Mac OS X Basics
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Interactive Visualization Tools for the Structural Biologist
computer programs Journal of Applied Interactive visualization tools for the structural Crystallography biologist ISSN 0021-8898 Benjamin T. Porebski,a Bosco K. Hob* and Ashley M. Bucklea* Received 22 March 2013 Accepted 28 June 2013 aDepartment of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria 3800, Australia, and bMonash eResearch Center, Monash University, Clayton, Victoria 3800, Australia. Correspondence e-mail: [email protected], [email protected] In structural biology, management of a large number of Protein Data Bank (PDB) files and raw X-ray diffraction images often presents a major organizational problem. Existing software packages that manipulate these file types were not designed for these kinds of file-management tasks. This is typically encountered when browsing through a folder of hundreds of X-ray images, with the aim of rapidly inspecting the diffraction quality of a data set. To solve this problem, a useful functionality of the Macintosh operating system (OSX) has been exploited that allows custom visualization plugins to be attached to certain file types. Software plugins have been developed for diffraction images and PDB files, which in many scenarios can save considerable time and effort. The direct visualization of diffraction images and PDB structures in the file browser can be used to identify key files of interest simply by scrolling through a list of files. 1. Introduction Chimera (Pettersen et al., 2004), QtMG (McNicholas et al., 2011), Data visualization is an important and daily activity in structural VMD (Humphrey et al., 1996)], they were primarily designed to biology, and often requires several specialized applications. The analyse files individually. -
Macbook Were Made for Each Other
Congratulations, you and your MacBook were made for each other. Say hello to your MacBook. www.apple.com/macbook Built-in iSight camera and iChat Video chat with friends and family anywhere in the world. Mac Help isight Finder Browse your files like you browse your music with Cover Flow. Mac Help finder MacBook Mail iCal and Address Book Manage all your email Keep your schedule and accounts in one place. your contacts in sync. Mac Help Mac Help mail isync Mac OS X Leopard www.apple.com/macosx Time Machine Quick Look Spotlight Safari Automatically Instantly preview Find anything Experience the web back up and your files. on your Mac. with the fastest restore your files. Mac Help Mac Help browser in the world. Mac Help quick look spotlight Mac Help time machine safari iLife ’09 www.apple.com/ilife iPhoto iMovie GarageBand iWeb Organize and Make a great- Learn to play. Create custom search your looking movie in Start a jam session. websites and publish photos by faces, minutes or edit Record and mix them anywhere with places, or events. your masterpiece. your own song. a click. iPhoto Help iMovie Help GarageBand Help iWeb Help photos movie record website Contents Chapter 1: Ready, Set Up, Go 9 What’s in the Box 9 Setting Up Your MacBook 16 Putting Your MacBook to Sleep or Shutting It Down Chapter 2: Life with Your MacBook 20 Basic Features of Your MacBook 22 Keyboard Features of Your MacBook 24 Ports on Your MacBook 26 Using the Trackpad and Keyboard 27 Using the MacBook Battery 29 Getting Answers Chapter 3: Boost Your Memory 35 Installing Additional -
Mac OS X Server in Education Collaboration and Communication Solutions for 21St-Century Academic Environments
Mac OS X Server in Education Collaboration and communication solutions for 21st-century academic environments. Podcasts. Blogs. Wikis. Group calendars. Video chats. Instant access to centralized resources. Welcome to the 21st-century academic environment. With Mac OS X Server version 10.5 Leopard, Apple puts the power of a server into the hands of everyone in your institution. So students, educators, and researchers are always connected and always communicating and collaborating—whether they’re around the globe or just across campus. 10 Reasons for Mac OS X Server in Education 1. End-to-end production of professional-quality podcasts. Podcast Producer in Mac OS X Server is a complete, customizable solution for producing podcasts of lectures, development sessions, research presentations, and campus updates. Starting with the Podcast Capture application in Mac OS X Leopard, it’s a snap for users to capture audio and video, record onscreen actions, or submit existing QuickTime content to the server. Once the content is uploaded, Podcast Producer automatically publishes it to your choice of distribution services—including iTunes U—in formats optimized for playback on almost any device, from HD video to iPod, Apple TV, or any multimedia-enabled cell phone. 2. Group collaboration on wiki-powered websites. Mac OS X Server gives students, educators, and research teams an instant space for collaboration. With their own group wiki—complete with blog, group calendar, and mailing-list archive—authorized users can create entries, tag and cross-reference material, upload files and images, add comments, and perform keyword searches. Best of all, these powerful capabilities are accessible from any modern browser in just a few clicks—there’s no need to learn an arcane markup language. -
OS X Mountain Lion Includes Ebook & Learn Os X Mountain Lion— Video Access the Quick and Easy Way!
Final spine = 1.2656” VISUAL QUICKSTA RT GUIDEIn full color VISUAL QUICKSTART GUIDE VISUAL QUICKSTART GUIDE OS X Mountain Lion X Mountain OS INCLUDES eBOOK & Learn OS X Mountain Lion— VIDEO ACCESS the quick and easy way! • Three ways to learn! Now you can curl up with the book, learn on the mobile device of your choice, or watch an expert guide you through the core features of Mountain Lion. This book includes an eBook version and the OS X Mountain Lion: Video QuickStart for the same price! OS X Mountain Lion • Concise steps and explanations let you get up and running in no time. • Essential reference guide keeps you coming back again and again. • Whether you’re new to OS X or you’ve been using it for years, this book has something for you—from Mountain Lion’s great new productivity tools such as Reminders and Notes and Notification Center to full iCloud integration—and much, much more! VISUAL • Visit the companion website at www.mariasguides.com for additional resources. QUICK Maria Langer is a freelance writer who has been writing about Mac OS since 1990. She is the author of more than 75 books and hundreds of articles about using computers. When Maria is not writing, she’s offering S T tours, day trips, and multiday excursions by helicopter for Flying M Air, A LLC. Her blog, An Eclectic Mind, can be found at www.marialanger.com. RT GUIDE Peachpit Press COVERS: OS X 10.8 US $29.99 CAN $30.99 UK £21.99 www.peachpit.com CATEGORY: Operating Systems / OS X ISBN-13: 978-0-321-85788-0 ISBN-10: 0-321-85788-7 BOOK LEVEL: Beginning / Intermediate LAN MARIA LANGER 52999 AUTHOR PHOTO: Jeff Kida G COVER IMAGE: © Geoffrey Kuchera / shutterstock.com ER 9 780321 857880 THREE WAYS To learn—prINT, eBOOK & VIDEO! VISUAL QUICKSTART GUIDE OS X Mountain Lion MARIA LANGER Peachpit Press Visual QuickStart Guide OS X Mountain Lion Maria Langer Peachpit Press www.peachpit.com To report errors, please send a note to [email protected]. -
Apple for Newbies
Apple for Newbies While Macs are technically personal computers (PCs), the term PC is often used to describe computers that run Windows or Linux. Therefore, Macs are often referred to as personal computers, but not PCs. Unlike PCs, which are manufactured by several different companies, Apple designs and manufactures all Macintosh computers. Dock Select an item in the Dock: click its icon. When an application is running, the Dock displays an illuminated dash beneath the application's icon. To make any currently running application the active one, click its icon in the Dock to switch to it (the active application's name appears in the menu bar to the right of the Apple logo). As you open applications, their respective icons appear in the Dock, even if they weren't there originally. That means if you've got a lot of applications open, your Dock will grow substantially. If you minimize a window, the window gets pulled down into the Dock and waits until you click this icon to bring up the window again. The Dock keeps applications on its left side, while Stacks and minimized windows are kept on its right. If you look closely, you'll see a vertical separator line that separates them. If you want to rearrange where the icons appear within their line limits, just drag a docked icon to another location on the Dock and drop it. Tip: Control-click or right-click a Dock item to see a contextual menu of additional choices. Adding and removing Dock items 1. Add an item to the Dock: Click the Launchpad icon in the Dock and drag the application icon to the Dock; the icons in the Dock will move aside to make room for the new one. -
How to Start a Podcast and Make It Work
LAUNCHPAD LEARNING art ONLINE export HOW TO START A PODCAST AND MAKE IT WORK presented by Marco Timpano Resident Expert What We’ll Marco Timpano Learn 04 /The Big Idea 06 / Q+A with Marco Timpano 08 / Foundations for a Podcast 10 / MONETIZATION: Creating value from your podcast 13 / Let’s Define CPM? Marco Timpano is the author of 25 Things I Wish I Knew Before I Started My Podcast. He is an award-winning podcaster, voice-over artist, and performer. His podcasts include: The Insomnia Project, Eat & Drink, Every Place is the Same, and Born on This Day Podcast. How to Start a Podcast and Make it Work 3 Podcasting is a very If you make PERSONAL MEDIUM that offers rare levels of content that CREATIVE CONTROL and rewards niche interests and POINTS OF VIEW. resonates The low barriers to entry mean that there is both tremendous opportunity and saturation of content. Doing your research, investing in production quality, with people, and being thoughtful about where your podcast fits into the landscape can position you to rise through the field. Once you get through the initial technical barriers, you will be ready to take on the much greater challenge of they will building an audience and monetizing your podcast. listen. Q+A with Marco Timpano What is your view on the There is an increasing Choosing the hosting Can you share some What are some different thoughtfulness you need amount of podcast platform that works for common mistakes and strategies to build an I find the best to have when building a networks and media you is another big part of traps to avoid? audience? quality podcast? companies in the the process. -
Can't Delete a Partially Downloaded App on Macbook Air Question: Q: How to Remove Partially Downloaded Files in 10.6
can't delete a partially downloaded app on macbook air Question: Q: How to remove partially downloaded files in 10.6. I could not find any recent helpful answers via Google, but eventually discovered, by trial and error, that you need to delete the failed downloads in three places namely: /Library/Updates (this is probably unnecessary) and the *two* files here:- /private/var/folders/<complicated long path>/<name> where <name> ends in .pkg and also in .pkg.resumeData (i.e. the "same name" twice) I found out where these were being saved by (*immediately* after the update-failure), typing. find /private/var/folders -newerct "1 minute ago" -name "*.resumeData" and sure enough, these corresponded to the failed downloads. I removed them with. sudo rm /private/var/folders/<complicated long path discovered via find/<name>.pgk. sudo rm /private/var/folders/<complicated long path discovered via find/<name>.pgk.resumeData. and then the software update started working again instead of always aborting with e.g. "iTunes: partially downloaded" etc. The reason for the original failure is my poor internet service that constantly breaks halfway through any long-ish downloads. An example of the actual filepath on my 10.6.8 Mac OSX is: /private/var/folders/02/027LjtRMGXSZNggzpqLQg++++TI/-Caches-/com.apple.SoftwareU pdate/swcdn.apple.com/content/downloads/<same amount again in length> in other words, really long winded and very difficult to find (I have been trying to do this all day and could not find anything via the www) - I hope it helps you! Question: Q: deleting a partially downloaded app. -
Tinkertool System 6 Reference Manual Ii
Documentation 0632-1969/2 TinkerTool System 6 Reference Manual ii Version 6.99, July 21, 2021. US-English edition. MBS Documentation 0632-1969/2 © Copyright 2003 – 2021 by Marcel Bresink Software-Systeme Marcel Bresink Software-Systeme Ringstr. 21 56630 Kretz Germany All rights reserved. No part of this publication may be redistributed, translated in other languages, or transmitted, in any form or by any means, electronic, mechanical, recording, or otherwise, without the prior written permission of the publisher. This publication may contain examples of data used in daily business operations. To illustrate them as completely as possible, the examples include the names of individuals, companies, brands, and products. All of these names are fictitious and any similarity to the names and addresses used by an actual business enterprise is entirely coincidental. This publication could include technical inaccuracies or typographical errors. Changes are periodically made to the information herein; these changes will be incorporated in new editions of the publication. The publisher may make improvements and/or changes in the product(s) and/or the program(s) described in this publication at any time without notice. Make sure that you are using the correct edition of the publication for the level of the product. The version number can be found at the top of this page. Apple, macOS, iCloud, and FireWire are registered trademarks of Apple Inc. Intel is a registered trademark of Intel Corporation. UNIX is a registered trademark of The Open Group. Broadcom is a registered trademark of Broadcom, Inc. Trademarks or service marks are used for identification purposes only. -
Tips to Keep Connected Using Facetime, Zoom and Skype Contents
Tips to keep connected Using FaceTime, Zoom and Skype Contents FaceTime on iPad or iPhone ................................................................ 2 FaceTime on macOS ........................................................................... 3 FaceTime on Andorid or Windows ....................................................... 3 Zoom on macOS, iPad or iPhone ........................................................ 4 Zoom on Android ............................................................................... 5 Zoom on Windows ............................................................................. 6 Skype on Windows ............................................................................. 7 Skype on macOS ................................................................................ 8 Skype on Android ............................................................................... 9 Skype on iPad and iPhone ................................................................ 10 2 FaceTime on iPad or iPhone In the FaceTime app , you can make video or audio calls to friends and family, whether they are using an iPhone, iPad, iPod touch, or a Mac. With the front camera, you can talk face-to-face; switch to the rear camera to share what you see around you. 1. Go to Settings > FaceTime, then turn on FaceTime. 2. If you want to be able to take Live Photos during FaceTime calls, turn on FaceTime Live Photos. 3. Enter your phone number, Apple ID, or email address to use with FaceTime. To make a FaceTime call 1. In the FaceTime app , click the + in the top right hand of your screen. 2. Type in the person’s name (from your address book on your phone/ iPad) 3. Click ‘audio’ or ‘video’ to start the call. Apple, iPad, iPhone, macOS, FaceTime: Copyright © 2020 Apple Inc. All rights reserved. 3 FaceTime on macOS In the FaceTime app , you can make video or audio calls to friends and family, whether they are using an iPhone, iPad, iPod touch, or a Mac. With the front camera, you can talk face-to-face; switch to the rear camera to share what you see around you. -
Mac Basics: the Finder Organizes All of Your Files
Mac Basics: The Finder organizes all of your files The Finder in OS X provides access to your files, folders, and drives, and helps you to keep them organized. What is the Finder? The Finder is the app that helps you navigate all of the files and folders on your Mac. The Finder lets you browse your apps, disks, files, and folders in a variety of ways. You can use the Finder to organize these items the way you want. You can also use the Finder to search for items, delete files you no longer want, and more. Finder windows To open a new Finder window, click the Finder icon in the Dock, then select File > New Window. All My Files The first window you may see in the Finder is "All My Files". This is a special window that shows you all of the documents you have access to on your Mac. Changing Views You can change how items are displayed in Finder windows by dragging them, arranging them, or changing their view. Use the View menu to change the view of the current Finder window. You can also click the corresponding View button in the Toolbar that appears at the top of Finder windows. IconIcon ViewView Choose View > as Icons to see a small image that represents each file. You can move each item by dragging the icon that represents the file. List View Choose View > as List to see the items in a consecutive order. You can change the sort order of the list by clicking the headers (Name, Documents, Kind, Date) at the top of the list view. -
Macbook Air User's Guide (Manual)
Congratulations, you and your MacBook Air were made for each other. Built-in iSight camera Video chat with up to three friends anywhere in the world at the same time. www.apple.com/macbookair Mac Help isight Finder Time Machine Browse the contents Automatically back of your computer up your files to an using Cover Flow. extra hard drive. www.apple.com/macosx www.apple.com/macosx Mac Help finder Mac Help time machine iMovie iPhoto Collect all your video in Organize all your photos one library. Create and with Events. Publish to a share movies in minutes. Web Gallery with a click. www.apple.com/ilife/imovie www.apple.com/ilife/iphoto iMovie Help movie iPhoto Help photo GarageBand iWeb Create music by adding Create beautiful websites musicians to a virtual stage. with photos, movies, blogs, Enhance your song to sound podcasts, and dynamic like a pro. web widgets. www.apple.com/ilife/garageband www.apple.com/ilife/iweb GarageBand Help record iWeb Help website Contents Chapter 1: Ready, Set Up, Go 8 Welcome 9 What’s in the Box 10 Setting Up Your MacBook Air 15 Setting Up DVD or CD Sharing 16 Migrating Information to Your MacBook Air 19 Getting Additional Information onto Your MacBook Air 22 Putting Your MacBook Air to Sleep or Shutting It Down Chapter 2: Life with Your MacBook Air 26 Basic Features of Your MacBook Air 28 Keyboard Features of Your MacBook Air 30 Ports on Your MacBook Air 32 Using the Trackpad and Keyboard 34 Running Your MacBook Air on Battery Power 35 Getting Answers Chapter 3: Problem, Meet Solution 40 Problems That Prevent -
Macbook Tips & Tricks
MacBook Tips & Tricks Let’s take a tour USB 3 Headphones MegSafe 2 Dual Microphones MagSafe 2 power port: Charge your notebook. If you accidentally trip over the power cord, it cleanly breaks away. ••USB 3 and Thunderbolt 2 ports: Transfer data at lightning-fast speeds and connect displays like the Apple Thunderbolt Display. ••Headphone port: Connect speakers or headphones. ••Dual microphones: Talk with friends or record audio ThunderBolt 2 USB 3 SDXC card slot (13-inch model only) • SDXC card slot: Transfer photos and videos from your digital camera. SDXC card slot available on 13- inch model only. Note: You can use the cable that came with your camera or a USB card reader to transfer photos and videos to your 11-inch MacBook Air. MacBook Tips & Tricks 1 03-08-16 KB Desktop The desktop is the first thing you see when you turn on your laptop. It has the Apple menu at the top and the Dock at the bottom. Dock MacBook Tips & Tricks 2 03-08-16 KB Launchpad Launchpad makes your desktop look and act like an iPad. All your apps will be available from here. Finder Finder is your file management system. Use it to organize your files or access network drives like your H: drive. System Preferences Two places where you can access system preferences MacBook Tips & Tricks 3 03-08-16 KB Trackpad and Gestures The trackpad replaces the external mouse and utilizes gestures to perform actions on the computer. You can make customize to your style. Keyboard Shortcut link https://support.apple.com/en-us/HT201236 Keyboard shortcuts o Shift + Control + Power