An Introduction to Random Graph Theory and Network Science
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From Static to Temporal Network Theory: Applications to Functional Brain Connectivity
METHODS From static to temporal network theory: Applications to functional brain connectivity William Hedley Thompson1, Per Brantefors1, and Peter Fransson1 1Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden Keywords: Resting-state, Temporal network theory, Temporal networks, Functional connectome, Dynamic functional connectivity Downloaded from http://direct.mit.edu/netn/article-pdf/1/2/69/1091947/netn_a_00011.pdf by guest on 28 September 2021 ABSTRACT an open access journal Network neuroscience has become an established paradigm to tackle questions related to the functional and structural connectome of the brain. Recently, interest has been growing in examining the temporal dynamics of the brain’s network activity. Although different approaches to capturing fluctuations in brain connectivity have been proposed, there have been few attempts to quantify these fluctuations using temporal network theory. This theory is an extension of network theory that has been successfully applied to the modeling of dynamic processes in economics, social sciences, and engineering article but it has not been adopted to a great extent within network neuroscience. The objective of this article is twofold: (i) to present a detailed description of the central tenets of temporal network theory and describe its measures, and; (ii) to apply these measures to a resting-state fMRI dataset to illustrate their utility. Furthermore, we discuss the interpretation of temporal network theory in the context of the dynamic functional brain connectome. All the temporal network measures and plotting functions described in this article are freely available as the Python Citation: Thompson, W. H., Brantefors, package Teneto. P., & Fransson, P. (2017). From static to temporal network theory: Applications to functional brain connectivity. -
Are the Different Layers of a Social Network Conveying the Same
Manivannan et al. REGULAR ARTICLE Are the different layers of a social network conveying the same information? Ajaykumar Manivannan1, W. Quin Yow1, Roland Bouffanais1y and Alain Barrat2,3*y *Correspondence: [email protected] Abstract 1Singapore University of Technology and Design, 8 Comprehensive and quantitative investigations of social theories and phenomena Somapah Road, 487372, Singapore increasingly benefit from the vast breadth of data describing human social 2 Aix Marseille Univ, Universit´ede relations, which is now available within the realm of computational social science. Toulon, CNRS, CPT, Marseille, France Such data are, however, typically proxies for one of the many interaction layers 3Data Science Laboratory, composing social networks, which can be defined in many ways and are typically Institute for Scientific Interchange composed of communication of various types (e.g., phone calls, face-to-face (ISI) Foundation, Torino, Italy Full list of author information is communication, etc.). As a result, many studies focus on one single layer, available at the end of the article corresponding to the data at hand. Several studies have, however, shown that y Equal contributor these layers are not interchangeable, despite the presence of a certain level of correlations between them. Here, we investigate whether different layers of interactions among individuals lead to similar conclusions with respect to the presence of homophily patterns in a population|homophily represents one of the widest studied phenomenon in social networks. To this aim, we consider a dataset describing interactions and links of various nature in a population of Asian students with diverse nationalities, first language and gender. -
Basic Models and Questions in Statistical Network Analysis
Basic models and questions in statistical network analysis Mikl´osZ. R´acz ∗ with S´ebastienBubeck y September 12, 2016 Abstract Extracting information from large graphs has become an important statistical problem since network data is now common in various fields. In this minicourse we will investigate the most natural statistical questions for three canonical probabilistic models of networks: (i) community detection in the stochastic block model, (ii) finding the embedding of a random geometric graph, and (iii) finding the original vertex in a preferential attachment tree. Along the way we will cover many interesting topics in probability theory such as P´olya urns, large deviation theory, concentration of measure in high dimension, entropic central limit theorems, and more. Outline: • Lecture 1: A primer on exact recovery in the general stochastic block model. • Lecture 2: Estimating the dimension of a random geometric graph on a high-dimensional sphere. • Lecture 3: Introduction to entropic central limit theorems and a proof of the fundamental limits of dimension estimation in random geometric graphs. • Lectures 4 & 5: Confidence sets for the root in uniform and preferential attachment trees. Acknowledgements These notes were prepared for a minicourse presented at University of Washington during June 6{10, 2016, and at the XX Brazilian School of Probability held at the S~aoCarlos campus of Universidade de S~aoPaulo during July 4{9, 2016. We thank the organizers of the Brazilian School of Probability, Paulo Faria da Veiga, Roberto Imbuzeiro Oliveira, Leandro Pimentel, and Luiz Renato Fontes, for inviting us to present a minicourse on this topic. We also thank Sham Kakade, Anna Karlin, and Marina Meila for help with organizing at University of Washington. -
Temporal Network Metrics and Their Application to Real World Networks
Temporal network metrics and their application to real world networks John Kit Tang Robinson College University of Cambridge 2011 This dissertation is submitted for the degree of Doctor of Philosophy Declaration This dissertation is the result of my own work and includes nothing which is the outcome of work done in collaboration except where specifically indicated in the text. This dissertation does not exceed the regulation length of 60 000 words, including tables and footnotes. Summary The analysis of real social, biological and technological networks has attracted a lot of attention as technological advances have given us a wealth of empirical data. Classic studies looked at analysing static or aggregated networks, i.e., networks that do not change over time or built as the results of aggregation of information over a certain period of time. Given the soaring collections of measurements related to very large, real network traces, researchers are quickly starting to realise that connections are inherently varying over time and exhibit more dimensionality than static analysis can capture. This motivates the work in this dissertation: new tools for temporal complex network analysis are required when analysing real networks that inherently change over time. Firstly, we introduce the temporal graph model and formalise the notion of shortest temporal paths, used extensively in graph theory, and show that as static graphs ignore the time order of contacts, the available links are overestimated and the true shortest paths are underestimated. In addition, contrary to intuition, we find that slowly evolving graphs can be efficient for information dissemination due to small-world behaviour in temporal graphs. -
Networkx Reference Release 1.9.1
NetworkX Reference Release 1.9.1 Aric Hagberg, Dan Schult, Pieter Swart September 20, 2014 CONTENTS 1 Overview 1 1.1 Who uses NetworkX?..........................................1 1.2 Goals...................................................1 1.3 The Python programming language...................................1 1.4 Free software...............................................2 1.5 History..................................................2 2 Introduction 3 2.1 NetworkX Basics.............................................3 2.2 Nodes and Edges.............................................4 3 Graph types 9 3.1 Which graph class should I use?.....................................9 3.2 Basic graph types.............................................9 4 Algorithms 127 4.1 Approximation.............................................. 127 4.2 Assortativity............................................... 132 4.3 Bipartite................................................. 141 4.4 Blockmodeling.............................................. 161 4.5 Boundary................................................. 162 4.6 Centrality................................................. 163 4.7 Chordal.................................................. 184 4.8 Clique.................................................. 187 4.9 Clustering................................................ 190 4.10 Communities............................................... 193 4.11 Components............................................... 194 4.12 Connectivity.............................................. -
Latent Distance Estimation for Random Geometric Graphs ∗
Latent Distance Estimation for Random Geometric Graphs ∗ Ernesto Araya Valdivia Laboratoire de Math´ematiquesd'Orsay (LMO) Universit´eParis-Sud 91405 Orsay Cedex France Yohann De Castro Ecole des Ponts ParisTech-CERMICS 6 et 8 avenue Blaise Pascal, Cit´eDescartes Champs sur Marne, 77455 Marne la Vall´ee,Cedex 2 France Abstract: Random geometric graphs are a popular choice for a latent points generative model for networks. Their definition is based on a sample of n points X1;X2; ··· ;Xn on d−1 the Euclidean sphere S which represents the latent positions of nodes of the network. The connection probabilities between the nodes are determined by an unknown function (referred to as the \link" function) evaluated at the distance between the latent points. We introduce a spectral estimator of the pairwise distance between latent points and we prove that its rate of convergence is the same as the nonparametric estimation of a d−1 function on S , up to a logarithmic factor. In addition, we provide an efficient spectral algorithm to compute this estimator without any knowledge on the nonparametric link function. As a byproduct, our method can also consistently estimate the dimension d of the latent space. MSC 2010 subject classifications: Primary 68Q32; secondary 60F99, 68T01. Keywords and phrases: Graphon model, Random Geometric Graph, Latent distances estimation, Latent position graph, Spectral methods. 1. Introduction Random geometric graph (RGG) models have received attention lately as alternative to some simpler yet unrealistic models as the ubiquitous Erd¨os-R´enyi model [11]. They are generative latent point models for graphs, where it is assumed that each node has associated a latent d point in a metric space (usually the Euclidean unit sphere or the unit cube in R ) and the connection probability between two nodes depends on the position of their associated latent points. -
Temporal Network Approach to Explore Bike Sharing Usage Patterns
Temporal Network Approach to Explore Bike Sharing Usage Patterns Aizhan Tlebaldinova1, Aliya Nugumanova1, Yerzhan Baiburin1, Zheniskul Zhantassova2, Markhaba Karmenova2 and Andrey Ivanov3 1Laboratory of Digital Technologies and Modeling, S. Amanzholov East Kazakhstan State University, Shakarim Street, Ust-Kamenogorsk, Kazakhstan 2Department of Computer Modeling and Information Technologies, S. Amanzholov East Kazakhstan State University, Shakarim Street, Ust-Kamenogorsk, Kazakhstan 3JSC «Bipek Auto» Kazakhstan, Bazhov Street, Ust-Kamenogorsk, Kazakhstan Keywords: Bike Sharing, Temporal Network, Betweenness Centrality, Clustering, Time Series. Abstract: The bike-sharing systems have been attracting increase research attention due to their great potential in developing smart and green cities. On the other hand, the mathematical aspects of their design and operation generate a lot of interesting challenges for researchers in the field of modeling, optimization and data mining. The mathematical apparatus that can be used to study bike sharing systems is not limited only to optimization methods, space-time analysis or predictive analytics. In this paper, we use temporal network methodology to identify stable trends and patterns in the operation of the bike sharing system using one of the largest bike-sharing framework CitiBike NYC as an example. 1 INTRODUCTION cluster centralization measurements for one hour of a certain day of the week into one value and decode The bike-sharing systems have been attracting it into a color cell. In order to make heat map more increase research attention due to their great contrast and effective, we propose an unusual way of potential in developing smart and green cities. On collapsing data, in which only the highest cluster the other hand, the mathematical aspects of their centralization values are taken into account. -
Nonlinearity + Networks: a 2020 Vision
Nonlinearity + Networks: A 2020 Vision Mason A. Porter Abstract I briefly survey several fascinating topics in networks and nonlinearity. I highlight a few methods and ideas, including several of personal interest, that I anticipate to be especially important during the next several years. These topics include temporal networks (in which the entities and/or their interactions change in time), stochastic and deterministic dynamical processes on networks, adaptive networks (in which a dynamical process on a network is coupled to dynamics of network structure), and network structure and dynamics that include “higher-order” interactions (which involve three or more entities in a network). I draw examples from a variety of scenarios, including contagion dynamics, opinion models, waves, and coupled oscillators. 1 Introduction Network analysis is one of the most exciting areas of applied and industrial math- ematics [121, 141, 143]. It is at the forefront of numerous and diverse applications throughout the sciences, engineering, technology, and the humanities. The study of networks combines tools from numerous areas of mathematics, including graph theory, linear algebra, probability, statistics, optimization, statistical mechanics, sci- entific computation, and nonlinear dynamics. In this chapter, I give a short overview of popular and state-of-the-art topics in network science. My discussions of these topics, which I draw preferentially from ones that relate to nonlinear and complex systems, will be terse, but I will cite many review articles and highlight specific research papers for those who seek more details. This chapter is not a review or even a survey; instead, I give my perspective on the short-term and medium-term future of network analysis in applied mathematics for 2020 and beyond. -
The Domination Number of On-Line Social Networks and Random Geometric Graphs?
The domination number of on-line social networks and random geometric graphs? Anthony Bonato1, Marc Lozier1, Dieter Mitsche2, Xavier P´erez-Gim´enez1, and Pawe lPra lat1 1 Ryerson University, Toronto, Canada, [email protected], [email protected], [email protected], [email protected] 2 Universit´ede Nice Sophia-Antipolis, Nice, France [email protected] Abstract. We consider the domination number for on-line social networks, both in a stochastic net- work model, and for real-world, networked data. Asymptotic sublinear bounds are rigorously derived for the domination number of graphs generated by the memoryless geometric protean random graph model. We establish sublinear bounds for the domination number of graphs in the Facebook 100 data set, and these bounds are well-correlated with those predicted by the stochastic model. In addition, we derive the asymptotic value of the domination number in classical random geometric graphs. 1. Introduction On-line social networks (or OSNs) such as Facebook have emerged as a hot topic within the network science community. Several studies suggest OSNs satisfy many properties in common with other complex networks, such as: power-law degree distributions [2, 13], high local cluster- ing [36], constant [36] or even shrinking diameter with network size [23], densification [23], and localized information flow bottlenecks [12, 24]. Several models were designed to simulate these properties [19, 20], and one model that rigorously asymptotically captures all these properties is the geometric protean model (GEO-P) [5{7] (see [16, 25, 30, 31] for models where various ranking schemes were first used, and which inspired the GEO-P model). -
Dyhcn: Dynamic Hypergraph Convolutional Networks
Under review as a conference paper at ICLR 2021 DYHCN: DYNAMIC HYPERGRAPH CONVOLUTIONAL NETWORKS Anonymous authors Paper under double-blind review ABSTRACT Hypergraph Convolutional Network (HCN) has become a default choice for cap- turing high-order relations among nodes, i.e., encoding the structure of a hyper- graph. However, existing HCN models ignore the dynamic evolution of hyper- graphs in the real-world scenarios, i.e., nodes and hyperedges in a hypergraph change dynamically over time. To capture the evolution of high-order relations and facilitate relevant analytic tasks, we formulate dynamic hypergraph and devise the Dynamic Hypergraph Convolutional Networks (DyHCN). In general, DyHCN consists of a Hypergraph Convolution (HC) to encode the hypergraph structure at a time point and a Temporal Evolution module (TE) to capture the varying of the relations. The HC is delicately designed by equipping inner attention and outer at- tention, which adaptively aggregate nodes’ features to hyperedge and estimate the importance of each hyperedge connected to the centroid node, respectively. Exten- sive experiments on the Tiigo and Stocktwits datasets show that DyHCN achieves superior performance over existing methods, which implies the effectiveness of capturing the property of dynamic hypergraphs by HC and TE modules. 1 INTRODUCTION Graph Convolutional Network (GCN) Scarselli et al. (2008) extends deep neural networks to process graph data, which encodes the relations between nodes via propagating node features over the graph structure. GCN has become a promising solution in a wide spectral of graph analytic tasks, such as relation detection Schlichtkrull et al. (2018) and recommendation Ying et al. (2018). An emer- gent direction of GCN research is extending the graph covolution operations to hypergraphs, i.e., hypergraph convolutional networks Zhu et al. -
Clique Colourings of Geometric Graphs
CLIQUE COLOURINGS OF GEOMETRIC GRAPHS COLIN MCDIARMID, DIETER MITSCHE, AND PAWELPRA LAT Abstract. A clique colouring of a graph is a colouring of the vertices such that no maximal clique is monochromatic (ignoring isolated vertices). The least number of colours in such a colouring is the clique chromatic number. Given n points x1;:::; xn in the plane, and a threshold r > 0, the corre- sponding geometric graph has vertex set fv1; : : : ; vng, and distinct vi and vj are adjacent when the Euclidean distance between xi and xj is at most r. We investigate the clique chromatic number of such graphs. We first show that the clique chromatic number is at most 9 for any geometric graph in the plane, and briefly consider geometric graphs in higher dimensions. Then we study the asymptotic behaviour of the clique chromatic number for the random geometric graph G(n; r) in the plane, where n random points are independently and uniformly distributed in a suitable square. We see that as r increases from 0, with high probability the clique chromatic number is 1 for very small r, then 2 for small r, then at least 3 for larger r, and finally drops back to 2. 1. Introduction and main results In this section we introduce clique colourings and geometric graphs; and we present our main results, on clique colourings of deterministic and random geometric graphs. Recall that a proper colouring of a graph is a labeling of its vertices with colours such that no two vertices sharing the same edge have the same colour; and the smallest number of colours in a proper colouring of a graph G = (V; E) is its chromatic number, denoted by χ(G). -
Betweenness Centrality in Dense Random Geometric Networks
Betweenness Centrality in Dense Random Geometric Networks Alexander P. Giles Orestis Georgiou Carl P. Dettmann School of Mathematics Toshiba Telecommunications Research Laboratory School of Mathematics University of Bristol 32 Queen Square University of Bristol Bristol, UK, BS8 1TW Bristol, UK, BS1 4ND Bristol, UK, BS8 1TW [email protected] [email protected] [email protected] Abstract—Random geometric networks are mathematical are routed in a multi-hop fashion between any two nodes that structures consisting of a set of nodes placed randomly within wish to communicate, allowing much larger, more flexible d a bounded set V ⊆ R mutually coupled with a probability de- networks (due to the lack of pre-established infrastructure or pendent on their Euclidean separation, and are the classic model used within the expanding field of ad-hoc wireless networks. In the need to be within range of a switch). Commercial ad hoc order to rank the importance of the network’s communicating networks are nowadays realised under Wi-Fi Direct standards, nodes, we consider the well established ‘betweenness’ centrality enabling device-to-device (D2D) offloading in LTE cellular measure (quantifying how often a node is on a shortest path of networks [5]. links between any pair of nodes), providing an analytic treatment This new diversity in machine betweenness needs to be of betweenness within a random graph model by deriving a closed form expression for the expected betweenness of a node understood, and moreover can be harnessed in at least three placed within a dense random geometric network formed inside separate ways: historically, in 2005 Gupta et al.