Multicollinearity (And Model Validation)
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												Structured Eigenvalue Condition Numbers and Linearizations for Matrix Polynomials
¢¢¢¢¢¢¢¢¢¢¢ ¢¢¢¢¢¢¢¢¢¢¢ ¢¢¢¢¢¢¢¢¢¢¢ ¢¢¢¢¢¢¢¢¢¢¢ Eidgen¨ossische Ecole polytechnique f´ed´erale de Zurich ¢¢¢¢¢¢¢¢¢¢¢ ¢¢¢¢¢¢¢¢¢¢¢ ¢¢¢¢¢¢¢¢¢¢¢ ¢¢¢¢¢¢¢¢¢¢¢ Technische Hochschule Politecnico federale di Zurigo ¢¢¢¢¢¢¢¢¢¢¢ ¢¢¢¢¢¢¢¢¢¢¢ ¢¢¢¢¢¢¢¢¢¢¢ ¢¢¢¢¢¢¢¢¢¢¢ Zu¨rich Swiss Federal Institute of Technology Zurich Structured eigenvalue condition numbers and linearizations for matrix polynomials B. Adhikari∗, R. Alam† and D. Kressner Research Report No. 2009-01 January 2009 Seminar fu¨r Angewandte Mathematik Eidgen¨ossische Technische Hochschule CH-8092 Zu¨rich Switzerland ∗Department of Mathematics, Indian Institute of Technology Guwahati, India, E-mail: [email protected] †Department of Mathematics, Indian Institute of Technology Guwahati, India, E-mail: rafi[email protected], rafi[email protected], Fax: +91-361-2690762/2582649. Structured eigenvalue condition numbers and linearizations for matrix polynomials Bibhas Adhikari∗ Rafikul Alam† Daniel Kressner‡. Abstract. This work is concerned with eigenvalue problems for structured matrix polynomials, including complex symmetric, Hermitian, even, odd, palindromic, and anti-palindromic matrix poly- nomials. Most numerical approaches to solving such eigenvalue problems proceed by linearizing the matrix polynomial into a matrix pencil of larger size. Recently, linearizations have been classified for which the pencil reflects the structure of the original polynomial. A question of practical impor- tance is whether this process of linearization increases the sensitivity of the eigenvalue with respect to structured perturbations. For all structures under consideration, we show that this is not the case: there is always a linearization for which the structured condition number of an eigenvalue does not differ significantly. This implies, for example, that a structure-preserving algorithm applied to the linearization fully benefits from a potentially low structured eigenvalue condition number of the original matrix polynomial. Keywords. Eigenvalue problem, matrix polynomial, linearization, structured condition num- ber. - 
												
												Condition Number Bounds for Problems with Integer Coefficients*
Condition Number Bounds for Problems with Integer Coefficients* Gregorio Malajovich Departamento de Matem´atica Aplicada, Universidade Federal do Rio de Janeiro. Caixa Postal 68530, CEP 21945-970, Rio de Janeiro, RJ, Brasil. E-mail: [email protected] An explicit a priori bound for the condition number associated to each of the following problems is given: general linear equation solving, least squares, non-symmetric eigenvalue problems, solving univariate polynomials, and solv- ing systems of multivariate polynomials. It is assumed that the input has integer coefficients and is not on the degeneracy locus of the respective prob- lem (i.e., the condition number is finite). Our bounds are stated in terms of the dimension and of the bit-size of the input. In the same setting, bounds are given for the speed of convergence of the following iterative algorithms: QR iteration without shift for the symmetric eigenvalue problem, and Graeffe iteration for univariate polynomials. Key Words: condition number, height, complexity 1. INTRODUCTION In most of the numerical analysis literature, complexity and stability of numerical algorithms are usually estimated in terms of the problem instance dimension and of a \condition number". For instance, the complexity of solving an n n linear system Ax = b is usually estimated in terms of the dimension n×(when the input actually consists of n(n + 1) real numbers) and the condition number κ(A) (see section 2.1 for the definition of the condition number). There is a set of problems instances with κ(A) = , and in most cases it makes no sense to solve these instances. - 
												
												Multiple Discriminant Analysis
1 MULTIPLE DISCRIMINANT ANALYSIS DR. HEMAL PANDYA 2 INTRODUCTION • The original dichotomous discriminant analysis was developed by Sir Ronald Fisher in 1936. • Discriminant Analysis is a Dependence technique. • Discriminant Analysis is used to predict group membership. • This technique is used to classify individuals/objects into one of alternative groups on the basis of a set of predictor variables (Independent variables) . • The dependent variable in discriminant analysis is categorical and on a nominal scale, whereas the independent variables are either interval or ratio scale in nature. • When there are two groups (categories) of dependent variable, it is a case of two group discriminant analysis. • When there are more than two groups (categories) of dependent variable, it is a case of multiple discriminant analysis. 3 INTRODUCTION • Discriminant Analysis is applicable in situations in which the total sample can be divided into groups based on a non-metric dependent variable. • Example:- male-female - high-medium-low • The primary objective of multiple discriminant analysis are to understand group differences and to predict the likelihood that an entity (individual or object) will belong to a particular class or group based on several independent variables. 4 ASSUMPTIONS OF DISCRIMINANT ANALYSIS • NO Multicollinearity • Multivariate Normality • Independence of Observations • Homoscedasticity • No Outliers • Adequate Sample Size • Linearity (for LDA) 5 ASSUMPTIONS OF DISCRIMINANT ANALYSIS • The assumptions of discriminant analysis are as under. The analysis is quite sensitive to outliers and the size of the smallest group must be larger than the number of predictor variables. • Non-Multicollinearity: If one of the independent variables is very highly correlated with another, or one is a function (e.g., the sum) of other independents, then the tolerance value for that variable will approach 0 and the matrix will not have a unique discriminant solution. - 
												
												An Overview and Application of Discriminant Analysis in Data Analysis
IOSR Journal of Mathematics (IOSR-JM) e-ISSN: 2278-5728, p-ISSN: 2319-765X. Volume 11, Issue 1 Ver. V (Jan - Feb. 2015), PP 12-15 www.iosrjournals.org An Overview and Application of Discriminant Analysis in Data Analysis Alayande, S. Ayinla1 Bashiru Kehinde Adekunle2 Department of Mathematical Sciences College of Natural Sciences Redeemer’s University Mowe, Redemption City Ogun state, Nigeria Department of Mathematical and Physical science College of Science, Engineering &Technology Osun State University Abstract: The paper shows that Discriminant analysis as a general research technique can be very useful in the investigation of various aspects of a multi-variate research problem. It is sometimes preferable than logistic regression especially when the sample size is very small and the assumptions are met. Application of it to the failed industry in Nigeria shows that the derived model appeared outperform previous model build since the model can exhibit true ex ante predictive ability for a period of about 3 years subsequent. Keywords: Factor Analysis, Multiple Discriminant Analysis, Multicollinearity I. Introduction In different areas of applications the term "discriminant analysis" has come to imply distinct meanings, uses, roles, etc. In the fields of learning, psychology, guidance, and others, it has been used for prediction (e.g., Alexakos, 1966; Chastian, 1969; Stahmann, 1969); in the study of classroom instruction it has been used as a variable reduction technique (e.g., Anderson, Walberg, & Welch, 1969); and in various fields it has been used as an adjunct to MANOVA (e.g., Saupe, 1965; Spain & D'Costa, Note 2). The term is now beginning to be interpreted as a unified approach in the solution of a research problem involving a com-parison of two or more populations characterized by multi-response data. - 
												
												A Robust Hybrid of Lasso and Ridge Regression
A robust hybrid of lasso and ridge regression Art B. Owen Stanford University October 2006 Abstract Ridge regression and the lasso are regularized versions of least squares regression using L2 and L1 penalties respectively, on the coefficient vector. To make these regressions more robust we may replace least squares with Huber’s criterion which is a hybrid of squared error (for relatively small errors) and absolute error (for relatively large ones). A reversed version of Huber’s criterion can be used as a hybrid penalty function. Relatively small coefficients contribute their L1 norm to this penalty while larger ones cause it to grow quadratically. This hybrid sets some coefficients to 0 (as lasso does) while shrinking the larger coefficients the way ridge regression does. Both the Huber and reversed Huber penalty functions employ a scale parameter. We provide an objective function that is jointly convex in the regression coefficient vector and these two scale parameters. 1 Introduction We consider here the regression problem of predicting y ∈ R based on z ∈ Rd. The training data are pairs (zi, yi) for i = 1, . , n. We suppose that each vector p of predictor vectors zi gets turned into a feature vector xi ∈ R via zi = φ(xi) for some fixed function φ. The predictor for y is linear in the features, taking the form µ + x0β where β ∈ Rp. In ridge regression (Hoerl and Kennard, 1970) we minimize over β, a criterion of the form n p X 0 2 X 2 (yi − µ − xiβ) + λ βj , (1) i=1 j=1 for a ridge parameter λ ∈ [0, ∞]. - 
												
												S41598-018-25035-1.Pdf
www.nature.com/scientificreports OPEN An Innovative Approach for The Integration of Proteomics and Metabolomics Data In Severe Received: 23 October 2017 Accepted: 9 April 2018 Septic Shock Patients Stratifed for Published: xx xx xxxx Mortality Alice Cambiaghi1, Ramón Díaz2, Julia Bauzá Martinez2, Antonia Odena2, Laura Brunelli3, Pietro Caironi4,5, Serge Masson3, Giuseppe Baselli1, Giuseppe Ristagno 3, Luciano Gattinoni6, Eliandre de Oliveira2, Roberta Pastorelli3 & Manuela Ferrario 1 In this work, we examined plasma metabolome, proteome and clinical features in patients with severe septic shock enrolled in the multicenter ALBIOS study. The objective was to identify changes in the levels of metabolites involved in septic shock progression and to integrate this information with the variation occurring in proteins and clinical data. Mass spectrometry-based targeted metabolomics and untargeted proteomics allowed us to quantify absolute metabolites concentration and relative proteins abundance. We computed the ratio D7/D1 to take into account their variation from day 1 (D1) to day 7 (D7) after shock diagnosis. Patients were divided into two groups according to 28-day mortality. Three diferent elastic net logistic regression models were built: one on metabolites only, one on metabolites and proteins and one to integrate metabolomics and proteomics data with clinical parameters. Linear discriminant analysis and Partial least squares Discriminant Analysis were also implemented. All the obtained models correctly classifed the observations in the testing set. By looking at the variable importance (VIP) and the selected features, the integration of metabolomics with proteomics data showed the importance of circulating lipids and coagulation cascade in septic shock progression, thus capturing a further layer of biological information complementary to metabolomics information. - 
												
												Lasso Reference Manual Release 17
STATA LASSO REFERENCE MANUAL RELEASE 17 ® A Stata Press Publication StataCorp LLC College Station, Texas Copyright c 1985–2021 StataCorp LLC All rights reserved Version 17 Published by Stata Press, 4905 Lakeway Drive, College Station, Texas 77845 Typeset in TEX ISBN-10: 1-59718-337-7 ISBN-13: 978-1-59718-337-6 This manual is protected by copyright. All rights are reserved. No part of this manual may be reproduced, stored in a retrieval system, or transcribed, in any form or by any means—electronic, mechanical, photocopy, recording, or otherwise—without the prior written permission of StataCorp LLC unless permitted subject to the terms and conditions of a license granted to you by StataCorp LLC to use the software and documentation. No license, express or implied, by estoppel or otherwise, to any intellectual property rights is granted by this document. StataCorp provides this manual “as is” without warranty of any kind, either expressed or implied, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose. StataCorp may make improvements and/or changes in the product(s) and the program(s) described in this manual at any time and without notice. The software described in this manual is furnished under a license agreement or nondisclosure agreement. The software may be copied only in accordance with the terms of the agreement. It is against the law to copy the software onto DVD, CD, disk, diskette, tape, or any other medium for any purpose other than backup or archival purposes. The automobile dataset appearing on the accompanying media is Copyright c 1979 by Consumers Union of U.S., Inc., Yonkers, NY 10703-1057 and is reproduced by permission from CONSUMER REPORTS, April 1979. - 
												
												Overfitting Can Be Harmless for Basis Pursuit, but Only to a Degree
Overfitting Can Be Harmless for Basis Pursuit, But Only to a Degree Peizhong Ju Xiaojun Lin Jia Liu School of ECE School of ECE Department of ECE Purdue University Purdue University The Ohio State University West Lafayette, IN 47906 West Lafayette, IN 47906 Columbus, OH 43210 [email protected] [email protected] [email protected] Abstract Recently, there have been significant interests in studying the so-called “double- descent” of the generalization error of linear regression models under the overpa- rameterized and overfitting regime, with the hope that such analysis may provide the first step towards understanding why overparameterized deep neural networks (DNN) still generalize well. However, to date most of these studies focused on the min `2-norm solution that overfits the data. In contrast, in this paper we study the overfitting solution that minimizes the `1-norm, which is known as Basis Pursuit (BP) in the compressed sensing literature. Under a sparse true linear regression model with p i.i.d. Gaussian features, we show that for a large range of p up to a limit that grows exponentially with the number of samples n, with high probability the model error of BP is upper bounded by a value that decreases with p. To the best of our knowledge, this is the first analytical result in the literature establishing the double-descent of overfitting BP for finite n and p. Further, our results reveal significant differences between the double-descent of BP and min `2-norm solu- tions. Specifically, the double-descent upper-bound of BP is independent of the signal strength, and for high SNR and sparse models the descent-floor of BP can be much lower and wider than that of min `2-norm solutions. - 
												
												The Eigenvalue Problem: Perturbation Theory
Jim Lambers MAT 610 Summer Session 2009-10 Lecture 13 Notes These notes correspond to Sections 7.2 and 8.1 in the text. The Eigenvalue Problem: Perturbation Theory The Unsymmetric Eigenvalue Problem Just as the problem of solving a system of linear equations Ax = b can be sensitive to pertur- bations in the data, the problem of computing the eigenvalues of a matrix can also be sensitive to perturbations in the matrix. We will now obtain some results concerning the extent of this sensitivity. Suppose that A is obtained by perturbing a diagonal matrix D by a matrix F whose diagonal entries are zero; that is, A = D + F . If is an eigenvalue of A with corresponding eigenvector x, then we have (D − I)x + F x = 0: If is not equal to any of the diagonal entries of A, then D − I is nonsingular and we have x = −(D − I)−1F x: Taking 1-norms of both sides, we obtain −1 −1 kxk1 = k(D − I) F xk1 ≤ k(D − I) F k1kxk1; which yields n −1 X jfijj k(D − I) F k1 = max ≥ 1: 1≤i≤n jdii − j j=1;j6=i It follows that for some i, 1 ≤ i ≤ n, satisfies n X jdii − j ≤ jfijj: j=1;j6=i That is, lies within one of the Gerschgorin circles in the complex plane, that has center aii and radius n X ri = jaijj: j=1;j6=i 1 This is result is known as the Gerschgorin Circle Theorem. Example The eigenvalues of the matrix 2 −5 −1 1 3 A = 4 −2 2 −1 5 1 −3 7 are (A) = f6:4971; 2:7930; −5:2902g: The Gerschgorin disks are D1 = fz 2 C j jz − 7j ≤ 4g;D2 = fz 2 C j jz − 2j ≤ 3g;D3 = fz 2 C j jz + 5j ≤ 2g: We see that each disk contains one eigenvalue. - 
												
												Multicollinearity Diagnostics in Statistical Modeling and Remedies to Deal with It Using SAS
Multicollinearity Diagnostics in Statistical Modeling and Remedies to deal with it using SAS Harshada Joshi Session SP07 - PhUSE 2012 www.cytel.com 1 Agenda • What is Multicollinearity? • How to Detect Multicollinearity? Examination of Correlation Matrix Variance Inflation Factor Eigensystem Analysis of Correlation Matrix • Remedial Measures Ridge Regression Principal Component Regression www.cytel.com 2 What is Multicollinearity? • Multicollinearity is a statistical phenomenon in which there exists a perfect or exact relationship between the predictor variables. • When there is a perfect or exact relationship between the predictor variables, it is difficult to come up with reliable estimates of their individual coefficients. • It will result in incorrect conclusions about the relationship between outcome variable and predictor variables. www.cytel.com 3 What is Multicollinearity? Recall that the multiple linear regression is Y = Xβ + ϵ; Where, Y is an n x 1 vector of responses, X is an n x p matrix of the predictor variables, β is a p x 1 vector of unknown constants, ϵ is an n x 1 vector of random errors, 2 with ϵi ~ NID (0, σ ) www.cytel.com 4 What is Multicollinearity? • Multicollinearity inflates the variances of the parameter estimates and hence this may lead to lack of statistical significance of individual predictor variables even though the overall model may be significant. • The presence of multicollinearity can cause serious problems with the estimation of β and the interpretation. www.cytel.com 5 How to detect Multicollinearity? 1. Examination of Correlation Matrix 2. Variance Inflation Factor (VIF) 3. Eigensystem Analysis of Correlation Matrix www.cytel.com 6 How to detect Multicollinearity? 1. - 
												
												Best Subset Selection for Eliminating Multicollinearity
Journal of the Operations Research Society of Japan ⃝c The Operations Research Society of Japan Vol. 60, No. 3, July 2017, pp. 321{336 BEST SUBSET SELECTION FOR ELIMINATING MULTICOLLINEARITY Ryuta Tamura Ken Kobayashi Yuichi Takano Tokyo University of Fujitsu Laboratories Ltd. Senshu University Agriculture and Technology Ryuhei Miyashiro Kazuhide Nakata Tomomi Matsui Tokyo University of Tokyo Institute of Tokyo Institute of Agriculture and Technology Technology Technology (Received July 27, 2016; Revised December 2, 2016) Abstract This paper proposes a method for eliminating multicollinearity from linear regression models. Specifically, we select the best subset of explanatory variables subject to the upper bound on the condition number of the correlation matrix of selected variables. We first develop a cutting plane algorithm that, to approximate the condition number constraint, iteratively appends valid inequalities to the mixed integer quadratic optimization problem. We also devise a mixed integer semidefinite optimization formulation for best subset selection under the condition number constraint. Computational results demonstrate that our cutting plane algorithm frequently provides solutions of better quality than those obtained using local search algorithms for subset selection. Additionally, subset selection by means of our optimization formulation succeeds when the number of candidate explanatory variables is small. Keywords: Optimization, statistics, subset selection, multicollinearity, linear regression, mixed integer semidefinite optimization 1. Introduction Multicollinearity, which exists when two or more explanatory variables in a regression model are highly correlated, is a frequently encountered problem in multiple regression analysis [11, 14, 24]. Such an interrelationship among explanatory variables obscures their relationship with the explained variable, leading to computational instability in model es- timation. - 
												
												Inverse Littlewood-Offord Theorems and the Condition Number Of
Annals of Mathematics, 169 (2009), 595{632 Inverse Littlewood-Offord theorems and the condition number of random discrete matrices By Terence Tao and Van H. Vu* Abstract Consider a random sum η1v1 + ··· + ηnvn, where η1; : : : ; ηn are indepen- dently and identically distributed (i.i.d.) random signs and v1; : : : ; vn are inte- gers. The Littlewood-Offord problem asks to maximize concentration probabil- ities such as P(η1v1+···+ηnvn = 0) subject to various hypotheses on v1; : : : ; vn. In this paper we develop an inverse Littlewood-Offord theory (somewhat in the spirit of Freiman's inverse theory in additive combinatorics), which starts with the hypothesis that a concentration probability is large, and concludes that almost all of the v1; : : : ; vn are efficiently contained in a generalized arithmetic progression. As an application we give a new bound on the magnitude of the least singular value of a random Bernoulli matrix, which in turn provides upper tail estimates on the condition number. 1. Introduction Let v be a multiset (allowing repetitions) of n integers v1; : : : ; vn. Consider a class of discrete random walks Yµ,v on the integers Z, which start at the origin and consist of n steps, where at the ith step one moves backwards or forwards with magnitude vi and probability µ/2, and stays at rest with probability 1−µ. More precisely: Definition 1.1 (Random walks). For any 0 ≤ µ ≤ 1, let ηµ 2 {−1; 0; 1g denote a random variable which equals 0 with probability 1 − µ and ±1 with probability µ/2 each. In particular, η1 is a random sign ±1, while η0 is iden- tically zero.