Kinetic Isotope Effects As a Guide to Transition State Geometries for the Intramolecular Cope and Wide Eliminaion Reactions. An

Total Page:16

File Type:pdf, Size:1020Kb

Kinetic Isotope Effects As a Guide to Transition State Geometries for the Intramolecular Cope and Wide Eliminaion Reactions. An J. Org. Chem. 1995,60, 4653-4656 4653 Kinetic Isotope Effects as a Guide to strength on the position of the transition structure along Transition State Geometries for the the reaction pathway for this five-membered Ei mech- Intramolecular Cope and Wide Eliminaion anism. Both reactants, although dipolar in nature, afford Reactions. An ab Initio MO Study neutral elimination products, which simplifies the overall theoretical treatment. Prior experience7with zwitterionic structures such as Robert D. Bach,* Carlos Gonzalez, Jose L. Andres, and H. Bernard Schlegel water oxide (HzO+-O-) suggested that the MP2/6-31G* level of theory would provide adequate geometries for Department of Chemistry, Wayne State University, dipolar reactants 1,3,and 5 (Figures 1and 218 Classical Detroit, Michigan 48202 barrier heights for TS-2 and TS-4 are predicted to be 28.2 and 10.8 kcal/mol, respectively, at the MP2/6-31G* level Received February 6, 1995 of theory. Activation barriers of 29.1 and 11.4 kcaumol were found for these two elimination reactions, respec- The quality of geometries given by electronic structure tively, using full fourth-order Moller-Plesset perturba- calculations may be readily verified by direct comparison tion theory The bar- with experimental data. Excellent agreement between (MP4SDTQ/6-31G*//MP2/6-3lG*). rier for the Cope elimination is consistent with experiment theory and experiment is commonplace even at the (AH$= 24.3-29.4 kcal/mol for 2-phenylethyldimethyl- Hartree-Fock level of theory provided that an adequate amine oxide)."" The lower barrier (AM* = 17.7 kcal/ basis set is employed. When post-Hartree-Fock methods mol) for the ylide mechanism is a consequence of the more are included, the energetics of a great many reactions highly basic carbon atom that is reflected in a much may be accurately determined, as confirmed by matching earlier transition state. Accordingly, the Cope elimina- with experimentally derived thermochemistry. In the tion is endothermic by 4.9 kcal/mol, while the overall gas phase, calculated activation barriers are also found ylide reaction affording isolated products is exothermic to be quite reliable. However, an assessment of the by 45.1 kcal/mol. The C,j-H1 bond elongation is only 6% accuracy of transition state geometries remains a pri- in TS-4 compared to 27% in the Cope elimination. In mary goal of the applied quantum chemist. An experi- both transition structures the internal bond angles mentally determined kinetic isotope effect (KIE) is one involving hydrogen abstraction are noticeably smaller of the few available tools that can probe the geometry of than the anticipated -108" H-0-N and H-C-N bond a transition state.' A number of studies have been angles (Figure 1).lb The percent C-N bond stretch in reported in which theoretically calculated KIE have been TS-2 (34%) and TS-4 (18%) also gives an indication of used in an effort to predict transition state structures.2 the position of the TS along the reaction coordinate, as In this paper we describe a direct comparison of calcu- does the extent of double-bond formation indicated by the lated KIE to experimental values for several intra- change in bond distances. Another indication in molecular elimination reactions to evaluate the accuracy C-C the amount of double-bond character in the TS is the of transition state geometries determined by ab initio approach toward planarity at and C,j as measured by methods. C, the sum of the three valence angles (28,)of the incipient The intramolecular Cope elimination (TS-2),involving alkene (Figure 1). The 20" change experienced by C, in the thermal decomposition of an amine oxide, provides the cope elimination indicates a change in rehybridization an ideal test case for theoretical study of both primary nearly twice as large as that in the ylide reaction. and secondary isotope effects. Stereochemical3and iso- topic labeling studies4have established this reaction to The secondary KIE, attending the change in hybridiza- be an intramolecular syn-elimination. Deuterium label- tion from sp3 to sp2, is still thought to be primarily a ing studies5 have also established a syn-periplanar consequence of the change in out-of-plane bending fre- transition state for the related Wittig modification6 of the Cope elimination. Comparison with the corresponding (7)(a) Bach, R. D.; Owensby, A. L.; Gonzalez, C.; Schlegel, H. B.; ylide pathway (TS-4)provides a probe of the effect of base McDouall, J. J. W. J. Am. Chem. SOC.1991, 113, 6001. (b) Bach, R. D.; Andres, J. L.; Owensby, A. L.; Schlegel, H. B.; McDouall, J. J. W. J.Am. Chem. SOC.1992,114,7207. (c)Bach, R. D.; Su, M.-D.; Schlegel, (1)ia) Shiner, V. J., Jr. In Isotope Efects in Chemical Reactions; H. B. J. Am. Chem. SOC.1994, 116, 5379. Collins, C. J., Bowman, N. S.,Eds.; Van Nostrand Reinhold: New York, (8)All geometriesga given in the figures utilized gradient geometry 1970; Chapter 2. ib) Melander, L.; Saunders, W. H., Jr.Reaction Rates optimationgbat both HF and MP2 levels of theory. Analytical second of Isotopic Molecules; Wiley: New York, 1980. (c) Gajewski, J. J. derivatives and vibrational frequencies at the HF/6-31G* and MP2/ Isotopes in Organic Chemistry, Vol. 7 Secondary and Solvent Isotope 6-31G* levels were computed using Gaussianga and CADPAC,gc Effects;Buncel, E., Lee, C. C., Eds.; Elsevier: Amsterdam, 1987. respectively. The rate constants were calculated without scaling by (2)(a) Dewar, M. J. S.; Ford, G. P. J.Am. Chem. SOC.1977,99,8343. using nonvariational transition state theorylo8 including Wigner's ib) Saunders, M.; Laidig, K. E.; Wolfsberg, M. J. Am. Chem. SOC.1989, tunneling correction.lOb 111, 8989. (c)Chantranupong, L.; Wildman, T. A. J. Am. Chem. SOC. (9) (a)Frisch, M. J.; Head-Gordon, M.; Trucks, G. W.; Foresman, J. 1990, 112, 4151. (d) Wolfe, S.; Hoz, S.; Kim, C.-K.; Yang, K. J. Am. B.; Schlegel, H. B.; Raghavachari, K.; Robb, M. A.; Binkley, J. S.; Chem. SOC.1990, 112, 4186. (e) Axelsson, B. S.; Matsson, 0.; Gonzalez, C.; Defrees, D. J.; Fox,-D. J.; Whiteside, R. A,; Seeger, R.; Langstrom, B. J.Am. Chem. SOC.1989,112,6661. (DJensen, F.; Houk, Melius, C. F.; Baker, J.; Martin, R. L.; Kahn, L. R.; Stewart, J. J. P.; K. N. J. Am. Chem. SOC.1987,109, 3139. Topiol, S.; Pople, J. A. Gaussian 90; Gaussian: Pittsburgh, PA 1990. (3)(a) Cram, D. J.;McCarty, J. E. J.Am. Chem. SOC.1964, 76,5740. tb) Schlegel, H. B. J. Comput. Chem. 1982, 3, 214. (c)Amos, R. D.; ib) Cope, A. C.; LeBel, N. A. J. Am. Chem. SOC.1960, 82, 4656. (c) Rice, J. E. CADPAC: Cambridge Analytic Derivatives Package, Issue Saunders, W. H., Jr.; Cockerill, A. F. Mechanisms of Elimination 4, Cambridge, 1988. Reactions; Wiley-Interscience: New York, 1973. (10)(a) Steinfeld, J. I.; Francisco, J. S.; Hase, W. L. Chemical (4)ia) Bach, R. D.; Andrzejewski, D.; Dusold, L. R. J. Org. Chem. Kinetics and Dynamics; Prentice Hall: Englewood Cliffs, NJ, 1989. 1973, 38, 1742. (b) Bach, R. D.; Braden, M. L. J. Org. Chem. 1991, ib)Wigner, E. P. 2. Phys. Chem. 1932, B19, 203. (c)Bell, R. P. Trans. 56, 7194. Faraday SOC.1969, 55, 1. id) Bell, R. P. The Proton in Chemistry, (5)(a) Bach, R. D.; Knight, J. W.; Braden, M. L. J.Am. Chem. SOC. 2nd ed.; Chapman and Hall: London, 1973; Chapter 12. 1991,113,4712. ib) Bach, R. D.; Bair, K. W.; Andrzejewski, D. J.Am. ( 11)(a) Chiao, W.-B.; Saunders, W. H., Jr. J. Am. Chem. SOC.1978, Chem. SOC.1972, 94, 8608. (c)Bach, R. D.; Andrzejewski, D. J. Am. 100, 2802. (b) Wright, D. R.; Sims, L. B.; Fry, A. J. Am. Chem. SOC. Chem. SOC.1971,93, 7118. 1983,105, 3714. ic) Lewis, D. E.; Sims, L. B.; Yamataka, H.; Mckenna, (6)Witting, G.; Polster, R. JustusLiebigs Ann. Chem. 1967, 612, J. J.Am. Chem. SOC.1980,102, 7411. (d)Miller, D. J.;Subramanian, 102. Rm.; Saunders, W. H., Jr. J. Am. Chem. SOC.1981, 103, 3519. 0022-3263/95/1960-4653$09.00/00 1995 American Chemical Society 4654 J. Org. Chem., Vol. 60, No. 14, 1995 Notes H0OLNHz -t HpCZCHz zei =329.430 <H,CpC, = 108.35' <ONC C =0.05" <H C C N = -174.63" <HICgta!l = 0.00" <Oh8 e! - 58.95O <HICgka!l-= -51.55" E~pp-209.63556 E~pp-209.59066 .hE*~p2=26.2 E~p4=-209.65452 Eyp4~-209.60752 AE*MP~=29.1 cH~C~C,= 107.77" <CNC C = 15.67' CH C C N = -172.13' <H1Cp?&h = -11 .Ole <Ck8 8 = 67.91" <HICpkak = -51.55' EMpz= -1 73.73893 Eyp2= -1 73.721 78 AE*~pzs10.8 EMPI= -1 73.78776 E~p4=-173.74344 AE*~prs11.4 Figure 1. Geometries (MP2/6-31G*)for the starting materials and transitions states of the Cope elimination reaction (TS-2) and its respective ylide elimination (TS-4) with experimental conditions shown over the arrow. Total energies are in au, and activation barriers at the level indicated given in kcaymol. E~pz- -286.77435 E~pp-286.73340 AEL~pp25.7 Figure 2. Geometry and transition state (MP2/6-31G*)for the Cope elimination reaction (TS-6) affording 1,3-butadiene and hydroxylamine. Energies are in au and relative energies in kcaymol. Bond distances are in A and angles in degrees. quency.12 The above analysis of the geometry of the two agreement with the secondary KIE is particularly grati- transition structures is quite consistent with the mag- fying.
Recommended publications
  • Kinetic Isotope Effects and Hydrogen Tunnelling in PCET Oxidations of Ascorbate: New Insights Into Aqueous Chemistry?
    molecules Review Kinetic Isotope Effects and Hydrogen Tunnelling in PCET Oxidations of Ascorbate: New Insights into Aqueous Chemistry? Ana Karkovi´cMarkovi´c,Cvijeta Jakobuši´cBrala * , Viktor Pilepi´cand Stanko Urši´c* Faculty of Pharmacy and Biochemistry, University of Zagreb, A. Kovaˇci´ca1, 10 000 Zagreb, Croatia; [email protected] (A.K.M.); [email protected] (V.P.) * Correspondence: [email protected] (C.J.B.); [email protected] (S.U.); Tel.: +385-01-4870-267 (C.J.B.) Academic Editor: Poul Erik Hansen Received: 17 February 2020; Accepted: 21 March 2020; Published: 23 March 2020 Abstract: Recent experimental studies of kinetic isotope effects (KIE-s) and hydrogen tunnelling comprising three proton-coupled electron transfer (PCET) oxidations of ascorbate monoanion, (a) in aqueous reaction solutions, (b) in the mixed water-organic cosolvent systems, (c) in aqueous solutions of various salts and (d) in fairly diluted aqueous solutions of the various partial hydrophobes are reviewed. A number of new insights into the wealth of the kinetic isotope phenomena in the PCET reactions have been obtained. The modulation of KIE-s and hydrogen tunnelling observed when partially hydrophobic solutes are added into water reaction solution, in the case of fairly diluted solutions is revealed as the strong linear correlation of the isotopic ratios of the Arrhenius prefactors Ah/Ad and the isotopic differences in activation energies DEa (D,H). The observation has been proposed to be a signature of the involvement of the collective intermolecular excitonic vibrational dynamics of water in activation processes and aqueous chemistry. Keywords: kinetic isotope effects; ascorbate PCET reactions; hydrogen tunnelling; water vibrational dynamics; activation processes 1.
    [Show full text]
  • Kinetic Isotope Effect Lecture.Key
    Kinetic Isotope Effect Chapter 8, sections 8.1.1-8.1.3 Isotope Effects • Traditional kinetics studies do not provide information as to what bonds are broken/formed and changes in hybridization that occur during the rate- limiting step of a reaction. • Isotope effects can provide this information. • Substituting one iosotope for another at or near an atom at which bonds are breaking or rehybridizing typically leads to a change in the rate of the reaction. • The effect of replacing H with D often is relatively large when the bonds being broken or formed involve H. This effect can be measured routinely. • The effects of isotope replacement for other elements have been studied, but the effects are typically small and sometimes difficult to quantify. Isotope Effects: Experimental • An isotope effect is measured to determine if the bond at which the isotopic substitution has been made changes in some manner during the rate-limiting step. • The isotope effect is expressed as a ratio of rate constants: the rate constant for the reaction with the natural abundance isotope over the rate constant for the reaction with the altered isotope. [ for H/D substitutions: kH/kD] • For a hydrogen isotope effect, typically a first order (or pseudo-first order) rate constant for the reaction of interest is determined. The natural abundance of deuterium (D) and tritium (T) [0.015% and 1x10-4% respectively] is so low that their contribution to the observed rate is negligible. • The magnitude of the isotope effect (deviation of kH/kD from unity) provides information about the reaction mechanism.
    [Show full text]
  • Kinetic Isotope Effect in the Hydrogenation and Deuteration of Graphene
    Kinetic isotope effect in the hydrogenation GR-ThP3 and deuteration of graphene A. Nefedov, A. Paris, N. Verbitsky, Y. Wang, A. V. Fedorov, D. Haberer, M. Oehzelt, L. Petaccia, D. Usachov, D.V. Vyalikh, H. Sachdev, Ch. Wöll, M. Knupfer, B. Büchner, L. Calliari, L. V. Yashina, S. Irle, and A. Grüneis Motivation Sample preparation and layout of the experiment Experimental facilities: BESSY II and Elletra Kinetic isotope effects (KIEs), i.e. a different reaction constant for isotopes, are important phenomena in physical chemistry. They Ni(111),10 nm Graphene Experimental stations @ BESSY II ARPES @ Elletra have been studied for a long time in their relation to the activation and rate of chemical reactions. A significant contribution to KIE are vibrational zero-point energy (ZPE) effects that upshift the energy of a chemical bond by half the phonon frequency of its W(110) W(110) W(110) constituents. Hence, KIEs are easy to observe in the hydrogen isotopes (deuterium and tritium) due to their large relative mass Ni difference and were studied, even at the single-molecule level for hydrogen transfer in organic reactions including acid and base Sputtering, Flashing up to 1700°C, Ni evaporation, CVD from C3H6 catalysis, enzyme reactions and catalytic decomposition. Most of these reactions were carried out with H and D in a molecular Annealing in O2 at 1000°C Thickness control: QCM Characterization: LEED; XPS configuration and it was found that the reaction constant for the D compounds is lower than for the corresponding H compounds. Characterization: LEED, XPS Characterization: LEED These results are explained by the larger ZPE for H bonds, which results in a lower potential energy barrier to be overcome for H- bonds breaking as compared to D bonds.
    [Show full text]
  • Haghnegahdar M.A.*, Schauble E.A., and Young E.D. (2017)
    PUBLICATIONS Global Biogeochemical Cycles 12 13 RESEARCH ARTICLE A model for CH2D2 and CH3D as complementary 10.1002/2017GB005655 tracers for the budget of atmospheric CH4 Key Points: 1 1 1 13 Mojhgan A. Haghnegahdar , Edwin A. Schauble , and Edward D. Young • CH3D is expected to trace atmospheric methane sources 1 12 Department of Earth, Planetary, and Space Sciences, University of California, Los Angeles, California, USA • CH2D2 is expected to trace both atmospheric methane sources and sinks 13 12 • The reactions of methane with •OH Abstract We present a theoretical model to investigate the potential of CH3D and CH2D2, the doubly and Cl• generate a distinct signature of substituted mass-18 isotopologues of methane, as tools for tracking atmospheric methane sources and sinks. Δ12 higher CH2D2 relative to the source We use electronic structure methods to estimate kinetic isotope fractionations associated with the major composition sink reactions of methane in air (reactions with OH and Cl radicals) and combine literature data with 13 12 reconnaissance measurements of the relative abundances of CH3D and CH2D2 to estimate the Supporting Information: compositions of the largest atmospheric sources. This model atmospheric budget is investigated with a • Supporting Information S1 simplified box model in which we explore both steady state and dynamical (nonsteady state) conditions fl Correspondence to: triggered by changes in emission or sink uxes. The steady state model predicts that sink reactions will 12 M. A. Haghnegahdar, generate a marked (>100‰) clumped isotope excess in atmospheric Δ CH2D2 relative to the net source [email protected] 12 composition. CH2D2 measurements may thus be useful for tracing both atmospheric source and sink fluxes.
    [Show full text]
  • Strategic Applications of Tandem Reactions in Complex Natural Product Synthesis
    Strategic Applications of Tandem Reactions in Complex Natural Product Synthesis: Rapid Access to the (Iso)Cyclocitrinol Core Christopher W. Plummer Submitted in partial fulfillment of the Requirement for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences Columbia University 2012 © 2012 Christopher Wainwright Plummer All Rights Reserved Abstract Strategic Applications of Tandem Reactions in Complex Natural Product Synthesis: Rapid Access to the (Iso)Cyclocitrinol Core Christopher W. Plummer This thesis describes the efforts of Professor James Leighton and myself toward the synthesis of the tetracyclic core of a class of steroidal natural products known as the cyclocitrinols. Our initial work in this area was performed on racemic model systems in order to validate our ring contraction-Cope rearrangement strategy. Novel chemistry was then identified to access the functionalized core in enantio-enriched form. Finally, in line with our efforts to probe the transition state of our key tandem Claisen-Cope reaction, additional substrates were prepared supporting our proposed transition state and improving the efficiency of this transformation. Table of Contents Chapter I. Background………………………………………………………....……………1 1.1: Isolation and Characterization of the Cyclocitrinols 1 1.2: Biosynthesis and Previous Synthetic Approach 2 1.3: Retrosynthetic Analysis 5 1.4: Previous Synthetic Efforts in the Leighton Laboratory 9 Chapter II. Model Studies……………………………………………………………….….13 2.1: 1st Generation Macrolactone Approach 13 2.2:
    [Show full text]
  • Hydrogen Bond-Directed Stereospecific Interactions in (A) General Synthesis of Chiral Vicinal Diamines and (B) Generation of Helical Chirality with Amino Acids
    HYDROGEN BOND-DIRECTED STEREOSPECIFIC INTERACTIONS IN (A) GENERAL SYNTHESIS OF CHIRAL VICINAL DIAMINES AND (B) GENERATION OF HELICAL CHIRALITY WITH AMINO ACIDS by Hyunwoo Kim A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Graduate Department of Chemistry University of Toronto © Copyright by Hyunwoo Kim, 2009 Hydrogen Bond-Directed Stereospecific Interactions in (A) General Synthesis of Chiral Vicinal Diamines and (B) Generation of Helical Chirality with Amino Acids Hyunwoo Kim Doctor of Philosophy 2009 Department of Chemistry University of Toronto ABSTRACT Hydrogen bonding interactions have been applied to the synthesis of chiral vicinal diamines and the generation of helical chirality. A stereospecific synthesis of vicinal diamines was developed by using the diaza-Cope rearrangement reaction driven by resonance-assisted hydrogen bonds (RAHBs). This process for making a wide variety of chiral diamines requires only a single starting chiral diamine, 1,2-bis(2-hydroxyphenyl)-1,2-diaminoethane (HPEN) and aldehydes. Experimental and computational studies reveal that this process provides one of the simplest and most versatile approaches to preparing chiral vicinal diamines including not only C2 symmetric diaryl and dialkyl diamines but also unsymmetrical alkyl-aryl and aryl-aryl diamines with excellent yields and enantiopurities. Weak forces affecting kinetics and thermodynamics of the diaza-Cope rearrangement were systematically studied by combining experimental and computational approaches. These forces include hydrogen bonding effects, electronic effects, steric effects, and oxyanion effects. As an example of tuning diamine catalysts, a vicinal diamine-catalyzed synthesis of warfarin is described. Detailed mechanistic studies lead to a new mechanism involving diimine intermediates.
    [Show full text]
  • Observation of Kinetic Isotope Effect in Electrocatalysis with Fully
    Observation of Kinetic Isotope Effect in Electrocatalysis with Fully Deuterated Ultrapure Electrolytes Ken Sakaushi,1 1Center for Green Research on Energy and Environmental Materials, National Institute for Materials Science, 1-1 Namiki, Tsukuba, 305-0044 Ibaraki, Japan Corresponding to K.S.: [email protected] Abstract Kinetic isotope effect (KIE) is a common physicochemical effect to elucidate complicated microscopic reaction mechanism in biological, chemical and physical systems. Especially, the exchange of hydrogen to deuterium is a standard approach to investigate kinetics and pathways of a wide spectrum of key reactions involving proton transfer. However, KIE in electrocatalysis is still challenge. One main reason is owing to the high sensitivity to impurities in electrochemical systems. Aiming to establish an appropriate approach to observe KIE in electrocatalysis, we investigated KIE in electrocatalysis by using fully deuterated ultrapure electrolytes. With these electrolytes, we studied oxygen reduction reaction with platinum catalyst, which is well-known to be sensitive to impurity, as the model systems. In conclusion, the electrode processes in these systems can be strongly influenced by a purity of a selected deuterated electrolyte, especially in case of alkaline conditions. Therefore a highly pure deuterated electrolyte is indispensable to study microscopic electrode processes of electrocatalysis by analyzing KIE. This work shows a key criterion and methods to observe a reliable KIE in electrocatalytic systems, and therefore,
    [Show full text]
  • Anion Relay Cyclopropanation and Aryl Vinyl Cyclopropane Cope Rearrangements By
    Anion Relay Cyclopropanation and Aryl Vinyl Cyclopropane Cope Rearrangements By Kevin Michael Allegre B.Sc., The University of Kansas, 2013 Submitted to the graduate degree program in Chemistry and the Graduate Faculty of the University of Kansas in partial fulfillment of the requirements for the degree of Doctor of Philosophy. Chair: Jon A. Tunge Paul R. Hanson Helena Malinakova Michael Rubin Ryan A. Altman Date Defended: 18 July 2019 The dissertation committee for Kevin M. Allegre certifies that this is the approved version of the following dissertation: Anion Relay Cyclopropanation and Aryl Vinyl Cyclopropane Cope Rearrangements Chair: Jon A. Tunge Date Approved: 24 July 2019 ii Abstract Kevin M. Allegre and Jon A. Tunge Department of Chemistry, July 2019 University of Kansas Anion Relay Chemistry is a powerful tool for the rapid development of molecular complexity in an operationally simple manner. Much of the work in this field has been pioneered and developed by the Smith group, whose work has primarily focused on silicon and phosphorus Brook rearrangements to effect anion relay. Presented herein is the development of a retro-Claisen condensation protocol to effect anion relay in the synthesis of vinyl cyclopropanes, and subsequent aromatic Cope rearrangement of those vinyl cyclopropanes. This protocol provides a supplementary method of anion relay utilizing readily accessible nucleophiles, which obviates the need for synthesis of alkyl silanes or phosphines as starting materials. Chapter 1 is a review of anion relay chemistry, which focuses on through-space anion relay over 3 or more bonds. It covers both new developments and applications to total synthesis of through-space anion relay more than three bonds since the field was last reviewed by Smith in 2008.
    [Show full text]
  • Kinetic Isotope Effect and Its Use for Mechanism Elucidation
    ISIC - LSPN Kinetic Isotope Effect: Principles and its use in mechanism investigation Group Seminar 05.03.2020 Alexandre Leclair 1 Important literature Modern Physical Organic Chemistry by Eric. V. Anslyn and Dennis A. Dougherty - University Science Books: Sausalito, CA, 2006 → Chapter 8 – Experiments Related to Thermodynamics and Kinetics – 421-441. Annual Reports on NMR Spectroscopy, Chapter 3 – Application of NMR spectroscopy in Isotope Effects Studies by Stefan Jankowski - (Ed.: G.A. Webb), Academic Press, 2009, 149–191. E. M. Simmons, J. F. Hartwig, Angew. Chem. Int. Ed. 2012, 51, 3066-3072. M. Gomez-Gallego, M. A. Sierra, Chem. Rev. 2011, 111, 4857-4963 2 Table of contents I. Origins of the Kinetic Isotope Effect II. Types of Kinetic Isotope Effect III.Classical experiments IV.KIE measured at natural-abundance V. Conclusion and Outlook 3 Table of contents I. Origins of the Kinetic Isotope Effect II. Types of Kinetic Isotope Effect III.Classical experiments IV.KIE measured at natural-abundance V. Conclusion and Outlook 4 Origins of the Kinetic Isotope Effect (KIE) Origin of isotope effects: • Difference in frequencies of various vibrational modes of a molecule → No important difference in the potential energy of the system → However, difference in vibrational states, quantified by the formula: en = (n + ½)hν, where n= 0,1,2,… • The vibrational modes for bond stretches → dominated by n=0, with e0=1/2hν e0 = zero-point energy (ZPE) Morse potential and vibrational energy levels: M. Gomez-Gallego, M. A. Sierra, Chem. Rev. 2011, 111, 4857-4963 5 Origins of the Kinetic Isotope Effect (KIE) Importance of the reduced mass and force constant: en = (n + ½)hν, where n= 0,1,2,… 1 퐤 1 Vibration frequency ν : Proportional to ν= 퐦 2π 퐦퐫 퐫 With mr: reduced mass and k: force constant m m 1 2 m1: “Heavy” atom (C, N, O, …) 퐦퐫 = m1 + m2 m2: “Light” atom (H, D, …) Implications in KIE: H and D different mass (1.00797 / 2.01410) So for C-H vs C-D: mr(C-H) < mr(C-D) → νC-H > νC-D ZPE(C-H) > ZPE(C-D) Scheme: A.
    [Show full text]
  • Elimination Reactions Are Described
    Introduction In this module, different types of elimination reactions are described. From a practical standpoint, elimination reactions widely used for the generation of double and triple bonds in compounds from a saturated precursor molecule. The presence of a good leaving group is a prerequisite in most elimination reactions. Traditional classification of elimination reactions, in terms of the molecularity of the reaction is employed. How the changes in the nature of the substrate as well as reaction conditions affect the mechanism of elimination are subsequently discussed. The stereochemical requirements for elimination in a given substrate and its consequence in the product stereochemistry is emphasized. ELIMINATION REACTIONS Objective and Outline beta-eliminations E1, E2 and E1cB mechanisms Stereochemical considerations of these reactions Examples of E1, E2 and E1cB reactions Alpha eliminations and generation of carbene I. Basics Elimination reactions involve the loss of fragments or groups from a molecule to generate multiple bonds. A generalized equation is shown below for 1,2-elimination wherein the X and Y from two adjacent carbon atoms are removed, elimination C C C C -XY X Y Three major types of elimination reactions are: α-elimination: two atoms or groups are removed from the same atom. It is also known as 1,1-elimination. H R R C X C + HX R Both H and X are removed from carbon atom here R Carbene β-elimination: loss of atoms or groups on adjacent atoms. It is also H H known as 1,2- elimination. R C C R R HC CH R X H γ-elimination: loss of atoms or groups from the 1st and 3rd positions as shown below.
    [Show full text]
  • Kinetic Isotope Effects of [Superscript 12]CH[Subscript 3]D##+#OH and [Superscript 13]CH[Subscript 3]D##+#OH from 278 to 313#K
    Kinetic isotope effects of [superscript 12]CH[subscript 3]D##+#OH and [superscript 13]CH[subscript 3]D##+#OH from 278 to 313#K The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Joelsson, L. M. T. et al. “Kinetic Isotope Effects of 12CH3D + OH and 13CH3D + OH from 278 to 313 K.” Atmospheric Chemistry and Physics 16.7 (2016): 4439–4449. As Published http://dx.doi.org/10.5194/acp-16-4439-2016 Publisher Copernicus GmbH Version Final published version Citable link http://hdl.handle.net/1721.1/110743 Terms of Use Creative Commons Attribution Detailed Terms http://creativecommons.org/licenses/by/3.0/ Atmos. Chem. Phys., 16, 4439–4449, 2016 www.atmos-chem-phys.net/16/4439/2016/ doi:10.5194/acp-16-4439-2016 © Author(s) 2016. CC Attribution 3.0 License. 12 13 Kinetic isotope effects of CH3D C OH and CH3D C OH from 278 to 313 K L. M. T. Joelsson1,3, J. A. Schmidt1, E. J. K. Nilsson2, T. Blunier3, D. W. T. Griffith4, S. Ono5, and M. S. Johnson1 1Department of Chemistry, University of Copenhagen, Copenhagen, Denmark 2Division of Combustion Physics, Department of Physics, Lund University, Lund, Sweden 3Centre for Ice and Climate (CIC), Niels Bohr Institute, University of Copenhagen, Copenhagen, Denmark 4University of Wollongong, Department of Chemistry, Wollongong, Australia 5Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA Correspondence to: M. S. Johnson ([email protected]) Received: 16 September 2015 – Published in Atmos. Chem.
    [Show full text]
  • Synthesis and Reactions of 4,5-Homotropone and 4,5-Dimethylenetropone Richard Anthony Fugiel Iowa State University
    Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1974 Synthesis and reactions of 4,5-homotropone and 4,5-dimethylenetropone Richard Anthony Fugiel Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Organic Chemistry Commons Recommended Citation Fugiel, Richard Anthony, "Synthesis and reactions of 4,5-homotropone and 4,5-dimethylenetropone " (1974). Retrospective Theses and Dissertations. 5986. https://lib.dr.iastate.edu/rtd/5986 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORIVIATIOIM TO USERS This material was produced from a microfilm copy of the original document. While the most advanced technological means to photograph and reproduce this document have been used, the quality is heavily dependent upon the quality of the original submitted. The following explanation of techniques is provided to help you understand markings or patterns which may appear on this reproduction. 1.The sign or "target" for pages apparently lacking from the document photographed is "Missing Page(s)". If it was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. This may have necessitated cutting thru an image and duplicating adjacent pages to insure you complete continuity. 2. When an image on the film is obliterated with a large round black mark, it is an indication that the photographer suspected that the copy may have moved during exposure and thus cause a blurred image.
    [Show full text]