Using Ulva (Chlorophyta) for the Production of Biomethane
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University of Copenhagen
Classification, Naming and Evolutionary History of Glycosyltransferases from Sequenced Green and Red Algal Genomes Ulvskov, Peter; Paiva, Dionisio Soares; Domozych, David; Harholt, Jesper Published in: P L o S One DOI: 10.1371/journal.pone.0076511 Publication date: 2013 Document version Publisher's PDF, also known as Version of record Citation for published version (APA): Ulvskov, P., Paiva, D. S., Domozych, D., & Harholt, J. (2013). Classification, Naming and Evolutionary History of Glycosyltransferases from Sequenced Green and Red Algal Genomes. P L o S One, 8(10), [e76511.]. https://doi.org/10.1371/journal.pone.0076511 Download date: 02. okt.. 2021 Classification, Naming and Evolutionary History of Glycosyltransferases from Sequenced Green and Red Algal Genomes Peter Ulvskov1, Dionisio Soares Paiva1¤, David Domozych2, Jesper Harholt1* 1 Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Denmark, 2 Department of Biology and Skidmore Microscopy Imaging Center, Skidmore College, Saratoga Springs, New York, United States of America Abstract The Archaeplastida consists of three lineages, Rhodophyta, Virideplantae and Glaucophyta. The extracellular matrix of most members of the Rhodophyta and Viridiplantae consists of carbohydrate-based or a highly glycosylated protein-based cell wall while the Glaucophyte covering is poorly resolved. In order to elucidate possible evolutionary links between the three advanced lineages in Archaeplastida, a genomic analysis was initiated. Fully sequenced genomes from -
Algae & Marine Plants of Point Reyes
Algae & Marine Plants of Point Reyes Green Algae or Chlorophyta Genus/Species Common Name Acrosiphonia coalita Green rope, Tangled weed Blidingia minima Blidingia minima var. vexata Dwarf sea hair Bryopsis corticulans Cladophora columbiana Green tuft alga Codium fragile subsp. californicum Sea staghorn Codium setchellii Smooth spongy cushion, Green spongy cushion Trentepohlia aurea Ulva californica Ulva fenestrata Sea lettuce Ulva intestinalis Sea hair, Sea lettuce, Gutweed, Grass kelp Ulva linza Ulva taeniata Urospora sp. Brown Algae or Ochrophyta Genus/Species Common Name Alaria marginata Ribbon kelp, Winged kelp Analipus japonicus Fir branch seaweed, Sea fir Coilodesme californica Dactylosiphon bullosus Desmarestia herbacea Desmarestia latifrons Egregia menziesii Feather boa Fucus distichus Bladderwrack, Rockweed Haplogloia andersonii Anderson's gooey brown Laminaria setchellii Southern stiff-stiped kelp Laminaria sinclairii Leathesia marina Sea cauliflower Melanosiphon intestinalis Twisted sea tubes Nereocystis luetkeana Bull kelp, Bullwhip kelp, Bladder wrack, Edible kelp, Ribbon kelp Pelvetiopsis limitata Petalonia fascia False kelp Petrospongium rugosum Phaeostrophion irregulare Sand-scoured false kelp Pterygophora californica Woody-stemmed kelp, Stalked kelp, Walking kelp Ralfsia sp. Silvetia compressa Rockweed Stephanocystis osmundacea Page 1 of 4 Red Algae or Rhodophyta Genus/Species Common Name Ahnfeltia fastigiata Bushy Ahnfelt's seaweed Ahnfeltiopsis linearis Anisocladella pacifica Bangia sp. Bossiella dichotoma Bossiella -
Exhaustive Reanalysis of Barcode Sequences from Public
Exhaustive reanalysis of barcode sequences from public repositories highlights ongoing misidentifications and impacts taxa diversity and distribution: a case study of the Sea Lettuce. Antoine Fort1, Marcus McHale1, Kevin Cascella2, Philippe Potin2, Marie-Mathilde Perrineau3, Philip Kerrison3, Elisabete da Costa4, Ricardo Calado4, Maria Domingues5, Isabel Costa Azevedo6, Isabel Sousa-Pinto6, Claire Gachon3, Adrie van der Werf7, Willem de Visser7, Johanna Beniers7, Henrice Jansen7, Michael Guiry1, and Ronan Sulpice1 1NUI Galway 2Station Biologique de Roscoff 3Scottish Association for Marine Science 4University of Aveiro 5Universidade de Aveiro 6University of Porto Interdisciplinary Centre of Marine and Environmental Research 7Wageningen University & Research November 24, 2020 Abstract Sea Lettuce (Ulva spp.; Ulvophyceae, Ulvales, Ulvaceae) is an important ecological and economical entity, with a worldwide distribution and is a well-known source of near-shore blooms blighting many coastlines. Species of Ulva are frequently misiden- tified in public repositories, including herbaria and gene banks, making species identification based on traditional barcoding hazardous. We investigated the species distribution of 295 individual distromatic foliose strains from the North East Atlantic by traditional barcoding or next generation sequencing. We found seven distinct species, and compared our results with all worldwide Ulva spp sequences present in the NCBI database for the three barcodes rbcL, tuf A and the ITS1. Our results demonstrate a large degree of species misidentification in the NCBI database. We estimate that 21% of the entries pertaining to foliose species are misannotated. In the extreme case of U. lactuca, 65% of the entries are erroneously labelled specimens of another Ulva species, typically U. fenestrata. In addition, 30% of U. -
Phylogenetic Placement of Botryococcus Braunii (Trebouxiophyceae) and Botryococcus Sudeticus Isolate Utex 2629 (Chlorophyceae)1
J. Phycol. 40, 412–423 (2004) r 2004 Phycological Society of America DOI: 10.1046/j.1529-8817.2004.03173.x PHYLOGENETIC PLACEMENT OF BOTRYOCOCCUS BRAUNII (TREBOUXIOPHYCEAE) AND BOTRYOCOCCUS SUDETICUS ISOLATE UTEX 2629 (CHLOROPHYCEAE)1 Hoda H. Senousy, Gordon W. Beakes, and Ethan Hack2 School of Biology, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, UK The phylogenetic placement of four isolates of a potential source of renewable energy in the form of Botryococcus braunii Ku¨tzing and of Botryococcus hydrocarbon fuels (Metzger et al. 1991, Metzger and sudeticus Lemmermann isolate UTEX 2629 was Largeau 1999, Banerjee et al. 2002). The best known investigated using sequences of the nuclear small species is Botryococcus braunii Ku¨tzing. This organism subunit (18S) rRNA gene. The B. braunii isolates has a worldwide distribution in fresh and brackish represent the A (two isolates), B, and L chemical water and is occasionally found in salt water. Although races. One isolate of B. braunii (CCAP 807/1; A race) it grows relatively slowly, it sometimes forms massive has a group I intron at Escherichia coli position 1046 blooms (Metzger et al. 1991, Tyson 1995). Botryococcus and isolate UTEX 2629 has group I introns at E. coli braunii strains differ in the hydrocarbons that they positions 516 and 1512. The rRNA sequences were accumulate, and they have been classified into three aligned with 53 previously reported rRNA se- chemical races, called A, B, and L. Strains in the A race quences from members of the Chlorophyta, includ- accumulate alkadienes; strains in the B race accumulate ing one reported for B. -
Marine Invertebrate Field Guide
Marine Invertebrate Field Guide Contents ANEMONES ....................................................................................................................................................................................... 2 AGGREGATING ANEMONE (ANTHOPLEURA ELEGANTISSIMA) ............................................................................................................................... 2 BROODING ANEMONE (EPIACTIS PROLIFERA) ................................................................................................................................................... 2 CHRISTMAS ANEMONE (URTICINA CRASSICORNIS) ............................................................................................................................................ 3 PLUMOSE ANEMONE (METRIDIUM SENILE) ..................................................................................................................................................... 3 BARNACLES ....................................................................................................................................................................................... 4 ACORN BARNACLE (BALANUS GLANDULA) ....................................................................................................................................................... 4 HAYSTACK BARNACLE (SEMIBALANUS CARIOSUS) .............................................................................................................................................. 4 CHITONS ........................................................................................................................................................................................... -
The Prostrate System of the Gelidiales: Diagnostic and Taxonomic Importance
Article in press - uncorrected proof Botanica Marina 49 (2006): 23–33 ᮊ 2006 by Walter de Gruyter • Berlin • New York. DOI 10.1515/BOT.2006.003 The prostrate system of the Gelidiales: diagnostic and taxonomic importance Cesira Perrone*, Gianni P. Felicini and internal rhizoidal filaments (the so-called hyphae, rhi- Antonella Bottalico zines, or endofibers) (Feldmann and Hamel 1934, 1936, Fan 1961, Lee and Kim 2003) and a triphasic isomorphic life history, whilst the family Gelidiellaceae (Fan 1961) is Department of Plant Biology and Pathology, University based on 1) the lack of hyphae and 2) the lack of sexual of Bari-Campus, Via E. Orabona 4, 70125 Bari, Italy, reproduction. Two distinct kinds of tetrasporangial sori, e-mail: [email protected] the acerosa-type and the pannosa-type, were described * Corresponding author in the genus Gelidiella J. Feldmann et Hamel (Feldmann and Hamel 1934, Fan 1961). Very recently, the new genus Parviphycus Santelices (Gelidiellaceae) has been pro- Abstract posed to accommodate those species previously assigned to Gelidiella that bear ‘‘pannosa-type’’ tetra- Despite numerous recent studies on the Gelidiales, most sporangial sori and show sub-apical cells under- taxa belonging to this order are still difficult to distinguish going a distichous pattern of division (Santelices 2004). when in the vegetative or tetrasporic state. This paper Gelidium J.V. Lamouroux and Pterocladia J. Agardh, describes in detail the morphological and ontogenetic two of the most widespread genera (which have been features of the prostrate system of the order with the aim confused) of the Gelidiaceae, are separated only by basic of validating its diagnostic and taxonomic significance. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
Transcriptional Landscapes of Lipid Producing Microalgae Benoît M
Transcriptional landscapes of lipid producing microalgae Benoît M. Carrères 2019 Transcriptional landscapes of lipid producing microalgae Benoî[email protected]:~$ ▮ Transcriptional landscapes of lipid producing microalgae Benoît Manuel Carrères Thesis committee Promotors Prof. Dr Vitor A. P. Martins dos Santos Professor of Systems and Synthetic Biology Wageningen University & Research Prof. Dr René H. Wij$els Professor of Bioprocess Engineering Wageningen University & Research Co-promotors Dr Peter J. Schaa% Associate professor* Systems and Synthetic Biology Wageningen University & Research Dr Dirk E. Martens Associate professor* Bioprocess Engineering Wageningen University & Research ,ther mem-ers Prof. Dr Alison Smith* University of Cam-ridge Prof. Dr. Dic+ de Ridder* Wageningen University & Research Dr Aalt D.). van Di#+* Wageningen University & Research Dr Ga-ino Sanche/(Pere/* Genetwister* Wageningen This research 0as cond1cted under the auspices of the .rad1ate School V2A. 3Advanced studies in Food Technology* Agro-iotechnology* Nutrition and Health Sciences). Transcriptional landscapes of lipid producing microalgae Benoît Manuel Carrères Thesis su-mitted in ful8lment of the re9uirements for the degree of doctor at Wageningen University -y the authority of the Rector Magnificus, Prof. Dr A.P.). Mol* in the presence of the Thesis' ommittee a%%ointed by the Academic Board to be defended in pu-lic on Wednesday 2; Novem-er 2;<= at 1.>; p.m in the Aula. Benoît Manuel Carrères 5ranscriptional landsca%es of lipid producing -
Plate. Acetabularia Schenckii
Training in Tropical Taxonomy 9-23 July, 2008 Tropical Field Phycology Workshop Field Guide to Common Marine Algae of the Bocas del Toro Area Margarita Rosa Albis Salas David Wilson Freshwater Jesse Alden Anna Fricke Olga Maria Camacho Hadad Kevin Miklasz Rachel Collin Andrea Eugenia Planas Orellana Martha Cecilia Díaz Ruiz Jimena Samper Villareal Amy Driskell Liz Sargent Cindy Fernández García Thomas Sauvage Ryan Fikes Samantha Schmitt Suzanne Fredericq Brian Wysor From July 9th-23rd, 2008, 11 graduate and 2 undergraduate students representing 6 countries (Colombia, Costa Rica, El Salvador, Germany, France and the US) participated in a 15-day Marine Science Network-sponsored workshop on Tropical Field Phycology. The students and instructors (Drs. Brian Wysor, Roger Williams University; Wilson Freshwater, University of North Carolina at Wilmington; Suzanne Fredericq, University of Louisiana at Lafayette) worked synergistically with the Smithsonian Institution's DNA Barcode initiative. As part of the Bocas Research Station's Training in Tropical Taxonomy program, lecture material included discussions of the current taxonomy of marine macroalgae; an overview and recent assessment of the diagnostic vegetative and reproductive morphological characters that differentiate orders, families, genera and species; and applications of molecular tools to pertinent questions in systematics. Instructors and students collected multiple samples of over 200 algal species by SCUBA diving, snorkeling and intertidal surveys. As part of the training in tropical taxonomy, many of these samples were used by the students to create a guide to the common seaweeds of the Bocas del Toro region. Herbarium specimens will be contributed to the Bocas station's reference collection and the University of Panama Herbarium. -
Download PDF Version
MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Ephemeral green and red seaweeds on variable salinity and/or disturbed eulittoral mixed substrata MarLIN – Marine Life Information Network Marine Evidence–based Sensitivity Assessment (MarESA) Review Dr Heidi Tillin & Georgina Budd 2016-03-30 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/habitats/detail/241]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: Tillin, H.M. & Budd, G., 2016. Ephemeral green and red seaweeds on variable salinity and/or disturbed eulittoral mixed substrata. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinhab.241.1 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this license are available here. Based on a work at www.marlin.ac.uk (page left blank) Ephemeral green and red seaweeds on variable salinity and/or disturbed eulittoral mixed substrata - Marine Life Date: 2016-03-30 Information Network Photographer: Anon. -
The Essentials of Marine Biotechnology. Frontiers in Marine Science [Online], 8, Article 629629
ROTTER, A., BARBIER, M., BERTONI, F. et al. 2021. The essentials of marine biotechnology. Frontiers in marine science [online], 8, article 629629. Available from: https://doi.org/10.3389/fmars.2021.629629 The essentials of marine biotechnology. ROTTER, A., BARBIER, M., BERTONI, F. et al. 2021 Copyright © 2021 Rotter, Barbier, Bertoni, Bones, Cancela, Carlsson, Carvalho, Cegłowska, Chirivella-Martorell, Conk Dalay, Cueto, Dailianis, Deniz, Díaz-Marrero, Drakulovic, Dubnika, Edwards, Einarsson, Erdoˇgan, Eroldoˇgan, Ezra, Fazi, FitzGerald, Gargan, Gaudêncio, Gligora Udoviˇc, Ivoševi´c DeNardis, Jónsdóttir, Kataržyt˙e, Klun, Kotta, Ktari, Ljubeši´c, Luki´c Bilela, Mandalakis, Massa-Gallucci, Matijošyt˙e, Mazur-Marzec, Mehiri, Nielsen, Novoveská, Overling˙e, Perale, Ramasamy, Rebours, Reinsch, Reyes, Rinkevich, Robbens, Röttinger, Rudovica, Sabotiˇc, Safarik, Talve, Tasdemir, Theodotou Schneider, Thomas, Toru´nska-Sitarz, Varese and Vasquez.. This article was first published in Frontiers in Marine Science on 16.03.2021. This document was downloaded from https://openair.rgu.ac.uk fmars-08-629629 March 10, 2021 Time: 14:8 # 1 REVIEW published: 16 March 2021 doi: 10.3389/fmars.2021.629629 The Essentials of Marine Biotechnology Ana Rotter1*, Michéle Barbier2, Francesco Bertoni3,4, Atle M. Bones5, M. Leonor Cancela6,7, Jens Carlsson8, Maria F. Carvalho9, Marta Cegłowska10, Jerónimo Chirivella-Martorell11, Meltem Conk Dalay12, Mercedes Cueto13, 14 15 16 17 Edited by: Thanos Dailianis , Irem Deniz , Ana R. Díaz-Marrero , Dragana Drakulovic , 18 19 -
MACROALGA Ulva Intestinalis (L.) OCCURRENCE in FRESHWATER ECOSYSTEMS of POLAND: a NEW LOCALITY in WIELKOPOLSKA
Teka Kom. Ochr. Kszt. Środ. Przyr. – OL PAN, 2008, 5, 126–135 MACROALGA Ulva intestinalis (L.) OCCURRENCE IN FRESHWATER ECOSYSTEMS OF POLAND: A NEW LOCALITY IN WIELKOPOLSKA Beata Messyasz, Andrzej Rybak Department of Hydrobiology, Adam Mickiewicz University, Umultowska str. 89, 61–614 Pozna ń, [email protected]; [email protected] Summary . A new locality of Ulva intestinalis was found near Kr ąplewo in the River Samica St ęszewska located in the Wielkopolski National Park region (Wielkopolska). On the basis of Carlson's index ranges, waters of the Samica St ęszewska river were qualified as eutrophic. In the river single thalluses of U. intestinalis which appeared by its banks were observed. The presence of this Ulva species thalluses in the Samica St ęszewska river confirmed the results of trophy exam- inations of this river. U. intestinalis is a species attached to eutrophic waters – both salty, slightly salty and inland. This next found site of this Ulva species is the 35th site on the inland area of Po- land and the third in the Wielkopolska region. Altogether 59 localities of Ulva genera representat- ives, including U. intestinalis and 4 other species ( U. compressa , U. flexuosa , U. paradoxa , U. prolifera ) and one subspecies ( U. flexuosa subsp. pilifera ), were noted in limnic waters of Poland. The new locality of U. intestinalis in freshwaters of Wielkopolska contributes new and essential information about the distribution of this originally marine species on the inland area of Poland. The authors indicated the lack of studies in the scope of the mass thalluses influence from the Ulva genera on inland ecosystems and on water organisms inhabiting them.