ, Groothuis TA, Oomen L, Brocks L, http://www.abnova.com/support/protocols.asp or product Ishikawa T, Borst P. Ono N, Van der Heijden I, Scheffer page for detailed protocols GL, Van de Wetering K, Van Deemter E, De Haas M, Boerke A, Gadella BM, De Rooij DG, Neefjes JJ, Specificity: M9II-3 reacts with an internal epitope of Groothuis TA, Oomen L, Brocks L, Ishikawa T, Borst P. -
Design and Methods of the Prevalence and Pharmacogenomics of Tenofovir Nephrotoxicity in HIV-Positive Adults in South-Western Nigeria Study Muzamil O
Hassan et al. BMC Nephrology (2020) 21:436 https://doi.org/10.1186/s12882-020-02082-3 STUDY PROTOCOL Open Access Design and methods of the prevalence and pharmacogenomics of tenofovir nephrotoxicity in HIV-positive adults in south-western Nigeria study Muzamil O. Hassan1,2* , Raquel Duarte3, Victor O. Mabayoje4, Caroline Dickens3, Akeem O. Lasisi5 and Saraladevi Naicker6 Abstract Background: Individuals of African descent are at higher risk of developing kidney disease than their European counterparts, and HIV infection is associated with increased risk of nephropathy. Despite a safe renal profile in the clinical trials, long-term use of tenofovir disoproxil fumarate (TDF) has been associated with proximal renal tubulopathy although the underlying mechanisms remain undetermined. We aim to establish the prevalence of and risk factors for TDF-induced kidney tubular dysfunction (KTD) among HIV-I and II individuals treated with TDF in south-west Nigeria. Association between TDF-induced KTD and genetic polymorphisms in renal drug transporter genes and the APOL1 (Apolipoprotein L1) gene will be examined. Methods: This study has two phases. An initial cross-sectional study will screen 3000 individuals attending the HIV clinics in south-west Nigeria for KTD to determine the prevalence and risk factors. This will be followed by a case- control study of 400 KTD cases and 400 matched controls to evaluate single nucleotide polymorphism (SNP) associations. Data on socio-demographics, risk factors for kidney dysfunction and HIV history will be collected by questionnaire. Blood and urine samples for measurements of severity of HIV disease (CD4 count, viral load) and renal function (creatinine, eGFR, phosphate, uric acid, glucose) will also be collected. -
ABCG1 (ABC8), the Human Homolog of the Drosophila White Gene, Is a Regulator of Macrophage Cholesterol and Phospholipid Transport
ABCG1 (ABC8), the human homolog of the Drosophila white gene, is a regulator of macrophage cholesterol and phospholipid transport Jochen Klucken*, Christa Bu¨ chler*, Evelyn Orso´ *, Wolfgang E. Kaminski*, Mustafa Porsch-Ozcu¨ ¨ ru¨ mez*, Gerhard Liebisch*, Michael Kapinsky*, Wendy Diederich*, Wolfgang Drobnik*, Michael Dean†, Rando Allikmets‡, and Gerd Schmitz*§ *Institute for Clinical Chemistry and Laboratory Medicine, University of Regensburg, 93042 Regensburg, Germany; †National Cancer Institute, Laboratory of Genomic Diversity, Frederick, MD 21702-1201; and ‡Departments of Ophthalmology and Pathology, Columbia University, Eye Research Addition, New York, NY 10032 Edited by Jan L. Breslow, The Rockefeller University, New York, NY, and approved November 3, 1999 (received for review June 14, 1999) Excessive uptake of atherogenic lipoproteins such as modified low- lesterol transport. Although several effector molecules have been density lipoprotein complexes by vascular macrophages leads to proposed to participate in macrophage cholesterol efflux (6, 9), foam cell formation, a critical step in atherogenesis. Cholesterol efflux including endogenous apolipoprotein E (10) and the cholesteryl mediated by high-density lipoproteins (HDL) constitutes a protective ester transfer protein (11), the detailed molecular mechanisms mechanism against macrophage lipid overloading. The molecular underlying cholesterol export in these cells have not yet been mechanisms underlying this reverse cholesterol transport process are characterized. currently not fully understood. To identify effector proteins that are Recently, mutations of the ATP-binding cassette (ABC) trans- involved in macrophage lipid uptake and release, we searched for porter ABCA1 gene have been causatively linked to familial HDL genes that are regulated during lipid influx and efflux in human deficiency and Tangier disease (12–14). -
Polymorphisms of the Multidrug Pump ABCG2: a Systematic Review of Their Effect on Protein Expression, Function, and Drug Pharmacokinetics
1521-009X/46/12/1886–1899$35.00 https://doi.org/10.1124/dmd.118.083030 DRUG METABOLISM AND DISPOSITION Drug Metab Dispos 46:1886–1899, December 2018 Copyright ª 2018 by The American Society for Pharmacology and Experimental Therapeutics Minireview Polymorphisms of the Multidrug Pump ABCG2: A Systematic Review of Their Effect on Protein Expression, Function, and Drug Pharmacokinetics Niall Heyes, Parth Kapoor, and Ian D. Kerr School of Life Sciences, Queen’s Medical Centre, University of Nottingham, Nottingham, United Kingdom Received June 12, 2018; accepted September 20, 2018 Downloaded from ABSTRACT The widespread expression and polyspecificity of the multidrug to improve outcomes in cancer patients treated with tyrosine ABCG2 efflux transporter make it an important determinant of the kinase inhibitors, but the reasons for this are yet to be estab- pharmacokinetics of a variety of substrate drugs. Null ABCG2 lished, and this residue’s role in the mechanism of the protein is expression has been linked to the Junior blood group. Polymor- unexplored by current biochemical and structural approaches. phisms affecting the expression or function of ABCG2 may have Research into the less-common polymorphisms is confined to dmd.aspetjournals.org clinically important roles in drug disposition and efficacy. The in vitro studies, with several polymorphisms shown to decrease most well-studied single nucleotide polymorphism (SNP), Q141K resistance to anticancer agents such as SN-38 and mitoxantrone. (421C>A), is shown to decrease ABCG2 expression and activity, In this review, we present a systematic analysis of the effects of resulting in increased total drug exposure and decreased re- ABCG2 polymorphisms on ABCG2 function and drug pharmaco- sistance to various substrates. -
Datasheet: MCA2682A647 Product Details
Datasheet: MCA2682A647 Description: RAT ANTI MOUSE ABCA2:Alexa Fluor® 647 Specificity: ABCA2 Other names: ATP BINDING CASSETTE 2 Format: ALEXA FLUOR® 647 Product Type: Monoclonal Antibody Clone: 9A2-51.3 Isotype: IgG2a Quantity: 100 TESTS/1ml Product Details Applications This product has been reported to work in the following applications. This information is derived from testing within our laboratories, peer-reviewed publications or personal communications from the originators. Please refer to references indicated for further information. For general protocol recommendations, please visit www.bio-rad-antibodies.com/protocols. Yes No Not Determined Suggested Dilution Flow Cytometry (1) Neat - 1/10 Where this product has not been tested for use in a particular technique this does not necessarily exclude its use in such procedures. Suggested working dilutions are given as a guide only. It is recommended that the user titrates the product for use in their own system using appropriate negative/positive controls. (1)Membrane permeabilisation is required for this application. Bio-Rad recommends the use of Leucoperm™ (Product Code BUF09) for this purpose. Target Species Mouse Product Form Purified IgG conjugated to Alexa Fluor® 647- liquid Max Ex/Em Fluorophore Excitation Max (nm) Emission Max (nm) Alexa Fluor®647 650 665 Preparation Purified IgG prepared by affinity chromatography on Protein G from tissue culture supernatant Buffer Solution Phosphate buffered saline Preservative 0.09% Sodium Azide (NaN3) Stabilisers 1% Bovine Serum Albumin Approx. Protein IgG concentration 0.05mg/ml Concentrations Immunogen ABCA2 transfected HeLa cells. External Database UniProt: Links Page 1 of 3 P41234 Related reagents Entrez Gene: 11305 Abca2 Related reagents Synonyms Abc2 Specificity Rat anti Mouse ABCA2 antibody, clone 9A2-51.3 recognizes murine adenosine triphosphate (ATP) binding cassette transporter 2 (ABCA2). -
The Role of ATP Binding Cassette Transporters in Tissue Defense and Organ Regeneration
0022-3565/09/3281-3–9$20.00 THE JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS Vol. 328, No. 1 Copyright © 2009 by The American Society for Pharmacology and Experimental Therapeutics 132225/3408067 JPET 328:3–9, 2009 Printed in U.S.A. Perspectives in Pharmacology The Role of ATP Binding Cassette Transporters in Tissue Defense and Organ Regeneration Miriam Huls, Frans G. M. Russel, and Rosalinde Masereeuw Department of Pharmacology and Toxicology, Radboud University Nijmegen Medical Centre, Nijmegen Centre for Molecular Life Sciences, The Netherlands Downloaded from Received July 22, 2008; accepted September 11, 2008 ABSTRACT ATP binding cassette (ABC) transporters are ATP-dependent tissues. The expression levels of BCRP and P-gp are tightly con- membrane proteins predominantly expressed in excretory organs, trolled and may determine the differentiation of SP cells toward jpet.aspetjournals.org such as the liver, intestine, blood-brain barrier, blood-testes bar- other more specialized cell types. Although their exact function in rier, placenta, and kidney. Here, they play an important role in these cells is still not clear, they may protect the cells by pumping the absorption, distribution, and excretion of drugs, xenobiotics, out toxicants and harmful products of oxidative stress. Transplan- and endogenous compounds. In addition, the ABC transporters, tation studies in animals revealed that bone marrow-derived SP P-glycoprotein (P-gp/ABCB1) and breast cancer resistance cells contribute to organ repopulation and tissue repair after dam- protein (BCRP/ABCG2), are highly expressed in a population of age, e.g., in liver and heart. The role of SP cells in regeneration of primitive stem cells: the side population (SP). -
The Role of Breast Cancer Resistance Protein in Acute Lymphoblastic Leukemia
Vol. 9, 5171–5177, November 1, 2003 Clinical Cancer Research 5171 Featured Article The Role of Breast Cancer Resistance Protein in Acute Lymphoblastic Leukemia Sabine L. A. Plasschaert, 0.013). The influence of FTC on mitoxantrone accumulation > P ;0.52 ؍ Dorina M. van der Kolk, Eveline S. J. M. de Bont, correlated with ABCG2 protein expression (r ؍ Willem A. Kamps, Kuniaki Morisaki, 0.001; n 43). The increase in mitoxantrone accumulation, when FTC was added to cells treated with both PSC 833 and Susan E. Bates, George L. Scheffer, MK-571, correlated with the ABCG2 expression in B-lineage Rik J. Scheper, Edo Vellenga, and ALL but not in T-lineage ALL. Sequencing the ABCG2 gene Elisabeth G. E. de Vries1 revealed no ABCG2 mutation at position 482 in patients who Divisions of Pediatric Oncology and Hematology [S. L. A. P., accumulated more rhodamine after FTC. E. S. J. M. d. B., W. A. K.], Hematology [D. M. v. d. K., E. V.], and Conclusions: This study shows that ABCG2 is ex- Medical Oncology [E. G. E. d. V.], University Hospital Groningen, pressed higher and functionally more active in B-lineage Groningen 9713 GZ, the Netherlands; Division of Pathology, Free than in T-lineage ALL. University Medical Center, Amsterdam, the Netherlands [G. L. S., R. J. S.]; and National Cancer Institute, Medicine Branch, NIH, Bethesda, Maryland 20892 [S. E. B.] Introduction The prognosis of ALL2 has improved over the last decades, in children even more than in adults. Still, many ALL patients Abstract do not achieve a complete remission or develop a relapse (1, 2). -
Hematopoietic Stem Cell Marker Antibody Panel (ABCG2, CD34, Store At: Prominin1)
Product datasheet [email protected] ARG30135 Package: 1 pair Hematopoietic Stem Cell Marker Antibody Panel (ABCG2, CD34, Store at: Prominin1) Component Cat No Component Name Host clonality Reactivity Application Package ARG62820 anti-CD34 antibody Mouse mAb Hu Blocking, FACS, 50 μg [4H11(APG)] ICC/IF ARG54138 anti-Prominin-1 Mouse mAb Hu WB 50 μl antibody [6H10-F1-C11] ARG51346 anti-ABCG2 / CD338 Rabbit pAb Hu WB 50 μl antibody ARG65350 Goat anti-Mouse IgG Goat pAb ELISA, IHC, WB 50 μl antibody (HRP) ARG65351 Goat anti-Rabbit IgG Goat pAb Rb ELISA, IHC, WB 50 μl antibody (HRP) Summary Product Description Hematopoietic Stem Cells (HSCs) are the mesodermal progenitor cells that give rise to all types of blood cells including monocytes, macrophages, neutrophils, basophils, eosinophils, erythrocytes and other cells related to lymphoid lineage. It has been a challenge for researchers using HSCs because of the difficulties to isolate them from a large pool of cells because the number of HSCs in each organism is scarce and they appear very similar to lymphocytes morphologically. CD34, CD133 and ABCG2 are reliable marker for HSCs. Using the antibodies included in arigo’s Hematopoietic Stem Cell Panel, researchers can easily identify HSCs from the blood cell population. Sutherland, D.R. et al. (1992) J. Hematother.1:115. Yin, A.H. et al. (1997) Blood 90:5002. Gehling, U.M. et al. (2000) Blood 95:3106. Zhou, S. et al. (2001) Nat. Med. 7:1028. Kim, M. et al. (2002) Clin. Cancer Res. 8:22. www.arigobio.com 1/2 Images ARG51346 anti-ABCG2 / CD338 antibody WB validated image Western Blot: extract from HL-60 cells stained with anti-ABCG2 / CD338 antibody ARG51346 ARG54138 anti-Prominin-1 antibody [6H10-F1-C11] WB validated image Western Blot: Prominin-1 in CaCo2 cell lysate stained with Prominin-1 antibody [6H10-F1-C11] (ARG54138) (diluted in 1: 1000).