A Study of Scale Effect on Specific Sediment Yield in the Loess Plateau
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Appendix A. Supplementary Material
Appendix A. Supplementary material Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes) David Cernˇ y´ 1,* & Rossy Natale2 1Department of the Geophysical Sciences, University of Chicago, Chicago 60637, USA 2Department of Organismal Biology & Anatomy, University of Chicago, Chicago 60637, USA *Corresponding Author. Email: [email protected] Contents 1 Fossil Calibrations 2 1.1 Calibrations used . .2 1.2 Rejected calibrations . 22 2 Outgroup sequences 30 2.1 Neornithine outgroups . 33 2.2 Non-neornithine outgroups . 39 3 Supplementary Methods 72 4 Supplementary Figures and Tables 74 5 Image Credits 91 References 99 1 1 Fossil Calibrations 1.1 Calibrations used Calibration 1 Node calibrated. MRCA of Uria aalge and Uria lomvia. Fossil taxon. Uria lomvia (Linnaeus, 1758). Specimen. CASG 71892 (referred specimen; Olson, 2013), California Academy of Sciences, San Francisco, CA, USA. Lower bound. 2.58 Ma. Phylogenetic justification. As in Smith (2015). Age justification. The status of CASG 71892 as the oldest known record of either of the two spp. of Uria was recently confirmed by the review of Watanabe et al. (2016). The younger of the two marine transgressions at the Tolstoi Point corresponds to the Bigbendian transgression (Olson, 2013), which contains the Gauss-Matuyama magnetostratigraphic boundary (Kaufman and Brigham-Grette, 1993). Attempts to date this reversal have been recently reviewed by Ohno et al. (2012); Singer (2014), and Head (2019). In particular, Deino et al. (2006) were able to tightly bracket the age of the reversal using high-precision 40Ar/39Ar dating of two tuffs in normally and reversely magnetized lacustrine sediments from Kenya, obtaining a value of 2.589 ± 0.003 Ma. -
Molecular Evidence of Keratin and Melanosomes in Feathers of the Early Cretaceous Bird Eoconfuciusornis
Molecular evidence of keratin and melanosomes in feathers of the Early Cretaceous bird Eoconfuciusornis Yanhong Pana,1, Wenxia Zhengb, Alison E. Moyerb,2, Jingmai K. O’Connorc, Min Wangc, Xiaoting Zhengd,e, Xiaoli Wangd, Elena R. Schroeterb, Zhonghe Zhouc,1, and Mary H. Schweitzerb,f,1 aKey Laboratory of Economic Stratigraphy and Palaeogeography of the Chinese Academy of Sciences, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences Nanjing 210008, China; bDepartment of Biological Science, North Carolina State University, Raleigh, NC 27695; cKey Laboratory of Vertebrate Evolution and Human Origins of the Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China; dInstitute of Geology and Paleontology, Linyi University, Linyi City, Shandong 276005, China; eShandong Tianyu Museum of Nature, Pingyi, Shandong 273300, China; and fNorth Carolina Museum of Natural Sciences, Raleigh, NC 27601 Contributed by Zhonghe Zhou, October 20, 2016 (sent for review August 10, 2016; reviewed by Dominique G. Homberger and Roger H. Sawyer) Microbodies associated with feathers of both nonavian dinosaurs reported microbodies were embedded. Whether keratinous and early birds were first identified as bacteria but have been proteins were preserved in these feathers, and the potential ex- reinterpreted as melanosomes. Whereas melanosomes in modern tent of this preservation, has not been explored. feathers are always surrounded by and embedded in keratin, Indeed, -
The Oldest Record of Ornithuromorpha from the Early Cretaceous of China
ARTICLE Received 6 Jan 2015 | Accepted 20 Mar 2015 | Published 5 May 2015 DOI: 10.1038/ncomms7987 OPEN The oldest record of ornithuromorpha from the early cretaceous of China Min Wang1, Xiaoting Zheng2,3, Jingmai K. O’Connor1, Graeme T. Lloyd4, Xiaoli Wang2,3, Yan Wang2,3, Xiaomei Zhang2,3 & Zhonghe Zhou1 Ornithuromorpha is the most inclusive clade containing extant birds but not the Mesozoic Enantiornithes. The early evolutionary history of this avian clade has been advanced with recent discoveries from Cretaceous deposits, indicating that Ornithuromorpha and Enantiornithes are the two major avian groups in Mesozoic. Here we report on a new ornithuromorph bird, Archaeornithura meemannae gen. et sp. nov., from the second oldest avian-bearing deposits (130.7 Ma) in the world. The new taxon is referable to the Hongshanornithidae and constitutes the oldest record of the Ornithuromorpha. However, A. meemannae shows few primitive features relative to younger hongshanornithids and is deeply nested within the Hongshanornithidae, suggesting that this clade is already well established. The new discovery extends the record of Ornithuromorpha by five to six million years, which in turn pushes back the divergence times of early avian lingeages into the Early Cretaceous. 1 Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China. 2 Institue of Geology and Paleontology, Linyi University, Linyi, Shandong 276000, China. 3 Tianyu Natural History Museum of Shandong, Pingyi, Shandong 273300, China. 4 Department of Biological Sciences, Faculty of Science, Macquarie University, Sydney, New South Wales 2019, Australia. -
Of All the Early Birds, Only One Lineage Survived by Susan Milius
DINO DOOMSDAY LuckyThe Ones Of all the early birds, only one lineage survived By Susan Milius he asteroid strike (or was it the roiling volcanoes?) avian (in the Avialae/Aves group) by about 165 million to that triggered dino doomsday 66 million years ago 150 million years ago. That left plenty of time for bona fide also brought an avian apocalypse. Birds had evolved birds to diversify before the great die-off. T by then, but only some had what it took to survive. The bird pioneers included the once widespread and abun- Biologists now generally accept birds as a kind of dinosaur, dant Enantiornithes, or “opposite birds.” Compared with just as people are a kind of mammal. Much of what we think modern birds, their ball-and-socket shoulder joints were of as birdlike traits — bipedal stance, feathers, wishbones and “backwards,” with ball rather than socket on the scapula. so on — are actually dinosaur traits that popped up here and These ancient alt birds may have gone down in the big there in the vast doomed branches of the dino family tree. In extinction that left only fish, amphibians, mammals and a the diagram at right, based on one from paleontologist few reptile lineages (including birds) among vertebrates. Stephen Brusatte of the University of Edinburgh and col- There’s not a lot of information to go on. “The fossil record leagues, anatomical icons give a rough idea of when some of of birds is pretty bad,” Brusatte says. “But I think those lin- these innovations emerged. eages that go up to the red horizontal line of doom in my fig- One branch of the dinosaur tree gradually turned arguably ure are ones that died in the impact chaos.” s 1 2 Microraptor dinosaurs were relatives of the velociraptors that (in ridiculously oversized form) put the screaming gotchas into Jurassic Park. -
Keynote Presentations Abstracts
6th International Congress on Fossil Insects, Arthropods and Amber Byblos, April 2013 ----------------------------------------------------------------------------------------------------------------------------------- Keynote presentations abstracts - 1 - 6th International Congress on Fossil Insects, Arthropods and Amber Byblos, April 2013 ----------------------------------------------------------------------------------------------------------------------------------- Sic transit gloria mundi: When bad things happen to good bugs Michael S. Engel University of Kansas Natural History Museum & American Museum of Natural History Origination and extinction, the ‘Alpha and Omega’ of Evolution, are the principal factors shaping biological diversity through time and yet the latter is often ignored in phylogenetic studies of insects. Extinct lineages play a dramatic role in revising our concepts of genealogical relationships and the evolution of major biological phenomena. These forgotten extinct clades or grades often rewrite our understanding of biogeographic patterns, timing of episodes of diversification, correlated biological/geological events, and other macroevolutionary trends. Examples are provided throughout the long history of insects of the importance of studying insect fossils, particularly those preserved with such high fidelity in amber, for resolving long- standing questions in entomology. In each example, the need for further integration of paleontological evidence into modern phylogenetic research on insects is emphasized. - 2 -
The Morphology and Systematics of the Clam Shrimp Platyestheria Gen
Cretaceous Research 91 (2018) 274e286 Contents lists available at ScienceDirect Cretaceous Research journal homepage: www.elsevier.com/locate/CretRes The morphology and systematics of the clam shrimp Platyestheria gen. nov. abaetensis (Cardoso) (Crustacea, Spinicaudata) from the Lower Cretaceous of the Sanfranciscana Basin, southeast Brazil * Jonathas S. Bittencourt a, , Rosemarie Rohn b, Oscar F. Gallego c, Mateo D. Monferran c, Alexandre Uhlein a a Laboratorio de Paleontologia e Macroevoluçao,~ Centro de Pesquisas Professor Manoel Teixeira da Costa, Departamento de Geologia, Instituto de Geoci^encias, Universidade Federal de Minas Gerais, Av. Presidente Antonio^ Carlos 6627, Pampulha, 31270-901, Belo Horizonte, MG, Brazil b Sao~ Paulo State University (UNESP), Institute of Geosciences and Exact Sciences, Department of Applied Geology, Rio Claro Campus, Av. 24A, 1515, 13506- 900, Rio Claro, SP, Brazil c Centro de Ecología Aplicada del Litoral, CONICET-UNNE and Geología Historica-Micropaleontología (Area Ciencias de la Tierra - Departamento de Biología), FaCENA-UNNE, Casilla de Correo 128, 3400 Corrientes, Argentina article info abstract Article history: New specimens of the clam shrimp ‘Pseudestheria’ abaetensis Cardoso, 1971 (Spinicaudata) are described. Received 6 February 2018 The material was collected from the Quirico Formation (Lower Cretaceous of the Sanfranciscana Basin), at Received in revised form the same locality as the type series of the species. The carapaces are very large, oval and elongated, with 4 May 2018 anteriorly located and slightly projected umbo, straight dorsal margin, with flattened growth bands and Accepted in revised form 22 June 2018 15e20 serrated growth lines. Details of the microscopic structure of the carapace were analysed under Available online 26 June 2018 scanning electron microscope for the first time, disclosing a unique reticular pattern of ornamentation. -
Dominated Locality of the Jehol Biota
Chin. Sci. Bull. csb.scichina.com DOI 10.1007/s11434-014-0669-8 www.springer.com/scp Article Geology A new species from an ornithuromorph (Aves: Ornithothoraces) dominated locality of the Jehol Biota Shuang Zhou • Jingmai K. O’Connor • Min Wang Received: 10 July 2014 / Accepted: 16 September 2014 Ó Science China Press and Springer-Verlag Berlin Heidelberg 2014 Abstract We report on a new species of ornithuromorph 1 Introduction bird, Iteravis huchzermeyeri gen. et sp. nov., from the previously unreported Sihedang locality of the Lower The Early Cretaceous Jehol Biota in Northeastern China Cretaceous Yixian Formation, the oldest ornithuromorph comprises the most important avifauna in the world, con- bearing deposit in the world. Unlike most other Cretaceous taining the earliest members of every clade of Cretaceous localities, specimens from this new quarry are largely bird including the oldest member of Ornithuromorpha, the referable to Ornithuromorpha, similar to the Lower Cre- derived clade of birds that includes living birds (Neornithes) taceous Aptian Xiagou Formation in Gansu Province. Also [1]. Traditionally, Cretaceous avifaunas are dominated by similar to the Xiagou avifauna, the fauna at Sihedang is Enantiornithes, the sister taxon to Ornithuromorpha and largely dominated by a single taxon (described here). often considered the first major avian radiation [2]. However, Differences in faunal dominance may suggest the Sihedang this successful clade succumbed with other non-neornithine records a unique ecological habitat. This may also explain dinosaurs at the end of the Cretaceous; the underlying causes the dominance of Gansus in the younger Xiagou Formation of their extinction and whether their demise was sudden or locality and suggests that previous hypotheses regarding gradual are unclear. -
218 Stratigraphy of the Lower Cretaceous Dabeigou Formation from Luanping Basin, North China: Implications from Non-Marine Ostra
Berichte der Geologischen Bundesanstalt (ISSN 107-8880), Band 120, Wien 2017 10th Int. Symp. Cretaceous – ABSTRACTS Stratigraphy of the Lower Cretaceous Dabeigou Formation from Luanping Basin, North China: implications from non-marine ostracod biostratigraphy Qin, Z.1,*, Xi, Dangpeng1, Sames, B.2, Xu, Yankang1, Ding, C.1, Wan, X.1 1) China University of Geosciences (Beijing), Beijing, China, *E.mail: [email protected] 2) Department of Geodynamics und Sedimentolog, University of Vienna, Vienna, Austria The Dabeigou Formation of the Luanping Basin in northern Hebei is well known for its continuous non-marine Lower Cretaceous deposits and the preservation of the earliest Jehol Biota, including abundant ostracod fossils (YANG, 1984; PANG et al., 2002). However, it has been suggested that the species diversity of non-marine Early Cretaceous ostracods, particularly among the Superfamily Cypridoidea, has been greatly exaggerated in general (SAMES & HORNE, 2012), which also applies to those in northern Hebei as well as in the adjacent western Liaoning region (YANG, 1984; WANG et al., 2015). In addition, the biostratigraphic age given for the Dabeigou Formation (?Upper Jurassic, Valanginian– Hauterivian) based on the ostracod fauna is in conflict with the published isotope and magnetostratigraphic ages. Detailed lithostratigraphic analysis of the newly exposed Yushuxia section of the Luanping Basin suggests that the Dabeigou Formation can be subdivided into three members and 46 layers. The First Member mainly consists of tuffaceous and coarse clasolites of fan delta front, while the Second and Third Member are mainly composed of grey to dark grey fine clasolite of semi-deep lake facies. Ostracod analysis on samples from the Dabeigou Formation revealed 15 species of nine genera. -
Herbivorous Ecomorphology and Specialization Patterns in Theropod Dinosaur Evolution
Herbivorous ecomorphology and specialization patterns in theropod dinosaur evolution Lindsay E. Zanno1 and Peter J. Makovicky Department of Geology, The Field Museum, Chicago, IL 60605 Edited by Randall Irmis, Department of Geology and Geophysics, University of Utah, Salt Lake City, UT, and accepted by the Editorial Board November 10, 2010 (received for review August 16, 2010) Interpreting key ecological parameters, such as diet, of extinct characteristics have been used to propose a myriad of dietary organisms without the benefit of direct observation or explicit preferences with little consensus (8, 11, 15–20). fossil evidence poses a formidable challenge for paleobiological Recently, a burst of theropod dinosaur discoveries bearing an studies. To date, dietary categorizations of extinct taxa are largely unexpected degree of ecomorphological disparity (particularly generated by means of modern analogs; however, for many with respect to dental anatomy) (12, 20–24) has sparked species the method is subject to considerable ambiguity. Here a renewed interest in the diet of coelurosaurian species. Yet, to we present a refined approach for assessing trophic habits in fossil date, a large scale quantitative analysis on theropod ecomor- taxa and apply the method to coelurosaurian dinosaurs—a clade phology has not been conducted. Serendipitously, an increasing for which diet is particularly controversial. Our findings detect 21 number of theropod specimens preserve unequivocal evidence of morphological features that exhibit statistically significant corre- diet in the form of fossilized gut contents (25–27), coprolites lations with extrinsic fossil evidence of coelurosaurian herbivory, (28), or a gastric mill (21–23, 29–31), which are known to cor- such as stomach contents and a gastric mill. -
A Subadult Specimen of Pengornis and Character Evolution in Enantiornithes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/271079655 A subadult specimen of Pengornis and character evolution in Enantiornithes Article · January 2014 CITATIONS READS 10 26 4 authors, including: Jingmai Kathleen O'Connor Vertebrata Palasiatica Chinese Academy of Sciences Chinese Academy of Sciences 87 PUBLICATIONS 856 CITATIONS 213 PUBLICATIONS 466 CITATIONS SEE PROFILE SEE PROFILE All in-text references underlined in blue are linked to publications on ResearchGate, Available from: Vertebrata Palasiatica letting you access and read them immediately. Retrieved on: 12 August 2016 -97 第52卷 第1期 古 脊 椎 动 物 学 报 pp. 77 2014年1月 VERTEBRATA PALASIATICA figs. 1-9 A subadult specimen of Pengornis and character evolution in Enantiornithes HU Han1,2 ZHOU Zhong-He1 Jingmai K. O’CONNOR1 (1 Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences Beijing 100044 [email protected]) (2 University of Chinese Academy of Sciences Beijing 100049) Abstract Previously known only from the holotype specimen, Pengornis houi is the largest known Early Cretaceous enantiornithine bird and important for understanding body size and character evolution in Ornithothoraces. We report on a new subadult specimen from the Lower Cretaceous Jiufotang Formation referred to Pengornis sp. The specimen preserves a nearly complete sternum, reminiscent of that in Protopteryx and the basal ornithuromorph Archaeorhynchus, confirming the basal position of Pengornis and shedding new light on the evolution of the sternum in ornithothoracines. Anatomical information suggests that despite its size, Pengornis was arboreal, like other enantiornithines. -
The Completeness of the Fossil Record of Mesozoic Birds: Implications for Early Avian Evolution
The Completeness of the Fossil Record of Mesozoic Birds: Implications for Early Avian Evolution Neil Brocklehurst1*, Paul Upchurch2, Philip D. Mannion1,3, Jingmai O’Connor4,5 1 Museum fu¨r Naturkunde, Leibniz-Institut fu¨r Evolutions und Biodiversita¨tsforschung, Berlin, Germany, 2 Department of Earth Sciences, UCL, London, United Kingdom, 3 Department of Earth Science and Engineering, Imperial College London, London, United Kingdom, 4 Institute of Vertebrate Paleontology and Paleoanthropology, Beijing, China, 5 Dinosaur Institute, Natural History Museum of LA County, Los Angeles, California, United States of America Abstract Many palaeobiological analyses have concluded that modern birds (Neornithes) radiated no earlier than the Maastrichtian, whereas molecular clock studies have argued for a much earlier origination. Here, we assess the quality of the fossil record of Mesozoic avian species, using a recently proposed character completeness metric which calculates the percentage of phylogenetic characters that can be scored for each taxon. Estimates of fossil record quality are plotted against geological time and compared to estimates of species level diversity, sea level, and depositional environment. Geographical controls on the avian fossil record are investigated by comparing the completeness scores of species in different continental regions and latitudinal bins. Avian fossil record quality varies greatly with peaks during the Tithonian-early Berriasian, Aptian, and Coniacian–Santonian, and troughs during the Albian-Turonian and the Maastrichtian. The completeness metric correlates more strongly with a ‘sampling corrected’ residual diversity curve of avian species than with the raw taxic diversity curve, suggesting that the abundance and diversity of birds might influence the probability of high quality specimens being preserved. -
Supplemental Figs S1-S6
Bayesian tip dating reveals heterogeneous morphological clocks in Mesozoic birds Chi Zhang1,2,* and Min Wang1,2 1Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China 2Center for Excellence in Life and Paleoenvironment, Chinese Academy of Sciences, Beijing 100044, China ∗Corresponding author: E-mail: [email protected] Supplementary Information Figures Dromaeosauridae Archaeopteryx Jeholornis Chongmingia Sapeornis Confuciusornis_sanctus Changchengornis Confuciusornis_dui Yangavis Eoconfuciusornis Pengornis Eopengornis Protopteryx 15.5 Boluochia Longipteryx Longirostravis Rapaxavis Shanweiniao Concornis Elsornis Gobipteryx Neuquenornis Eoalulavis Cathayornis Eocathayornis Eoenantiornis Linyiornis mean relative rate Fortunguavis Sulcavis Bohaiornis 0.3 Parabohaiornis Longusunguis Zhouornis Shenqiornis Vescornis Dunhuangia 1.0 Piscivorenantiornis Pterygornis Qiliania Cruralispennia Monoenantiornis Archaeorhynchus Jianchangornis Schizooura Bellulornis Vorona Patagopteryx Songlingornis Iteravis Yanornis clade probability Yixianornis Piscivoravis Longicrusavis 0.5 Hongshanornis Parahongshanornis Archaeornithura Tianyuornis Apsaravis Gansus Ichthyornis Vegavis Anas Hesperornis Gallus Parahesperornis Baptornis_varneri Baptornis_advenus Enaliornis -175 -150 -125 -100 - 7 5 - 5 0 - 2 5 0 Figure S1. Dated phylogeny (time tree) of the Mesozoic birds under the partitioned analysis. The color of the branch represents the mean relative