Table S1: Replicon dataset

Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Acaryochloris marina MBIC11017 chromosome [] (CP000828) circular 6,503,724 47.3 5,770 5,599 6 67 5 93 Acaryochloris marina MBIC11017 plasmid pREB1 [CYANOBACTERIA] (CP000838) circular 374,161 47.3 313 292 - - - 21 genome Acaryochloris marina MBIC11017 plasmid pREB2 [CYANOBACTERIA] (CP000839) circular 356,087 45.3 331 312 - - - 19 genome Acaryochloris marina MBIC11017 plasmid pREB3 [CYANOBACTERIA] (CP000840) circular 273,121 45.2 275 245 - - - 30 genome Acaryochloris marina MBIC11017 plasmid pREB4 [CYANOBACTERIA] (CP000841) circular 226,680 45.9 219 205 - - - 14 genome Acaryochloris marina MBIC11017 plasmid pREB5 [CYANOBACTERIA] (CP000842) circular 177,162 44.7 171 168 - - - 3 genome Acaryochloris marina MBIC11017 plasmid pREB6 [CYANOBACTERIA] (CP000843) circular 172,728 47.1 157 141 - - - 16 genome Acaryochloris marina MBIC11017 plasmid pREB7 [CYANOBACTERIA] (CP000844) circular 155,110 45.6 129 124 - - - 5 genome Acaryochloris marina MBIC11017 plasmid pREB8 [CYANOBACTERIA] (CP000845) circular 120,693 45.4 102 100 - - - 2 genome Acetobacter aceti plasmid pAC5 [] (AF110140) circular 5,123 55.9 2 2 - - - - plasmid Acetobacter pasteurianus IFO 3283-01 chromosome [PROTEOBACTERIA] (AP011121) circular 2,907,495 53.0 2,725 2,621 15 57 1 30 genome Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011 [PROTEOBACTERIA] (AP011122) circular 191,799 53.4 183 170 - - - 13 genome Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-020 [PROTEOBACTERIA] (AP011123) circular 182,940 53.5 173 162 - - - 11 genome Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-030 [PROTEOBACTERIA] (AP011124) circular 49,961 53.9 59 58 - - - 1 genome Acetobacter pasteurianus IFO 3283-01-42C chromosome [PROTEOBACTERIA] (AP011163) circular 2,815,241 53.1 2,647 2,555 12 54 1 25 genome Acetobacter pasteurianus IFO 3283-01-42C plasmid pAP42C-011 [PROTEOBACTERIA] (AP011164) circular 191,799 53.4 183 171 - - - 12 genome Acetobacter pasteurianus IFO 3283-01-42C plasmid pAP42C-020 [PROTEOBACTERIA] (AP011165) circular 182,940 53.5 173 163 - - - 10 genome Acetobacter pasteurianus IFO 3283-01-42C plasmid pAP42C-030 [PROTEOBACTERIA] (AP011166) circular 49,961 53.9 59 58 - - - 1 genome Acetobacter pasteurianus IFO 3283-03 chromosome [PROTEOBACTERIA] (AP011128) circular 2,907,287 53.0 2,719 2,615 15 57 1 30 genome Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010 [PROTEOBACTERIA] (AP011129) circular 191,427 53.4 182 171 - - - 11 genome Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-020 [PROTEOBACTERIA] (AP011130) circular 182,940 53.5 173 162 - - - 11 genome Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-030 [PROTEOBACTERIA] (AP011131) circular 49,961 53.9 59 58 - - - 1 genome Acetobacter pasteurianus IFO 3283-07 chromosome [PROTEOBACTERIA] (AP011135) circular 2,906,044 53.0 2,721 2,618 15 57 1 29 genome Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-010 [PROTEOBACTERIA] (AP011136) circular 191,427 53.4 182 171 - - - 11 genome Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-020 [PROTEOBACTERIA] (AP011137) circular 182,940 53.5 173 162 - - - 11 genome Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-030 [PROTEOBACTERIA] (AP011138) circular 49,961 53.9 59 58 - - - 1 genome Acetobacter pasteurianus IFO 3283-12 chromosome [PROTEOBACTERIA] (AP011170) circular 2,904,624 53.0 2,720 2,617 15 57 1 30 genome Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014 [PROTEOBACTERIA] (AP011171) circular 191,411 53.4 181 170 - - - 11 genome Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-020 [PROTEOBACTERIA] (AP011172) circular 182,940 53.5 173 162 - - - 11 genome Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-030 [PROTEOBACTERIA] (AP011173) circular 49,961 53.9 59 58 - - - 1 genome Acetobacter pasteurianus IFO 3283-22 chromosome [PROTEOBACTERIA] (AP011142) circular 2,907,267 53.0 2,722 2,620 15 57 1 29 genome Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-010 [PROTEOBACTERIA] (AP011143) circular 191,427 53.4 181 170 - - - 11 genome Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-020 [PROTEOBACTERIA] (AP011144) circular 182,940 53.5 173 162 - - - 11 genome Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-030 [PROTEOBACTERIA] (AP011145) circular 49,961 53.9 59 58 - - - 1 genome Acetobacter pasteurianus IFO 3283-26 chromosome [PROTEOBACTERIA] (AP011149) circular 2,907,309 53.0 2,723 2,621 15 57 1 29 genome Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013 [PROTEOBACTERIA] (AP011150) circular 191,419 53.4 181 170 - - - 11 genome Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-020 [PROTEOBACTERIA] (AP011151) circular 182,940 53.5 173 162 - - - 11 genome Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-030 [PROTEOBACTERIA] (AP011152) circular 49,961 53.9 59 58 - - - 1 genome Acetobacter pasteurianus IFO 3283-32 chromosome [PROTEOBACTERIA] (AP011156) circular 2,904,642 53.0 2,722 2,619 15 57 1 29 genome Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012 [PROTEOBACTERIA] (AP011157) circular 191,443 53.4 183 171 - - - 12 genome Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-020 [PROTEOBACTERIA] (AP011158) circular 182,940 53.5 173 162 - - - 11 genome Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-020 [PROTEOBACTERIA] (AP011159) circular 49,961 53.9 59 58 - - - 1 genome Acetobacterium woodii DSM 1030 chromosome [] (CP002987) circular 4,044,777 39.3 3,649 3,521 16 58 1 53 genome Acetohalobium arabaticum DSM 5501 chromosome [FIRMICUTES] (CP002105) circular 2,469,596 36.6 2,396 2,286 15 67 2 26 genome laidlawii PG-8A chromosome [] (CP000896) circular 1,496,992 31.9 1,419 1,363 6 36 1 13 genome Achromobacter denitrificans plasmid pEST4011 [PROTEOBACTERIA] (AY540995) circular 76,958 62.0 61 60 - - - - plasmid Achromobacter xylosoxidans A8 chromosome [PROTEOBACTERIA] (CP002287) circular 7,013,095 66.0 6,455 6,354 10 60 2 29 genome Achromobacter xylosoxidans A8 plasmid pA81 [PROTEOBACTERIA] (AJ515144) circular 98,192 62.2 103 100 - - - 3 plasmid Achromobacter xylosoxidans A8 plasmid pA81e [PROTEOBACTERIA] (CP002288) circular 98,156 62.2 99 92 - - - 7 genome Achromobacter xylosoxidans A8 plasmid pA82 [PROTEOBACTERIA] (CP002289) circular 247,895 61.3 237 234 - - - 3 genome Acidaminococcus fermentans DSM 20731 chromosome [FIRMICUTES] (CP001859) circular 2,329,769 55.8 2,139 2,023 18 60 2 36 genome Acidaminococcus intestini RyC-MR95 chromosome [FIRMICUTES] (CP003058) circular 2,487,765 50.0 2,400 2,304 9 52 1 34 genome Acidimicrobium ferrooxidans DSM 10331 chromosome [] (CP001631) circular 2,158,157 68.3 2,109 2,017 6 45 2 38 genome Acidiphilium cryptum JF-5 chromosome [PROTEOBACTERIA] (CP000697) circular 3,389,227 68.0 3,114 3,038 6 48 3 19 genome Acidiphilium cryptum JF-5 plasmid pACRY01 [PROTEOBACTERIA] (CP000689) circular 203,589 62.3 168 146 - - - 22 genome Acidiphilium cryptum JF-5 plasmid pACRY02 [PROTEOBACTERIA] (CP000690) circular 187,422 61.9 169 159 - - - 10 genome Acidiphilium cryptum JF-5 plasmid pACRY03 [PROTEOBACTERIA] (CP000691) circular 88,953 62.1 73 71 - - - 2 genome Acidiphilium cryptum JF-5 plasmid pACRY04 [PROTEOBACTERIA] (CP000692) circular 37,415 59.6 30 30 - - - - genome Acidiphilium cryptum JF-5 plasmid pACRY05 [PROTEOBACTERIA] (CP000693) circular 37,155 60.9 28 25 - - - 3 genome Acidiphilium cryptum JF-5 plasmid pACRY06 [PROTEOBACTERIA] (CP000694) circular 8,781 61.0 6 6 - - - - genome Acidiphilium cryptum JF-5 plasmid pACRY08 [PROTEOBACTERIA] (CP000696) circular 4,909 58.7 5 5 - - - - genome Acidiphilium multivorum AIU301 chromosome [PROTEOBACTERIA] (AP012035) circular 3,749,411 67.6 3,428 3,323 6 48 3 48 genome Acidiphilium multivorum AIU301 plasmid pACMV1 [PROTEOBACTERIA] (AP012036) circular 271,573 62.9 246 230 - - - 16 genome Acidiphilium multivorum AIU301 plasmid pACMV2 [PROTEOBACTERIA] (AP012037) circular 65,564 61.9 58 54 - - - 4 genome Acidiphilium multivorum AIU301 plasmid pACMV3 [PROTEOBACTERIA] (AP012038) circular 54,248 61.2 55 50 - - - 5 genome Acidiphilium multivorum AIU301 plasmid pACMV4 [PROTEOBACTERIA] (AP012039) circular 40,588 60.0 33 32 - - - 1 genome Acidiphilium multivorum AIU301 plasmid pACMV5 [PROTEOBACTERIA] (AP012040) circular 14,328 58.9 13 13 - - - - genome Acidiphilium multivorum AIU301 plasmid pACMV6 [PROTEOBACTERIA] (AP012041) circular 12,125 59.6 12 12 - - - - genome Acidiphilium multivorum AIU301 plasmid pACMV7 [PROTEOBACTERIA] (AP012042) circular 5,178 57.6 6 5 - - - 1 genome Acidiphilium multivorum plasmid pAM5 [PROTEOBACTERIA] (DQ499634) circular 5,161 57.5 5 5 - - - - plasmid Acidithiobacillus caldus plasmid pTC-F14 [PROTEOBACTERIA] (AF325537) circular 14,155 55.7 16 16 - - - - plasmid Acidithiobacillus caldus plasmid pTcM1 [PROTEOBACTERIA] (EU421841) circular 65,158 57.1 45 45 - - - - plasmid Acidithiobacillus caldus SM-1 chromosome [PROTEOBACTERIA] (CP002573) circular 2,932,225 61.3 2,881 2,768 6 49 1 57 genome Acidithiobacillus caldus SM-1 megaplasmid [PROTEOBACTERIA] (CP002574) circular 251,782 57.2 236 221 - - - 15 genome Acidithiobacillus caldus SM-1 plasmid pLAtc1 [PROTEOBACTERIA] (CP002575) circular 9,778 59.8 12 12 - - - - genome Acidithiobacillus caldus SM-1 plasmid pLAtc2 [PROTEOBACTERIA] (CP002576) circular 14,110 57.7 14 14 - - - - genome Acidithiobacillus caldus SM-1 plasmid pLAtc3 [PROTEOBACTERIA] (CP002577) circular 29,704 58.8 30 30 - - - - genome Acidithiobacillus ferrivorans SS3 chromosome [PROTEOBACTERIA] (CP002985) circular 3,207,552 56.6 3,140 2,990 6 48 2 94 genome Acidithiobacillus ferrooxidans ATCC 23270 chromosome [PROTEOBACTERIA] (CP001219) circular 2,982,397 58.8 3,030 2,894 6 79 3 48 genome Acidithiobacillus ferrooxidans ATCC 53993 chromosome [PROTEOBACTERIA] (CP001132) circular 2,885,038 58.9 2,862 2,755 6 46 2 53 genome Acidithiobacillus ferrooxidans plasmid pTF5 [PROTEOBACTERIA] (U73041) circular 19,792 56.1 15 13 - - - 2 plasmid Acidobacterium capsulatum ATCC 51196 chromosome [] (CP001472) circular 4,127,356 60.5 3,396 3,281 3 45 7 60 genome Acidothermus cellulolyticus 11B chromosome [ACTINOBACTERIA] (CP000481) circular 2,443,540 66.9 2,217 2,083 3 46 4 81 genome Acidovorax avenae avenae ATCC 19860 chromosome [PROTEOBACTERIA] (CP002521) circular 5,482,170 68.8 4,749 4,632 9 52 2 53 genome Acidovorax citrulli AAC00-1 chromosome [PROTEOBACTERIA] (CP000512) circular 5,352,772 68.5 4,761 4,598 9 53 3 98 genome

1 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Acidovorax ebreus TPSY chromosome [PROTEOBACTERIA] (CP001392) circular 3,796,573 66.8 3,546 3,423 9 53 2 59 genome Acidovorax sp. JS42 chromosome [PROTEOBACTERIA] (CP000539) circular 4,448,856 66.2 4,132 3,956 9 51 3 113 genome Acidovorax sp. JS42 pAOVO01 [PROTEOBACTERIA] (CP000540) circular 72,689 62.2 86 83 - - - 3 genome Acidovorax sp. JS42 plasmid pAOVO02 [PROTEOBACTERIA] (CP000541) circular 63,609 64.6 66 63 - - - 3 genome Acidovorax sp. KKS102 chromosome [PROTEOBACTERIA] (CP003872) circular 5,196,935 64.9 4,772 4,638 9 50 1 74 genome Acinetobacter baumannii 1656-2 chromosome [PROTEOBACTERIA] (CP001921) circular 3,940,614 39.2 3,776 3,628 18 71 1 58 genome Acinetobacter baumannii 1656-2 plasmid ABKp1 [PROTEOBACTERIA] (CP001922) circular 74,451 33.5 98 98 - - - - genome Acinetobacter baumannii AB0057 chromosome [PROTEOBACTERIA] (CP001182) circular 4,050,513 39.2 3,881 3,660 18 73 1 129 genome Acinetobacter baumannii AB0057 plasmid pAB0057 [PROTEOBACTERIA] (CP001183) circular 8,729 34.4 9 9 - - - - genome Acinetobacter baumannii AB307-0294 chromosome [PROTEOBACTERIA] (CP001172) circular 3,760,981 39.0 3,511 3,363 18 73 1 56 genome Acinetobacter baumannii ACICU chromosome [PROTEOBACTERIA] (CP000863) circular 3,904,116 39.0 3,679 3,513 18 64 1 83 genome Acinetobacter baumannii ACICU plasmid pACICU1 [PROTEOBACTERIA] (CP000864) circular 28,279 37.8 36 31 - - - 5 genome Acinetobacter baumannii ACICU plasmid pACICU2 [PROTEOBACTERIA] (CP000865) circular 64,366 33.4 87 69 - - - 18 genome Acinetobacter baumannii ATCC 17978 chromosome [PROTEOBACTERIA] (CP000521) circular 3,976,747 38.9 3,889 3,787 15 69 - 2 genome Acinetobacter baumannii ATCC 17978 plasmid pAB1 [PROTEOBACTERIA] (CP000522) circular 13,408 36.2 11 11 - - - - genome Acinetobacter baumannii ATCC 17978 plasmid pAB2 [PROTEOBACTERIA] (CP000523) circular 11,302 35.2 5 5 - - - - genome Acinetobacter baumannii AYE chromosome [PROTEOBACTERIA] (CU459141) circular 3,936,291 39.4 3,768 3,622 18 72 11 45 genome Acinetobacter baumannii AYE plasmid p1ABAYE [PROTEOBACTERIA] (CU459137) circular 5,644 34.5 7 7 - - - - genome Acinetobacter baumannii AYE plasmid p2ABAYE [PROTEOBACTERIA] (CU459138) circular 9,661 34.4 9 9 - - - - genome Acinetobacter baumannii AYE plasmid p3ABAYE [PROTEOBACTERIA] (CU459140) circular 94,413 37.5 89 82 - - - 7 genome Acinetobacter baumannii AYE plasmid p4ABAYE [PROTEOBACTERIA] (CU459139) circular 2,726 37.6 5 5 - - - - genome Acinetobacter baumannii MDR-TJ chromosome [PROTEOBACTERIA] (CP003500) circular 3,964,912 39.1 3,791 3,658 18 74 2 39 genome Acinetobacter baumannii MDR-TJ plasmid pABTJ1 [PROTEOBACTERIA] (CP003501) circular 77,528 34.0 100 96 - - - 4 genome Acinetobacter baumannii MDR-ZJ06 chromosome [PROTEOBACTERIA] (CP001937) circular 3,991,133 39.0 3,820 3,667 18 69 1 65 genome Acinetobacter baumannii MDR-ZJ06 plasmid pMDR-ZJ06 [PROTEOBACTERIA] (CP001938) circular 20,301 47.4 24 21 - - - 3 genome Acinetobacter baumannii plasmid pABIR [PROTEOBACTERIA] (EU294228) circular 29,823 36.8 29 26 - - - 3 plasmid Acinetobacter baumannii plasmid pABVA01 [PROTEOBACTERIA] (FM210331) circular 8,963 34.5 8 8 - - - - plasmid Acinetobacter baumannii plasmid pMAC [PROTEOBACTERIA] (AY541809) circular 9,540 34.7 11 11 - - - - plasmid Acinetobacter baumannii plasmid pMMCU2 [PROTEOBACTERIA] (GQ476987) circular 10,270 36.2 7 7 - - - - plasmid Acinetobacter baumannii plasmid pTS236 [PROTEOBACTERIA] (JN872565) circular 2,252 41.4 3 3 - - - - plasmid Acinetobacter baumannii SDF chromosome [PROTEOBACTERIA] (CU468230) circular 3,421,954 39.2 3,598 2,913 15 64 8 598 genome Acinetobacter baumannii SDF plasmid p1ABSDF [PROTEOBACTERIA] (CU468231) circular 6,106 34.5 8 8 - - - - genome Acinetobacter baumannii SDF plasmid p2ABSDF [PROTEOBACTERIA] (CU468232) circular 25,014 34.9 32 30 - - - 2 genome Acinetobacter baumannii SDF plasmid p3ABSDF [PROTEOBACTERIA] (CU468233) circular 24,922 34.4 26 24 - - - 2 genome Acinetobacter baumannii TCDC-AB0715 chromosome [PROTEOBACTERIA] (CP002522) circular 4,138,388 39.0 3,905 3,851 12 42 - - genome Acinetobacter baumannii TCDC-AB0715 plasmid p1ABTCDC0715 [PROTEOBACTERIA] (CP002523) circular 8,731 34.4 10 10 - - - - genome Acinetobacter baumannii TCDC-AB0715 plasmid p2ABTCDC0715 [PROTEOBACTERIA] (CP002524) circular 70,894 33.3 95 95 - - - - genome Acinetobacter baumannii TYTH-1 chromosome [PROTEOBACTERIA] (CP003856) circular 3,957,368 39.0 3,754 3,628 12 75 1 38 genome Acinetobacter calcoaceticus plasmid pMMCU1 [PROTEOBACTERIA] (GQ342610) circular 8,771 34.8 6 6 - - - - plasmid Acinetobacter oleivorans DR1 chromosome [PROTEOBACTERIA] (CP002080) circular 4,152,543 38.7 3,903 3,787 18 71 1 26 genome Acinetobacter pittii PHEA-2 chromosome [PROTEOBACTERIA] (CP002177) circular 3,862,530 38.8 3,674 3,599 6 69 - - genome Acinetobacter sp. ADP1 chromosome [PROTEOBACTERIA] (CR543861) circular 3,598,621 40.4 3,332 3,222 21 76 4 9 genome Acinetobacter venetianus plasmid pAV1 [PROTEOBACTERIA] (DQ278485) linear 10,820 34.6 11 11 - - - - plasmid Acinetobacter venetianus plasmid pAV2 [PROTEOBACTERIA] (DQ278486) linear 15,135 36.4 16 16 - - - - plasmid Actinobacillus pleuropneumoniae plasmid p11745 [PROTEOBACTERIA] (DQ176855) circular 5,486 38.1 4 4 - - - - plasmid Actinobacillus pleuropneumoniae plasmid p12494 [PROTEOBACTERIA] (DQ517426) circular 14,393 32.9 10 10 - - - - plasmid Actinobacillus pleuropneumoniae plasmid pHB0503 [PROTEOBACTERIA] (EU715370) circular 15,079 41.6 16 16 - - - - plasmid Actinobacillus pleuropneumoniae plasmid pMS260 [PROTEOBACTERIA] (AB109805) circular 8,124 60.5 10 10 - - - - plasmid Actinobacillus pleuropneumoniae sv. 3 str. JL03 chromosome [PROTEOBACTERIA] (CP000687) circular 2,242,062 41.2 2,115 1,984 19 63 1 48 genome Actinobacillus pleuropneumoniae sv. 5b str. L20 chromosome [PROTEOBACTERIA] (CP000569) circular 2,274,482 41.3 2,168 2,042 16 62 1 47 genome Actinobacillus pleuropneumoniae sv. 7 str. AP76 chromosome [PROTEOBACTERIA] (CP001091) circular 2,331,981 41.2 2,220 2,085 19 62 1 53 genome Actinobacillus porcitonsillarum plasmid pIMD50 [PROTEOBACTERIA] (AJ830711) circular 8,751 41.0 12 10 - - - 2 plasmid Actinobacillus porcitonsillarum plasmid pKMA1467 [PROTEOBACTERIA] (AJ830712) circular 11,115 38.8 13 12 - - - 1 plasmid Actinobacillus porcitonsillarum plasmid pKMA202 [PROTEOBACTERIA] (AM748706) circular 13,425 39.3 18 14 - - - 4 plasmid Actinobacillus porcitonsillarum plasmid pKMA5 [PROTEOBACTERIA] (AM748705) circular 9,549 39.5 12 10 - - - 2 plasmid Actinobacillus porcitonsillarum plasmid pKMA505 [PROTEOBACTERIA] (AJ830710) circular 8,632 38.1 14 12 - - - 2 plasmid Actinobacillus succinogenes 130Z chromosome [PROTEOBACTERIA] (CP000746) circular 2,319,663 44.9 2,188 2,084 19 59 3 23 genome Actinobacillus suis H91-0380 chromosome [PROTEOBACTERIA] (CP003875) circular 2,484,940 40.2 2,318 2,210 19 59 1 29 genome Actinoplanes missouriensis 431 chromosome [ACTINOBACTERIA] (AP012319) circular 8,773,466 70.8 8,006 7,790 18 58 3 13 genome Actinoplanes sp. SE50/110 chromosome [ACTINOBACTERIA] (CP003170) circular 9,239,851 71.3 8,199 7,912 18 98 2 169 genome Actinosynnema mirum DSM 43827 chromosome [ACTINOBACTERIA] (CP001630) circular 8,248,144 73.7 7,026 6,824 13 59 2 127 genome Advenella kashmirensis WT001 chromosome [PROTEOBACTERIA] (CP003555) circular 4,365,995 54.9 4,220 3,176 6 41 1 996 genome Advenella kashmirensis WT001 plasmid pWTk445 [PROTEOBACTERIA] (CP003556) circular 57,884 46.7 60 57 - - - 3 genome Aequorivita sublithincola DSM 14238 chromosome [] (CP003280) circular 3,520,671 36.2 3,196 3,126 6 36 2 26 genome Aerococcus urinae ACS-120-V-Col10a chromosome [FIRMICUTES] (CP002512) circular 2,080,974 41.9 1,947 1,791 12 60 3 81 genome Aeromonas bestiarum plasmid pAb5S9 [PROTEOBACTERIA] (EF495198) circular 24,716 54.0 16 16 - - - - plasmid Aeromonas caviae plasmid pFBAOT6 [PROTEOBACTERIA] (CR376602) circular 84,749 57.3 95 92 - - - 3 plasmid Aeromonas hydrophila hydrophila ATCC 7966 chromosome [PROTEOBACTERIA] (CP000462) circular 4,744,448 61.5 4,284 4,119 31 128 1 7 genome Aeromonas hydrophila plasmid pAHH01 [PROTEOBACTERIA] (JN315882) circular 8,979 53.8 14 14 - - - - plasmid Aeromonas hydrophila plasmid pBRST7.6 [PROTEOBACTERIA] (EU925817) circular 7,621 59.7 6 6 - - - - plasmid Aeromonas hydrophila plasmid pRA1 [PROTEOBACTERIA] (FJ705807) circular 143,963 50.6 158 158 - - - - plasmid Aeromonas hydrophila plasmid pRA3 [PROTEOBACTERIA] (DQ401103) circular 45,909 53.5 50 50 - - - - plasmid Aeromonas salmonicida plasmid pRAS3.2 [PROTEOBACTERIA] (AY043299) circular 11,823 59.0 7 7 - - - - plasmid Aeromonas salmonicida salmonicida A449 chromosome [PROTEOBACTERIA] (CP000644) circular 4,702,402 58.5 4,320 3,981 28 109 9 193 genome Aeromonas salmonicida salmonicida A449 plasmid pAsa1 [PROTEOBACTERIA] (AY301063) circular 5,424 57.0 10 9 - - 1 - genome Aeromonas salmonicida salmonicida A449 plasmid pAsa3 [PROTEOBACTERIA] (AY301065) circular 5,616 54.5 9 8 - - 1 - genome Aeromonas salmonicida salmonicida A449 plasmid pAsa4 [PROTEOBACTERIA] (CP000645) circular 166,749 52.8 175 164 - - - 11 genome Aeromonas salmonicida salmonicida A449 plasmid pAsa5 [PROTEOBACTERIA] (CP000646) circular 155,098 54.3 168 157 - - - 11 genome Aeromonas salmonicida salmonicida plasmid pAsal1 [PROTEOBACTERIA] (AJ508382) circular 6,371 55.0 4 4 - - - - plasmid Aeromonas salmonicida salmonicida plasmid pAsal2 [PROTEOBACTERIA] (AJ508383) circular 5,424 57.0 7 7 - - - - plasmid Aeromonas salmonicida salmonicida plasmid pAsal5 [PROTEOBACTERIA] (AM258965) circular 18,536 53.9 17 16 - - - 1 plasmid Aeromonas salmonicida salmonicida plasmid pRAS3.1 [PROTEOBACTERIA] (AY043298) circular 11,851 58.9 7 7 - - - - plasmid Aeromonas veronii B565 chromosome [PROTEOBACTERIA] (CP002607) circular 4,551,783 58.7 4,100 3,950 31 101 1 17 genome Aggregatibacter actinomycetemcomitans ANH9381 chromosome [PROTEOBACTERIA] (CP003099) circular 2,136,808 44.4 2,064 1,841 18 51 1 153 genome Aggregatibacter actinomycetemcomitans D7S-1 chromosome [PROTEOBACTERIA] (CP003496) circular 2,309,073 44.3 2,227 2,044 19 53 1 110 genome Aggregatibacter actinomycetemcomitans plasmid pVT745 [PROTEOBACTERIA] (AF302424) circular 25,407 39.0 36 36 - - - - plasmid Aggregatibacter aphrophilus NJ8700 chromosome [PROTEOBACTERIA] (CP001607) circular 2,313,035 42.3 2,227 2,113 19 57 1 37 genome

2 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Agrobacterium fabrum (tumefaciens) C58 chromosome I [PROTEOBACTERIA] (AE007869) circular 2,841,580 59.4 2,819 2,765 6 41 5 3 genome Agrobacterium fabrum (tumefaciens) C58 chromosome II [PROTEOBACTERIA] (AE007870) linear 2,075,577 59.3 1,884 1,851 6 15 3 9 genome Agrobacterium fabrum (tumefaciens) C58 plasmid pAt [PROTEOBACTERIA] (AE007872) circular 542,868 57.3 557 542 - - - 15 genome Agrobacterium fabrum (tumefaciens) C58 plasmid pTi [PROTEOBACTERIA] (AE007871) circular 214,233 56.7 199 197 - - - 2 genome Agrobacterium fabrum (tumefaciens) plasmid pAgK84 [PROTEOBACTERIA] (AY442931) circular 44,420 53.5 36 36 - - - - plasmid Agrobacterium fabrum (tumefaciens) plasmid pTi-SAKURA [PROTEOBACTERIA] (AB016260) circular 206,479 56.0 196 195 - - - - plasmid Agrobacterium fabrum (tumefaciens) plasmid Ti [PROTEOBACTERIA] (AF242881) circular 194,140 54.6 157 157 - - - - plasmid Agrobacterium fabrum (tumefaciens) plasmid Ti plasmid pTiBo542 [PROTEOBACTERIA] (DQ058764) circular 244,978 55.1 223 223 - - - - plasmid Agrobacterium rhizogenes plasmid pRi1724 [PROTEOBACTERIA] (AP002086) circular 217,594 57.3 173 173 - - - - plasmid Agrobacterium rhizogenes plasmid pRi2659 [PROTEOBACTERIA] (EU186381) circular 185,462 58.1 146 146 - - - - plasmid Agrobacterium sp. H13-3 chromosome 1 [PROTEOBACTERIA] (CP002248) circular 2,823,930 58.8 2,746 2,680 6 41 1 18 genome Agrobacterium sp. H13-3 chromosome 2 [PROTEOBACTERIA] (CP002249) linear 2,148,289 58.5 1,912 1,866 9 16 - 21 genome Agrobacterium sp. H13-3 plasmid pAspH13-3a [PROTEOBACTERIA] (CP002250) circular 601,551 57.4 586 551 - - - 35 genome Agrobacterium vitis S4 chromosome 1 [PROTEOBACTERIA] (CP000633) circular 3,726,375 57.7 3,467 3,368 6 47 4 42 genome Agrobacterium vitis S4 chromosome 2 [PROTEOBACTERIA] (CP000634) circular 1,283,187 57.5 1,100 1,069 6 7 1 17 genome Agrobacterium vitis S4 plasmid pAtS4a [PROTEOBACTERIA] (CP000639) circular 78,730 56.8 85 85 - - - - genome Agrobacterium vitis S4 plasmid pAtS4b [PROTEOBACTERIA] (CP000635) circular 130,435 56.2 111 103 - - - 8 genome Agrobacterium vitis S4 plasmid pAtS4c [PROTEOBACTERIA] (CP000636) circular 211,620 58.6 197 167 - - - 30 genome Agrobacterium vitis S4 plasmid pAtS4e [PROTEOBACTERIA] (CP000638) circular 631,775 56.6 560 543 - - - 17 genome Agrobacterium vitis S4 plasmid pTiS4 [PROTEOBACTERIA] (CP000637) circular 258,824 56.7 248 214 - - 1 33 genome Akkermansia muciniphila ATCC BAA-835 chromosome [VERRUMICROBIA] (CP001071) circular 2,664,102 55.8 2,317 2,220 9 52 2 34 genome Alcanivorax borkumensis SK2 chromosome [PROTEOBACTERIA] (AM286690) circular 3,120,143 54.7 2,817 2,744 9 42 1 21 genome Alcanivorax dieselolei B5 chromosome [PROTEOBACTERIA] (CP003466) circular 4,928,223 61.6 4,424 4,333 6 42 1 42 genome Alicycliphilus denitrificans BC chromosome [PROTEOBACTERIA] (CP002449) circular 4,637,013 68.3 4,389 4,270 9 52 2 56 genome Alicycliphilus denitrificans BC plasmid pALIDE01 [PROTEOBACTERIA] (CP002450) circular 119,718 58.3 108 102 - - - 6 genome Alicycliphilus denitrificans BC plasmid pALIDE02 [PROTEOBACTERIA] (CP002451) circular 78,982 64.4 85 83 - - - 2 genome Alicycliphilus denitrificans K601 chromosome [PROTEOBACTERIA] (CP002657) circular 4,995,263 68.0 4,705 4,573 9 54 3 66 genome Alicycliphilus denitrificans K601 plasmid pALIDE201 [PROTEOBACTERIA] (CP002658) circular 75,488 62.2 87 87 - - - - genome Alicyclobacillus acidocaldarius acidocaldarius DSM 446 chromosome [FIRMICUTES] (CP001727) circular 3,018,755 62.3 2,923 2,803 18 64 2 36 genome Alicyclobacillus acidocaldarius acidocaldarius DSM 446 plasmid pAACI01 [FIRMICUTES] (CP001728) circular 91,726 54.1 83 82 - - - 1 genome Alicyclobacillus acidocaldarius acidocaldarius DSM 446 plasmid pAACI02 [FIRMICUTES] (CP001729) circular 87,298 55.4 87 79 - - - 8 genome Alicyclobacillus acidocaldarius acidocaldarius Tc-4-1 chromosome [FIRMICUTES] (CP002902) circular 3,124,048 61.5 3,064 2,845 18 63 1 137 genome Aliivibrio fischeri ES114 chromosome1 [PROTEOBACTERIA] (CP000020) circular 2,897,536 39.0 2,736 2,584 34 107 9 2 genome Aliivibrio fischeri ES114 chromosome2 [PROTEOBACTERIA] (CP000021) circular 1,330,333 37.0 1,192 1,174 3 11 1 3 genome Aliivibrio fischeri ES114 plasmid pES100 [PROTEOBACTERIA] (CP000022) circular 45,849 38.4 57 57 - - - - genome Aliivibrio fischeri MJ11 chromosome1 [PROTEOBACTERIA] (CP001139) circular 2,905,029 38.9 2,709 2,555 25 113 1 15 genome Aliivibrio fischeri MJ11 chromosome2 [PROTEOBACTERIA] (CP001133) circular 1,418,848 37.2 1,231 1,210 3 11 - 7 genome Aliivibrio fischeri MJ11 plasmid pMJ100 [PROTEOBACTERIA] (CP001134) circular 179,459 34.8 188 186 - - - 2 genome Aliivibrio fischeri plasmid pCG103-32 [PROTEOBACTERIA] (JQ031550) circular 32,073 37.2 37 37 - - - - plasmid Aliivibrio fischeri plasmid pES657-44 [PROTEOBACTERIA] (JQ031551) circular 48,951 38.1 83 83 - - - - plasmid Aliivibrio fischeri plasmid pKB1A97-67 [PROTEOBACTERIA] (JQ031552) circular 76,221 41.7 99 99 - - - - plasmid Aliivibrio salmonicida LFI1238 chromosome1 [PROTEOBACTERIA] (FM178379) circular 3,325,165 39.2 3,227 2,901 34 91 21 180 genome Aliivibrio salmonicida LFI1238 chromosome2 [PROTEOBACTERIA] (FM178380) circular 1,206,461 38.2 1,119 1,017 3 13 2 84 genome Aliivibrio salmonicida LFI1238 plasmid pVSAL320 [PROTEOBACTERIA] (FM178382) circular 30,807 37.3 32 30 - - - 2 genome Aliivibrio salmonicida LFI1238 plasmid pVSAL43 [PROTEOBACTERIA] (FM178384) circular 4,327 35.6 3 3 - - - - genome Aliivibrio salmonicida LFI1238 plasmid pVSAL840 [PROTEOBACTERIA] (FM178381) circular 83,540 40.1 75 75 - - - - genome Alistipes finegoldii DSM 17242 chromosome [BACTEROIDETES] (CP003274) circular 3,734,239 56.6 3,225 3,083 6 48 10 78 genome Alkalilimnicola ehrlichii MLHE-1 chromosome [PROTEOBACTERIA] (CP000453) circular 3,275,944 67.5 2,912 2,814 6 48 3 41 genome Alkaliphilus metalliredigens QYMF chromosome [FIRMICUTES] (CP000724) circular 4,929,566 36.8 4,801 4,576 31 104 3 87 genome Alkaliphilus oremlandii OhILAs chromosome [FIRMICUTES] (CP000853) circular 3,123,558 36.3 3,016 2,878 25 86 3 24 genome Allochromatium vinosum DSM 180 chromosome [PROTEOBACTERIA] (CP001896) circular 3,526,903 64.4 3,108 2,998 9 50 2 49 genome Allochromatium vinosum DSM 180 plasmid pALVIN01 [PROTEOBACTERIA] (CP001897) circular 102,242 61.9 116 112 - - - 4 genome Allochromatium vinosum DSM 180 plasmid pALVIN02 [PROTEOBACTERIA] (CP001898) circular 39,929 53.5 38 38 - - - - genome alphaproteobacterium endosymbiont of Amoeba proteus plasmid pAP3.9 [PROTEOBACTERIA] (EU727537) circular 3,869 34.7 3 3 - - - - plasmid alphaproteobacterium HIMB5 chromosome [PROTEOBACTERIA] (CP003809) circular 1,343,202 28.6 1,432 1,378 3 32 1 17 genome alphaproteobacterium HIMB59 chromosome [PROTEOBACTERIA] (CP003801) circular 1,410,127 32.3 1,512 1,467 3 35 1 6 genome Alteromonas macleodii ATCC 27126 chromosome [PROTEOBACTERIA] (CP003841) circular 4,653,851 44.7 3,950 3,792 16 52 1 89 genome Alteromonas macleodii Balearic Sea AD45 chromosome [PROTEOBACTERIA] (CP003873) circular 4,629,479 44.6 3,985 3,855 17 71 1 41 genome Alteromonas macleodii Balearic Sea AD45 plasmid pAMBAS45 [PROTEOBACTERIA] (CP003874) circular 45,406 49.7 54 53 - - - 1 genome Alteromonas macleodii Black Sea 11 chromosome [PROTEOBACTERIA] (CP003845) circular 4,480,507 44.6 3,844 3,708 17 69 1 49 genome Alteromonas macleodii English Channel 673 chromosome [PROTEOBACTERIA] (CP003844) circular 4,601,785 44.8 3,962 3,832 16 75 1 38 genome Alteromonas mediterranei AltDE1 chromosome [PROTEOBACTERIA] (CP003917) circular 4,643,844 44.9 4,084 3,943 16 67 1 57 genome Alteromonas mediterranei AltDE1 plasmid pAMDE1-300 [PROTEOBACTERIA] (CP003918) circular 303,282 41.4 282 275 - - - 7 genome Alteromonas mediterranei Deep ecotype chromosome [PROTEOBACTERIA] (CP001103) circular 4,480,937 44.9 3,983 3,779 16 61 1 126 genome Alteromonas sp. SN2 chromosome [PROTEOBACTERIA] (CP002339) circular 4,972,148 43.5 4,358 4,172 15 64 1 105 genome Aminobacterium colombiense DSM 12261 chromosome [] (CP001997) circular 1,980,592 45.3 1,945 1,874 9 47 1 14 genome Ammonifex degensii KC4 chromosome [FIRMICUTES] (CP001785) circular 2,129,237 59.4 2,185 2,084 6 48 2 45 genome Ammonifex degensii KC4 plasmid pADEG01 [FIRMICUTES] (CP001786) circular 27,830 60.7 29 28 - - - 1 genome Amphibacillus xylanus NBRC 15112 chromosome [FIRMICUTES] (AP012050) circular 2,569,486 35.7 2,425 2,312 18 55 4 36 genome Amycolatopsis benzoatilytica plasmid pA387 [ACTINOBACTERIA] (EF375609) circular 30,157 71.7 16 16 - - - - plasmid Amycolatopsis mediterranei plasmid pMEA100 [ACTINOBACTERIA] (EU149765) linear 23,290 68.4 27 27 - - - - plasmid Amycolatopsis mediterranei S699 chromosome [ACTINOBACTERIA] (CP002896) circular 10,236,779 71.3 9,419 9,310 12 52 1 44 genome Amycolatopsis mediterranei S699 chromosome [ACTINOBACTERIA] (CP003729) circular 10,246,920 71.3 9,430 9,335 12 52 1 30 genome Amycolatopsis mediterranei U32 chromosome [ACTINOBACTERIA] (CP002000) circular 10,236,715 71.3 9,292 9,228 12 52 - - genome Amycolicicoccus subflavus DQS3-9A1 chromosome [ACTINOBACTERIA] (CP002786) circular 4,738,809 62.2 4,383 4,255 9 45 1 73 genome Amycolicicoccus subflavus DQS3-9A1 plasmid pAS9A-1 [ACTINOBACTERIA] (CP002787) circular 17,897 63.9 20 20 - - - - genome Amycolicicoccus subflavus DQS3-9A1 plasmid pAS9A-2 [ACTINOBACTERIA] (CP002788) circular 106,784 61.9 94 93 - - - 1 genome Anabaena sp. 90 chromosome chANA01 [CYANOBACTERIA] (CP003284) circular 4,329,264 38.1 3,760 3,578 15 40 - 127 genome Anabaena sp. 90 chromosome chANA02 [CYANOBACTERIA] (CP003285) circular 819,965 38.2 747 711 - 4 1 31 genome Anabaena sp. 90 plasmid pANA01 [CYANOBACTERIA] (CP003286) circular 80,384 37.2 90 85 - - - 5 genome Anabaena sp. 90 plasmid pANA02 [CYANOBACTERIA] (CP003287) circular 56,037 37.3 52 52 - - - - genome Anabaena sp. 90 plasmid pANA03 [CYANOBACTERIA] (CP003288) circular 20,025 37.4 18 18 - - - - genome Anabaena variabilis ATCC 29413 chromosome [CYANOBACTERIA] (CP000117) circular 6,365,727 41.4 5,130 5,039 12 47 3 29 genome Anabaena variabilis ATCC 29413 plasmidA [CYANOBACTERIA] (CP000119) circular 366,354 40.5 350 344 - - - 6 genome Anabaena variabilis ATCC 29413 plasmidB [CYANOBACTERIA] (CP000120) circular 35,762 38.5 32 31 - - - 1 genome Anabaena variabilis ATCC 29413 plasmidC [CYANOBACTERIA] (CP000121) circular 300,758 42.0 247 243 - - - 4 genome Anaerobaculum mobile DSM 13181 chromosome [SYNERGISTETES] (CP003198) circular 2,160,700 48.0 2,080 2,008 6 49 2 15 genome

3 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Anaerococcus prevotii DSM 20548 chromosome [FIRMICUTES] (CP001708) circular 1,883,067 36.1 1,775 1,687 12 47 3 26 genome Anaerococcus prevotii DSM 20548 plasmid pAPRE01 [FIRMICUTES] (CP001709) circular 115,566 28.6 100 96 - - - 4 genome Anaerolinea thermophila UNI-1 chromosome [] (AP012029) circular 3,532,378 53.8 3,165 3,064 6 49 3 43 genome Anaeromyxobacter dehalogenans 2CP-1 chromosome [PROTEOBACTERIA] (CP001359) circular 5,029,329 74.7 4,538 4,443 6 49 2 38 genome Anaeromyxobacter dehalogenans 2CP-C chromosome [PROTEOBACTERIA] (CP000251) circular 5,013,479 74.9 4,501 4,411 6 48 3 33 genome Anaeromyxobacter sp. Fw109-5 chromosome [PROTEOBACTERIA] (CP000769) circular 5,277,990 74.4 4,551 4,484 4 62 1 38 genome Anaeromyxobacter sp. K chromosome [PROTEOBACTERIA] (CP001131) circular 5,061,632 74.8 4,512 4,432 6 49 2 23 genome Anaplasma centrale Israel chromosome [PROTEOBACTERIA] (CP001759) circular 1,206,806 50.0 1,007 937 3 37 1 29 genome Anaplasma marginale Florida chromosome [PROTEOBACTERIA] (CP001079) circular 1,202,435 49.8 1,009 942 3 37 1 26 genome Anaplasma marginale St. Maries chromosome [PROTEOBACTERIA] (CP000030) circular 1,197,687 49.8 1,011 938 3 37 1 32 genome Anaplasma phagocytophilum HZ chromosome [PROTEOBACTERIA] (CP000235) circular 1,471,282 41.6 1,141 1,058 3 37 1 42 genome Anoxybacillus flavithermus WK1 chromosome [FIRMICUTES] (CP000922) circular 2,846,746 41.8 2,967 2,784 24 77 2 80 genome Aquifex aeolicus VF5 chromosome [] (AE000657) circular 1,551,335 43.5 1,576 1,497 6 44 1 28 genome Aquifex aeolicus VF5 plasmid ece1 [AQUIFICAE] (AE000667) circular 39,456 36.4 29 29 - - - - genome Arcanobacterium haemolyticum DSM 20595 chromosome [ACTINOBACTERIA] (CP002045) circular 1,986,154 53.1 1,830 1,721 12 50 2 45 genome Arcobacter butzleri ED-1 chromosome [PROTEOBACTERIA] (AP012047) circular 2,256,675 27.1 2,223 2,147 15 54 1 6 genome Arcobacter butzleri plasmid unnamed [PROTEOBACTERIA] (EU707943) circular 1,920 26.8 1 1 - - - - plasmid Arcobacter butzleri RM4018 chromosome [PROTEOBACTERIA] (CP000361) circular 2,341,251 27.0 2,330 2,255 15 54 1 5 genome Arcobacter nitrofigilis DSM 7299 chromosome [PROTEOBACTERIA] (CP001999) circular 3,192,235 28.4 3,163 3,073 12 55 2 21 genome Arcobacter sp. L chromosome [PROTEOBACTERIA] (AP012048) circular 2,945,673 26.6 2,910 2,820 15 56 1 18 genome Aromatoleum aromaticum EbN1 chromosome [PROTEOBACTERIA] (CR555306) circular 4,296,230 65.1 4,037 3,868 12 58 1 98 genome Aromatoleum aromaticum EbN1 plasmid p1 [PROTEOBACTERIA] (CR555307) circular 207,355 57.6 234 232 - - - 2 genome Aromatoleum aromaticum EbN1 plasmid p2 [PROTEOBACTERIA] (CR555308) circular 223,670 63.1 205 188 - - - 17 genome Arthrobacter arilaitensis Re117 chromosome [ACTINOBACTERIA] (FQ311875) circular 3,859,257 59.3 3,591 3,420 19 64 1 87 genome Arthrobacter arilaitensis Re117 plasmid pRE117-1 [ACTINOBACTERIA] (FQ311475) circular 50,407 58.8 53 52 - - - 1 genome Arthrobacter aurescens TC1 chromosome [ACTINOBACTERIA] (CP000474) circular 4,597,686 62.3 4,196 4,093 18 54 2 29 genome Arthrobacter aurescens TC1 plasmid pTC1 [ACTINOBACTERIA] (CP000475) circular 328,237 64.6 277 265 - - - 12 genome Arthrobacter aurescens TC1 plasmid pTC2 [ACTINOBACTERIA] (CP000476) circular 300,725 61.3 279 269 - - - 10 genome Arthrobacter chlorophenolicus A6 chromosome [ACTINOBACTERIA] (CP001341) circular 4,395,537 66.3 3,938 3,800 15 49 2 72 genome Arthrobacter chlorophenolicus A6 plasmid pACHL01 [ACTINOBACTERIA] (CP001342) circular 426,858 64.4 564 526 - 37 - 1 genome Arthrobacter chlorophenolicus A6 plasmid pACHL02 [ACTINOBACTERIA] (CP001343) circular 158,475 61.3 147 146 - - - 1 genome Arthrobacter phenanthrenivorans Sphe3 chromosome [ACTINOBACTERIA] (CP002379) circular 4,250,414 65.6 3,932 3,782 12 50 2 86 genome Arthrobacter phenanthrenivorans Sphe3 plasmid pASPHE301 [ACTINOBACTERIA] (CP002380) circular 190,450 62.0 198 177 - - - 21 genome Arthrobacter phenanthrenivorans Sphe3 plasmid pASPHE302 [ACTINOBACTERIA] (CP002381) circular 94,456 62.4 94 92 - - - 2 genome Arthrobacter rhombi plasmid pPRH [ACTINOBACTERIA] (HQ624979) circular 5,000 66.4 6 6 - - - - plasmid Arthrobacter sp. AK-1 plasmid pSI-1 [ACTINOBACTERIA] (EF495211) circular 99,213 62.0 99 97 - - - 2 plasmid Arthrobacter sp. Chr15 plasmid pChr15 [ACTINOBACTERIA] (EF495212) circular 49,633 62.3 63 63 - - - - plasmid Arthrobacter sp. FB24 chromosome [ACTINOBACTERIA] (CP000454) circular 4,698,945 65.5 4,220 4,077 15 51 3 74 genome Arthrobacter sp. FB24 plasmid1 [ACTINOBACTERIA] (CP000455) circular 159,538 65.0 158 152 - - - 6 genome Arthrobacter sp. FB24 plasmid2 [ACTINOBACTERIA] (CP000456) circular 115,507 63.3 110 108 - - - 2 genome Arthrobacter sp. FB24 plasmid3 [ACTINOBACTERIA] (CP000457) circular 96,488 64.7 100 97 - - - 3 genome Arthrobacter sp. Rue61a chromosome [ACTINOBACTERIA] (CP003203) circular 4,736,495 62.3 4,339 4,240 18 53 1 27 genome Arthrobacter sp. Rue61a plasmid p232 [ACTINOBACTERIA] (CP003204) circular 231,551 61.5 210 206 - - - 4 genome Arthrobacter sp. Rue61a plasmid pAL1 [ACTINOBACTERIA] (CP003205) linear 112,992 60.9 111 107 - - - 4 genome Aster yellows phytoplasma plasmid pJHW [TENERICUTES] (AB064396) circular 4,278 23.9 2 2 - - - - plasmid Aster yellows witches-broom phytoplasma AYWB chromosome [TENERICUTES] (CP000061) circular 706,569 26.9 652 534 6 32 - 80 genome Aster yellows witches-broom phytoplasma AYWB plasmid pAYWB-I [TENERICUTES] (CP000062) circular 3,972 25.6 5 5 - - - - genome Aster yellows witches-broom phytoplasma AYWB plasmid pAYWB-II [TENERICUTES] (CP000063) circular 4,009 23.9 4 4 - - - - genome Aster yellows witches-broom phytoplasma AYWB plasmid pAYWB-III [TENERICUTES] (CP000064) circular 5,104 21.8 7 7 - - - - genome Aster yellows witches-broom phytoplasma AYWB plasmid pAYWB-IV [TENERICUTES] (CP000065) circular 4,316 24.4 6 6 - - - - genome Asticcacaulis excentricus CB 48 chromosome 1 [PROTEOBACTERIA] (CP002395) circular 2,588,221 59.2 2,343 2,292 3 22 2 24 genome Asticcacaulis excentricus CB 48 chromosome 2 [PROTEOBACTERIA] (CP002396) circular 1,315,949 60.4 1,149 1,104 6 27 - 12 genome Asticcacaulis excentricus CB 48 plasmid pASTEX01 [PROTEOBACTERIA] (CP002397) circular 244,260 59.8 178 178 - - - - genome Asticcacaulis excentricus CB 48 plasmid pASTEX02 [PROTEOBACTERIA] (CP002398) circular 160,346 57.3 144 139 - - - 5 genome Atopobium parvulum DSM 20469 chromosome [ACTINOBACTERIA] (CP001721) circular 1,543,805 45.7 1,406 1,340 3 45 2 16 genome Avibacterium paragallinarum plasmid p250 [PROTEOBACTERIA] (AY300023) circular 6,286 33.5 7 7 - - - - plasmid Azoarcus sp. BH72 chromosome [PROTEOBACTERIA] (AM406670) circular 4,376,040 67.9 3,997 3,883 12 55 1 46 genome Azorhizobium caulinodans ORS 571 chromosome [PROTEOBACTERIA] (AP009384) circular 5,369,772 67.3 4,812 4,667 9 53 1 82 genome Azospirillum brasilense Sp245 chromosome [PROTEOBACTERIA] (HE577327) circular 3,023,440 68.6 2,871 2,654 3 44 10 160 genome Azospirillum brasilense Sp245 plasmid AZOBR_p1 [PROTEOBACTERIA] (HE577328) circular 1,766,028 68.6 1,571 1,429 8 25 3 106 genome Azospirillum brasilense Sp245 plasmid AZOBR_p2 [PROTEOBACTERIA] (HE577329) circular 912,449 68.3 768 707 2 2 3 54 genome Azospirillum brasilense Sp245 plasmid AZOBR_p3 [PROTEOBACTERIA] (HE577330) circular 778,798 68.2 706 677 - - - 29 genome Azospirillum brasilense Sp245 plasmid AZOBR_p4 [PROTEOBACTERIA] (HE577331) circular 690,334 69.0 606 556 1 9 3 37 genome Azospirillum brasilense Sp245 plasmid AZOBR_p5 [PROTEOBACTERIA] (HE577332) circular 191,828 66.6 146 135 - - - 11 genome Azospirillum brasilense Sp245 plasmid AZOBR_p6 [PROTEOBACTERIA] (HE577333) circular 167,364 66.8 111 107 - 1 1 2 genome Azospirillum lipoferum 4B chromosome [PROTEOBACTERIA] (FQ311868) circular 2,988,332 67.6 2,769 2,683 6 47 1 32 genome Azospirillum lipoferum 4B plasmid AZO_p1e [PROTEOBACTERIA] (FQ311869) circular 1,040,425 67.6 894 865 8 12 - 9 genome Azospirillum lipoferum 4B plasmid AZO_p2 [PROTEOBACTERIA] (FQ311870) circular 750,123 67.6 636 615 6 5 - 10 genome Azospirillum lipoferum 4B plasmid AZO_p3 [PROTEOBACTERIA] (FQ311871) circular 648,491 67.8 526 515 3 2 - 6 genome Azospirillum lipoferum 4B plasmid AZO_p4 [PROTEOBACTERIA] (FQ311872) circular 645,253 68.3 566 555 - 6 - 5 genome Azospirillum lipoferum 4B plasmid AZO_p5 [PROTEOBACTERIA] (FQ311873) circular 478,032 67.7 398 384 3 8 - 3 genome Azospirillum lipoferum 4B plasmid AZO_p6 [PROTEOBACTERIA] (FQ311874) circular 295,744 67.1 226 223 - - - 3 genome Azospirillum sp. B510 chromosome [PROTEOBACTERIA] (AP010946) circular 3,311,395 67.8 3,081 2,987 6 46 2 40 genome Azospirillum sp. B510 plasmid pAB510a [PROTEOBACTERIA] (AP010947) circular 1,455,109 67.6 1,174 1,126 11 14 - 22 genome Azospirillum sp. B510 plasmid pAB510b [PROTEOBACTERIA] (AP010948) circular 723,779 67.5 643 607 3 2 - 31 genome Azospirillum sp. B510 plasmid pAB510c [PROTEOBACTERIA] (AP010949) circular 681,723 67.4 552 528 3 3 - 18 genome Azospirillum sp. B510 plasmid pAB510d [PROTEOBACTERIA] (AP010950) circular 628,837 68.0 544 531 - 6 - 7 genome Azospirillum sp. B510 plasmid pAB510e [PROTEOBACTERIA] (AP010951) circular 537,299 67.5 441 422 3 9 - 7 genome Azospirillum sp. B510 plasmid pAB510f [PROTEOBACTERIA] (AP010952) circular 261,596 65.9 192 179 - - - 13 genome Azotobacter vinelandii DJ chromosome [PROTEOBACTERIA] (CP001157) circular 5,365,318 65.7 4,793 4,647 18 64 11 53 genome Bacillus amyloliquefaciens DSM 7 chromosome [FIRMICUTES] (FN597644) circular 3,980,199 46.1 4,030 3,811 30 94 - 95 genome Bacillus amyloliquefaciens LL3 chromosome [FIRMICUTES] (CP002634) circular 3,995,227 45.7 4,032 3,882 22 72 - 56 genome Bacillus amyloliquefaciens TA208 chromosome [FIRMICUTES] (CP002627) circular 3,937,511 45.8 3,974 3,847 18 70 - 39 genome Bacillus amyloliquefaciens XH7 chromosome [FIRMICUTES] (CP002927) circular 3,939,203 45.8 3,983 3,846 21 75 - 41 genome Bacillus amyloliquefaciens Y2 chromosome [FIRMICUTES] (CP003332) circular 4,238,624 45.9 4,148 3,983 29 87 - 49 genome Bacillus anthracis A0248 chromosome [FIRMICUTES] (CP001598) circular 5,227,419 35.4 5,599 5,294 33 95 5 172 genome Bacillus anthracis A0248 plasmid pXO1 [FIRMICUTES] (CP001599) circular 181,677 32.5 173 160 - - 2 11 genome

4 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Bacillus anthracis A0248 plasmid pXO2 [FIRMICUTES] (CP001597) circular 94,830 33.0 95 90 - - - 5 genome Bacillus anthracis A2012 plasmid pXO1 [FIRMICUTES] (AE011190) circular 181,677 32.5 221 196 - - 4 21 plasmid Bacillus anthracis A2012 plasmid pXO2 [FIRMICUTES] (AE011191) circular 94,829 33.0 113 101 - - - 12 plasmid Bacillus anthracis Ames Ancestor chromosome [FIRMICUTES] (AE017334) circular 5,227,419 35.4 5,591 5,291 33 95 - 172 genome Bacillus anthracis Ames Ancestor plasmid pXO1 [FIRMICUTES] (AE017336) circular 181,677 32.5 171 160 - - - 11 genome Bacillus anthracis Ames Ancestor plasmid pXO2 [FIRMICUTES] (AE017335) circular 94,830 33.0 95 90 - - - 5 genome Bacillus anthracis Ames chromosome [FIRMICUTES] (AE016879) circular 5,227,293 35.4 5,636 5,326 33 95 4 178 genome Bacillus anthracis CDC 684 chromosome [FIRMICUTES] (CP001215) circular 5,230,115 35.4 5,600 5,288 33 97 5 177 genome Bacillus anthracis CDC 684 plasmid pX01 [FIRMICUTES] (CP001216) circular 181,773 32.5 173 161 - - 2 10 genome Bacillus anthracis CDC 684 plasmid pX02 [FIRMICUTES] (CP001214) circular 94,875 33.1 94 89 - - - 5 genome Bacillus anthracis H9401 chromosome [FIRMICUTES] (CP002091) circular 5,218,947 35.4 5,580 5,275 30 96 - 179 genome Bacillus anthracis H9401 plasmid BAP1 [FIRMICUTES] (CP002092) circular 181,700 32.5 171 157 - - - 14 genome Bacillus anthracis H9401 plasmid BAP2e [FIRMICUTES] (CP002093) circular 94,824 33.1 94 88 - - - 6 genome Bacillus anthracis plasmid pX01 [FIRMICUTES] (AF065404) circular 181,654 32.5 142 142 - - - - plasmid Bacillus anthracis plasmid pX02 [FIRMICUTES] (AF188935) circular 96,231 33.1 84 84 - - - - plasmid Bacillus anthracis Sterne chromosome [FIRMICUTES] (AE017225) circular 5,228,663 35.4 5,263 4,952 33 95 - 182 genome Bacillus atrophaeus 1942 chromosome [FIRMICUTES] (CP002207) circular 4,168,266 43.2 4,086 3,943 24 80 - 39 genome Bacillus cellulosilyticus DSM 2522 chromosome [FIRMICUTES] (CP002394) circular 4,681,672 36.5 4,271 4,124 30 79 1 37 genome Bacillus cereus 03BB102 chromosome [FIRMICUTES] (CP001407) circular 5,269,628 35.4 5,517 5,277 42 105 4 89 genome Bacillus cereus 03BB102 plasmid p03BB102_179 [FIRMICUTES] (CP001406) circular 179,680 32.2 165 152 - - - 13 genome Bacillus cereus AH187 chromosome [FIRMICUTES] (CP001177) circular 5,269,030 35.6 5,523 5,280 42 104 12 85 genome Bacillus cereus AH187 plasmid pAH187_270 [FIRMICUTES] (CP001179) circular 270,082 34.2 239 224 - - 4 11 genome Bacillus cereus AH187 plasmid pAH187_45 [FIRMICUTES] (CP001180) circular 45,173 35.5 55 54 - - - 1 genome Bacillus cereus AH187 plasmid pCER270 [FIRMICUTES] (DQ889676) circular 270,082 34.2 250 235 - - - 15 plasmid Bacillus cereus AH818 plasmid pPER272 [FIRMICUTES] (DQ889678) circular 272,145 33.6 278 264 - - - 14 plasmid Bacillus cereus AH820 chromosome [FIRMICUTES] (CP001283) linear 5,302,683 35.4 5,561 5,319 36 96 3 107 genome Bacillus cereus AH820 plasmid pAH820_272 [FIRMICUTES] (CP001285) linear 272,145 33.6 275 260 - - - 15 genome Bacillus cereus AH820 plasmid pPER272 [FIRMICUTES] (DQ889677) circular 272,145 33.6 275 260 - - - 15 plasmid Bacillus cereus ATCC 10987 chromosome [FIRMICUTES] (AE017194) circular 5,224,283 35.6 5,395 5,110 36 97 - 152 genome Bacillus cereus ATCC 10987 plasmid pBc10987 [FIRMICUTES] (AE017195) circular 208,369 33.4 206 198 - - - 8 genome Bacillus cereus ATCC 14579 chromosome [FIRMICUTES] (AE016877) circular 5,411,809 35.3 5,473 5,210 39 108 - 16 genome Bacillus cereus B4264 chromosome [FIRMICUTES] (CP001176) circular 5,419,036 35.3 5,511 5,295 42 108 2 64 genome Bacillus cereus bv. anthracis CI chromosome [FIRMICUTES] (CP001746) circular 5,196,054 35.4 5,455 5,124 33 102 18 178 genome Bacillus cereus bv. anthracis CI plasmid pBAslCI14 [FIRMICUTES] (CP001749) circular 14,219 37.9 18 16 - - 2 - genome Bacillus cereus bv. anthracis CI plasmid pCI-XO1 [FIRMICUTES] (CP001747) circular 181,907 32.5 173 160 - - 3 10 genome Bacillus cereus bv. anthracis CI plasmid pCI-XO2 [FIRMICUTES] (CP001748) circular 94,469 33.1 94 86 - - 1 7 genome Bacillus cereus E33L chromosome [FIRMICUTES] (CP000001) circular 5,300,915 35.4 5,507 5,282 39 96 - 90 genome Bacillus cereus E33L plasmid pE33L466 [FIRMICUTES] (CP000040) circular 466,370 33.1 439 376 - - - 63 genome Bacillus cereus E33L plasmid pE33L5 [FIRMICUTES] (CP000041) circular 5,108 30.9 6 6 - - - - genome Bacillus cereus E33L plasmid pE33L54 [FIRMICUTES] (CP000042) circular 53,501 31.9 54 43 - - - 11 genome Bacillus cereus E33L plasmid pE33L9 [FIRMICUTES] (CP000044) circular 9,150 31.0 9 9 - - - - genome Bacillus cereus F837/76 chromosome [FIRMICUTES] (CP003187) circular 5,222,906 35.4 5,414 5,141 36 105 - 132 genome Bacillus cereus F837/76 plasmid pF837_55 [FIRMICUTES] (CP003188) circular 55,304 36.2 66 63 - - - 3 genome Bacillus cereus FRI-35 chromosome [FIRMICUTES] (CP003747) circular 5,083,176 35.6 5,302 5,045 39 105 - 113 genome Bacillus cereus FRI-35 plasmid p01 [FIRMICUTES] (CP003748) circular 218,786 33.4 202 198 - - - 4 genome Bacillus cereus FRI-35 plasmid p02 [FIRMICUTES] (CP003749) circular 40,993 32.5 42 42 - - - - genome Bacillus cereus FRI-35 plasmid p03 [FIRMICUTES] (CP003750) circular 36,273 30.7 32 30 - 1 - 1 genome Bacillus cereus FRI-35 plasmid p04 [FIRMICUTES] (CP003751) circular 3,091 34.9 2 2 - - - - genome Bacillus cereus G9241 plasmid pBC210 [FIRMICUTES] (DQ889679) circular 209,385 31.7 ------plasmid Bacillus cereus G9241 plasmid pBCXO1 [FIRMICUTES] (DQ889680) circular 190,861 32.6 ------plasmid Bacillus cereus G9842 chromosome [FIRMICUTES] (CP001186) linear 5,387,334 35.3 5,437 5,211 39 97 2 88 genome Bacillus cereus G9842 plasmid pG9842_140 [FIRMICUTES] (CP001188) linear 140,001 32.9 110 107 - 2 - 1 genome Bacillus cereus G9842 plasmid pG9842_209 [FIRMICUTES] (CP001187) linear 209,488 30.0 230 226 - - - 4 genome Bacillus cereus H3081.97 plasmid pH308197_10 [FIRMICUTES] (CP001168) circular 10,077 30.1 11 10 - - - 1 plasmid Bacillus cereus H3081.97 plasmid pH308197_11 [FIRMICUTES] (CP001167) circular 11,567 32.9 14 14 - - - - plasmid Bacillus cereus H3081.97 plasmid pH308197_258 [FIRMICUTES] (CP001166) circular 258,484 34.1 224 213 - - - 11 plasmid Bacillus cereus H3081.97 plasmid pH308197_29 [FIRMICUTES] (CP001169) circular 29,189 32.3 34 34 - - - - plasmid Bacillus cereus H3081.97 plasmid pH308197_73 [FIRMICUTES] (CP001170) circular 72,792 30.2 90 88 - - - 2 plasmid Bacillus cereus NC7401 chromosome [FIRMICUTES] (AP007209) circular 5,221,581 35.6 5,448 5,222 42 104 - 80 genome Bacillus cereus NC7401 plasmid pNC1 [FIRMICUTES] (AP007211) circular 47,972 36.5 67 66 - - - 1 genome Bacillus cereus NC7401 plasmid pNC3 [FIRMICUTES] (AP007213) circular 3,869 34.7 6 6 - - - - genome Bacillus cereus NC7401 plasmid pNCcld [FIRMICUTES] (AP007210) circular 270,082 34.2 235 224 - - - 11 genome Bacillus cereus Q1 chromosome [FIRMICUTES] (CP000227) circular 5,214,195 35.6 5,324 5,155 39 94 - 96 genome Bacillus cereus Q1 plasmid pBc239 [FIRMICUTES] (CP000228) circular 239,246 33.5 215 206 - - - 9 genome Bacillus cereus Q1 plasmid pBc53 [FIRMICUTES] (CP000229) circular 52,766 35.1 67 66 - - - 1 genome Bacillus cereus VPC1401 plasmid pLVP1401 [FIRMICUTES] (FR675941) circular 56,149 31.1 65 65 - - - - plasmid Bacillus clausii KSM-K16 chromosome [FIRMICUTES] (AP006627) circular 4,303,871 44.8 4,270 4,125 22 75 - 48 genome Bacillus coagulans 2-6 chromosome [FIRMICUTES] (CP002472) circular 3,073,079 47.3 3,058 2,852 26 71 - 109 genome Bacillus coagulans 36D1 chromosome [FIRMICUTES] (CP003056) circular 3,552,226 46.5 3,430 3,243 30 84 - 73 genome Bacillus coagulans plasmid pMSR0 [FIRMICUTES] (EF015591) circular 6,823 36.9 9 9 - - - - plasmid Bacillus cytotoxicus NVH 391-98 chromosome [FIRMICUTES] (CP000764) circular 4,087,024 35.9 4,052 3,758 39 106 2 147 genome Bacillus halodurans C-125 chromosome [FIRMICUTES] (BA000004) circular 4,202,352 43.7 4,076 3,903 25 78 2 68 genome Bacillus licheniformis 63.1 plasmid pBL63.1 [FIRMICUTES] (AJ748844) circular 3,649 35.0 2 2 - - - - plasmid Bacillus licheniformis DSM 13 = ATCC 14580 chromosome [FIRMICUTES] (AE017333) circular 4,222,645 46.2 4,296 4,161 21 72 - 42 genome Bacillus licheniformis DSM 13 = ATCC 14580 chromosome [FIRMICUTES] (CP000002) circular 4,222,597 46.2 4,294 4,158 21 72 - 43 genome Bacillus megaterium DSM 319 chromosome [FIRMICUTES] (CP001982) circular 5,097,447 38.1 4,121 4,858 33 114 - 116 genome Bacillus megaterium QM B1551 chromosome [FIRMICUTES] (CP001983) circular 5,097,129 38.3 5,111 4,879 34 118 - 80 genome Bacillus megaterium QM B1551 plasmid pB500 [FIRMICUTES] (CP001988) circular 66,985 33.9 68 68 - - - - genome Bacillus megaterium QM B1551 plasmid pBM300 [FIRMICUTES] (CP001986) circular 26,587 35.5 23 22 - - - 1 genome Bacillus megaterium QM B1551 plasmid pBM400 [FIRMICUTES] (CP001987) circular 53,865 36.5 68 46 3 18 - 1 genome Bacillus megaterium QM B1551 plasmid pBM600 [FIRMICUTES] (CP001989) circular 99,694 33.0 85 82 - - - 3 genome Bacillus megaterium QM B1551 plasmid pBM700 [FIRMICUTES] (CP001990) circular 164,406 33.5 158 153 - 1 - 4 genome Bacillus megaterium WSH-002 chromosome [FIRMICUTES] (CP003017) circular 4,983,975 38.2 5,015 4,700 30 99 - 186 genome Bacillus megaterium WSH-002 plasmid WSH-002_p1 [FIRMICUTES] (CP003018) circular 74,613 36.0 80 58 3 17 - 2 genome Bacillus methanolicus MGA3 plasmid pBM19 [FIRMICUTES] (AY386314) circular 19,167 36.7 15 15 - - - - plasmid Bacillus methylotrophicus CAU B946 chromosome [FIRMICUTES] (HE617159) circular 4,019,861 46.5 3,929 3,745 30 95 - 59 genome Bacillus methylotrophicus FZB42 chromosome [FIRMICUTES] (CP000560) circular 3,918,589 46.5 3,797 3,627 29 89 1 51 genome

5 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Bacillus methylotrophicus YAU B9601-Y2 chromosome [FIRMICUTES] (HE774679) circular 4,242,774 45.9 4,151 3,987 30 91 - 43 genome Bacillus mycoides DX plasmid pBMYdx [FIRMICUTES] (AJ272266) circular 3,377 35.4 2 2 - - - - plasmid Bacillus pseudofirmus OF4 chromosome [FIRMICUTES] (CP001878) circular 3,858,997 40.3 3,841 3,704 22 75 - 40 genome Bacillus pseudofirmus OF4 plasmid pBpOF4-01 [FIRMICUTES] (CP001879) circular 285,222 36.0 265 258 - - - 7 genome Bacillus pseudofirmus OF4 plasmid pBpOF4-02 [FIRMICUTES] (CP001880) circular 105,029 35.5 105 102 - 2 - 1 genome Bacillus pumilus SAFR-032 chromosome [FIRMICUTES] (CP000813) circular 3,704,464 41.3 3,825 3,681 21 69 3 52 genome Bacillus selenitireducens MLS10 chromosome [FIRMICUTES] (CP001791) circular 3,592,487 48.7 3,368 3,210 22 68 1 67 genome Bacillus sp. BS-01 plasmid pBS-01 [FIRMICUTES] (GU591497) circular 16,492 33.4 4 4 - - - - plasmid Bacillus sp. JS chromosome [FIRMICUTES] (CP003492) circular 4,120,406 43.9 4,174 3,997 30 86 - 61 genome Bacillus subtilis BSn5 chromosome [FIRMICUTES] (CP002468) circular 4,093,599 43.8 4,240 4,059 30 83 - 68 genome Bacillus subtilis natto IAM 11631 plasmid pLS32 [FIRMICUTES] (AB615353) circular 85,603 35.1 106 104 - 2 - - plasmid Bacillus subtilis natto IFO 3335 plasmid pLS20 [FIRMICUTES] (AB615352) circular 65,774 37.8 108 108 - - - - plasmid Bacillus subtilis QB928 chromosome [FIRMICUTES] (CP003783) circular 4,146,839 43.6 4,344 4,203 30 86 4 21 genome Bacillus subtilis spizizenii TU-B-10 chromosome [FIRMICUTES] (CP002905) circular 4,207,222 43.8 4,301 4,086 30 92 - 93 genome Bacillus subtilis spizizenii W23 chromosome [FIRMICUTES] (CP002183) circular 4,027,676 43.9 4,129 3,963 24 77 2 63 genome Bacillus subtilis subtilis 168 chromosome [FIRMICUTES] (AL009126) circular 4,215,606 43.5 4,421 4,175 30 86 62 68 genome Bacillus subtilis subtilis RO-NN-1 chromosome [FIRMICUTES] (CP002906) circular 4,011,949 43.9 3,965 3,802 30 86 - 47 genome Bacillus thuringiensis Al Hakam chromosome [FIRMICUTES] (CP000485) circular 5,257,091 35.4 5,457 5,217 42 104 - 94 genome Bacillus thuringiensis Al Hakam plasmid pALH1 [FIRMICUTES] (CP000486) circular 55,939 36.2 72 71 - - - 1 genome Bacillus thuringiensis BMB171 chromosome [FIRMICUTES] (CP001903) circular 5,330,088 35.3 5,484 5,251 42 102 - 89 genome Bacillus thuringiensis BMB171 plasmid pBMB171 [FIRMICUTES] (CP001904) circular 312,963 33.3 268 240 - - - 28 genome Bacillus thuringiensis Bt407 chromosome [FIRMICUTES] (CP003889) circular 5,500,501 35.4 5,588 5,361 42 107 - 78 genome Bacillus thuringiensis Bt407 plasmid BTB_15p [FIRMICUTES] (CP003892) circular 15,189 35.7 14 14 - - - - genome Bacillus thuringiensis Bt407 plasmid BTB_2p [FIRMICUTES] (CP003897) circular 2,062 34.8 3 3 - - - - genome Bacillus thuringiensis Bt407 plasmid BTB_502p [FIRMICUTES] (CP003890) circular 501,911 31.5 712 681 - 31 - - genome Bacillus thuringiensis Bt407 plasmid BTB_78p [FIRMICUTES] (CP003891) circular 77,895 32.3 86 86 - - - - genome Bacillus thuringiensis Bt407 plasmid BTB_7p [FIRMICUTES] (CP003894) circular 7,635 32.2 9 9 - - - - genome Bacillus thuringiensis Bt407 plasmid BTB_9p [FIRMICUTES] (CP003898) circular 8,513 30.8 9 9 - - - - genome Bacillus thuringiensis C002 plasmid pDAN-involved [FIRMICUTES] (AY126018) circular 6,909 32.1 12 12 - - - - plasmid Bacillus thuringiensis chinensis CT-43 chromosome [FIRMICUTES] (CP001907) circular 5,486,830 35.4 5,564 5,293 39 85 - 147 genome Bacillus thuringiensis chinensis CT-43 plasmid pBMB0558 [FIRMICUTES] (HM037272) circular 109,464 34.9 149 149 - - - - plasmid Bacillus thuringiensis chinensis CT-43 plasmid pCT127 [FIRMICUTES] (CP001908) circular 127,885 32.1 133 125 - - - 8 genome Bacillus thuringiensis chinensis CT-43 plasmid pCT14 [FIRMICUTES] (CP001909) circular 14,860 31.5 20 20 - - - - genome Bacillus thuringiensis chinensis CT-43 plasmid pCT281 [FIRMICUTES] (CP001910) circular 281,231 33.0 255 234 - - - 21 genome Bacillus thuringiensis chinensis CT-43 plasmid pCT51 [FIRMICUTES] (CP001911) circular 51,488 35.0 70 69 - - - 1 genome Bacillus thuringiensis chinensis CT-43 plasmid pCT72 [FIRMICUTES] (CP001913) circular 72,074 32.0 84 84 - - - - genome Bacillus thuringiensis chinensis CT-43 plasmid pCT8252 [FIRMICUTES] (CP001914) circular 8,252 32.4 10 10 - - - - genome Bacillus thuringiensis chinensis CT-43 plasmid pCT83 [FIRMICUTES] (CP001915) circular 83,590 33.2 93 86 - - - 7 genome Bacillus thuringiensis chinensis CT-43 plasmid pCT8513 [FIRMICUTES] (CP001916) circular 8,513 30.8 9 9 - - - - genome Bacillus thuringiensis chinensis CT-43 plasmid pCT8547 [FIRMICUTES] (CP001917) circular 9,547 33.1 7 6 - - - 1 genome Bacillus thuringiensis HD-771 chromosome [FIRMICUTES] (CP003752) circular 5,886,036 35.2 6,001 5,744 36 98 - 124 genome Bacillus thuringiensis HD-771 plasmid p01e [FIRMICUTES] (CP003753) circular 171,030 33.0 163 163 - - - - genome Bacillus thuringiensis HD-771 plasmid p02e [FIRMICUTES] (CP003754) circular 168,999 33.2 161 158 - - - 3 genome Bacillus thuringiensis HD-771 plasmid p03 [FIRMICUTES] (CP003755) circular 69,876 34.3 78 74 - - - 4 genome Bacillus thuringiensis HD-771 plasmid p04 [FIRMICUTES] (CP003756) circular 65,470 32.0 73 72 - - - 1 genome Bacillus thuringiensis HD-771 plasmid p05 [FIRMICUTES] (CP003757) circular 45,262 36.0 57 54 - 1 - 2 genome Bacillus thuringiensis HD-771 plasmid p06 [FIRMICUTES] (CP003758) circular 14,056 35.2 14 14 - - - - genome Bacillus thuringiensis INTA-FR7-4 plasmid pFR12 [FIRMICUTES] (EU362917) circular 12,095 31.2 11 11 - - - - plasmid Bacillus thuringiensis INTA-FR7-4 plasmid pFR55 [FIRMICUTES] (EU362919) circular 55,712 33.7 69 69 - - - - plasmid Bacillus thuringiensis MC28 chromosome [FIRMICUTES] (CP003687) circular 5,414,494 35.4 5,463 5,261 45 73 - 84 genome Bacillus thuringiensis MC28 plasmid pMC183 [FIRMICUTES] (CP003691) circular 183,210 32.8 199 192 - - - 7 genome Bacillus thuringiensis MC28 plasmid pMC189 [FIRMICUTES] (CP003692) circular 189,702 33.4 159 135 - 1 - 23 genome Bacillus thuringiensis MC28 plasmid pMC319 [FIRMICUTES] (CP003693) circular 319,710 32.5 268 254 - - - 14 genome Bacillus thuringiensis MC28 plasmid pMC429 [FIRMICUTES] (CP003694) circular 429,674 32.6 377 349 - - - 28 genome Bacillus thuringiensis MC28 plasmid pMC54 [FIRMICUTES] (CP003689) circular 54,484 34.7 71 70 - 1 - - genome Bacillus thuringiensis MC28 plasmid pMC8 [FIRMICUTES] (CP003688) circular 7,826 32.1 7 7 - - - - genome Bacillus thuringiensis MC28 plasmid pMC95 [FIRMICUTES] (CP003690) circular 95,433 34.0 91 87 - - - 4 genome Bacillus thuringiensis sv. Cameroun H32 plasmid pBMB2062-32 [FIRMICUTES] (DQ185142) circular 2,062 34.8 2 2 - - - - plasmid Bacillus thuringiensis sv. canadensis H4ac plasmid pBMB2062-4ac [FIRMICUTES] (DQ185143) circular 2,061 34.8 2 2 - - - - plasmid Bacillus thuringiensis sv. darmstadiensis INTA 14-4 plasmid pBMBt1 [FIRMICUTES] (AY822042) circular 6,700 32.4 3 3 - - - - plasmid Bacillus thuringiensis sv. entomocidus LBIT-113 plasmid pUIBI-1 [FIRMICUTES] (AF516904) circular 4,671 32.2 4 4 - - - - plasmid Bacillus thuringiensis sv. finitimus YBT-020 chromosome [FIRMICUTES] (CP002508) circular 5,355,490 35.5 5,544 5,312 42 105 - 85 genome Bacillus thuringiensis sv. finitimus YBT-020 plasmid pBMB26 [FIRMICUTES] (CP002509) circular 187,880 33.1 184 171 - 1 - 12 genome Bacillus thuringiensis sv. finitimus YBT-020 plasmid pBMB28 [FIRMICUTES] (CP002510) circular 139,013 33.9 136 122 - 1 - 13 genome Bacillus thuringiensis sv. israelensis plasmid pBtoxis [FIRMICUTES] (AL731825) circular 127,923 32.4 124 113 - - - 11 plasmid Bacillus thuringiensis sv. israelensis plasmid pTX14-1 [FIRMICUTES] (U67921) circular 5,415 36.3 3 3 - - - - plasmid Bacillus thuringiensis sv. konkukian 97-27 chromosome [FIRMICUTES] (AE017355) circular 5,237,682 35.4 5,263 5,117 41 105 - - genome Bacillus thuringiensis sv. konkukian 97-27 plasmid pBT9727 [FIRMICUTES] (CP000047) circular 77,112 32.6 80 80 - - - - genome Bacillus thuringiensis sv. kurstaki H-3a3b miniplasmid [FIRMICUTES] (S49203) circular 2,058 34.9 1 1 - - - - plasmid Bacillus thuringiensis sv. kurstaki HD73 plasmid pAW63 [FIRMICUTES] (DQ025752) circular 71,777 33.8 77 72 - - - 5 plasmid Bacillus thuringiensis sv. kurstaki YBT-1520 plasmid pBMB2062 [FIRMICUTES] (AF050161) circular 2,062 34.8 2 2 - - - - plasmid Bacillus thuringiensis sv. kurstaki YBT-1520 plasmid pBMB67 [FIRMICUTES] (DQ363750) circular 67,159 32.4 73 73 - - - - plasmid Bacillus thuringiensis sv. kurstaki YBT-1520 plasmid pBMB7635 [FIRMICUTES] (EU130936) circular 7,635 32.2 9 9 - - - - plasmid Bacillus thuringiensis sv. kurstaki YBT-1520 plasmid pBMB9741 [FIRMICUTES] (AF202532) circular 6,578 32.4 2 2 - - - - plasmid Bacillus thuringiensis sv. thuringiensis H1.1 plasmid pGI1 [FIRMICUTES] (AY138809) circular 8,254 32.4 5 5 - - - - plasmid Bacillus weihenstephanensis KBAB4 chromosome [FIRMICUTES] (CP000903) circular 5,262,775 35.6 5,284 5,059 42 108 1 74 genome Bacillus weihenstephanensis KBAB4 plasmid pBWB401 [FIRMICUTES] (CP000904) circular 417,054 33.7 318 303 - - - 15 genome Bacillus weihenstephanensis KBAB4 plasmid pBWB402 [FIRMICUTES] (CP000905) circular 75,107 33.3 67 61 - - - 6 genome Bacillus weihenstephanensis KBAB4 plasmid pBWB403 [FIRMICUTES] (CP000906) circular 64,977 43.4 82 82 - - - - genome Bacillus weihenstephanensis KBAB4 plasmid pBWB404 [FIRMICUTES] (CP000907) circular 52,830 35.4 60 60 - - - - genome Bacteroides fragilis 638R chromosome [BACTEROIDETES] (FQ312004) linear 5,373,121 43.4 4,393 4,227 18 72 1 75 genome Bacteroides fragilis NCTC 9343 chromosome [BACTEROIDETES] (CR626927) circular 5,205,140 43.2 4,257 4,122 19 72 1 43 genome Bacteroides fragilis NCTC 9343 plasmid pBF9343 [BACTEROIDETES] (CR626928) circular 36,560 32.2 49 48 - - - 1 genome Bacteroides fragilis plasmid pBFP35 [BACTEROIDETES] (DQ859906) circular 5,594 39.6 8 8 - - - - plasmid Bacteroides fragilis plasmid pBI143 [BACTEROIDETES] (U30316) circular 2,747 41.2 2 2 - - - - plasmid Bacteroides fragilis YCH46 chromosome [BACTEROIDETES] (AP006841) circular 5,277,274 43.3 4,670 4,578 18 74 - - genome Bacteroides fragilis YCH46 plasmid pBFY46 [BACTEROIDETES] (AP006842) circular 33,716 33.5 47 47 - - - - genome

6 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Bacteroides helcogenes P 36-108 chromosome [BACTEROIDETES] (CP002352) circular 3,998,906 44.7 3,316 3,175 15 67 1 58 genome Bacteroides salanitronis DSM 18170 chromosome [BACTEROIDETES] (CP002530) circular 4,242,803 46.6 3,673 3,510 18 82 1 62 genome Bacteroides salanitronis DSM 18170 plasmid pBACSA01 [BACTEROIDETES] (CP002531) circular 40,303 32.4 54 53 - - - 1 genome Bacteroides salanitronis DSM 18170 plasmid pBACSA02 [BACTEROIDETES] (CP002532) circular 19,280 43.2 19 18 - - - 1 genome Bacteroides salanitronis DSM 18170 plasmid pBACSA03 [BACTEROIDETES] (CP002533) circular 6,277 40.3 8 8 - - - - genome Bacteroides thetaiotaomicron VPI-5482 chromosome [BACTEROIDETES] (AE015928) circular 6,260,361 42.8 4,864 4,778 15 71 - - genome Bacteroides thetaiotaomicron VPI-5482 plasmid p5482 [BACTEROIDETES] (AY171301) circular 33,038 47.2 38 38 - - - - genome Bacteroides vulgatus ATCC 8482 chromosome [BACTEROIDETES] (CP000139) circular 5,163,189 42.2 4,198 3,995 22 83 1 97 genome Bartonella bacilliformis KC583 chromosome [PROTEOBACTERIA] (CP000524) circular 1,445,021 38.2 1,266 1,183 6 44 2 31 genome Bartonella clarridgeiae 73 chromosome [PROTEOBACTERIA] (FN645454) circular 1,522,743 35.7 1,275 1,184 6 41 3 41 genome Bartonella grahamii as4aup chromosome [PROTEOBACTERIA] (CP001562) circular 2,341,328 38.1 1,972 1,824 6 42 2 98 genome Bartonella grahamii as4aup plasmid pBGR3 [PROTEOBACTERIA] (CP001563) circular 28,192 36.4 31 31 - - - - genome Bartonella grahamii plasmid pBGR1 [PROTEOBACTERIA] (AJ422079) circular 2,725 40.6 2 2 - - - - plasmid Bartonella grahamii plasmid pBGR2 [PROTEOBACTERIA] (AJ439506) circular 2,723 40.5 2 2 - - - - plasmid Bartonella henselae Houston-1 chromosome [PROTEOBACTERIA] (BX897699) circular 1,931,047 38.2 1,665 1,525 7 43 3 87 genome Bartonella quintana RM-11 chromosome [PROTEOBACTERIA] (CP003784) circular 1,587,646 38.8 1,353 1,211 6 42 1 93 genome Bartonella quintana Toulouse chromosome [PROTEOBACTERIA] (BX897700) circular 1,581,384 38.8 1,349 1,224 6 42 2 75 genome Bartonella tribocorum CIP 105476 chromosome [PROTEOBACTERIA] (AM260525) circular 2,619,061 38.9 2,351 2,195 6 42 1 107 genome Bartonella tribocorum CIP 105476 plasmid pBT01 [PROTEOBACTERIA] (AM260524) circular 23,343 35.0 18 17 - - - 1 genome Bartonella tribocorum plasmid pKM19s [PROTEOBACTERIA] (EU595645) circular 3,321 38.4 3 3 - - - - plasmid Bdellovibrio bacteriovorus HD100 chromosome [PROTEOBACTERIA] (BX842601) circular 3,782,950 50.6 3,582 3,534 6 36 1 5 genome Beet leafhopper transmitted virescence phytoplasma plasmid pBLTVA-1 [TENERICUTES] (AY423627) circular 10,785 24.8 11 11 - - - - plasmid Beijerinckia indica indica ATCC 9039 chromosome [PROTEOBACTERIA] (CP001016) circular 4,170,153 57.1 3,737 3,570 9 51 2 105 genome Beijerinckia indica indica ATCC 9039 plasmid pBIND01 [PROTEOBACTERIA] (CP001017) circular 181,736 56.2 192 178 - - - 14 genome Beijerinckia indica indica ATCC 9039 plasmid pBIND02 [PROTEOBACTERIA] (CP001018) circular 66,727 54.3 43 40 - - - 3 genome Belliella baltica DSM 15883 chromosome [BACTEROIDETES] (CP003281) circular 4,196,595 36.8 3,791 3,654 12 39 2 84 genome Beutenbergia cavernae DSM 12333 chromosome [ACTINOBACTERIA] (CP001618) circular 4,669,183 73.1 4,237 4,094 6 45 1 91 genome Bhargavaea cecembensis plasmid pBSDMV9 [FIRMICUTES] (HQ833018) circular 5,108 37.0 4 4 - - - - plasmid Bibersteinia trehalosi plasmid pCCK13698 [PROTEOBACTERIA] (AM183225) circular 14,969 45.4 15 15 - - - - plasmid Bifidobacterium adolescentis ATCC 15703 chromosome [ACTINOBACTERIA] (AP009256) circular 2,089,645 59.2 1,720 1,613 16 54 1 35 genome Bifidobacterium animalis animalis ATCC 25527 chromosome [ACTINOBACTERIA] (CP002567) circular 1,932,693 60.5 1,586 1,478 11 52 1 44 genome Bifidobacterium animalis lactis AD011 chromosome [ACTINOBACTERIA] (CP001213) circular 1,933,695 60.5 1,614 1,518 7 52 1 36 genome Bifidobacterium animalis lactis B420 chromosome [ACTINOBACTERIA] (CP003497) circular 1,938,595 60.5 1,613 1,538 12 52 1 10 genome Bifidobacterium animalis lactis BB-12 chromosome [ACTINOBACTERIA] (CP001853) circular 1,942,198 60.5 1,614 1,528 12 52 1 21 genome Bifidobacterium animalis lactis Bi-07 chromosome [ACTINOBACTERIA] (CP003498) circular 1,938,822 60.5 1,611 1,538 12 52 1 8 genome Bifidobacterium animalis lactis Bl-04 chromosome [ACTINOBACTERIA] (CP001515) circular 1,938,709 60.5 1,611 1,538 12 52 1 8 genome Bifidobacterium animalis lactis BLC1 chromosome [ACTINOBACTERIA] (CP003039) circular 1,938,583 60.5 1,611 1,539 12 52 1 7 genome Bifidobacterium animalis lactis CNCM I-2494 chromosome [ACTINOBACTERIA] (CP002915) circular 1,943,113 60.5 1,614 1,539 12 52 1 10 genome Bifidobacterium animalis lactis DSM 10140 chromosome [ACTINOBACTERIA] (CP001606) circular 1,938,483 60.5 1,610 1,534 12 51 1 12 genome Bifidobacterium animalis lactis V9 chromosome [ACTINOBACTERIA] (CP001892) circular 1,944,050 60.5 1,613 1,541 12 52 1 7 genome Bifidobacterium asteroides plasmid pCIBAO89 [ACTINOBACTERIA] (EU030683) circular 2,111 52.3 1 1 - - - - plasmid Bifidobacterium asteroides PRL2011 chromosome [ACTINOBACTERIA] (CP003325) circular 2,167,304 60.1 1,726 1,627 6 45 1 47 genome Bifidobacterium bifidum BGN4 chromosome [ACTINOBACTERIA] (CP001361) circular 2,223,664 62.6 1,827 1,715 9 52 1 50 genome Bifidobacterium bifidum plasmid pB80 [ACTINOBACTERIA] (DQ305402) circular 4,898 61.9 3 3 - - - - plasmid Bifidobacterium bifidum PRL2010 chromosome [ACTINOBACTERIA] (CP001840) circular 2,214,656 62.7 1,791 1,706 9 52 - 24 genome Bifidobacterium bifidum S17 chromosome [ACTINOBACTERIA] (CP002220) circular 2,186,882 62.8 1,809 1,695 8 53 1 52 genome Bifidobacterium breve ACS-071-V-Sch8b chromosome [ACTINOBACTERIA] (CP002743) circular 2,327,492 58.7 1,947 1,831 9 53 2 52 genome Bifidobacterium breve plasmid pB21a [ACTINOBACTERIA] (DQ497626) circular 5,206 56.3 5 5 - - - - plasmid Bifidobacterium breve plasmid pCIBb1 [ACTINOBACTERIA] (AF085719) circular 5,750 56.9 3 3 - - - - plasmid Bifidobacterium catenulatum plasmid pBC1 [ACTINOBACTERIA] (DQ011664) circular 2,540 63.7 3 3 - - - - plasmid Bifidobacterium dentium Bd1 chromosome [ACTINOBACTERIA] (CP001750) circular 2,636,367 58.5 2,177 2,091 13 56 1 16 genome Bifidobacterium longum DJO10A chromosome [ACTINOBACTERIA] (CP000605) circular 2,375,792 60.1 1,998 1,903 12 58 1 24 genome Bifidobacterium longum DJO10A pDOJH10L [ACTINOBACTERIA] (AF538868) circular 10,073 62.2 10 9 - - - 1 genome Bifidobacterium longum DJO10A pDOJH10S [ACTINOBACTERIA] (AF538869) circular 3,661 66.2 4 4 - - - - genome Bifidobacterium longum infantis 157F chromosome [ACTINOBACTERIA] (AP010890) circular 2,400,312 60.1 2,037 1,929 12 59 1 36 genome Bifidobacterium longum infantis 157F plasmid p157F-NC1 [ACTINOBACTERIA] (AP010891) circular 4,895 61.9 5 5 - - - - genome Bifidobacterium longum infantis 157F plasmid p157F-NC2 [ACTINOBACTERIA] (AP010892) circular 3,624 65.0 3 3 - - - - genome Bifidobacterium longum infantis ATCC 15697 = JCM 1222 chromosome [ACTINOBACTERIA] (AP010889) circular 2,828,958 59.9 2,588 2,425 12 77 1 73 genome Bifidobacterium longum infantis ATCC 15697 = JCM 1222 chromosome [ACTINOBACTERIA] (CP001095) circular 2,832,748 59.9 2,589 2,425 12 77 2 73 genome Bifidobacterium longum longum BBMN68 chromosome [ACTINOBACTERIA] (CP002286) circular 2,265,943 59.9 1,871 1,773 9 54 1 34 genome Bifidobacterium longum longum JCM 1217 chromosome [ACTINOBACTERIA] (AP010888) circular 2,385,164 60.3 1,999 1,876 12 73 1 37 genome Bifidobacterium longum longum JDM301 chromosome [ACTINOBACTERIA] (CP002010) circular 2,477,838 59.8 2,060 1,928 9 55 1 67 genome Bifidobacterium longum longum KACC 91563 chromosome [ACTINOBACTERIA] (CP002794) circular 2,385,301 59.8 1,977 1,874 9 56 1 37 genome Bifidobacterium longum longum KACC 91563 plasmid BLNIAS_P1 [ACTINOBACTERIA] (CP002795) circular 4,233 64.4 3 1 - - - 2 genome Bifidobacterium longum longum KACC 91563 plasmid BLNIAS_P2 [ACTINOBACTERIA] (CP002796) circular 6,230 61.1 5 2 - - - 3 genome Bifidobacterium longum NCC2705 chromosome [ACTINOBACTERIA] (AE014295) circular 2,256,640 60.1 1,797 1,726 12 57 1 - genome Bifidobacterium longum NCC2705 pBLO1 [ACTINOBACTERIA] (AF540971) circular 3,626 64.8 2 2 - - - - genome Bifidobacterium longum plasmid p6043A [ACTINOBACTERIA] (DQ458910) circular 4,896 61.8 3 3 - - - - plasmid Bifidobacterium longum plasmid p6043B [ACTINOBACTERIA] (DQ458911) circular 3,680 65.1 2 2 - - - - plasmid Bifidobacterium longum plasmid pB44 [ACTINOBACTERIA] (AY066026) circular 3,624 65.1 2 2 - - - - plasmid Bifidobacterium longum plasmid pFI2576 [ACTINOBACTERIA] (DQ452864) circular 2,197 61.9 4 4 - - - - plasmid Bifidobacterium longum plasmid pKJ36 [ACTINOBACTERIA] (AF139129) circular 3,625 65.1 3 3 - - - - plasmid Bifidobacterium longum plasmid pKJ50 [ACTINOBACTERIA] (U76614) circular 4,960 61.8 3 3 - - - - plasmid Bifidobacterium longum plasmid pMG1 [ACTINOBACTERIA] (AY210701) circular 3,682 65.1 2 2 - - - - plasmid Bifidobacterium longum plasmid pNAC1 [ACTINOBACTERIA] (AY112724) circular 3,538 58.8 4 4 - - - - plasmid Bifidobacterium longum plasmid PNAC2 [ACTINOBACTERIA] (AY112723) circular 3,684 64.7 3 3 - - - - plasmid Bifidobacterium longum plasmid pNAC3 [ACTINOBACTERIA] (AY112722) circular 10,224 62.0 8 8 - - - - plasmid Bifidobacterium longum plasmid pTB6 [ACTINOBACTERIA] (AB187597) circular 3,624 65.1 4 4 - - - - plasmid Bifidobacterium pseudocatenulatum plasmid p4M [ACTINOBACTERIA] (AF359574) circular 4,488 53.1 2 2 - - - - plasmid Bifidobacterium pseudolongum globosum plasmid pASV479 [ACTINOBACTERIA] (DQ103758) circular 4,815 59.3 6 6 - - - - plasmid Bifidobacterium sp. A24 plasmid pBIFA24 [ACTINOBACTERIA] (DQ286581) circular 4,892 61.8 3 3 - - - - plasmid Blastococcus saxobsidens DD2 chromosome [ACTINOBACTERIA] (FO117623) circular 4,875,340 72.9 4,622 4,469 9 47 11 86 genome Blattabacterium sp. (Blaberus giganteus) chromosome [BACTEROIDETES] (CP003535) circular 629,165 25.7 610 569 3 33 1 4 genome Blattabacterium sp. (Blattella germanica) Bge chromosome [BACTEROIDETES] (CP001487) circular 636,850 27.1 618 560 3 34 2 19 genome Blattabacterium sp. (Cryptocercus punctulatus) Cpu chromosome [BACTEROIDETES] (CP003015) circular 605,745 23.8 581 531 3 32 2 13 genome Blattabacterium sp. (Mastotermes darwiniensis) MADAR chromosome [BACTEROIDETES] (CP003000) circular 587,248 27.5 584 532 3 34 3 12 genome Blattabacterium sp. (Periplaneta americana) BPLAN chromosome [BACTEROIDETES] (CP001429) circular 636,994 28.2 627 576 3 34 2 12 genome

7 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Bordetella avium 197N chromosome [PROTEOBACTERIA] (AM167904) circular 3,732,255 61.6 3,404 3,284 9 61 1 49 genome Bordetella bronchiseptica 253 chromosome [PROTEOBACTERIA] (HE965806) circular 5,264,383 68.1 4,842 4,781 9 54 2 60 genome Bordetella bronchiseptica MO149 chromosome [PROTEOBACTERIA] (HE965807) circular 5,091,817 68.4 4,739 4,658 9 54 2 16 genome Bordetella bronchiseptica RB50 chromosome [PROTEOBACTERIA] (BX470250) circular 5,339,179 68.1 5,032 4,950 9 56 1 16 genome Bordetella parapertussis 12822 chromosome [PROTEOBACTERIA] (BX470249) circular 4,773,551 67.8 4,559 4,169 9 54 2 389 genome Bordetella parapertussis Bpp5 chromosome [PROTEOBACTERIA] (HE965803) circular 4,887,379 67.8 4,559 4,169 9 54 2 389 genome Bordetella parapertussis Bpp5 plasmid BPP5P1 [PROTEOBACTERIA] (HE965804) circular 12,195 59.7 15 15 - - - - genome Bordetella pertussis 18323 chromosome [PROTEOBACTERIA] (HE965805) circular 4,043,846 67.7 3,849 3,541 9 51 2 246 genome Bordetella pertussis CS chromosome [PROTEOBACTERIA] (CP002695) circular 4,124,236 67.7 3,933 3,647 9 51 1 225 genome Bordetella pertussis plasmid pBP136 [PROTEOBACTERIA] (AB237782) circular 41,268 65.1 46 46 - - - - plasmid Bordetella pertussis Tohama I chromosome [PROTEOBACTERIA] (BX470248) circular 4,086,189 67.7 3,856 3,425 9 51 2 362 genome Bordetella petrii DSM 12804 chromosome [PROTEOBACTERIA] (AM902716) circular 5,287,950 65.5 5,062 4,914 9 51 1 87 genome Borrelia crocidurae Achema chromosome [SPIROCHAETAE] (CP003426) linear 919,477 27.6 853 758 3 32 1 59 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003427) linear 18,092 32.0 16 11 - - - 5 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003430) linear 5,135 24.2 6 6 - - - - genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003435) linear 173,158 28.5 149 142 - - - 7 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003438) linear 15,552 31.8 10 6 - - - 4 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003441) linear 11,572 34.6 12 8 - - - 4 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003443) linear 10,942 31.7 9 7 - - - 2 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003449) linear 40,912 33.5 33 21 - - - 12 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003451) linear 28,620 33.4 24 15 - - - 9 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003453) linear 23,530 27.1 23 20 - - - 3 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003454) linear 18,431 34.3 15 13 - - - 2 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003458) linear 50,097 34.4 39 28 - - - 11 genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003460) linear 3,194 23.9 4 4 - - - - genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003461) linear 3,137 25.0 4 4 - - - - genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003463) linear 2,348 23.2 3 3 - - - - genome Borrelia crocidurae Achema plasmid unnamed [SPIROCHAETAE] (CP003464) linear 2,317 23.2 3 2 - - - 1 genome Borrelia crocidurae Achema plasmid unnamed11 [SPIROCHAETAE] (CP003437) linear 9,717 29.4 10 7 - - - 3 genome Borrelia crocidurae Achema plasmid unnamed19 [SPIROCHAETAE] (CP003445) linear 4,031 28.9 4 3 - - - 1 genome Borrelia crocidurae Achema plasmid unnamed24 [SPIROCHAETAE] (CP003450) linear 36,478 35.5 30 19 - - - 11 genome Borrelia crocidurae Achema plasmid unnamed26 [SPIROCHAETAE] (CP003452) linear 25,137 30.9 18 15 - - - 3 genome Borrelia crocidurae Achema plasmid unnamed29 [SPIROCHAETAE] (CP003455) linear 2,091 22.6 3 3 - - - - genome Borrelia crocidurae Achema plasmid unnamed33 [SPIROCHAETAE] (CP003459) linear 3,204 23.6 4 3 - - - 1 genome Borrelia crocidurae Achema plasmid unnamed36 [SPIROCHAETAE] (CP003462) linear 2,469 24.4 3 3 - - - - genome Borrelia crocidurae Achema plasmid unnamed39 [SPIROCHAETAE] (CP003465) linear 17,493 33.0 17 12 - - - 5 genome Borrelia crocidurae Achema plasmid unnamed8 [SPIROCHAETAE] (CP003434) linear 4,141 31.7 4 3 - - - 1 genome Borrelia duttonii Ly chromosome [SPIROCHAETAE] (CP000976) linear 931,674 27.6 857 817 3 32 1 4 genome Borrelia duttonii Ly plasmid pl15 [SPIROCHAETAE] (CP000978) linear 15,049 28.1 14 12 - - - 2 genome Borrelia duttonii Ly plasmid pl165 [SPIROCHAETAE] (CP000979) linear 163,884 26.6 147 140 - - - 7 genome Borrelia duttonii Ly plasmid pl23 [SPIROCHAETAE] (CP000980) linear 23,303 26.4 24 21 - - - 3 genome Borrelia duttonii Ly plasmid pl23b [SPIROCHAETAE] (CP000981) linear 23,036 29.0 16 14 - - - 2 genome Borrelia duttonii Ly plasmid pl26 [SPIROCHAETAE] (CP000982) linear 26,917 28.9 37 37 - - - - genome Borrelia duttonii Ly plasmid pl27 [SPIROCHAETAE] (CP000983) circular 27,476 28.5 38 36 - - - 2 genome Borrelia duttonii Ly plasmid pl28 [SPIROCHAETAE] (CP000984) linear 28,343 28.9 38 38 - - - - genome Borrelia duttonii Ly plasmid pl31 [SPIROCHAETAE] (CP000991) linear 31,021 27.8 39 26 - - - 13 genome Borrelia duttonii Ly plasmid pl32 [SPIROCHAETAE] (CP000992) linear 31,663 30.2 30 25 - - - 5 genome Borrelia duttonii Ly plasmid pl35 [SPIROCHAETAE] (CP000985) linear 35,286 31.6 32 24 - - - 8 genome Borrelia duttonii Ly plasmid pl36 [SPIROCHAETAE] (CP000986) linear 35,831 29.5 27 21 - - - 6 genome Borrelia duttonii Ly plasmid pl40 [SPIROCHAETAE] (CP000987) linear 40,353 29.9 38 26 - - - 12 genome Borrelia duttonii Ly plasmid pl41 [SPIROCHAETAE] (CP000988) linear 41,259 29.4 45 38 - - - 7 genome Borrelia duttonii Ly plasmid pl42 [SPIROCHAETAE] (CP000989) linear 42,153 30.2 40 31 - - - 9 genome Borrelia duttonii Ly plasmid pl70 [SPIROCHAETAE] (CP000990) linear 66,407 30.2 62 53 - - - 9 genome Borrelia hermsii DAH (HS1) chromosome [SPIROCHAETAE] (CP000048) linear 922,307 29.8 857 816 3 32 1 5 genome Borrelia recurrentis A1 chromosome [SPIROCHAETAE] (CP000993) linear 930,981 27.5 863 805 3 32 1 22 genome Borrelia recurrentis A1 plasmid pl124 [SPIROCHAETAE] (CP000994) linear 123,937 26.1 115 94 - - - 21 genome Borrelia recurrentis A1 plasmid pl23 [SPIROCHAETAE] (CP000995) linear 22,945 25.7 20 16 - - - 4 genome Borrelia recurrentis A1 plasmid pl33 [SPIROCHAETAE] (CP000996) linear 33,213 29.5 32 23 - - - 9 genome Borrelia recurrentis A1 plasmid pl35 [SPIROCHAETAE] (CP000997) linear 35,315 27.3 37 25 - - - 12 genome Borrelia recurrentis A1 plasmid pl37 [SPIROCHAETAE] (CP000998) linear 36,869 29.4 35 26 - - - 9 genome Borrelia recurrentis A1 plasmid pl53 [SPIROCHAETAE] (CP000999) linear 52,772 29.0 58 44 - - - 14 genome Borrelia recurrentis A1 plasmid pl6 [SPIROCHAETAE] (CP001000) linear 6,131 30.9 8 8 - - - - genome Borrelia turicatae 91E135 chromosome [SPIROCHAETAE] (CP000049) linear 917,330 29.1 856 816 3 32 1 4 genome Borreliella afzelii ACA-1 plasmid cp26 [SPIROCHAETAE] (CP001250) circular 26,535 25.8 26 26 - - - - plasmid Borreliella afzelii ACA-1 plasmid cp32-1 [SPIROCHAETAE] (CP001243) circular 31,475 29.2 43 43 - - - - plasmid Borreliella afzelii ACA-1 plasmid cp32-3 [SPIROCHAETAE] (CP001237) circular 31,017 28.9 42 42 - - - - plasmid Borreliella afzelii ACA-1 plasmid cp32-4 [SPIROCHAETAE] (CP001240) circular 30,810 28.8 41 41 - - - - plasmid Borreliella afzelii ACA-1 plasmid cp32-5 [SPIROCHAETAE] (CP001248) circular 31,157 29.1 43 43 - - - - plasmid Borreliella afzelii ACA-1 plasmid lp17 [SPIROCHAETAE] (CP001239) linear 26,020 23.7 27 24 - - - 3 plasmid Borreliella afzelii ACA-1 plasmid lp28-1 [SPIROCHAETAE] (CP001238) linear 28,763 31.9 33 33 - - - - plasmid Borreliella afzelii ACA-1 plasmid lp28-2 [SPIROCHAETAE] (CP001244) linear 32,041 26.8 31 20 - - - 11 plasmid Borreliella afzelii ACA-1 plasmid lp28-3 [SPIROCHAETAE] (CP001241) linear 23,261 24.3 17 17 - - - - plasmid Borreliella afzelii ACA-1 plasmid lp28-4 [SPIROCHAETAE] (CP001249) linear 30,270 24.2 24 20 - - - 4 plasmid Borreliella afzelii ACA-1 plasmid lp28-7 [SPIROCHAETAE] (CP001242) linear 33,405 31.0 37 36 - - - 1 plasmid Borreliella afzelii ACA-1 plasmid lp32-10 [SPIROCHAETAE] (CP001245) linear 31,266 25.6 33 25 - - - 8 plasmid Borreliella afzelii ACA-1 plasmid lp38 [SPIROCHAETAE] (CP001246) linear 33,534 23.3 30 28 - - - 2 plasmid Borreliella afzelii ACA-1 plasmid lp54 [SPIROCHAETAE] (CP001247) linear 60,749 27.0 72 72 - - - - plasmid Borreliella afzelii HLJ01 chromosome [SPIROCHAETAE] (CP003882) linear 905,471 28.3 850 730 6 32 1 81 genome Borreliella afzelii PKo chromosome [SPIROCHAETAE] (CP000395) linear 905,394 28.3 851 807 6 32 1 5 genome Borreliella afzelii PKo chromosome [SPIROCHAETAE] (CP002933) linear 903,609 28.3 849 807 6 32 1 3 genome Borreliella afzelii PKo plasmid cp26 [SPIROCHAETAE] (CP002934) circular 26,539 25.9 26 26 - - - - genome Borreliella afzelii PKo plasmid cp32-1 [SPIROCHAETAE] (CP002937) circular 30,000 29.2 41 41 - - - - genome Borreliella afzelii PKo plasmid cp32-11 [SPIROCHAETAE] (CP002935) circular 30,718 28.8 42 40 - - - 2 genome Borreliella afzelii PKo plasmid cp32-12 [SPIROCHAETAE] (CP002936) circular 30,065 29.2 41 41 - - - - genome Borreliella afzelii PKo plasmid cp32-3 [SPIROCHAETAE] (CP002938) circular 31,118 29.3 42 42 - - - - genome Borreliella afzelii PKo plasmid cp32-5 [SPIROCHAETAE] (CP002939) circular 30,949 29.2 42 42 - - - - genome Borreliella afzelii PKo plasmid cp32-7 [SPIROCHAETAE] (CP002940) circular 25,262 28.5 34 31 - - - 3 genome

8 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Borreliella afzelii PKo plasmid cp32-9 [SPIROCHAETAE] (CP002941) circular 29,421 29.2 40 38 - - - 2 genome Borreliella afzelii PKo plasmid lp17 [SPIROCHAETAE] (CP002942) linear 24,675 24.0 23 23 - - - - genome Borreliella afzelii PKo plasmid lp28-2 [SPIROCHAETAE] (CP002943) linear 26,626 24.2 25 18 - - - 7 genome Borreliella afzelii PKo plasmid lp28-3 [SPIROCHAETAE] (CP002944) linear 22,901 24.4 20 20 - - - - genome Borreliella afzelii PKo plasmid lp28-4 [SPIROCHAETAE] (CP002945) linear 22,449 23.4 13 13 - - - - genome Borreliella afzelii PKo plasmid lp28-7 [SPIROCHAETAE] (CP002946) linear 27,239 30.9 29 27 - - - 2 genome Borreliella afzelii PKo plasmid lp28-8 [SPIROCHAETAE] (CP002947) linear 20,715 29.6 19 19 - - - - genome Borreliella afzelii PKo plasmid lp32-10 [SPIROCHAETAE] (CP002948) linear 30,180 24.8 36 31 - - - 5 genome Borreliella afzelii PKo plasmid lp38 [SPIROCHAETAE] (CP002949) linear 33,903 23.5 29 29 - - - - genome Borreliella afzelii PKo plasmid lp54 [SPIROCHAETAE] (CP002950) linear 57,919 27.0 69 69 - - - - genome Borreliella afzelii PKo plasmid pcp27 [SPIROCHAETAE] (CP000402) circular 26,533 25.9 26 26 - - - - genome Borreliella afzelii PKo plasmid pcp30 [SPIROCHAETAE] (CP000400) circular 30,017 29.2 41 34 - - - 7 genome Borreliella afzelii PKo plasmid plp25 [SPIROCHAETAE] (CP000403) linear 24,794 31.4 26 22 - - - 4 genome Borreliella afzelii PKo plasmid plp28 [SPIROCHAETAE] (CP000401) linear 28,533 25.1 27 26 - - - 1 genome Borreliella afzelii PKo plasmid plp32 [SPIROCHAETAE] (CP000399) linear 32,368 24.7 38 35 - - - 3 genome Borreliella afzelii PKo plasmid plp34 [SPIROCHAETAE] (CP000398) linear 34,273 23.6 30 29 - - - 1 genome Borreliella afzelii PKo plasmid plp60 [SPIROCHAETAE] (CP000396) linear 59,958 26.9 71 71 - - - - genome Borreliella afzelii PKo plasmid plp60-2 [SPIROCHAETAE] (CP000397) linear 59,804 24.4 50 42 - - - 8 genome Borreliella bissettii DN127 chromosome [SPIROCHAETAE] (CP002746) linear 900,755 28.7 845 805 5 32 1 2 genome Borreliella bissettii DN127 plasmid cp26 [SPIROCHAETAE] (CP002747) circular 26,473 26.4 27 27 - - - - genome Borreliella bissettii DN127 plasmid cp32-11 [SPIROCHAETAE] (CP002748) circular 30,294 29.5 41 36 - - - 5 genome Borreliella bissettii DN127 plasmid cp32-3 [SPIROCHAETAE] (CP002749) circular 30,547 28.8 42 41 - - - 1 genome Borreliella bissettii DN127 plasmid cp32-4 [SPIROCHAETAE] (CP002750) circular 30,529 29.2 42 42 - - - - genome Borreliella bissettii DN127 plasmid cp32-5 [SPIROCHAETAE] (CP002751) circular 29,936 29.5 41 40 - - - 1 genome Borreliella bissettii DN127 plasmid cp32-6 [SPIROCHAETAE] (CP002752) circular 30,092 29.3 40 36 - - - 4 genome Borreliella bissettii DN127 plasmid cp32-7 [SPIROCHAETAE] (CP002753) circular 30,767 29.0 43 41 - - - 2 genome Borreliella bissettii DN127 plasmid cp32-quade [SPIROCHAETAE] (CP002754) circular 66,242 27.5 89 58 - - - 31 genome Borreliella bissettii DN127 plasmid cp9 [SPIROCHAETAE] (CP002755) circular 10,209 24.4 12 12 - - - - genome Borreliella bissettii DN127 plasmid lp17 [SPIROCHAETAE] (CP002756) linear 27,137 24.6 25 23 - - - 2 genome Borreliella bissettii DN127 plasmid lp25 [SPIROCHAETAE] (CP002757) linear 23,029 23.6 15 14 - - - 1 genome Borreliella bissettii DN127 plasmid lp28-3 [SPIROCHAETAE] (CP002758) linear 24,945 24.0 18 13 - - - 5 genome Borreliella bissettii DN127 plasmid lp28-4 [SPIROCHAETAE] (CP002759) linear 27,319 24.8 22 14 - - - 8 genome Borreliella bissettii DN127 plasmid lp28-7 [SPIROCHAETAE] (CP002760) linear 30,502 27.5 31 22 - - - 9 genome Borreliella bissettii DN127 plasmid lp54 [SPIROCHAETAE] (CP002761) linear 55,219 28.3 63 62 - - - 1 genome Borreliella bissettii DN127 plasmid lp56 [SPIROCHAETAE] (CP002762) linear 29,448 31.5 32 32 - - - - genome Borreliella burgdorferi 118a plasmid cp26 [SPIROCHAETAE] (CP001535) circular 26,526 26.3 26 26 - - - - plasmid Borreliella burgdorferi 118a plasmid cp32-10 [SPIROCHAETAE] (CP001534) circular 30,341 29.3 42 39 - - - 3 plasmid Borreliella burgdorferi 118a plasmid cp32-13 [SPIROCHAETAE] (CP001543) circular 30,117 29.2 41 41 - - - - plasmid Borreliella burgdorferi 118a plasmid cp32-4 [SPIROCHAETAE] (CP001538) circular 30,171 29.0 42 41 - - - 1 plasmid Borreliella burgdorferi 118a plasmid cp32-5 [SPIROCHAETAE] (CP001536) circular 17,070 27.1 24 21 - - - 3 plasmid Borreliella burgdorferi 118a plasmid cp32-6 [SPIROCHAETAE] (CP001528) circular 30,611 29.4 43 42 - - - 1 plasmid Borreliella burgdorferi 118a plasmid cp32-7-9 [SPIROCHAETAE] (CP001526) circular 60,942 28.9 85 83 - - - 2 plasmid Borreliella burgdorferi 118a plasmid cp32-8 [SPIROCHAETAE] (CP001525) circular 30,858 29.2 42 42 - - - - plasmid Borreliella burgdorferi 118a plasmid lp17 [SPIROCHAETAE] (CP001527) linear 18,209 23.8 17 16 - - - 1 plasmid Borreliella burgdorferi 118a plasmid lp25 [SPIROCHAETAE] (CP001532) linear 24,765 25.5 18 16 - - - 2 plasmid Borreliella burgdorferi 118a plasmid lp28-3 [SPIROCHAETAE] (CP001540) linear 28,746 25.1 25 25 - - - - plasmid Borreliella burgdorferi 118a plasmid lp28-4 [SPIROCHAETAE] (CP001541) linear 29,802 24.6 27 22 - - - 5 plasmid Borreliella burgdorferi 118a plasmid lp28-5 [SPIROCHAETAE] (CP001529) linear 27,336 25.3 20 20 - - - - plasmid Borreliella burgdorferi 118a plasmid lp28-6 [SPIROCHAETAE] (CP001531) linear 29,233 31.8 32 32 - - - - plasmid Borreliella burgdorferi 118a plasmid lp32-3 [SPIROCHAETAE] (CP001530) linear 17,205 30.0 23 14 - - - 9 plasmid Borreliella burgdorferi 118a plasmid lp36 [SPIROCHAETAE] (CP001537) linear 27,241 25.4 32 28 - - - 4 plasmid Borreliella burgdorferi 118a plasmid lp38 [SPIROCHAETAE] (CP001539) linear 27,759 25.4 20 17 - - - 3 plasmid Borreliella burgdorferi 118a plasmid lp54 [SPIROCHAETAE] (CP001542) linear 54,027 28.2 66 65 - - - 1 plasmid Borreliella burgdorferi 156a plasmid cp26 [SPIROCHAETAE] (CP001271) circular 26,522 26.2 27 27 - - - - plasmid Borreliella burgdorferi 156a plasmid cp32-1 [SPIROCHAETAE] (CP001261) circular 14,883 26.6 17 17 - - - - plasmid Borreliella burgdorferi 156a plasmid cp32-11 [SPIROCHAETAE] (CP001270) circular 30,439 29.0 42 41 - - - 1 plasmid Borreliella burgdorferi 156a plasmid cp32-12 [SPIROCHAETAE] (CP001266) circular 30,652 29.5 42 38 - - - 4 plasmid Borreliella burgdorferi 156a plasmid cp32-3 [SPIROCHAETAE] (CP001264) circular 30,280 28.8 42 42 - - - - plasmid Borreliella burgdorferi 156a plasmid cp32-4 [SPIROCHAETAE] (CP001263) circular 30,300 29.3 42 41 - - - 1 plasmid Borreliella burgdorferi 156a plasmid cp32-6 [SPIROCHAETAE] (CP001259) circular 30,293 29.1 41 41 - - - - plasmid Borreliella burgdorferi 156a plasmid cp32-7 [SPIROCHAETAE] (CP001268) circular 21,329 28.8 30 27 - - - 3 plasmid Borreliella burgdorferi 156a plasmid cp32-8 [SPIROCHAETAE] (CP001269) circular 30,946 29.0 42 42 - - - - plasmid Borreliella burgdorferi 156a plasmid lp17 [SPIROCHAETAE] (CP001258) linear 17,849 24.0 15 13 - - - 2 plasmid Borreliella burgdorferi 156a plasmid lp25 [SPIROCHAETAE] (CP001265) linear 24,910 25.4 17 14 - - - 3 plasmid Borreliella burgdorferi 156a plasmid lp28-1 [SPIROCHAETAE] (CP001273) linear 24,159 33.2 18 16 - - - 2 plasmid Borreliella burgdorferi 156a plasmid lp28-3 [SPIROCHAETAE] (CP001256) linear 28,770 25.0 26 24 - - - 2 plasmid Borreliella burgdorferi 156a plasmid lp28-4 [SPIROCHAETAE] (CP001272) linear 29,501 24.6 28 23 - - - 5 plasmid Borreliella burgdorferi 156a plasmid lp28-5 [SPIROCHAETAE] (CP001274) linear 27,342 25.3 20 20 - - - - plasmid Borreliella burgdorferi 156a plasmid lp28-6 [SPIROCHAETAE] (CP001262) linear 26,705 32.4 31 30 - - - 1 plasmid Borreliella burgdorferi 156a plasmid lp36 [SPIROCHAETAE] (CP001260) linear 23,638 25.4 24 19 - - - 5 plasmid Borreliella burgdorferi 156a plasmid lp38 [SPIROCHAETAE] (CP001267) linear 30,302 25.3 26 21 - - - 5 plasmid Borreliella burgdorferi 156a plasmid lp54 [SPIROCHAETAE] (CP001257) linear 53,885 28.1 65 64 - - - 1 plasmid Borreliella burgdorferi 297 plasmid 297_cp26 [SPIROCHAETAE] (CP002268) circular 26,514 26.2 26 26 - - - - plasmid Borreliella burgdorferi 297 plasmid 297_cp32-1 [SPIROCHAETAE] (CP002254) circular 30,902 29.2 42 42 - - - - plasmid Borreliella burgdorferi 297 plasmid 297_cp32-11 [SPIROCHAETAE] (CP002260) circular 30,286 28.9 42 42 - - - - plasmid Borreliella burgdorferi 297 plasmid 297_cp32-12 [SPIROCHAETAE] (CP002255) circular 30,795 29.3 42 42 - - - - plasmid Borreliella burgdorferi 297 plasmid 297_cp32-3 [SPIROCHAETAE] (CP002269) circular 30,262 28.8 42 42 - - - - plasmid Borreliella burgdorferi 297 plasmid 297_cp32-4 [SPIROCHAETAE] (CP002270) circular 30,301 29.2 42 41 - - - 1 plasmid Borreliella burgdorferi 297 plasmid 297_cp32-5 [SPIROCHAETAE] (CP002261) circular 30,636 29.2 42 42 - - - - plasmid Borreliella burgdorferi 297 plasmid 297_cp32-6 [SPIROCHAETAE] (CP002263) circular 30,641 29.1 42 42 - - - - plasmid Borreliella burgdorferi 297 plasmid 297_cp32-7 [SPIROCHAETAE] (CP002257) circular 21,165 28.8 29 25 - - - 4 plasmid Borreliella burgdorferi 297 plasmid 297_cp32-9 [SPIROCHAETAE] (CP002262) circular 21,172 28.3 29 24 - - - 5 plasmid Borreliella burgdorferi 297 plasmid 297_lp17 [SPIROCHAETAE] (CP002264) linear 12,965 24.1 11 10 - - - 1 plasmid Borreliella burgdorferi 297 plasmid 297_lp28-1 [SPIROCHAETAE] (CP002265) linear 20,978 30.7 12 10 - - - 2 plasmid Borreliella burgdorferi 297 plasmid 297_lp28-3 [SPIROCHAETAE] (CP002253) linear 25,211 25.0 18 17 - - - 1 plasmid Borreliella burgdorferi 297 plasmid 297_lp28-4 [SPIROCHAETAE] (CP002266) linear 25,788 24.5 21 19 - - - 2 plasmid Borreliella burgdorferi 297 plasmid 297_lp28-5 [SPIROCHAETAE] (CP002267) linear 20,974 24.3 14 13 - - - 1 plasmid

9 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Borreliella burgdorferi 297 plasmid 297_lp28-6 [SPIROCHAETAE] (CP002259) linear 22,135 33.0 24 24 - - - - plasmid Borreliella burgdorferi 297 plasmid 297_lp36 [SPIROCHAETAE] (CP002256) linear 22,715 25.7 21 18 - - - 3 plasmid Borreliella burgdorferi 297 plasmid 297_lp38 [SPIROCHAETAE] (CP002258) linear 27,035 25.4 27 26 - - - 1 plasmid Borreliella burgdorferi 297 plasmid 297_lp54 [SPIROCHAETAE] (CP001653) linear 48,220 28.3 59 58 - - - 1 plasmid Borreliella burgdorferi 29805 plasmid cp26 [SPIROCHAETAE] (CP001550) circular 26,537 26.3 26 26 - - - - plasmid Borreliella burgdorferi 29805 plasmid cp32-12 [SPIROCHAETAE] (CP001545) circular 27,704 28.1 38 38 - - - - plasmid Borreliella burgdorferi 29805 plasmid cp32-4 [SPIROCHAETAE] (CP001556) circular 30,617 29.1 42 42 - - - - plasmid Borreliella burgdorferi 29805 plasmid cp32-5 [SPIROCHAETAE] (CP001546) circular 22,534 28.4 30 24 - - - 6 plasmid Borreliella burgdorferi 29805 plasmid cp32-7 [SPIROCHAETAE] (CP001558) circular 29,694 29.2 42 42 - - - - plasmid Borreliella burgdorferi 29805 plasmid cp32-9 [SPIROCHAETAE] (CP001549) circular 30,414 29.1 42 36 - - - 6 plasmid Borreliella burgdorferi 29805 plasmid lp17 [SPIROCHAETAE] (CP001551) linear 17,032 22.9 16 14 - - - 2 plasmid Borreliella burgdorferi 29805 plasmid lp25 [SPIROCHAETAE] (CP001553) linear 24,093 23.3 16 14 - - - 2 plasmid Borreliella burgdorferi 29805 plasmid lp28-2 [SPIROCHAETAE] (CP001559) linear 29,870 31.6 36 35 - - - 1 plasmid Borreliella burgdorferi 29805 plasmid lp28-3 [SPIROCHAETAE] (CP001547) linear 31,052 25.2 19 17 - - - 2 plasmid Borreliella burgdorferi 29805 plasmid lp28-4 [SPIROCHAETAE] (CP001552) linear 29,469 24.5 27 22 - - - 5 plasmid Borreliella burgdorferi 29805 plasmid lp28-6 [SPIROCHAETAE] (CP001555) linear 30,159 31.8 32 32 - - - - plasmid Borreliella burgdorferi 29805 plasmid lp36 [SPIROCHAETAE] (CP001557) linear 34,551 30.2 21 13 - - - 8 plasmid Borreliella burgdorferi 29805 plasmid lp38 [SPIROCHAETAE] (CP001548) linear 38,696 26.1 32 27 - - - 5 plasmid Borreliella burgdorferi 29805 plasmid lp54 [SPIROCHAETAE] (CP001554) linear 53,849 28.1 65 64 - - - 1 plasmid Borreliella burgdorferi 31 plasmid pcp26 [SPIROCHAETAE] (AE000792) circular 26,498 26.3 26 24 - - - 2 genome Borreliella burgdorferi 31 plasmid plp17 [SPIROCHAETAE] (AE000793) linear 16,821 23.1 19 14 - - - 5 genome Borreliella burgdorferi 31 plasmid plp25 [SPIROCHAETAE] (AE000785) linear 24,177 23.4 16 9 - - - 6 genome Borreliella burgdorferi 31 plasmid plp28-1 [SPIROCHAETAE] (AE000794) linear 28,155 32.7 33 16 - - - 17 genome Borreliella burgdorferi 31 plasmid plp28-2 [SPIROCHAETAE] (AE000786) linear 29,766 31.6 33 29 - - - 3 genome Borreliella burgdorferi 31 plasmid plp28-3 [SPIROCHAETAE] (AE000784) linear 28,601 25.0 28 19 - - - 9 genome Borreliella burgdorferi 31 plasmid plp28-4 [SPIROCHAETAE] (AE000789) linear 27,323 24.5 25 19 - - - 6 genome Borreliella burgdorferi 31 plasmid plp36 [SPIROCHAETAE] (AE000788) linear 36,849 26.9 37 28 - - - 9 genome Borreliella burgdorferi 31 plasmid plp38 [SPIROCHAETAE] (AE000787) linear 38,829 26.1 36 28 - - - 7 genome Borreliella burgdorferi 31 plasmid plp54 [SPIROCHAETAE] (AE000790) linear 53,657 28.1 65 54 - - - 11 genome Borreliella burgdorferi 64b plasmid cp26 [SPIROCHAETAE] (CP001422) circular 26,525 26.3 26 26 - - - - plasmid Borreliella burgdorferi 64b plasmid cp32-1 [SPIROCHAETAE] (CP001414) circular 30,327 29.1 41 41 - - - - plasmid Borreliella burgdorferi 64b plasmid cp32-11 [SPIROCHAETAE] (CP001426) circular 30,260 29.0 42 42 - - - - plasmid Borreliella burgdorferi 64b plasmid cp32-3-8 [SPIROCHAETAE] (CP001418) circular 61,062 29.1 86 86 - - - - plasmid Borreliella burgdorferi 64b plasmid cp32-4 [SPIROCHAETAE] (CP001411) circular 30,375 29.4 42 39 - - - 3 plasmid Borreliella burgdorferi 64b plasmid cp32-5 [SPIROCHAETAE] (CP001415) circular 30,884 29.2 42 42 - - - - plasmid Borreliella burgdorferi 64b plasmid cp32-6 [SPIROCHAETAE] (CP001427) circular 30,755 29.1 42 42 - - - - plasmid Borreliella burgdorferi 64b plasmid cp32-7 [SPIROCHAETAE] (CP001416) circular 29,673 29.3 42 42 - - - - plasmid Borreliella burgdorferi 64b plasmid cp32-9 [SPIROCHAETAE] (CP001424) circular 22,471 28.6 30 23 - - - 7 plasmid Borreliella burgdorferi 64b plasmid lp17 [SPIROCHAETAE] (CP001413) linear 16,600 22.8 16 15 - - - 1 plasmid Borreliella burgdorferi 64b plasmid lp28-1 [SPIROCHAETAE] (CP001423) linear 30,663 34.8 19 16 - - - 3 plasmid Borreliella burgdorferi 64b plasmid lp28-2 [SPIROCHAETAE] (CP001420) linear 28,984 31.9 34 31 - - - 3 plasmid Borreliella burgdorferi 64b plasmid lp28-3 [SPIROCHAETAE] (CP001417) linear 28,645 25.0 25 23 - - - 2 plasmid Borreliella burgdorferi 64b plasmid lp28-4 [SPIROCHAETAE] (CP001428) linear 26,992 24.9 27 20 - - - 7 plasmid Borreliella burgdorferi 64b plasmid lp28-5 [SPIROCHAETAE] (CP001412) linear 26,776 25.3 20 20 - - - - plasmid Borreliella burgdorferi 64b plasmid lp36 [SPIROCHAETAE] (CP001425) linear 36,826 26.9 39 32 - - - 7 plasmid Borreliella burgdorferi 64b plasmid lp38 [SPIROCHAETAE] (CP001419) linear 39,007 25.9 31 30 - - - 1 plasmid Borreliella burgdorferi 64b plasmid lp54 [SPIROCHAETAE] (CP001421) linear 53,263 28.2 65 62 - - - 3 plasmid Borreliella burgdorferi 72a plasmid cp26 [SPIROCHAETAE] (CP001375) circular 26,522 26.4 26 26 - - - - plasmid Borreliella burgdorferi 72a plasmid cp32-1 [SPIROCHAETAE] (CP001381) circular 30,016 29.1 43 43 - - - - plasmid Borreliella burgdorferi 72a plasmid cp32-10 [SPIROCHAETAE] (CP001379) circular 30,324 29.3 42 39 - - - 3 plasmid Borreliella burgdorferi 72a plasmid cp32-12 [SPIROCHAETAE] (CP001372) circular 27,704 28.1 38 38 - - - - plasmid Borreliella burgdorferi 72a plasmid cp32-13 [SPIROCHAETAE] (CP001371) circular 30,117 29.2 41 41 - - - - plasmid Borreliella burgdorferi 72a plasmid cp32-2-7 [SPIROCHAETAE] (CP001373) circular 30,101 29.1 43 42 - - - 1 plasmid Borreliella burgdorferi 72a plasmid cp32-3 [SPIROCHAETAE] (CP001378) linear 12,870 26.3 17 9 - - - 8 plasmid Borreliella burgdorferi 72a plasmid cp32-5 [SPIROCHAETAE] (CP001376) circular 17,016 27.1 24 22 - - - 2 plasmid Borreliella burgdorferi 72a plasmid lp17 [SPIROCHAETAE] (CP001382) linear 18,115 23.9 17 15 - - - 2 plasmid Borreliella burgdorferi 72a plasmid lp28-4 [SPIROCHAETAE] (CP001380) linear 29,630 24.6 29 24 - - - 5 plasmid Borreliella burgdorferi 72a plasmid lp36 [SPIROCHAETAE] (CP001374) linear 28,128 25.5 29 25 - - - 4 plasmid Borreliella burgdorferi 72a plasmid lp38 [SPIROCHAETAE] (CP001377) linear 27,763 25.4 20 17 - - - 3 plasmid Borreliella burgdorferi 72a plasmid lp54 [SPIROCHAETAE] (CP001370) linear 53,686 28.1 66 65 - - - 1 plasmid Borreliella burgdorferi 94a plasmid cp26 [SPIROCHAETAE] (CP001493) circular 26,507 26.3 26 26 - - - - plasmid Borreliella burgdorferi 94a plasmid cp32-10 [SPIROCHAETAE] (CP001498) circular 30,162 29.4 42 39 - - - 3 plasmid Borreliella burgdorferi 94a plasmid cp32-11 [SPIROCHAETAE] (CP001491) circular 30,648 29.3 42 42 - - - - plasmid Borreliella burgdorferi 94a plasmid cp32-5 [SPIROCHAETAE] (CP001496) circular 29,459 29.3 41 38 - - - 3 plasmid Borreliella burgdorferi 94a plasmid cp32-6 [SPIROCHAETAE] (CP001499) circular 30,816 29.1 43 39 - - - 4 plasmid Borreliella burgdorferi 94a plasmid cp32-7 [SPIROCHAETAE] (CP001492) circular 30,433 29.0 43 42 - - - 1 plasmid Borreliella burgdorferi 94a plasmid lp17 [SPIROCHAETAE] (CP001497) linear 18,110 23.9 19 16 - - - 3 plasmid Borreliella burgdorferi 94a plasmid lp28-3 [SPIROCHAETAE] (CP001502) linear 26,181 25.2 22 22 - - - - plasmid Borreliella burgdorferi 94a plasmid lp28-4 [SPIROCHAETAE] (CP001490) linear 28,038 24.4 27 19 - - - 8 plasmid Borreliella burgdorferi 94a plasmid lp36 [SPIROCHAETAE] (CP001494) linear 28,234 25.5 29 25 - - - 4 plasmid Borreliella burgdorferi 94a plasmid lp54 [SPIROCHAETAE] (CP001500) linear 53,756 28.1 64 64 - - - - plasmid Borreliella burgdorferi 94a plasmid lp56 [SPIROCHAETAE] (CP001495) linear 21,082 24.9 21 14 - - - 7 plasmid Borreliella burgdorferi B31 chromosome [SPIROCHAETAE] (AE000783) linear 910,724 28.6 860 797 5 32 - 26 genome Borreliella burgdorferi B31 plasmid pcp32-1 [SPIROCHAETAE] (AE001575) circular 30,750 29.4 42 41 - - - 1 genome Borreliella burgdorferi B31 plasmid pcp32-3 [SPIROCHAETAE] (AE001576) circular 30,223 28.9 42 39 - - - 3 genome Borreliella burgdorferi B31 plasmid pcp32-4 [SPIROCHAETAE] (AE001577) circular 30,299 29.3 42 40 - - - 2 genome Borreliella burgdorferi B31 plasmid pcp32-6 [SPIROCHAETAE] (AE001578) circular 29,838 29.3 41 40 - - - 1 genome Borreliella burgdorferi B31 plasmid pcp32-7 [SPIROCHAETAE] (AE001579) circular 30,800 29.1 44 44 - - - - genome Borreliella burgdorferi B31 plasmid pcp32-8 [SPIROCHAETAE] (AE001580) circular 30,885 29.1 42 40 - - - 2 genome Borreliella burgdorferi B31 plasmid pcp32-9 [SPIROCHAETAE] (AE001581) circular 30,651 29.3 42 32 - - - 8 genome Borreliella burgdorferi B31 plasmid plp21 [SPIROCHAETAE] (AE001582) linear 18,777 20.6 11 10 - - - 1 genome Borreliella burgdorferi B31 plasmid plp5 [SPIROCHAETAE] (AE001583) linear 5,228 23.8 6 6 - - - - genome Borreliella burgdorferi B31 plasmid plp56 [SPIROCHAETAE] (AE001584) linear 52,971 27.3 67 50 - - - 17 genome Borreliella burgdorferi Bol26 plasmid cp26 [SPIROCHAETAE] (CP001568) circular 26,523 26.3 26 26 - - - - plasmid Borreliella burgdorferi Bol26 plasmid cp32-12 [SPIROCHAETAE] (CP001565) circular 31,433 29.5 44 42 - - - 2 plasmid Borreliella burgdorferi Bol26 plasmid cp32-5 [SPIROCHAETAE] (CP001572) circular 30,186 29.3 41 41 - - - - plasmid Borreliella burgdorferi Bol26 plasmid cp32-9 [SPIROCHAETAE] (CP001570) circular 30,597 29.3 42 36 - - - 6 plasmid

10 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Borreliella burgdorferi Bol26 plasmid lp17 [SPIROCHAETAE] (CP001564) linear 17,287 22.9 18 15 - - - 3 plasmid Borreliella burgdorferi Bol26 plasmid lp28-1 [SPIROCHAETAE] (CP001566) linear 28,200 31.9 32 32 - - - - plasmid Borreliella burgdorferi Bol26 plasmid lp28-3 [SPIROCHAETAE] (CP001573) linear 17,941 33.6 12 11 - - - 1 plasmid Borreliella burgdorferi Bol26 plasmid lp28-4 [SPIROCHAETAE] (CP001569) linear 28,812 24.4 28 23 - - - 5 plasmid Borreliella burgdorferi Bol26 plasmid lp36 [SPIROCHAETAE] (CP001567) linear 36,936 26.9 36 26 - - - 10 plasmid Borreliella burgdorferi Bol26 plasmid lp54 [SPIROCHAETAE] (CP001571) linear 53,655 28.2 65 64 - - - 1 plasmid Borreliella burgdorferi CA-11.2A plasmid cp26 [SPIROCHAETAE] (CP001484) circular 26,511 26.3 26 26 - - - - plasmid Borreliella burgdorferi CA-11.2A plasmid cp32-1 [SPIROCHAETAE] (CP001479) circular 30,408 28.9 41 40 - - - 1 plasmid Borreliella burgdorferi CA-11.2A plasmid cp32-10 [SPIROCHAETAE] (CP001477) circular 30,290 29.4 42 39 - - - 3 plasmid Borreliella burgdorferi CA-11.2A plasmid cp32-13 [SPIROCHAETAE] (CP001478) circular 30,088 29.2 41 40 - - - 1 plasmid Borreliella burgdorferi CA-11.2A plasmid cp32-3 [SPIROCHAETAE] (CP001483) circular 29,762 29.4 41 40 - - - 1 plasmid Borreliella burgdorferi CA-11.2A plasmid cp32-5 [SPIROCHAETAE] (CP001475) circular 29,912 29.1 42 42 - - - - plasmid Borreliella burgdorferi CA-11.2A plasmid lp17 [SPIROCHAETAE] (CP001481) linear 18,181 23.8 18 16 - - - 2 plasmid Borreliella burgdorferi CA-11.2A plasmid lp28-3 [SPIROCHAETAE] (CP001482) linear 25,799 25.0 20 19 - - - 1 plasmid Borreliella burgdorferi CA-11.2A plasmid lp36-28-4 [SPIROCHAETAE] (CP001480) linear 54,623 24.8 58 50 - - - 8 plasmid Borreliella burgdorferi CA-11.2A plasmid lp38 [SPIROCHAETAE] (CP001476) linear 27,775 25.4 20 17 - - - 3 plasmid Borreliella burgdorferi CA-11.2A plasmid lp54 [SPIROCHAETAE] (CP001473) linear 54,021 28.2 64 63 - - - 1 plasmid Borreliella burgdorferi CA-11.2A plasmid lp56 [SPIROCHAETAE] (CP001474) linear 29,418 31.5 32 32 - - - - plasmid Borreliella burgdorferi JD1 chromosome [SPIROCHAETAE] (CP002312) linear 922,801 28.5 870 829 5 32 1 3 genome Borreliella burgdorferi JD1 plasmid JD1 cp26 [SPIROCHAETAE] (CP002316) circular 26,525 26.2 26 26 - - - - genome Borreliella burgdorferi JD1 plasmid JD1 cp32-1+5 [SPIROCHAETAE] (CP002310) circular 60,739 29.2 83 72 - - - 11 genome Borreliella burgdorferi JD1 plasmid JD1 cp32-10 [SPIROCHAETAE] (CP002323) circular 30,314 29.3 42 40 - - - 2 genome Borreliella burgdorferi JD1 plasmid JD1 cp32-11 [SPIROCHAETAE] (CP002309) circular 29,902 29.0 41 40 - - - 1 genome Borreliella burgdorferi JD1 plasmid JD1 cp32-12 [SPIROCHAETAE] (CP002321) circular 30,019 29.3 41 41 - - - - genome Borreliella burgdorferi JD1 plasmid JD1 cp32-3 [SPIROCHAETAE] (CP002320) circular 29,707 28.9 41 41 - - - - genome Borreliella burgdorferi JD1 plasmid JD1 cp32-6 [SPIROCHAETAE] (CP002307) circular 30,804 29.0 42 42 - - - - genome Borreliella burgdorferi JD1 plasmid JD1 cp32-8 [SPIROCHAETAE] (CP002311) circular 31,085 29.1 43 42 - - - 1 genome Borreliella burgdorferi JD1 plasmid JD1 cp32-9 [SPIROCHAETAE] (CP002322) circular 30,697 29.2 42 41 - - - 1 genome Borreliella burgdorferi JD1 plasmid JD1 lp17 [SPIROCHAETAE] (CP002313) linear 17,522 23.9 16 12 - - - 4 genome Borreliella burgdorferi JD1 plasmid JD1 lp25 [SPIROCHAETAE] (CP002308) linear 22,827 25.4 17 12 - - - 5 genome Borreliella burgdorferi JD1 plasmid JD1 lp28-1 [SPIROCHAETAE] (CP002306) linear 24,354 32.7 21 19 - - - 2 genome Borreliella burgdorferi JD1 plasmid JD1 lp28-3 [SPIROCHAETAE] (CP002314) linear 28,797 25.0 23 22 - - - 1 genome Borreliella burgdorferi JD1 plasmid JD1 lp28-4 [SPIROCHAETAE] (CP002318) linear 30,096 24.7 28 22 - - - 6 genome Borreliella burgdorferi JD1 plasmid JD1 lp28-5 [SPIROCHAETAE] (CP002317) linear 24,614 23.9 16 13 - - - 3 genome Borreliella burgdorferi JD1 plasmid JD1 lp28-6 [SPIROCHAETAE] (CP002324) linear 26,981 32.4 31 31 - - - - genome Borreliella burgdorferi JD1 plasmid JD1 lp28-7 [SPIROCHAETAE] (CP002319) linear 29,993 31.6 34 34 - - - - genome Borreliella burgdorferi JD1 plasmid JD1 lp36 [SPIROCHAETAE] (CP002315) linear 22,808 25.6 26 20 - - - 6 genome Borreliella burgdorferi JD1 plasmid JD1 lp38 [SPIROCHAETAE] (CP002325) linear 27,590 22.9 21 19 - - - 2 genome Borreliella burgdorferi JD1 plasmid JD1_lp54 [SPIROCHAETAE] (CP001652) linear 52,916 28.2 64 64 - - - - genome Borreliella burgdorferi N40 chromosome [SPIROCHAETAE] (CP002228) linear 902,191 28.6 854 813 5 32 1 3 genome Borreliella burgdorferi N40 plasmid N40_cp26 [SPIROCHAETAE] (CP002239) circular 26,498 26.3 26 26 - - - - genome Borreliella burgdorferi N40 plasmid N40_cp32-10 [SPIROCHAETAE] (CP002240) circular 30,154 29.2 41 40 - - - 1 genome Borreliella burgdorferi N40 plasmid N40_cp32-12 [SPIROCHAETAE] (CP002238) circular 27,767 28.1 38 38 - - - - genome Borreliella burgdorferi N40 plasmid N40_cp32-4 [SPIROCHAETAE] (CP002235) circular 15,915 27.0 19 17 - - - 2 genome Borreliella burgdorferi N40 plasmid N40_cp32-5 [SPIROCHAETAE] (CP002227) circular 29,615 29.2 41 34 - - - 7 genome Borreliella burgdorferi N40 plasmid N40_cp32-7 [SPIROCHAETAE] (CP002229) circular 17,483 27.2 26 21 - - - 5 genome Borreliella burgdorferi N40 plasmid N40_cp32-9 [SPIROCHAETAE] (CP002242) circular 30,658 29.0 42 35 - - - 7 genome Borreliella burgdorferi N40 plasmid N40_lp17 [SPIROCHAETAE] (CP002241) linear 20,672 24.3 18 17 - - - 1 genome Borreliella burgdorferi N40 plasmid N40_lp25 [SPIROCHAETAE] (CP002234) linear 23,394 23.3 13 10 - - - 3 genome Borreliella burgdorferi N40 plasmid N40_lp28-2 [SPIROCHAETAE] (CP002232) linear 29,521 31.7 35 33 - - - 2 genome Borreliella burgdorferi N40 plasmid N40_lp28-4 [SPIROCHAETAE] (CP002236) linear 29,424 24.6 27 21 - - - 6 genome Borreliella burgdorferi N40 plasmid N40_lp28-5 [SPIROCHAETAE] (CP002233) linear 26,642 25.3 20 20 - - - - genome Borreliella burgdorferi N40 plasmid N40_lp36 [SPIROCHAETAE] (CP002230) linear 29,194 31.6 33 29 - - - 4 genome Borreliella burgdorferi N40 plasmid N40_lp38 [SPIROCHAETAE] (CP002237) linear 37,903 26.0 29 26 - - - 3 genome Borreliella burgdorferi N40 plasmid N40_lp54 [SPIROCHAETAE] (CP001651) linear 53,786 28.1 65 64 - - - 1 genome Borreliella burgdorferi plasmid cp18-2 [SPIROCHAETAE] (AF169008) circular 21,170 28.3 32 31 - - - 1 plasmid Borreliella burgdorferi plasmid lp16.9 [SPIROCHAETAE] (U43414) linear 16,933 23.1 14 14 - - - - plasmid Borreliella burgdorferi WI91-23 plasmid cp26 [SPIROCHAETAE] (CP001446) circular 26,506 26.2 26 26 - - - - plasmid Borreliella burgdorferi WI91-23 plasmid cp32-1 [SPIROCHAETAE] (CP001445) circular 30,026 29.1 41 41 - - - - plasmid Borreliella burgdorferi WI91-23 plasmid cp32-10 [SPIROCHAETAE] (CP001449) circular 29,756 29.1 41 41 - - - - plasmid Borreliella burgdorferi WI91-23 plasmid cp32-11 [SPIROCHAETAE] (CP001451) circular 30,772 29.0 42 41 - - - 1 plasmid Borreliella burgdorferi WI91-23 plasmid cp32-4 [SPIROCHAETAE] (CP001444) circular 13,540 26.8 19 19 - - - - plasmid Borreliella burgdorferi WI91-23 plasmid cp32-5 [SPIROCHAETAE] (CP001453) circular 18,338 27.6 26 23 - - - 3 plasmid Borreliella burgdorferi WI91-23 plasmid cp32-6 [SPIROCHAETAE] (CP001450) circular 30,017 29.4 41 39 - - - 2 plasmid Borreliella burgdorferi WI91-23 plasmid cp32-7 [SPIROCHAETAE] (CP001457) circular 30,052 29.1 42 39 - - - 3 plasmid Borreliella burgdorferi WI91-23 plasmid lp17 [SPIROCHAETAE] (CP001461) linear 15,386 23.4 12 12 - - - - plasmid Borreliella burgdorferi WI91-23 plasmid lp25 [SPIROCHAETAE] (CP001459) linear 24,661 23.2 15 11 - - - 4 plasmid Borreliella burgdorferi WI91-23 plasmid lp28-1 [SPIROCHAETAE] (CP001456) linear 26,634 32.6 16 12 - - - 4 plasmid Borreliella burgdorferi WI91-23 plasmid lp28-3 [SPIROCHAETAE] (CP001452) linear 27,543 25.1 20 19 - - - 1 plasmid Borreliella burgdorferi WI91-23 plasmid lp28-4 [SPIROCHAETAE] (CP001454) linear 28,237 24.5 24 19 - - - 5 plasmid Borreliella burgdorferi WI91-23 plasmid lp28-6 [SPIROCHAETAE] (CP001455) linear 29,782 32.0 32 32 - - - - plasmid Borreliella burgdorferi WI91-23 plasmid lp36 [SPIROCHAETAE] (CP001448) linear 30,134 25.5 32 24 - - - 8 plasmid Borreliella burgdorferi WI91-23 plasmid lp38 [SPIROCHAETAE] (CP001458) linear 38,893 26.0 32 25 - - - 7 plasmid Borreliella burgdorferi WI91-23 plasmid lp5 [SPIROCHAETAE] (CP001462) linear 5,252 23.6 6 6 - - - - plasmid Borreliella burgdorferi WI91-23 plasmid lp54 [SPIROCHAETAE] (CP001447) linear 53,783 28.1 64 63 - - - 1 plasmid Borreliella burgdorferi WI91-23 plasmid lp56 [SPIROCHAETAE] (CP001443) linear 27,581 31.9 32 31 - - - 1 plasmid Borreliella burgdorferi ZS7 chromosome [SPIROCHAETAE] (CP001205) linear 906,707 28.5 858 814 3 32 2 7 genome Borreliella burgdorferi ZS7 plasmid pZS7_cp26 [SPIROCHAETAE] (CP001212) circular 26,514 26.3 26 26 - - - - genome Borreliella burgdorferi ZS7 plasmid pZS7_cp32-1 [SPIROCHAETAE] (CP001206) circular 30,330 29.1 41 38 - - - 3 genome Borreliella burgdorferi ZS7 plasmid pZS7_cp32-12 [SPIROCHAETAE] (CP001200) circular 29,806 29.3 41 41 - - - - genome Borreliella burgdorferi ZS7 plasmid pZS7_cp32-3+10 [SPIROCHAETAE] (CP001202) circular 48,168 28.0 66 63 - - - 3 genome Borreliella burgdorferi ZS7 plasmid pZS7_cp32-4 [SPIROCHAETAE] (CP001208) circular 30,964 29.0 43 42 - - - 1 genome Borreliella burgdorferi ZS7 plasmid pZS7_cp32-9 [SPIROCHAETAE] (CP001211) circular 30,467 29.3 42 36 - - - 6 genome Borreliella burgdorferi ZS7 plasmid pZS7_lp17 [SPIROCHAETAE] (CP001204) linear 17,266 22.9 17 15 - - - 2 genome Borreliella burgdorferi ZS7 plasmid pZS7_lp25 [SPIROCHAETAE] (CP001198) linear 24,326 23.3 18 15 - - - 3 genome Borreliella burgdorferi ZS7 plasmid pZS7_lp28-1 [SPIROCHAETAE] (CP001210) linear 23,422 31.5 19 16 - - - 3 genome Borreliella burgdorferi ZS7 plasmid pZS7_lp28-2 [SPIROCHAETAE] (CP001209) linear 29,758 31.6 34 32 - - - 2 genome

11 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Borreliella burgdorferi ZS7 plasmid pZS7_lp28-3 [SPIROCHAETAE] (CP001203) linear 28,414 25.1 25 25 - - - - genome Borreliella burgdorferi ZS7 plasmid pZS7_lp28-4 [SPIROCHAETAE] (CP001207) linear 28,885 24.4 28 22 - - - 6 genome Borreliella burgdorferi ZS7 plasmid pZS7_lp36 [SPIROCHAETAE] (CP001201) linear 36,852 26.9 36 27 - - - 9 genome Borreliella burgdorferi ZS7 plasmid pZS7_lp54 [SPIROCHAETAE] (CP001199) linear 53,615 28.1 66 65 - - - 1 genome Borreliella finlandensis SV1 plasmid SV1_cp26 [SPIROCHAETAE] (CP001522) circular 26,496 26.4 26 26 - - - - plasmid Borreliella finlandensis SV1 plasmid SV1_cp32-3 [SPIROCHAETAE] (CP001517) circular 30,053 28.7 40 40 - - - - plasmid Borreliella finlandensis SV1 plasmid SV1_cp32-4 [SPIROCHAETAE] (CP001520) circular 29,457 27.1 30 12 - - - 18 plasmid Borreliella finlandensis SV1 plasmid SV1_cp32-7 [SPIROCHAETAE] (CP001521) circular 29,578 28.9 42 41 - - - 1 plasmid Borreliella finlandensis SV1 plasmid SV1_lp17 [SPIROCHAETAE] (CP001519) linear 20,219 23.5 16 12 - - - 4 plasmid Borreliella finlandensis SV1 plasmid SV1_lp28-2 [SPIROCHAETAE] (CP001518) linear 21,708 24.8 21 14 - - - 7 plasmid Borreliella finlandensis SV1 plasmid SV1_lp28-4 [SPIROCHAETAE] (CP001523) linear 36,518 24.8 27 19 - - - 8 plasmid Borreliella finlandensis SV1 plasmid SV1_lp32-12 [SPIROCHAETAE] (CP001516) linear 52,543 27.2 62 46 - - - 16 plasmid Borreliella finlandensis SV1 plasmid SV1_lp54 [SPIROCHAETAE] (CP001524) linear 83,377 28.3 107 88 - - - 19 plasmid Borreliella garinii BgVir chromosome [SPIROCHAETAE] (CP003151) linear 905,534 28.4 846 802 4 32 1 7 genome Borreliella garinii BgVir plasmid cp26 [SPIROCHAETAE] (CP003201) circular 27,111 25.9 25 20 - - - 5 genome Borreliella garinii BgVir plasmid lp54 [SPIROCHAETAE] (CP003202) linear 61,166 26.8 69 51 - - - 18 genome Borreliella garinii Far04 plasmid Far04_cp26 [SPIROCHAETAE] (CP001319) circular 26,994 25.8 26 26 - - - - plasmid Borreliella garinii Far04 plasmid Far04_lp17 [SPIROCHAETAE] (CP001315) linear 22,433 24.1 18 16 - - - 2 plasmid Borreliella garinii Far04 plasmid Far04_lp25 [SPIROCHAETAE] (CP001317) linear 25,791 23.3 20 18 - - - 2 plasmid Borreliella garinii Far04 plasmid Far04_lp28-1 [SPIROCHAETAE] (CP001316) linear 27,689 33.6 31 30 - - - 1 plasmid Borreliella garinii Far04 plasmid Far04_lp32-10 [SPIROCHAETAE] (CP001320) linear 41,906 27.4 54 24 - - - 30 plasmid Borreliella garinii Far04 plasmid Far04_lp36 [SPIROCHAETAE] (CP001314) linear 35,446 23.8 21 14 - - - 7 plasmid Borreliella garinii Far04 plasmid Far04_lp54 [SPIROCHAETAE] (CP001318) linear 58,069 26.5 67 60 - - - 7 plasmid Borreliella garinii NMJW1 chromosome [SPIROCHAETAE] (CP003866) linear 902,789 28.4 846 802 4 32 1 7 genome Borreliella garinii PBr plasmid PBr_cp26 [SPIROCHAETAE] (CP001305) circular 27,040 25.8 26 26 - - - - plasmid Borreliella garinii PBr plasmid PBr_cp32-10 [SPIROCHAETAE] (CP001306) circular 34,837 27.8 39 18 - - - 21 plasmid Borreliella garinii PBr plasmid PBr_cp32-5 [SPIROCHAETAE] (CP001303) circular 29,694 29.2 41 41 - - - - plasmid Borreliella garinii PBr plasmid PBr_lp17 [SPIROCHAETAE] (CP001309) linear 20,872 24.3 18 18 - - - - plasmid Borreliella garinii PBr plasmid PBr_lp25 [SPIROCHAETAE] (CP001301) linear 32,543 23.5 25 22 - - - 3 plasmid Borreliella garinii PBr plasmid PBr_lp28-1 [SPIROCHAETAE] (CP001310) linear 38,262 28.0 41 38 - - - 3 plasmid Borreliella garinii PBr plasmid PBr_lp28-3 [SPIROCHAETAE] (CP001307) linear 17,609 31.2 17 13 - - - 4 plasmid Borreliella garinii PBr plasmid PBr_lp28-4 [SPIROCHAETAE] (CP001304) linear 40,280 24.4 31 26 - - - 5 plasmid Borreliella garinii PBr plasmid PBr_lp28-7 [SPIROCHAETAE] (CP001311) linear 27,006 32.0 31 29 - - - 2 plasmid Borreliella garinii PBr plasmid PBr_lp36 [SPIROCHAETAE] (CP001302) linear 36,709 25.9 24 19 - - - 5 plasmid Borreliella garinii PBr plasmid PBr_lp54 [SPIROCHAETAE] (CP001308) linear 56,869 26.5 67 66 - - - 1 plasmid Borreliella spielmanii A14S plasmid A14S_cp26 [SPIROCHAETAE] (CP001467) circular 26,217 25.8 26 26 - - - - plasmid Borreliella spielmanii A14S plasmid A14S_lp17 [SPIROCHAETAE] (CP001468) linear 25,308 24.0 23 21 - - - 2 plasmid Borreliella spielmanii A14S plasmid A14S_lp28-3 [SPIROCHAETAE] (CP001471) linear 28,035 24.5 19 13 - - - 6 plasmid Borreliella spielmanii A14S plasmid A14S_lp28-4 [SPIROCHAETAE] (CP001470) linear 30,185 24.6 28 16 - - - 12 plasmid Borreliella spielmanii A14S plasmid A14S_lp28-8 [SPIROCHAETAE] (CP001465) linear 24,828 30.0 23 19 - - - 4 plasmid Borreliella spielmanii A14S plasmid A14S_lp36 [SPIROCHAETAE] (CP001466) linear 29,429 23.5 21 17 - - - 4 plasmid Borreliella spielmanii A14S plasmid A14S_lp38 [SPIROCHAETAE] (CP001464) linear 20,932 23.6 20 15 - - - 5 plasmid Borreliella spielmanii A14S plasmid A14S_lp54 [SPIROCHAETAE] (CP001469) linear 56,055 27.1 67 67 - - - - plasmid Borreliella valaisiana VS116 plasmid VS116_cp26 [SPIROCHAETAE] (CP001432) circular 26,875 25.7 26 25 - - - 1 plasmid Borreliella valaisiana VS116 plasmid VS116_cp32-10 [SPIROCHAETAE] (CP001435) circular 27,732 28.5 38 38 - - - - plasmid Borreliella valaisiana VS116 plasmid VS116_cp32-2-7 [SPIROCHAETAE] (CP001434) circular 27,367 25.5 31 14 - - - 17 plasmid Borreliella valaisiana VS116 plasmid VS116_cp32-5 [SPIROCHAETAE] (CP001441) circular 23,419 28.6 33 24 - - - 9 plasmid Borreliella valaisiana VS116 plasmid VS116_cp9 [SPIROCHAETAE] (CP001438) circular 9,474 23.4 10 9 - - - 1 plasmid Borreliella valaisiana VS116 plasmid VS116_lp17 [SPIROCHAETAE] (CP001439) linear 20,024 23.2 17 15 - - - 2 plasmid Borreliella valaisiana VS116 plasmid VS116_lp25 [SPIROCHAETAE] (CP001437) linear 32,795 24.4 32 24 - - - 8 plasmid Borreliella valaisiana VS116 plasmid VS116_lp28-3 [SPIROCHAETAE] (CP001440) linear 81,995 25.1 76 49 - - - 27 plasmid Borreliella valaisiana VS116 plasmid VS116_lp28-8 [SPIROCHAETAE] (CP001442) linear 18,022 26.0 18 17 - - - 1 plasmid Borreliella valaisiana VS116 plasmid VS116_lp36 [SPIROCHAETAE] (CP001436) linear 23,914 24.5 18 12 - - - 6 plasmid Borreliella valaisiana VS116 plasmid VS116_lp54 [SPIROCHAETAE] (CP001433) linear 53,953 27.4 64 63 - - - 1 plasmid Borreliellia bavariensis PBi chromosome [SPIROCHAETAE] (CP000013) linear 904,246 28.3 848 802 6 32 1 7 genome Borreliellia bavariensis PBi plasmid pcp26 [SPIROCHAETAE] (CP000014) circular 27,108 25.6 26 26 - - - - genome Borreliellia bavariensis PBi plasmid plp54 [SPIROCHAETAE] (CP000015) linear 55,560 26.5 65 46 - - - 19 genome Brachybacterium faecium DSM 4810 chromosome [ACTINOBACTERIA] (CP001643) circular 3,614,992 72.0 3,191 3,068 9 50 3 61 genome Brachyspira hyodysenteriae WA1 chromosome [SPIROCHAETAE] (CP001357) circular 3,000,694 27.1 2,586 2,514 3 33 1 35 genome Brachyspira hyodysenteriae WA1 pBHWA1 [SPIROCHAETAE] (CP001360) circular 35,940 21.8 33 33 - - - - genome Brachyspira intermedia PWS/A chromosome [SPIROCHAETAE] (CP002874) circular 3,304,788 27.2 2,872 2,687 3 33 1 148 genome Brachyspira murdochii DSM 12563 chromosome [SPIROCHAETAE] (CP001959) circular 3,241,804 27.8 2,854 2,754 3 34 2 61 genome Brachyspira pilosicoli 95/1000 chromosome [SPIROCHAETAE] (CP002025) circular 2,586,443 27.9 2,289 2,059 3 33 1 193 genome Brachyspira pilosicoli B2904 chromosome [SPIROCHAETAE] (CP003490) circular 2,765,477 27.8 2,548 2,308 3 33 2 202 genome Bradyrhizobium diazoefficiens USDA 110 chromosome [PROTEOBACTERIA] (BA000040) circular 9,105,828 64.1 8,373 8,317 3 50 3 - genome Bradyrhizobium japonicum USDA 6 chromosome [PROTEOBACTERIA] (AP012206) circular 9,207,384 63.7 8,479 8,192 6 55 3 223 genome Bradyrhizobium sp. BTAi1 chromosome [PROTEOBACTERIA] (CP000494) circular 8,264,687 64.9 7,389 7,240 6 49 13 81 genome Bradyrhizobium sp. BTAi1 plasmid pBBta01 [PROTEOBACTERIA] (CP000495) circular 228,826 60.7 216 203 - - - 13 genome Bradyrhizobium sp. ORS 278 chromosome [PROTEOBACTERIA] (CU234118) circular 7,456,587 65.5 6,632 6,515 6 49 11 51 genome Bradyrhizobium sp. S23321 chromosome [PROTEOBACTERIA] (AP012279) circular 7,231,841 64.3 6,769 6,689 3 47 2 28 genome Brassica napus phytoplasma plasmid pPABN1 [TENERICUTES] (HQ637382) circular 3,529 23.9 5 5 - - - - plasmid Brevibacillus brevis NBRC 100599 chromosome [FIRMICUTES] (AP008955) circular 6,296,436 47.3 5,929 5,690 44 127 2 66 genome Brevibacterium linens plasmid LIM [FIRMICUTES] (AY004211) circular 7,610 58.9 3 3 - - - - plasmid Brevundimonas subvibrioides ATCC 15264 chromosome [PROTEOBACTERIA] (CP002102) circular 3,445,263 68.4 3,327 3,239 6 46 2 34 genome Brucella abortus A13334 chromosomeI [PROTEOBACTERIA] (CP003176) circular 2,123,773 57.2 2,088 2,024 6 41 1 15 genome Brucella abortus A13334 chromosomeII [PROTEOBACTERIA] (CP003177) circular 1,162,259 57.3 1,100 1,071 3 14 - 12 genome Brucella abortus bv. 1 str. 9-941 chromosomeI [PROTEOBACTERIA] (AE017223) circular 2,124,241 57.2 2,083 2,019 6 41 1 15 genome Brucella abortus bv. 1 str. 9-941 chromosomeII [PROTEOBACTERIA] (AE017224) circular 1,162,204 57.3 1,101 1,067 3 14 - 17 genome Brucella abortus S19 chromosome1 [PROTEOBACTERIA] (CP000887) circular 2,122,487 57.2 2,090 2,015 6 41 4 23 genome Brucella abortus S19 chromosome2 [PROTEOBACTERIA] (CP000888) circular 1,161,449 57.3 1,102 1,067 3 14 2 16 genome Brucella canis ATCC 23365 chromosomeI [PROTEOBACTERIA] (CP000872) circular 2,105,969 57.2 2,018 1,932 6 41 3 36 genome Brucella canis ATCC 23365 chromosomeII [PROTEOBACTERIA] (CP000873) circular 1,206,800 57.3 1,132 1,084 3 14 1 30 genome Brucella canis HSK A52141 chromosomeI [PROTEOBACTERIA] (CP003174) circular 2,107,023 57.2 2,019 1,931 6 41 1 40 genome Brucella canis HSK A52141 chromosomeII [PROTEOBACTERIA] (CP003175) circular 1,170,489 57.3 1,100 1,054 3 14 - 29 genome Brucella melitensis ATCC 23457 chromosomeI [PROTEOBACTERIA] (CP001488) circular 2,125,701 57.2 2,056 1,971 6 41 4 35 genome Brucella melitensis ATCC 23457 chromosomeII [PROTEOBACTERIA] (CP001489) circular 1,185,518 57.3 1,114 1,062 3 14 1 34 genome Brucella melitensis bv. 1 str. 16M chromosomeI [PROTEOBACTERIA] (AE008917) circular 2,117,144 57.2 2,043 1,938 6 40 1 58 genome

12 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Brucella melitensis bv. 1 str. 16M chromosomeII [PROTEOBACTERIA] (AE008918) circular 1,177,787 57.3 1,106 1,034 3 14 - 55 genome Brucella melitensis bv. Abortus 2308 chromosomeI [PROTEOBACTERIA] (AM040264) circular 2,121,359 57.2 2,085 2,016 6 41 3 19 genome Brucella melitensis bv. Abortus 2308 chromosomeII [PROTEOBACTERIA] (AM040265) circular 1,156,948 57.3 1,100 1,068 3 14 1 14 genome Brucella melitensis M28 chromosomeI [PROTEOBACTERIA] (CP002459) circular 2,126,133 57.2 2,056 1,971 6 41 1 37 genome Brucella melitensis M28 chromosomeII [PROTEOBACTERIA] (CP002460) circular 1,185,615 57.3 1,116 1,066 3 14 - 33 genome Brucella melitensis M5-90 chromosomeI [PROTEOBACTERIA] (CP001851) circular 2,126,451 57.2 2,061 1,961 6 41 1 52 genome Brucella melitensis M5-90 chromosomeII [PROTEOBACTERIA] (CP001852) circular 1,185,778 57.3 1,115 1,062 3 14 - 36 genome Brucella melitensis NI chromosomeI [PROTEOBACTERIA] (CP002931) circular 2,117,717 57.2 2,052 1,960 6 40 1 45 genome Brucella melitensis NI chromosomeII [PROTEOBACTERIA] (CP002932) circular 1,176,758 57.3 1,109 1,053 3 14 - 39 genome Brucella microti CCM 4915 chromosome1 [PROTEOBACTERIA] (CP001578) circular 2,117,050 57.2 2,023 1,948 6 41 1 27 genome Brucella microti CCM 4915 chromosome2 [PROTEOBACTERIA] (CP001579) circular 1,220,319 57.3 1,136 1,097 3 14 - 22 genome Brucella ovis ATCC 25840 chromosomeI [PROTEOBACTERIA] (CP000708) circular 2,111,370 57.2 2,063 1,932 6 39 3 83 genome Brucella ovis ATCC 25840 chromosomeII [PROTEOBACTERIA] (CP000709) circular 1,164,220 57.2 1,122 1,027 3 14 - 78 genome Brucella pinnipedialis B2/94 chromosomeI [PROTEOBACTERIA] (CP002078) circular 2,138,342 57.2 2,077 1,996 6 41 1 33 genome Brucella pinnipedialis B2/94 chromosomeII [PROTEOBACTERIA] (CP002079) circular 1,260,926 57.2 1,186 1,145 3 14 - 24 genome Brucella suis 1330 chromosomeI [PROTEOBACTERIA] (AE014291) circular 2,107,794 57.2 2,012 1,934 6 41 1 30 genome Brucella suis 1330 chromosomeI [PROTEOBACTERIA] (CP002997) circular 2,107,783 57.2 2,011 1,934 6 41 1 29 genome Brucella suis 1330 chromosomeII [PROTEOBACTERIA] (AE014292) circular 1,207,381 57.3 1,131 1,087 3 14 - 27 genome Brucella suis 1330 chromosomeII [PROTEOBACTERIA] (CP002998) circular 1,207,380 57.3 1,130 1,087 3 14 - 26 genome Brucella suis ATCC 23445 chromosomeI [PROTEOBACTERIA] (CP000911) circular 1,923,763 57.1 1,844 1,767 3 35 2 37 genome Brucella suis ATCC 23445 chromosomeII [PROTEOBACTERIA] (CP000912) circular 1,400,844 57.3 1,327 1,244 6 19 3 55 genome Brucella suis VBI22 chromosomeI [PROTEOBACTERIA] (CP003128) circular 2,108,637 57.2 2,014 1,937 6 41 1 29 genome Brucella suis VBI22 chromosomeII [PROTEOBACTERIA] (CP003129) circular 1,207,451 57.3 1,133 1,089 3 14 - 27 genome Buchnera aphidicola (Cinara tujafilina) chromosome [PROTEOBACTERIA] (CP001817) circular 444,925 23.0 419 349 3 30 1 36 genome Buchnera aphidicola (Schizaphis graminum) plasmid pLeu-Sg [PROTEOBACTERIA] (AF041836) circular 7,967 26.8 7 7 - - - - plasmid Buchnera aphidicola 5A (Acyrthosiphon pisum) chromosome [PROTEOBACTERIA] (CP001161) circular 642,122 26.3 599 555 1 37 - 7 genome Buchnera aphidicola Ak (Acyrthosiphon kondoi) chromosome [PROTEOBACTERIA] (CP002645) circular 641,794 25.7 620 572 3 31 3 11 genome Buchnera aphidicola Ak (Acyrthosiphon kondoi) plasmid pLeu [PROTEOBACTERIA] (CP002646) circular 7,784 26.6 7 7 - - - - genome Buchnera aphidicola APS (Acyrthosiphon pisum) chromosome [PROTEOBACTERIA] (BA000003) circular 640,681 26.3 606 564 3 32 1 1 genome Buchnera aphidicola APS (Acyrthosiphon pisum) plasmid pLeu [PROTEOBACTERIA] (AP001071) circular 7,786 26.7 7 7 - - - - genome Buchnera aphidicola BCc chromosome [PROTEOBACTERIA] (CP000263) circular 416,380 20.1 401 361 3 30 3 4 genome Buchnera aphidicola BCc plasmid pLeu-BCc [PROTEOBACTERIA] (AY438025) circular 6,054 27.3 5 5 - - - - genome Buchnera aphidicola Bp (Baizongia pistaciae) chromosome [PROTEOBACTERIA] (AE016826) circular 615,980 25.3 555 515 3 31 2 4 genome Buchnera aphidicola Bp (Baizongia pistaciae) plasmid pBBp1 [PROTEOBACTERIA] (AF492591) circular 2,399 25.4 3 3 - - - - genome Buchnera aphidicola JF98 (Acyrthosiphon pisum) chromosome [PROTEOBACTERIA] (CP002303) circular 641,771 26.3 614 408 3 31 1 171 genome Buchnera aphidicola JF99 (Acyrthosiphon pisum) chromosome [PROTEOBACTERIA] (CP002302) circular 641,716 26.3 616 562 3 31 1 19 genome Buchnera aphidicola LL01 (Acyrthosiphon pisum) chromosome [PROTEOBACTERIA] (CP002300) circular 641,799 26.3 615 535 3 31 1 45 genome Buchnera aphidicola plasmid pBPS1 [PROTEOBACTERIA] (AJ404864) circular 2,308 24.3 2 2 - - - - plasmid Buchnera aphidicola plasmid pleu-BTg [PROTEOBACTERIA] (AY546103) circular 6,521 23.9 5 5 - - - - plasmid Buchnera aphidicola plasmid pLeu-Dn [PROTEOBACTERIA] (AF041837) circular 7,768 25.9 7 7 - - - - plasmid Buchnera aphidicola Sg (Schizaphis graminum) chromosome [PROTEOBACTERIA] (AE013218) circular 641,454 25.3 622 561 3 30 2 25 genome Buchnera aphidicola TLW03 (Acyrthosiphon pisum) chromosome [PROTEOBACTERIA] (CP002301) circular 641,770 26.3 618 522 3 31 1 61 genome Buchnera aphidicola Tuc7 (Acyrthosiphon pisum) chromosome [PROTEOBACTERIA] (CP001158) circular 641,895 26.3 617 577 3 31 1 5 genome Buchnera aphidicola Ua (Uroleucon ambrosiae) chromosome [PROTEOBACTERIA] (CP002648) circular 615,380 24.1 582 533 3 30 3 12 genome Buchnera aphidicola Ua (Uroleucon ambrosiae) plasmid pLeu [PROTEOBACTERIA] (CP002649) circular 7,689 25.6 7 7 - - - - genome Burkholderia ambifaria AMMD chromosome1 [PROTEOBACTERIA] (CP000440) circular 3,556,545 66.9 3,240 3,146 12 61 3 17 genome Burkholderia ambifaria AMMD chromosome2 [PROTEOBACTERIA] (CP000441) circular 2,646,969 66.8 2,300 2,266 3 6 - 25 genome Burkholderia ambifaria AMMD chromosome3 [PROTEOBACTERIA] (CP000442) circular 1,281,472 66.5 996 982 3 2 - 9 genome Burkholderia ambifaria AMMD plasmid 1 [PROTEOBACTERIA] (CP000443) circular 43,581 65.8 47 45 - - - 2 genome Burkholderia ambifaria MC40-6 chromosome1 [PROTEOBACTERIA] (CP001025) circular 3,443,583 66.9 3,133 3,036 12 60 2 23 genome Burkholderia ambifaria MC40-6 chromosome2 [PROTEOBACTERIA] (CP001026) circular 2,769,414 66.5 2,376 2,344 3 6 - 23 genome Burkholderia ambifaria MC40-6 chromosome3 [PROTEOBACTERIA] (CP001027) circular 1,127,947 65.9 968 949 3 2 - 14 genome Burkholderia ambifaria MC40-6 plasmid pBMC401 [PROTEOBACTERIA] (CP001028) circular 301,592 61.2 266 252 - - - 14 genome Burkholderia cenocepacia AU 1054 chromosome1 [PROTEOBACTERIA] (CP000378) circular 3,294,563 66.9 2,971 2,863 12 46 2 48 genome Burkholderia cenocepacia AU 1054 chromosome2 [PROTEOBACTERIA] (CP000379) circular 2,788,459 66.9 2,432 2,387 3 5 - 37 genome Burkholderia cenocepacia AU 1054 chromosome3 [PROTEOBACTERIA] (CP000380) circular 1,196,094 67.0 1,048 1,012 3 16 1 15 genome Burkholderia cenocepacia HI2424 chromosome1 [PROTEOBACTERIA] (CP000458) circular 3,483,902 66.8 3,159 3,074 12 61 3 8 genome Burkholderia cenocepacia HI2424 chromosome2 [PROTEOBACTERIA] (CP000459) circular 2,998,664 66.9 2,631 2,605 3 5 - 18 genome Burkholderia cenocepacia HI2424 chromosome3 [PROTEOBACTERIA] (CP000460) circular 1,055,417 67.3 905 897 3 2 - 3 genome Burkholderia cenocepacia HI2424 plasmid 1 [PROTEOBACTERIA] (CP000461) circular 164,857 61.8 155 148 - - - 7 genome Burkholderia cenocepacia J2315 chromosome1 [PROTEOBACTERIA] (AM747720) circular 3,870,082 66.7 3,566 3,448 12 66 1 38 genome Burkholderia cenocepacia J2315 chromosome2 [PROTEOBACTERIA] (AM747721) circular 3,217,062 67.3 2,844 2,819 3 5 - 17 genome Burkholderia cenocepacia J2315 chromosome3 [PROTEOBACTERIA] (AM747722) circular 875,977 66.9 776 761 3 2 - 10 genome Burkholderia cenocepacia J2315 plasmid pBCJ2315 [PROTEOBACTERIA] (AM747723) circular 92,661 62.8 87 86 - - - 1 genome Burkholderia cenocepacia MC0-3 chromosome1 [PROTEOBACTERIA] (CP000958) circular 3,532,883 66.7 3,217 3,125 12 60 2 17 genome Burkholderia cenocepacia MC0-3 chromosome2 [PROTEOBACTERIA] (CP000959) circular 3,213,911 66.6 2,789 2,743 3 5 - 38 genome Burkholderia cenocepacia MC0-3 chromosome3 [PROTEOBACTERIA] (CP000960) circular 1,224,595 66.2 1,050 1,030 3 2 - 15 genome Burkholderia cepacia GG4 chromosome 1 [PROTEOBACTERIA] (CP003774) circular 3,463,655 66.9 3,157 3,051 7 54 1 44 genome Burkholderia cepacia GG4 chromosome 2 [PROTEOBACTERIA] (CP003775) circular 3,003,666 66.5 2,658 2,608 1 3 - 46 genome Burkholderia cepacia plasmid pIJB1 [PROTEOBACTERIA] (JX847411) circular 99,001 61.8 68 68 - - - - plasmid Burkholderia gladioli BSR3 chromosome1 [PROTEOBACTERIA] (CP002599) circular 4,413,616 67.5 3,853 3,689 9 58 1 96 genome Burkholderia gladioli BSR3 chromosome2 [PROTEOBACTERIA] (CP002600) circular 3,700,833 68.6 3,045 2,952 6 10 - 77 genome Burkholderia gladioli BSR3 plasmid bgla_1p [PROTEOBACTERIA] (CP002601) circular 276,215 63.3 220 208 - - - 12 genome Burkholderia gladioli BSR3 plasmid bgla_2p [PROTEOBACTERIA] (CP002602) circular 129,399 62.8 115 108 - 1 - 6 genome Burkholderia gladioli BSR3 plasmid bgla_3p [PROTEOBACTERIA] (CP002603) circular 128,650 59.6 134 131 - - - 3 genome Burkholderia gladioli BSR3 plasmid bgla_4p [PROTEOBACTERIA] (CP002604) circular 403,586 62.4 341 322 - - - 19 genome Burkholderia glumae BGR1 chromosome1 [PROTEOBACTERIA] (CP001503) circular 3,906,507 68.1 3,568 3,429 9 57 1 72 genome Burkholderia glumae BGR1 chromosome2 [PROTEOBACTERIA] (CP001504) circular 2,827,333 68.8 2,198 2,131 6 8 - 53 genome Burkholderia glumae BGR1 plasmid pbglu_1p [PROTEOBACTERIA] (CP001505) circular 133,591 60.6 129 117 - - - 12 genome Burkholderia glumae BGR1 plasmid pbglu_2p [PROTEOBACTERIA] (CP001506) circular 141,792 63.2 112 106 - - - 6 genome Burkholderia glumae BGR1 plasmid pbglu_3p [PROTEOBACTERIA] (CP001507) circular 141,067 62.7 114 104 - 1 - 9 genome Burkholderia glumae BGR1 plasmid pbglu_4p [PROTEOBACTERIA] (CP001508) circular 134,346 62.7 113 108 - 1 - 4 genome Burkholderia lata 383 chromosome1 [PROTEOBACTERIA] (CP000151) circular 3,694,126 66.2 3,360 3,263 12 60 3 21 genome Burkholderia lata 383 chromosome2 [PROTEOBACTERIA] (CP000152) circular 3,587,082 66.7 3,156 3,121 3 7 - 25 genome Burkholderia lata 383 chromosome3 [PROTEOBACTERIA] (CP000150) circular 1,395,069 65.3 1,184 1,168 3 2 - 11 genome Burkholderia mallei ATCC 23344 chromosome1 [PROTEOBACTERIA] (CP000010) circular 3,510,148 68.2 3,393 2,995 4 47 1 346 genome Burkholderia mallei ATCC 23344 chromosome2 [PROTEOBACTERIA] (CP000011) circular 2,325,379 69.0 2,113 2,027 6 9 2 69 genome

13 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Burkholderia mallei NCTC 10229 chromosomeI [PROTEOBACTERIA] (CP000546) circular 3,458,208 68.2 3,161 3,034 4 47 2 74 genome Burkholderia mallei NCTC 10229 chromosomeII [PROTEOBACTERIA] (CP000545) circular 2,284,095 68.9 1,920 1,838 6 10 - 66 genome Burkholderia mallei NCTC 10247 chromosomeI [PROTEOBACTERIA] (CP000548) circular 3,495,687 68.2 3,187 3,050 4 46 3 84 genome Burkholderia mallei NCTC 10247 chromosomeII [PROTEOBACTERIA] (CP000547) circular 2,352,693 69.0 1,979 1,893 6 10 - 70 genome Burkholderia mallei SAVP1 chromosomeI [PROTEOBACTERIA] (CP000526) circular 3,497,479 68.1 3,195 3,071 5 48 1 70 genome Burkholderia mallei SAVP1 chromosomeII [PROTEOBACTERIA] (CP000525) circular 1,734,922 68.9 1,453 1,390 4 8 - 51 genome Burkholderia multivorans ATCC 17616 chromosome1 [PROTEOBACTERIA] (AP009385) circular 3,448,421 66.9 3,185 3,084 9 59 1 32 genome Burkholderia multivorans ATCC 17616 chromosome1 [PROTEOBACTERIA] (CP000868) circular 3,448,466 66.9 3,191 3,088 9 59 2 33 genome Burkholderia multivorans ATCC 17616 chromosome2 [PROTEOBACTERIA] (AP009386) circular 2,473,162 67.1 2,152 2,113 3 5 - 31 genome Burkholderia multivorans ATCC 17616 chromosome2 [PROTEOBACTERIA] (CP000869) circular 2,472,928 67.1 2,150 2,111 3 5 - 31 genome Burkholderia multivorans ATCC 17616 chromosome3 [PROTEOBACTERIA] (AP009387) circular 919,805 65.8 828 799 3 2 - 24 genome Burkholderia multivorans ATCC 17616 chromosome3 [PROTEOBACTERIA] (CP000870) circular 919,806 65.8 826 798 3 2 - 23 genome Burkholderia multivorans ATCC 17616 plasmid pBMUL01 [PROTEOBACTERIA] (CP000871) circular 167,422 61.3 151 148 - - - 3 genome Burkholderia multivorans ATCC 17616 plasmid pTGL1 [PROTEOBACTERIA] (AP009388) circular 167,422 61.3 149 146 - - - 3 genome Burkholderia phenoliruptrix BR3459a chromosome1 [PROTEOBACTERIA] (CP003863) circular 4,152,217 63.5 3,661 3,559 9 54 1 38 genome Burkholderia phenoliruptrix BR3459a chromosome2 [PROTEOBACTERIA] (CP003864) circular 2,713,495 63.7 2,354 2,316 9 8 - 21 genome Burkholderia phenoliruptrix BR3459a plasmid pSYMBR3459 [PROTEOBACTERIA] (CP003865) circular 785,419 59.1 684 633 - - - 51 genome Burkholderia phymatum STM815 chromosome1 [PROTEOBACTERIA] (CP001043) circular 3,479,187 63.0 3,149 3,048 12 56 2 31 genome Burkholderia phymatum STM815 chromosome2 [PROTEOBACTERIA] (CP001044) circular 2,697,374 62.3 2,390 2,324 6 6 - 54 genome Burkholderia phymatum STM815 plasmid pBPHY01 [PROTEOBACTERIA] (CP001045) circular 1,904,893 61.9 1,641 1,579 - 1 - 61 genome Burkholderia phymatum STM815 plasmid pBPHY02 [PROTEOBACTERIA] (CP001046) circular 595,108 59.2 530 468 - - - 62 genome Burkholderia phytofirmans PsJN chromosome1 [PROTEOBACTERIA] (CP001052) circular 4,467,537 62.6 3,963 3,855 9 55 2 41 genome Burkholderia phytofirmans PsJN chromosome2 [PROTEOBACTERIA] (CP001053) circular 3,625,999 62.1 3,194 3,128 9 8 - 49 genome Burkholderia phytofirmans PsJN plasmid pBPHYT01 [PROTEOBACTERIA] (CP001054) circular 121,122 58.3 154 151 - - - 3 genome Burkholderia pseudomallei 1026b chromosome1 [PROTEOBACTERIA] (CP002833) circular 4,092,668 67.9 3,695 3,603 9 52 1 30 genome Burkholderia pseudomallei 1026b chromosome2 [PROTEOBACTERIA] (CP002834) circular 3,138,747 68.5 2,547 2,501 3 8 - 35 genome Burkholderia pseudomallei 1106a chromosomeI [PROTEOBACTERIA] (CP000572) circular 3,988,455 68.0 3,522 3,431 9 52 2 28 genome Burkholderia pseudomallei 1106a chromosomeII [PROTEOBACTERIA] (CP000573) circular 3,100,794 68.6 2,488 2,457 3 8 - 20 genome Burkholderia pseudomallei 1710b chromosomeI [PROTEOBACTERIA] (CP000124) circular 4,126,292 67.6 3,684 3,585 9 53 2 35 genome Burkholderia pseudomallei 1710b chromosomeII [PROTEOBACTERIA] (CP000125) circular 3,181,762 68.5 2,524 2,484 3 8 - 29 genome Burkholderia pseudomallei 668 chromosomeI [PROTEOBACTERIA] (CP000570) circular 3,912,947 68.0 3,483 3,373 9 53 1 47 genome Burkholderia pseudomallei 668 chromosomeII [PROTEOBACTERIA] (CP000571) circular 3,127,456 68.6 2,556 2,499 3 8 - 46 genome Burkholderia pseudomallei BPC006 chromosome1 [PROTEOBACTERIA] (CP003781) circular 4,001,777 68.0 3,559 3,450 9 52 1 47 genome Burkholderia pseudomallei BPC006 chromosome2 [PROTEOBACTERIA] (CP003782) circular 3,153,284 68.5 2,565 2,518 3 8 - 36 genome Burkholderia pseudomallei K96243 chromosome1 [PROTEOBACTERIA] (BX571965) circular 4,074,542 67.7 3,529 3,398 9 53 7 62 genome Burkholderia pseudomallei K96243 chromosome2 [PROTEOBACTERIA] (BX571966) circular 3,173,005 68.5 2,406 2,328 3 8 1 66 genome Burkholderia pseudomallei MSHR346 chromosomeI [PROTEOBACTERIA] (CP001408) circular 4,098,576 67.7 3,659 3,536 9 52 3 59 genome Burkholderia rhizoxinica HKI 454 chromosome [PROTEOBACTERIA] (FR687359) circular 2,755,309 61.2 2,434 2,242 9 47 1 135 genome Burkholderia rhizoxinica HKI 454 plasmid pBRH01 [PROTEOBACTERIA] (FR687360) circular 822,304 59.7 616 555 - - - 61 genome Burkholderia rhizoxinica HKI 454 plasmid pBRH02 [PROTEOBACTERIA] (FR687361) circular 172,525 57.4 162 136 - - - 26 genome Burkholderia sp. CCGE1001 chromosome1 [PROTEOBACTERIA] (CP002519) circular 4,063,449 63.7 3,573 3,480 9 56 3 25 genome Burkholderia sp. CCGE1001 chromosome2 [PROTEOBACTERIA] (CP002520) circular 2,770,302 63.5 2,422 2,377 9 8 - 28 genome Burkholderia sp. CCGE1002 chromosome1 [PROTEOBACTERIA] (CP002013) circular 3,518,940 64.1 3,186 3,080 9 56 2 38 genome Burkholderia sp. CCGE1002 chromosome2 [PROTEOBACTERIA] (CP002014) circular 2,593,966 63.2 2,312 2,228 12 16 - 56 genome Burkholderia sp. CCGE1002 chromosome3 [PROTEOBACTERIA] (CP002015) circular 1,282,816 62.6 1,159 1,105 - 2 - 52 genome Burkholderia sp. CCGE1002 plasmid pBC201 [PROTEOBACTERIA] (CP002016) circular 489,136 59.2 439 385 - - - 54 genome Burkholderia sp. CCGE1003 chromosome1 [PROTEOBACTERIA] (CP002217) circular 4,077,097 63.4 3,532 3,425 9 55 2 41 genome Burkholderia sp. CCGE1003 chromosome2 [PROTEOBACTERIA] (CP002218) circular 2,966,498 63.0 2,534 2,486 9 8 - 31 genome Burkholderia sp. KJ006 chromosome1 [PROTEOBACTERIA] (CP003514) circular 3,145,156 67.3 2,829 2,743 12 59 1 14 genome Burkholderia sp. KJ006 chromosome2 [PROTEOBACTERIA] (CP003515) circular 2,356,985 67.1 1,995 1,958 3 5 - 29 genome Burkholderia sp. KJ006 chromosome3 [PROTEOBACTERIA] (CP003516) circular 1,082,410 67.4 882 851 3 3 - 25 genome Burkholderia sp. KJ006 plasmid pKJ006 [PROTEOBACTERIA] (CP003517) circular 45,361 59.1 53 52 - - - 1 genome Burkholderia sp. YI23 chromosome1 [PROTEOBACTERIA] (CP003087) circular 3,131,280 63.6 2,944 2,860 12 56 1 14 genome Burkholderia sp. YI23 chromosome2 [PROTEOBACTERIA] (CP003088) circular 1,773,019 63.7 1,622 1,596 3 5 - 18 genome Burkholderia sp. YI23 chromosome3 [PROTEOBACTERIA] (CP003089) circular 1,569,570 63.7 1,404 1,385 3 3 - 13 genome Burkholderia sp. YI23 plasmid byi_1p [PROTEOBACTERIA] (CP003090) circular 1,951,047 63.0 1,774 1,733 - 1 - 40 genome Burkholderia sp. YI23 plasmid byi_2p [PROTEOBACTERIA] (CP003091) circular 356,263 58.7 395 385 - - - 10 genome Burkholderia sp. YI23 plasmid byi_3p [PROTEOBACTERIA] (CP003092) circular 115,232 59.4 98 95 - - - 3 genome Burkholderia thailandensis E264 chromosomeI [PROTEOBACTERIA] (CP000086) circular 3,809,201 67.3 3,399 3,293 9 52 1 44 genome Burkholderia thailandensis E264 chromosomeII [PROTEOBACTERIA] (CP000085) circular 2,914,771 68.1 2,436 2,400 3 7 - 26 genome Burkholderia vietnamiensis G4 chromosome1 [PROTEOBACTERIA] (CP000614) circular 3,652,814 66.5 3,306 3,191 12 61 3 39 genome Burkholderia vietnamiensis G4 chromosome2 [PROTEOBACTERIA] (CP000615) circular 2,411,759 66.8 2,087 2,042 3 5 - 37 genome Burkholderia vietnamiensis G4 chromosome3 [PROTEOBACTERIA] (CP000616) circular 1,241,007 66.4 1,092 1,045 3 2 - 42 genome Burkholderia vietnamiensis G4 plasmid pBVIE01 [PROTEOBACTERIA] (CP000617) circular 397,868 58.2 378 373 - - - 5 genome Burkholderia vietnamiensis G4 plasmid pBVIE02 [PROTEOBACTERIA] (CP000618) circular 265,616 61.8 260 248 - - - 12 genome Burkholderia vietnamiensis G4 plasmid pBVIE03 [PROTEOBACTERIA] (CP000619) circular 226,679 59.8 248 244 - - - 4 genome Burkholderia vietnamiensis G4 plasmid pBVIE04 [PROTEOBACTERIA] (CP000620) circular 107,231 61.0 109 104 - - - 5 genome Burkholderia vietnamiensis G4 plasmid pBVIE05 [PROTEOBACTERIA] (CP000621) circular 88,096 61.7 112 110 - - - 2 genome Burkholderia xenovorans LB400 chromosome1 [PROTEOBACTERIA] (CP000270) circular 4,895,836 62.8 4,408 4,273 9 56 3 67 genome Burkholderia xenovorans LB400 chromosome2 [PROTEOBACTERIA] (CP000271) circular 3,363,523 62.8 2,935 2,866 9 9 - 51 genome Burkholderia xenovorans LB400 chromosome3 [PROTEOBACTERIA] (CP000272) circular 1,471,779 61.7 1,284 1,237 - - - 47 genome Butyrivibrio fibrisolvens OB157 plasmid pRJF1 [FIRMICUTES] (M94552) circular 2,631 36.3 2 2 - - - - plasmid Butyrivibrio fibrisolvens OB157 plasmid pRJF2 [FIRMICUTES] (L31578) circular 2,970 35.3 2 2 - - - - plasmid Butyrivibrio fibrisolvens plasmid pOM1 [FIRMICUTES] (L31579) circular 2,804 40.6 2 2 - - - - plasmid Butyrivibrio proteoclasticus B316 chromosome 1 [FIRMICUTES] (CP001810) circular 3,554,804 40.2 3,004 2,897 12 47 1 46 genome Butyrivibrio proteoclasticus B316 chromosome 2 [FIRMICUTES] (CP001811) circular 302,358 40.0 254 242 6 2 - 4 genome Butyrivibrio proteoclasticus B316 plasmid pCY186 [FIRMICUTES] (CP001813) circular 186,325 38.1 192 190 - 1 - 1 genome Butyrivibrio proteoclasticus B316 plasmid pCY360 [FIRMICUTES] (CP001812) circular 361,399 39.0 413 410 - - - 3 genome Caedibacter taeniospiralis plasmid pKAP298 [PROTEOBACTERIA] (AY422720) circular 49,112 37.3 57 57 - - - - plasmid Caldanaerobactersubterraneus tengcongensis MB4 chromosome [FIRMICUTES] (AE008691) circular 2,689,445 37.6 2,652 2,494 12 56 2 88 genome Caldicellulosiruptor bescii DSM 6725 chromosome [FIRMICUTES] (CP001393) circular 2,919,718 35.2 2,792 2,608 9 47 2 126 genome Caldicellulosiruptor hydrothermalis 108 chromosome [FIRMICUTES] (CP002219) circular 2,770,676 36.1 2,653 2,540 9 47 2 55 genome Caldicellulosiruptor kristjanssonii 177R1B chromosome [FIRMICUTES] (CP002326) circular 2,786,473 36.1 2,617 2,466 9 47 2 93 genome Caldicellulosiruptor kristjanssonii 177R1B plasmid pCALKR01 [FIRMICUTES] (CP002327) circular 15,970 35.8 19 18 - - - 1 genome Caldicellulosiruptor kronotskyensis 2002 chromosome [FIRMICUTES] (CP002330) circular 2,843,785 35.1 2,602 2,470 9 47 2 74 genome Caldicellulosiruptor lactoaceticus 6A chromosome [FIRMICUTES] (CP003001) circular 2,674,809 36.1 2,509 2,276 9 45 2 177 genome Caldicellulosiruptor obsidiansis OB47 chromosome [FIRMICUTES] (CP002164) circular 2,532,343 35.2 2,349 2,179 9 46 2 113 genome

14 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Caldicellulosiruptor owensensis OL chromosome [FIRMICUTES] (CP002216) circular 2,428,903 35.4 2,292 2,142 9 47 2 92 genome Caldicellulosiruptor saccharolyticus DSM 8903 chromosome [FIRMICUTES] (CP000679) circular 2,970,275 35.3 2,825 2,628 9 46 2 139 genome Caldilinea aerophila DSM 14535 = NBRC 104270 chromosome [CHLOROFLEXI] (AP012337) circular 5,144,873 58.8 4,095 3,954 6 47 1 87 genome exile AZM16c01 chromosome [CALDISERICA] (AP012051) circular 1,558,103 35.4 1,550 1,481 3 46 3 16 genome Calditerrivibrio nitroreducens DSM 19672 chromosome [DEFERRIBACTERES] (CP002347) circular 2,157,835 35.8 2,092 2,030 6 40 2 14 genome Calditerrivibrio nitroreducens DSM 19672 plasmid pCALNI01 [DEFERRIBACTERES] (CP002348) circular 58,717 31.1 56 53 - - - 3 genome Campylobacter coli plasmid p3384 [PROTEOBACTERIA] (AY948116) circular 3,316 31.2 3 3 - - - - plasmid Campylobacter coli plasmid pCC31 [PROTEOBACTERIA] (AY394560) circular 44,707 29.8 50 50 - - - - plasmid Campylobacter coli RM2228 plasmid pCC2228-1 [PROTEOBACTERIA] (DQ518170) circular 1,307 34.6 1 1 - - - - plasmid Campylobacter coli RM2228 plasmid pCC2228-2 [PROTEOBACTERIA] (DQ518171) circular 3,303 31.6 3 3 - - - - plasmid Campylobacter coli RM2228 plasmid pCC2228-3 [PROTEOBACTERIA] (DQ518172) circular 4,276 30.9 3 3 - - - - plasmid Campylobacter concisus 13826 chromosome [PROTEOBACTERIA] (CP000792) circular 2,052,007 39.4 2,062 1,983 9 46 1 23 genome Campylobacter concisus 13826 plasmid pCCON16 [PROTEOBACTERIA] (CP000794) circular 16,457 33.5 23 23 - - - - genome Campylobacter concisus 13826 plasmid pCCON31 [PROTEOBACTERIA] (CP000793) circular 30,949 31.6 29 29 - - - - genome Campylobacter curvus 525.92 chromosome [PROTEOBACTERIA] (CP000767) circular 1,971,264 44.5 1,979 1,896 9 46 3 25 genome Campylobacter fetus fetus 82-40 chromosome [PROTEOBACTERIA] (CP000487) circular 1,773,615 33.3 1,776 1,706 9 43 2 16 genome Campylobacter fetus venerealis plasmid pCFV108 [PROTEOBACTERIA] (EF050075) circular 3,724 28.3 4 4 - - - - plasmid Campylobacter hominis ATCC BAA-381 chromosome [PROTEOBACTERIA] (CP000776) circular 1,711,273 31.7 1,670 1,582 9 44 4 31 genome Campylobacter hominis ATCC BAA-381 plasmid pCH4 [PROTEOBACTERIA] (CP000775) circular 3,678 34.1 3 3 - - - - genome Campylobacter jejuni doylei 269.97 chromosome [PROTEOBACTERIA] (CP000768) circular 1,845,106 30.6 1,961 1,754 9 44 3 151 genome Campylobacter jejuni jejuni 81-176 chromosome [PROTEOBACTERIA] (CP000538) circular 1,616,554 30.6 1,673 1,584 9 44 2 34 genome Campylobacter jejuni jejuni 81-176 plasmid pTet [PROTEOBACTERIA] (AY394561) circular 45,205 29.1 49 49 - - - - plasmid Campylobacter jejuni jejuni 81-176 plasmid pTet [PROTEOBACTERIA] (AY714214) circular 45,210 29.1 44 44 - - - - plasmid Campylobacter jejuni jejuni 81-176 plasmid pTet [PROTEOBACTERIA] (CP000549) linear 45,025 29.1 50 50 - - - - genome Campylobacter jejuni jejuni 81-176 plasmid pVir [PROTEOBACTERIA] (AF226280) circular 37,468 25.9 54 52 - - - 2 plasmid Campylobacter jejuni jejuni 81-176 plasmid pVir [PROTEOBACTERIA] (CP000550) circular 37,473 25.9 47 46 - - - 1 genome Campylobacter jejuni jejuni 81116 chromosome [PROTEOBACTERIA] (CP000814) circular 1,628,115 30.5 1,685 1,604 9 44 2 26 genome Campylobacter jejuni jejuni IA3902 chromosome [PROTEOBACTERIA] (CP001876) circular 1,635,045 30.6 1,713 1,638 9 44 3 19 genome Campylobacter jejuni jejuni IA3902 plasmid pVir [PROTEOBACTERIA] (CP001877) circular 37,174 25.9 48 48 - - - - genome Campylobacter jejuni jejuni ICDCCJ07001 chromosome [PROTEOBACTERIA] (CP002029) circular 1,664,840 30.6 1,632 1,494 9 44 - 85 genome Campylobacter jejuni jejuni ICDCCJ07001 plasmid pTet [PROTEOBACTERIA] (CP002030) circular 44,084 28.7 37 37 - - - - genome Campylobacter jejuni jejuni M1 chromosome [PROTEOBACTERIA] (CP001900) circular 1,616,648 30.6 1,671 1,556 9 44 1 61 genome Campylobacter jejuni jejuni NCTC 11168 = ATCC 700819 chromosome [PROTEOBACTERIA] (AL111168) circular 1,641,481 30.5 1,668 1,572 9 43 4 40 genome Campylobacter jejuni jejuni NCTC 11168-BN148 chromosome [PROTEOBACTERIA] (HE978252) circular 1,641,481 30.5 1,729 1,658 9 44 2 16 genome Campylobacter jejuni jejuni PT14 chromosome [PROTEOBACTERIA] (CP003871) circular 1,635,301 30.5 1,705 1,629 9 41 1 25 genome Campylobacter jejuni jejuni S3 chromosome [PROTEOBACTERIA] (CP001960) circular 1,681,364 30.5 1,789 1,684 9 44 1 51 genome Campylobacter jejuni jejuni S3 plasmid pTet [PROTEOBACTERIA] (CP001961) circular 43,222 29.0 45 42 - - - 3 genome Campylobacter jejuni plasmid pCJ01 [PROTEOBACTERIA] (AF301164) linear 3,212 33.5 4 4 - - - - plasmid Campylobacter jejuni plasmid pCJ1170 [PROTEOBACTERIA] (DQ518173) circular 4,381 30.8 3 3 - - - - plasmid Campylobacter jejuni plasmid pCJ419 [PROTEOBACTERIA] (AY256846) circular 4,013 30.2 4 4 - - - - plasmid Campylobacter jejuni RM1221 chromosome [PROTEOBACTERIA] (CP000025) circular 1,777,831 30.3 1,898 1,783 9 44 4 58 genome Campylobacter lari plasmid pCL300 [PROTEOBACTERIA] (AB211496) circular 3,634 28.7 3 3 - - - - plasmid Campylobacter lari plasmid pUPTC237 [PROTEOBACTERIA] (AB256957) circular 3,828 29.5 4 4 - - - - plasmid Campylobacter lari RM2100 chromosome [PROTEOBACTERIA] (CP000932) circular 1,525,460 29.7 1,570 1,492 9 46 2 21 genome Campylobacter lari RM2100 megaplasmid pCL2100 [PROTEOBACTERIA] (CP000933) circular 46,201 26.9 44 42 - - - 2 genome Candidatus Accumulibacter phosphatis clade IIA str. UW-1 chromosome [PROTEOBACTERIA] (CP001715) circular 5,058,518 64.1 4,441 4,280 6 49 2 104 genome Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01 [PROTEOBACTERIA] (CP001716) circular 167,595 61.6 153 147 - - - 6 genome Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph02 [PROTEOBACTERIA] (CP001717) circular 42,325 60.7 39 38 - - - 1 genome Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph03 [PROTEOBACTERIA] (CP001718) circular 37,695 59.3 42 37 - - - 5 genome Candidatus Amoebophilus asiaticus 5a2 chromosome [BACTEROIDETES] (CP001102) circular 1,884,364 35.0 1,492 1,394 3 35 2 58 genome Candidatus Arthromitus sp. SFB--Japan chromosome [FIRMICUTES] (AP012202) circular 1,620,005 28.3 1,560 1,481 18 39 1 21 genome Candidatus Arthromitus sp. SFB-mouse-Yit chromosome [FIRMICUTES] (AP012209) circular 1,586,397 28.1 1,520 1,459 15 38 1 7 genome Candidatus Arthromitus sp. SFB-rat-Yit chromosome [FIRMICUTES] (AP012210) circular 1,515,556 28.0 1,427 1,347 16 39 1 24 genome Candidatus Atelocyanobacterium thalassa ALOHA chromosome [CYANOBACTERIA] (CP001842) circular 1,443,806 31.1 1,204 1,132 6 37 1 28 genome Candidatus Azobacteroides pseudotrichonymphae gv. CFP2 chromosome [BACTEROIDETES] (AP010656) circular 1,114,206 32.7 900 847 4 38 1 10 genome Candidatus Azobacteroides pseudotrichonymphae gv. CFP2 plasmid pCFPG1 [BACTEROIDETES] (AP010657) circular 37,560 36.0 46 45 - - - 1 genome Candidatus Azobacteroides pseudotrichonymphae gv. CFP2 plasmid pCFPG2 [BACTEROIDETES] (AP010658) circular 37,111 35.0 40 40 - - - - genome Candidatus Azobacteroides pseudotrichonymphae gv. CFP2 plasmid pCFPG3 [BACTEROIDETES] (AP010659) circular 31,893 35.6 36 36 - - - - genome Candidatus Baumannia cicadellinicola Hc (Homalodisca coagulata) chromosome [PROTEOBACTERIA] (CP000238) linear 686,194 33.2 648 591 6 39 2 10 genome Candidatus Blochmannia floridanus chromosome [PROTEOBACTERIA] (BX248583) circular 705,557 27.4 628 582 3 37 2 4 genome Candidatus Blochmannia pennsylvanicus BPEN chromosome [PROTEOBACTERIA] (CP000016) circular 791,654 29.6 652 604 3 39 2 4 genome Candidatus Blochmannia vafer BVAF chromosome [PROTEOBACTERIA] (CP002189) circular 722,585 27.5 626 578 3 34 2 9 genome Candidatus Carsonella ruddii PV chromosome [PROTEOBACTERIA] (AP009180) circular 159,662 16.6 213 182 3 28 - - genome Candidatus Cloacamonas acidaminovorans chromosome [Candidate division WWE1] (CU466930) circular 2,246,820 37.9 1,793 1,705 6 46 2 34 genome Candidatus Desulforudis audaxviator MP104C chromosome [FIRMICUTES] (CP000860) circular 2,349,476 60.8 2,266 2,167 6 45 1 47 genome Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) chromosome [PROTEOBACTERIA] (CP001277) circular 2,110,331 40.3 2,065 1,861 9 42 1 151 genome Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid pHD5AT [PROTEOBACTERIA] (CP001278) circular 59,032 45.3 64 58 - - - 6 genome Candidatus Hodgkinia cicadicola Dsem chromosome [PROTEOBACTERIA] (CP001226) circular 143,795 58.4 188 169 3 15 - - genome Candidatus Koribacter versatilis Ellin345 chromosome [ACIDOBACTERIA] (CP000360) circular 5,650,368 58.4 4,972 4,860 3 46 3 60 genome Candidatus Liberibacter asiaticus psy62 chromosome [PROTEOBACTERIA] (CP001677) circular 1,227,328 36.5 1,100 1,016 9 44 1 30 genome Candidatus Liberibacter solanacearum CLso-ZC1 chromosome [PROTEOBACTERIA] (CP002371) circular 1,258,278 35.2 1,148 1,038 9 45 1 55 genome Candidatus Methylomirabilis oxyfera chromosome [Candidate division NC10] (FP565575) circular 2,752,854 58.6 3,146 3,072 3 47 4 20 genome Candidatus Midichloria mitochondrii IricVA chromosome [PROTEOBACTERIA] (CP002130) circular 1,183,732 36.6 1,246 1,161 3 35 1 46 genome Candidatus Moranella endobia PCIT chromosome [PROTEOBACTERIA] (CP002243) circular 538,294 43.5 472 411 5 41 1 14 genome Candidatus Pelagibacter sp. IMCC9063 chromosome [PROTEOBACTERIA] (CP002511) circular 1,284,727 31.7 1,378 1,292 3 31 1 51 genome Candidatus Pelagibacter ubique HTCC1062 chromosome [PROTEOBACTERIA] (CP000084) circular 1,308,759 29.7 1,370 1,333 3 32 1 1 genome Candidatus Phytoplasma australiense chromosome [TENERICUTES] (AM422018) circular 879,959 27.4 819 699 6 34 - 80 genome Candidatus Phytoplasma mali chromosome [TENERICUTES] (CU469464) linear 601,943 21.4 541 500 6 32 - 3 genome Candidatus Protochlamydia amoebophila UWE25 chromosome [] (BX908798) circular 2,414,465 34.7 1,938 1,855 7 35 1 40 genome Candidatus Puniceispirillum marinum IMCC1322 chromosome [PROTEOBACTERIA] (CP001751) circular 2,753,527 48.9 2,602 2,538 3 36 1 24 genome Candidatus Regiella insecticola LSR1 plasmid pRILSR1 [PROTEOBACTERIA] (CM000957) circular 32,491 44.7 41 40 - - - 1 plasmid Candidatus Rickettsia amblyommii AaR/SC plasmid pRAM18 [PROTEOBACTERIA] (GU322808) circular 18,344 32.2 20 16 - - - 4 plasmid Candidatus Rickettsia amblyommii AaR/SC plasmid pRAM23 [PROTEOBACTERIA] (GU322807) circular 22,852 33.4 22 12 - - - 10 plasmid Candidatus Rickettsia amblyommii AaR/SC plasmid pRAM32 [PROTEOBACTERIA] (CP002642) circular 31,972 34.0 22 17 - - - 5 plasmid Candidatus Riesia pediculicola USDA chromosome [PROTEOBACTERIA] (CP001085) linear 574,390 28.5 517 465 6 32 2 12 genome Candidatus Riesia pediculicola USDA plasmid pPAN [PROTEOBACTERIA] (CP001086) circular 7,737 35.2 10 10 - - - - genome Candidatus Ruthia magnifica Cm (Calyptogena magnifica) chromosome [PROTEOBACTERIA] (CP000488) circular 1,160,782 34.0 1,078 1,022 3 36 3 14 genome

15 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Candidatus Solibacter usitatus Ellin6076 chromosome [ACIDOBACTERIA] (CP000473) circular 9,965,640 61.9 8,117 7,974 6 51 3 83 genome Candidatus Sulcia muelleri CARI chromosome [BACTEROIDETES] (CP002163) circular 276,511 21.1 288 246 3 29 2 2 genome Candidatus Sulcia muelleri DMIN chromosome [BACTEROIDETES] (CP001981) circular 243,933 22.5 261 226 3 31 1 - genome Candidatus Sulcia muelleri GWSS chromosome [BACTEROIDETES] (CP000770) circular 245,530 22.4 264 227 3 31 2 1 genome Candidatus Sulcia muelleri SMDSEM chromosome [BACTEROIDETES] (CP001605) circular 276,984 22.6 279 242 3 28 2 2 genome Candidatus Tremblaya princeps PCIT chromosome [PROTEOBACTERIA] (CP002244) circular 138,927 58.8 160 121 6 12 1 22 genome Candidatus Tremblaya princeps PCVAL chromosome [PROTEOBACTERIA] (CP002918) circular 138,931 58.8 155 116 6 13 1 24 genome Candidatus Vesicomyosocius okutanii HA chromosome [PROTEOBACTERIA] (AP009247) circular 1,022,154 31.6 988 948 3 35 1 1 genome Candidatus Zinderia insecticola CARI chromosome [PROTEOBACTERIA] (CP002161) circular 208,564 13.5 236 206 3 25 1 - genome Capnocytophaga canimorsus Cc5 chromosome [BACTEROIDETES] (CP002113) circular 2,571,406 36.1 2,296 2,188 9 46 12 41 genome Capnocytophaga canimorsus str. 7 plasmid pCC7 [BACTEROIDETES] (EU741249) circular 4,579 31.1 4 4 - - - - plasmid Capnocytophaga ochracea DSM 7271 chromosome [BACTEROIDETES] (CP001632) circular 2,612,925 39.6 2,216 2,128 12 47 2 27 genome Carboxydothermus hydrogenoformans Z-2901 chromosome [FIRMICUTES] (CP000141) circular 2,401,520 42.0 2,495 2,406 12 49 2 26 genome Cardinium endosymbiont cEper1 (Encarsia pergandiella) chromosome [BACTEROIDETES] (HE983995) circular 887,130 36.6 782 710 3 37 1 31 genome Cardinium endosymbiont cEper1 (Encarsia pergandiella) plasmid pCher [BACTEROIDETES] (HE983996) circular 57,800 31.5 54 51 - - - 3 genome Carnobacterium maltaromaticum LMA28 chromosome [FIRMICUTES] (HE999757) circular 3,650,416 34.5 3,456 3,272 19 59 - 106 genome Carnobacterium sp. 17-4 chromosome [FIRMICUTES] (CP002563) circular 2,635,294 35.3 2,506 2,393 25 67 - 21 genome Carnobacterium sp. 17-4 plasmid pCAR50 [FIRMICUTES] (CP002564) circular 50,105 31.5 51 51 - - - - genome Catenulispora acidiphila DSM 44928 chromosome [ACTINOBACTERIA] (CP001700) circular 10,467,782 69.8 8,931 8,579 9 58 2 283 genome Caulobacter crescentus CB15 chromosome [PROTEOBACTERIA] (AE005673) circular 4,016,947 67.2 3,819 3,737 6 51 1 24 genome Caulobacter crescentus NA1000 chromosome [PROTEOBACTERIA] (CP001340) circular 4,042,929 67.2 4,084 3,885 6 51 143 1 genome Caulobacter segnis ATCC 21756 chromosome [PROTEOBACTERIA] (CP002008) circular 4,655,622 67.7 4,274 4,075 6 52 2 139 genome Caulobacter sp. K31 chromosome [PROTEOBACTERIA] (CP000927) circular 5,477,872 67.5 5,077 4,961 6 49 2 59 genome Caulobacter sp. K31 plasmid pCAUL01 [PROTEOBACTERIA] (CP000928) circular 233,649 67.0 209 206 - - - 3 genome Caulobacter sp. K31 plasmid pCAUL02 [PROTEOBACTERIA] (CP000929) circular 177,878 64.3 164 153 - - - 11 genome Cellulomonas fimi ATCC 484 chromosome [ACTINOBACTERIA] (CP002666) circular 4,266,344 74.7 3,845 3,725 6 45 2 67 genome Cellulomonas flavigena DSM 20109 chromosome [ACTINOBACTERIA] (CP001964) circular 4,123,179 74.3 3,732 3,611 6 45 2 - genome Cellulomonas gilvus ATCC 13127 chromosome [ACTINOBACTERIA] (CP002665) circular 3,526,441 73.8 3,225 3,117 6 45 2 55 genome Cellulophaga algicola DSM 14237 chromosome [BACTEROIDETES] (CP002453) circular 4,888,353 33.8 4,248 4,131 15 44 2 56 genome Cellulophaga lytica DSM 7489 chromosome [BACTEROIDETES] (CP002534) circular 3,765,936 32.1 3,311 3,237 12 40 2 20 genome Cellvibrio japonicus Ueda107 chromosome [PROTEOBACTERIA] (CP000934) circular 4,576,573 52.0 3,679 3,577 9 48 2 43 genome Chelativorans sp. BNC1 chromosome [PROTEOBACTERIA] (CP000390) circular 4,412,446 61.1 4,155 4,033 6 49 3 64 genome Chelativorans sp. BNC1 plasmid1 [PROTEOBACTERIA] (CP000389) circular 343,931 61.7 334 314 - 1 - 19 genome Chelativorans sp. BNC1 plasmid2 [PROTEOBACTERIA] (CP000391) circular 131,247 60.2 119 115 - - - 4 genome Chelativorans sp. BNC1 plasmid3 [PROTEOBACTERIA] (CP000392) circular 47,561 61.5 49 47 - - - 2 genome Chitinophaga pinensis DSM 2588 chromosome [BACTEROIDETES] (CP001699) circular 9,127,347 45.2 7,227 7,063 18 72 2 72 genome Chlamydia abortus S26/3 chromosome [CHLAMYDIAE] (CR848038) circular 1,144,377 39.9 1,006 930 3 38 1 34 genome Chlamydia caviae GPIC chromosome [CHLAMYDIAE] (AE015925) circular 1,173,390 39.2 1,022 966 3 38 1 14 genome Chlamydia caviae GPIC plasmid pCpGP1 [CHLAMYDIAE] (AE015926) circular 7,966 33.7 9 8 - - - 1 genome Chlamydia felis Fe/C-56 chromosome [CHLAMYDIAE] (AP006861) circular 1,166,239 39.4 1,015 961 3 38 1 12 genome Chlamydia felis Fe/C-56 plasmid pCfe1 [CHLAMYDIAE] (AP006862) circular 7,552 33.9 8 8 - - - - genome Chlamydia muridarum Nigg chromosome [CHLAMYDIAE] (AE002160) circular 1,072,950 40.3 937 892 6 37 1 1 genome Chlamydia muridarum Nigg plasmid pMoPn [CHLAMYDIAE] (AE002162) circular 7,501 35.7 8 8 - - - - genome Chlamydia pecorum E58 chromosome [CHLAMYDIAE] (CP002608) circular 1,106,197 41.1 980 931 3 38 1 7 genome Chlamydia pneumoniae AR39 chromosome [CHLAMYDIAE] (AE002161) circular 1,229,853 40.6 1,165 1,110 3 38 2 12 genome Chlamydia pneumoniae CWL029 chromosome [CHLAMYDIAE] (AE001363) circular 1,230,230 40.6 1,091 1,029 3 38 2 19 genome Chlamydia pneumoniae J138 chromosome [CHLAMYDIAE] (BA000008) circular 1,226,565 40.6 1,113 1,060 3 38 1 11 genome Chlamydia pneumoniae LPCoLN chromosome [CHLAMYDIAE] (CP001713) circular 1,241,020 40.5 1,102 1,006 3 38 1 54 genome Chlamydia pneumoniae LPCoLN plasmid unnamed [CHLAMYDIAE] (CP001714) circular 7,530 33.0 8 8 - - - - genome Chlamydia pneumoniae TW-183 chromosome [CHLAMYDIAE] (AE009440) circular 1,225,935 40.6 1,109 1,059 3 38 1 8 genome Chlamydia psittaci 01DC11 chromosome [CHLAMYDIAE] (CP002805) circular 1,172,197 39.1 1,019 965 3 38 1 12 genome Chlamydia psittaci 01DC12 chromosome [CHLAMYDIAE] (HF545614) circular 1,171,011 39.1 1,011 958 3 38 1 11 genome Chlamydia psittaci 01DC12 plasmid p01DC12 [CHLAMYDIAE] (HF545615) circular 7,553 32.9 8 8 - - - - genome Chlamydia psittaci 02DC15 chromosome [CHLAMYDIAE] (CP002806) circular 1,172,182 39.1 1,021 972 3 38 1 7 genome Chlamydia psittaci 08DC60 chromosome [CHLAMYDIAE] (CP002807) circular 1,172,032 39.1 1,018 963 3 38 1 13 genome Chlamydia psittaci 6BC chromosome [CHLAMYDIAE] (CP002549) circular 1,171,660 39.1 1,013 968 3 38 1 3 genome Chlamydia psittaci 6BC chromosome [CHLAMYDIAE] (CP002586) circular 1,171,667 39.1 1,018 971 3 38 1 5 genome Chlamydia psittaci 6BC plasmid p6BC [CHLAMYDIAE] (CP002550) circular 7,553 32.9 8 8 - - - - genome Chlamydia psittaci 6BC plasmid pCps6BC [CHLAMYDIAE] (CP002587) circular 7,553 32.9 8 8 - - - - genome Chlamydia psittaci 84/55 chromosome [CHLAMYDIAE] (CP003790) circular 1,172,064 39.1 1,037 893 3 38 1 102 genome Chlamydia psittaci 84/55 plasmid pcp8455 [CHLAMYDIAE] (CP003812) circular 7,487 32.8 8 8 - - - - genome Chlamydia psittaci C19/98 chromosome [CHLAMYDIAE] (CP002804) circular 1,169,374 39.0 1,016 968 3 38 1 6 genome Chlamydia psittaci CP3 chromosome [CHLAMYDIAE] (CP003797) circular 1,168,150 39.1 1,028 901 3 38 1 85 genome Chlamydia psittaci CP3 plasmid pcpCP3 [CHLAMYDIAE] (CP003813) circular 7,552 32.9 8 8 - - - - genome Chlamydia psittaci GR9 chromosome [CHLAMYDIAE] (CP003791) circular 1,147,152 39.1 1,010 949 3 38 1 19 genome Chlamydia psittaci M56 chromosome [CHLAMYDIAE] (CP003795) circular 1,161,385 38.8 1,008 946 3 38 1 20 genome Chlamydia psittaci M56 plasmid pcpM56 [CHLAMYDIAE] (CP003814) circular 7,553 32.9 8 8 - - - - genome Chlamydia psittaci MN chromosome [CHLAMYDIAE] (CP003792) circular 1,168,490 39.1 1,019 956 3 38 1 21 genome Chlamydia psittaci MN plasmid pcpMN [CHLAMYDIAE] (CP003815) circular 7,491 32.9 8 6 - - - 2 genome Chlamydia psittaci NJ1 chromosome [CHLAMYDIAE] (CP003798) circular 1,161,434 39.0 1,015 955 3 38 1 18 genome Chlamydia psittaci NJ1 plasmid pcpNJ1 [CHLAMYDIAE] (CP003816) circular 7,552 32.8 8 8 - - - - genome Chlamydia psittaci RD1 chromosome [CHLAMYDIAE] (FQ482149) circular 1,164,076 39.1 1,001 943 5 36 1 16 genome Chlamydia psittaci RD1 plasmid pRD1 [CHLAMYDIAE] (FQ482150) circular 7,553 32.9 8 8 - - - - genome Chlamydia psittaci VS225 chromosome [CHLAMYDIAE] (CP003793) circular 1,157,385 39.0 1,025 898 3 38 1 85 genome Chlamydia psittaci VS225 plasmid pcpVS225 [CHLAMYDIAE] (CP003817) circular 7,553 32.9 8 8 - - - - genome Chlamydia psittaci WC chromosome [CHLAMYDIAE] (CP003796) circular 1,172,265 39.1 1,026 963 3 38 1 21 genome Chlamydia psittaci WC plasmid pcpWC [CHLAMYDIAE] (CP003818) circular 7,553 32.9 8 8 - - - - genome Chlamydia psittaci WS/RT/E30 chromosome [CHLAMYDIAE] (CP003794) circular 1,140,789 39.0 1,008 934 3 38 1 32 genome Chlamydia psittaci WS/RT/E30 plasmid pcpWSRTE30 [CHLAMYDIAE] (CP003819) circular 7,553 32.9 8 8 - - - - genome Chlamydia trachomatis A/HAR-13 chromosome [CHLAMYDIAE] (CP000051) circular 1,044,459 41.3 957 897 6 37 1 16 genome Chlamydia trachomatis A/HAR-13 plasmid pCTA [CHLAMYDIAE] (CP000052) circular 7,510 36.3 8 8 - - - - genome Chlamydia trachomatis A2497 chromosome [CHLAMYDIAE] (CP002401) circular 1,044,326 41.3 956 903 6 37 1 9 genome Chlamydia trachomatis A2497 chromosome [CHLAMYDIAE] (FM872306) circular 1,044,325 41.3 957 904 6 37 1 9 genome Chlamydia trachomatis A2497 plasmid0001 [CHLAMYDIAE] (CP002402) circular 7,480 36.2 8 8 - - - - genome Chlamydia trachomatis B/Jali20/OT chromosome [CHLAMYDIAE] (FM872308) circular 1,044,352 41.3 955 897 6 37 1 14 genome Chlamydia trachomatis B/Jali20/OT plasmid pJALI [CHLAMYDIAE] (FM865438) circular 7,506 36.3 8 8 - - - - plasmid Chlamydia trachomatis B/TZ1A828/OT chromosome [CHLAMYDIAE] (FM872307) circular 1,044,282 41.3 957 905 6 37 1 8 genome

16 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Chlamydia trachomatis B/TZ1A828/OT plasmid pCTB [CHLAMYDIAE] (FM865437) circular 7,502 36.3 8 8 - - - - plasmid Chlamydia trachomatis D-EC chromosome [CHLAMYDIAE] (CP002052) circular 1,042,522 41.3 952 903 6 37 1 5 genome Chlamydia trachomatis D-EC plasmid pCTDEC1 [CHLAMYDIAE] (CP002053) circular 7,493 36.3 8 8 - - - - genome Chlamydia trachomatis D-LC chromosome [CHLAMYDIAE] (CP002054) circular 1,042,520 41.3 951 902 6 37 1 5 genome Chlamydia trachomatis D-LC plasmid pCTDLC1 [CHLAMYDIAE] (CP002055) circular 7,493 36.3 8 8 - - - - genome Chlamydia trachomatis D/UW-3/CX chromosome [CHLAMYDIAE] (AE001273) circular 1,042,519 41.3 935 887 6 37 2 3 genome Chlamydia trachomatis E/11023 chromosome [CHLAMYDIAE] (CP001890) circular 1,043,025 41.3 953 902 6 37 1 7 genome Chlamydia trachomatis E/150 chromosome [CHLAMYDIAE] (CP001886) circular 1,042,996 41.3 955 904 6 37 1 7 genome Chlamydia trachomatis E/SW3 chromosome [CHLAMYDIAE] (HE601801) circular 1,042,903 41.3 954 904 6 37 1 6 genome Chlamydia trachomatis F/SW4 chromosome [CHLAMYDIAE] (HE601804) circular 1,042,736 41.3 953 900 6 37 1 9 genome Chlamydia trachomatis F/SW5 chromosome [CHLAMYDIAE] (HE601805) circular 1,042,743 41.3 955 903 6 37 1 8 genome Chlamydia trachomatis G/11074 chromosome [CHLAMYDIAE] (CP001889) circular 1,042,875 41.3 954 905 6 37 1 5 genome Chlamydia trachomatis G/11222 chromosome [CHLAMYDIAE] (CP001888) circular 1,042,354 41.3 952 904 6 37 1 4 genome Chlamydia trachomatis G/9301 chromosome [CHLAMYDIAE] (CP001930) circular 1,042,811 41.3 953 903 6 37 1 6 genome Chlamydia trachomatis G/9768 chromosome [CHLAMYDIAE] (CP001887) circular 1,042,810 41.3 953 903 6 37 1 6 genome Chlamydia trachomatis G0/86 plasmid pCHL1 [CHLAMYDIAE] (J03321) circular 7,502 36.2 8 8 - - - - plasmid Chlamydia trachomatis L1/440/LN plasmid pLGV440 [CHLAMYDIAE] (X06707) circular 7,500 36.3 8 8 - - - - plasmid Chlamydia trachomatis L2/434/Bu chromosome [CHLAMYDIAE] (AM884176) circular 1,038,842 41.3 937 880 6 37 1 11 genome Chlamydia trachomatis L2/434/Bu plasmid pL2 [CHLAMYDIAE] (AM886278) circular 7,499 36.2 8 8 - - - - plasmid Chlamydia trachomatis L2b/UCH-1/proctitis chromosome [CHLAMYDIAE] (AM884177) circular 1,038,863 41.3 948 899 6 37 1 5 genome Chlamydia trachomatis L2c chromosome [CHLAMYDIAE] (CP002024) circular 1,038,313 41.3 949 900 6 37 1 - genome Chlamydia trachomatis sv. F Sweden5 plasmid pSW5 [CHLAMYDIAE] (FM865442) circular 7,471 36.2 8 8 - - - - plasmid Chlamydia trachomatis sv.E Sweden2 plasmid pSW2 [CHLAMYDIAE] (FM865439) circular 7,169 36.3 8 8 - - - - plasmid Chlamydia trachomatis sv.E Sweden3 plasmid pSW3 [CHLAMYDIAE] (FM865440) circular 7,502 36.3 8 8 - - - - plasmid Chlamydia trachomatis sv.F Sweden4 plasmid pSW4 [CHLAMYDIAE] (FM865441) circular 7,493 36.2 8 8 - - - - plasmid Chlamydia trachomatis Sweden2 chromosome [CHLAMYDIAE] (FN652779) circular 1,042,839 41.3 954 904 6 37 1 6 genome Chlamydia trachomatis UCH-1 plasmid pUCH-1 [CHLAMYDIAE] (AM886279) circular 7,500 36.2 8 8 - - - - plasmid Chloracidobacterium thermophilum B chromosome 1 [ACIDOBACTERIA] (CP002514) circular 2,683,362 61.4 2,221 2,127 3 42 1 48 genome Chloracidobacterium thermophilum B chromosome 2 [ACIDOBACTERIA] (CP002515) circular 1,012,010 61.2 810 777 - 4 - 29 genome Chlorobaculum parvum NCIB 8327 chromosome [CHLOROBI] (CP001099) circular 2,289,249 55.8 2,118 2,037 6 50 2 23 genome Chlorobium chlorochromatii CaD3 chromosome [CHLOROBI] (CP000108) circular 2,572,079 44.3 2,109 2,029 3 45 1 31 genome Chlorobium limicola DSM 245 chromosome [CHLOROBI] (CP001097) circular 2,763,181 51.3 2,530 2,421 6 48 1 54 genome Chlorobium limicola plasmid pCL1 [CHLOROBI] (U77780) circular 14,636 52.8 6 6 - - - - plasmid Chlorobium luteolum DSM 273 chromosome [CHLOROBI] (CP000096) circular 2,364,842 57.3 2,205 2,114 6 48 1 36 genome Chlorobium phaeobacteroides BS1 chromosome [CHLOROBI] (CP001101) circular 2,736,403 48.9 2,541 2,414 6 46 2 73 genome Chlorobium phaeobacteroides DSM 266 chromosome [CHLOROBI] (CP000492) circular 3,133,902 48.4 2,850 2,728 6 47 3 66 genome Chlorobium phaeovibrioides DSM 265 chromosome [CHLOROBI] (CP000607) circular 1,966,858 53.0 1,830 1,765 3 45 3 14 genome Chlorobium tepidum TLS chromosome [CHLOROBI] (AE006470) circular 2,154,946 56.5 2,337 2,245 6 50 6 30 genome Chloroflexus aggregans DSM 9485 chromosome [CHLOROFLEXI] (CP001337) circular 4,684,931 56.4 3,828 3,679 9 47 1 92 genome Chloroflexus aurantiacus J-10-fl chromosome [CHLOROFLEXI] (CP000909) circular 5,258,541 56.7 3,990 3,853 9 49 3 76 genome Chloroflexus sp. Y-400-fl chromosome [CHLOROFLEXI] (CP001364) circular 5,268,950 56.7 4,122 3,989 9 48 2 74 genome Chloroherpeton thalassium ATCC 35110 chromosome [CHLOROBI] (CP001100) circular 3,293,456 45.0 2,843 2,751 3 44 2 43 genome Chromobacterium violaceum ATCC 12472 chromosome [PROTEOBACTERIA] (AE016825) circular 4,751,080 64.8 4,367 4,195 25 98 1 48 genome Chromohalobacter salexigens DSM 3043 chromosome [PROTEOBACTERIA] (CP000285) circular 3,696,649 63.9 3,363 3,233 15 69 3 43 genome Citrobacter freundii plasmid pCTX-M3 [PROTEOBACTERIA] (AF550415) circular 89,468 51.0 104 104 - - - - plasmid Citrobacter koseri ATCC BAA-895 chromosome [PROTEOBACTERIA] (CP000822) circular 4,720,462 53.8 4,377 4,222 22 83 - 50 genome Citrobacter koseri ATCC BAA-895 plasmid pCKO2 [PROTEOBACTERIA] (CP000824) circular 5,601 51.3 8 8 - - - - genome Citrobacter koseri ATCC BAA-895 plasmid pCKO3 [PROTEOBACTERIA] (CP000823) circular 9,294 55.2 11 11 - - - - genome Citrobacter rodentium ICC168 chromosome [PROTEOBACTERIA] (FN543502) circular 5,346,659 54.7 4,987 4,691 22 84 2 187 genome Citrobacter rodentium ICC168 plasmid pCROD1 [PROTEOBACTERIA] (FN543503) circular 54,449 47.2 42 40 - - - 2 genome Citrobacter rodentium ICC168 plasmid pCROD2 [PROTEOBACTERIA] (FN543504) circular 39,265 41.7 49 46 - - - 3 genome Citrobacter rodentium ICC168 plasmid pCROD3 [PROTEOBACTERIA] (FN543505) circular 3,910 51.0 3 3 - - - - genome Citrobacter rodentium plasmid pCRP3 [PROTEOBACTERIA] (AF311902) circular 3,172 46.8 6 6 - - - - plasmid Clavibacter michiganensis michiganensis NCPPB 382 chromosome [ACTINOBACTERIA] (AM711867) circular 3,297,891 72.0 3,007 2,992 6 45 1 16 genome Clavibacter michiganensis michiganensis NCPPB 382 plasmid pCM1 [ACTINOBACTERIA] (AM711865) circular 27,357 67.6 26 25 - - - 1 genome Clavibacter michiganensis michiganensis NCPPB 382 plasmid pCM2 [ACTINOBACTERIA] (AM711866) circular 69,989 66.5 67 66 - - - 1 genome Clavibacter michiganensis sepedonicus chromosome [ACTINOBACTERIA] (AM849034) circular 3,258,645 72.6 3,050 2,888 6 45 1 110 genome Clavibacter michiganensis sepedonicus plasmid pCS1 [ACTINOBACTERIA] (AM849035) circular 50,350 67.5 50 48 - - - 2 genome Clavibacter michiganensis sepedonicus plasmid pCSL1 [ACTINOBACTERIA] (AM849036) circular 94,791 68.8 105 103 - - - 2 genome Clostridium acetobutylicum ATCC 824 chromosome [FIRMICUTES] (AE001437) circular 3,940,880 30.9 3,733 3,602 33 73 1 24 genome Clostridium acetobutylicum ATCC 824 plasmid pSOL1 [FIRMICUTES] (AE001438) circular 192,000 30.9 178 176 - - - - genome Clostridium acetobutylicum DSM 1731 chromosome [FIRMICUTES] (CP002660) circular 3,942,462 30.9 3,829 3,712 33 73 2 9 genome Clostridium acetobutylicum DSM 1731 plasmid pSMBa [FIRMICUTES] (CP002661) circular 191,996 30.9 179 178 - - - 1 genome Clostridium acetobutylicum DSM 1731 plasmid pSMBb [FIRMICUTES] (CP002662) circular 11,123 25.9 8 8 - - - - genome Clostridium acetobutylicum EA 2018 chromosome [FIRMICUTES] (CP002118) circular 3,940,230 30.9 3,831 3,705 33 75 1 17 genome Clostridium acetobutylicum EA 2018 plasmid [FIRMICUTES] (CP002119) circular 191,996 30.9 179 177 - - - 2 genome Clostridium acidurici 9a chromosome [FIRMICUTES] (CP003326) circular 3,105,335 29.9 2,960 2,774 20 81 1 84 genome Clostridium acidurici 9a plasmid pCuri3 [FIRMICUTES] (CP003327) circular 2,913 28.8 3 3 - - - - genome Clostridium beijerinckii NCIMB 8052 chromosome [FIRMICUTES] (CP000721) circular 6,000,632 29.9 5,231 5,023 43 94 4 67 genome Clostridium botulinum A ATCC 19397 chromosome [FIRMICUTES] (CP000726) circular 3,863,450 28.2 3,693 3,552 24 81 2 34 genome Clostridium botulinum A ATCC 3502 chromosome [FIRMICUTES] (AM412317) circular 3,886,916 28.2 3,767 3,572 27 80 7 77 genome Clostridium botulinum A ATCC 3502 plasmid pBOT3502 [FIRMICUTES] (AM412318) circular 16,344 26.8 19 18 - - - 1 genome Clostridium botulinum A Hall chromosome [FIRMICUTES] (CP000727) circular 3,760,560 28.2 3,499 3,332 24 81 7 55 genome Clostridium botulinum A2 Kyoto chromosome [FIRMICUTES] (CP001581) circular 4,155,278 28.2 3,944 3,742 27 81 4 90 genome Clostridium botulinum A3 Loch Maree chromosome [FIRMICUTES] (CP000962) circular 3,992,906 28.3 3,723 3,540 27 81 2 73 genome Clostridium botulinum A3 Loch Maree plasmid pCLK [FIRMICUTES] (CP000963) circular 266,785 25.6 308 304 - - 2 2 genome Clostridium botulinum B Eklund 17B chromosome [FIRMICUTES] (CP001056) circular 3,800,327 27.5 3,455 3,299 34 77 4 41 genome Clostridium botulinum B Eklund 17B plasmid pCLL [FIRMICUTES] (CP001057) circular 47,642 25.0 50 49 - - - 1 genome Clostridium botulinum B1 Okra chromosome [FIRMICUTES] (CP000939) circular 3,958,233 28.3 3,751 3,586 27 82 3 53 genome Clostridium botulinum B1 Okra plasmid pCLD [FIRMICUTES] (CP000940) circular 148,780 25.4 179 179 - - - - genome Clostridium botulinum Ba4 str. 657 chromosome [FIRMICUTES] (CP001083) circular 3,977,794 28.2 3,845 3,662 27 82 3 71 genome Clostridium botulinum Ba4 str. 657 plasmid pCLJ [FIRMICUTES] (CP001081) circular 270,022 25.6 279 268 - - 1 10 genome Clostridium botulinum Ba4 str. 657 plasmid pCLJ2 [FIRMICUTES] (CP001082) circular 9,953 24.1 9 9 - - - - genome Clostridium botulinum BKT015925 chromosome [FIRMICUTES] (CP002410) circular 2,773,157 28.5 2,576 2,435 30 85 1 25 genome Clostridium botulinum BKT015925 plasmid p1BKT015925 [FIRMICUTES] (CP002411) circular 203,287 26.5 209 206 - 1 - 2 genome Clostridium botulinum BKT015925 plasmid p2BKT015925 [FIRMICUTES] (CP002412) circular 98,732 26.1 93 89 - - - 4 genome Clostridium botulinum BKT015925 plasmid p3BKT015925 [FIRMICUTES] (CP002413) circular 80,365 26.8 84 78 - - - 6 genome

17 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Clostridium botulinum BKT015925 plasmid p4BKT015925 [FIRMICUTES] (CP002414) circular 39,648 28.1 47 45 - - - 2 genome Clostridium botulinum D str. 1873 plasmid pCLG1 [FIRMICUTES] (CP001659) circular 107,690 26.7 128 124 - - - 4 plasmid Clostridium botulinum D str. 1873 plasmid pCLG2 [FIRMICUTES] (CP001660) circular 54,152 25.3 49 48 - - - 1 plasmid Clostridium botulinum E3 Alaska E43 chromosome [FIRMICUTES] (CP001078) circular 3,659,644 27.4 3,272 3,126 34 79 3 30 genome Clostridium botulinum F Langeland chromosome [FIRMICUTES] (CP000728) circular 3,995,387 28.3 3,766 3,604 27 81 2 52 genome Clostridium botulinum F Langeland plasmid pCLI [FIRMICUTES] (CP000729) circular 17,531 26.1 20 20 - - - - genome Clostridium botulinum F str. 230613 chromosome [FIRMICUTES] (CP002011) circular 3,993,083 28.3 3,764 3,322 27 71 1 343 genome Clostridium botulinum F str. 230613 plasmid pCBF [FIRMICUTES] (CP002012) circular 17,531 26.1 20 20 - - - - genome Clostridium botulinum H04402 065 chromosome [FIRMICUTES] (FR773526) circular 3,919,740 28.2 3,698 3,382 27 72 1 216 genome Clostridium botulinum plasmid pC2C203U28 [FIRMICUTES] (AP010934) circular 106,981 26.7 122 122 - - - - plasmid Clostridium cellulolyticum H10 chromosome [FIRMICUTES] (CP001348) circular 4,068,724 37.4 3,508 3,348 24 63 2 71 genome Clostridium cellulovorans 743B chromosome [FIRMICUTES] (CP002160) circular 5,262,222 31.2 4,384 4,230 28 80 2 44 genome Clostridium clariflavum DSM 19732 chromosome [FIRMICUTES] (CP003065) circular 4,897,678 35.7 4,154 3,912 18 60 12 152 genome Clostridium kluyveri DSM 555 chromosome [FIRMICUTES] (CP000673) circular 3,964,618 32.0 3,824 3,712 20 60 1 31 genome Clostridium kluyveri DSM 555 plasmid pCKL555A [FIRMICUTES] (CP000674) circular 59,182 33.4 69 69 - - - - genome Clostridium kluyveri NBRC 12016 chromosome [FIRMICUTES] (AP009049) circular 3,896,121 32.0 3,730 3,618 20 60 1 31 genome Clostridium kluyveri NBRC 12016 plasmid pCKL1 [FIRMICUTES] (AP009050) circular 59,182 33.4 69 69 - - - - genome Clostridium lentocellum DSM 5427 chromosome [FIRMICUTES] (CP002582) circular 4,714,237 34.3 4,273 4,068 36 105 2 62 genome Clostridium ljungdahlii DSM 13528 chromosome [FIRMICUTES] (CP001666) circular 4,630,065 31.1 4,234 4,081 27 70 1 55 genome Clostridium novyi NT chromosome [FIRMICUTES] (CP000382) circular 2,547,720 28.9 2,381 2,237 30 81 2 31 genome Clostridium perfringens ATCC 13124 chromosome [FIRMICUTES] (CP000246) circular 3,256,683 28.4 2,932 2,782 24 92 2 32 genome Clostridium perfringens plasmid pBCNF5603 [FIRMICUTES] (AB189671) circular 36,695 25.4 36 36 - - - - plasmid Clostridium perfringens plasmid pCP8533etx [FIRMICUTES] (AB444205) circular 64,753 25.9 63 63 - - - - plasmid Clostridium perfringens plasmid pCPF4969 [FIRMICUTES] (AB236336) circular 70,480 26.6 62 60 - - - 2 plasmid Clostridium perfringens plasmid pCPF5603 [FIRMICUTES] (AB236337) circular 75,268 25.5 73 73 - - - - plasmid Clostridium perfringens plasmid pCPPB-1 [FIRMICUTES] (AB604032) circular 67,479 26.0 71 71 - - - - plasmid Clostridium perfringens plasmid pCW3 [FIRMICUTES] (DQ366035) circular 47,263 27.6 51 51 - - - - plasmid Clostridium perfringens SM101 chromosome [FIRMICUTES] (CP000312) circular 2,897,393 28.2 2,660 2,546 - 94 - 8 genome Clostridium perfringens SM101 phage phiSM101 [FIRMICUTES] (CP000315) circular 38,092 28.1 54 53 - 1 - - genome Clostridium perfringens SM101 plasmid pSM101A [FIRMICUTES] (CP000313) circular 12,397 26.7 10 10 - - - - genome Clostridium perfringens SM101 plasmid pSM101B [FIRMICUTES] (CP000314) circular 12,206 25.8 11 10 - - - - genome Clostridium perfringens str. 13 chromosome [FIRMICUTES] (BA000016) circular 3,031,430 28.6 2,721 2,534 30 95 1 61 genome Clostridium perfringens str. 13 plasmid pCP13 [FIRMICUTES] (AP003515) circular 54,310 25.5 56 53 - - - 3 genome Clostridium saccharolyticum WM1 chromosome [FIRMICUTES] (CP002109) circular 4,662,871 45.0 4,308 4,139 18 68 2 81 genome Clostridium sp. BNL1100 chromosome [FIRMICUTES] (CP003259) circular 4,613,747 37.3 3,978 3,846 24 61 2 45 genome Clostridium sp. MCF-1 plasmid pMCF-1 [FIRMICUTES] (U59416) circular 2,450 39.3 1 1 - - - - plasmid Clostridium sp. SY8519 chromosome [FIRMICUTES] (AP012212) circular 2,835,737 50.7 2,620 2,489 12 53 1 65 genome Clostridium sticklandii DSM 519 chromosome [FIRMICUTES] (FP565809) circular 2,715,461 33.3 2,625 2,476 18 59 39 33 genome Clostridium tetani E88 chromosome [FIRMICUTES] (AE015927) circular 2,799,251 28.7 2,722 2,620 18 54 1 29 genome Clostridium tetani E88 plasmid pE88 [FIRMICUTES] (AF528097) circular 74,082 24.5 88 86 - - - 2 genome Collimonas fungivorans Ter331 chromosome [PROTEOBACTERIA] (CP002745) circular 5,186,898 59.6 4,619 4,495 9 53 1 61 genome Collimonas fungivorans Ter331 plasmid pTer331 [PROTEOBACTERIA] (EU315244) circular 40,457 60.6 44 44 - - - - plasmid Colwellia psychrerythraea 34H chromosome [PROTEOBACTERIA] (CP000083) circular 5,373,180 38.0 4,549 4,393 28 88 2 37 genome Comamonas testosteroni CNB-1 plasmid pCNB [PROTEOBACTERIA] (EF079106) circular 91,181 63.4 92 92 - - - - plasmid Comamonas testosteroni CNB-2 chromosome [PROTEOBACTERIA] (CP001220) circular 5,373,644 61.4 4,880 4,683 9 80 1 107 genome Comamonas testosteroni plasmid pI2 [PROTEOBACTERIA] (JF274989) circular 84,204 64.8 85 85 - - - - plasmid Comamonas testosteroni plasmid pPT1 [PROTEOBACTERIA] (AF076997) linear 15,398 56.2 ------plasmid Comamonas testosteroni plasmid pTB30 [PROTEOBACTERIA] (JF274987) circular 79,291 63.9 76 76 - - - - plasmid Conexibacter woesei DSM 14684 chromosome [ACTINOBACTERIA] (CP001854) circular 6,359,369 72.7 5,956 5,828 3 45 2 78 genome Coprothermobacter proteolyticus DSM 5265 chromosome [FIRMICUTES] (CP001145) circular 1,424,912 44.8 1,460 1,399 6 47 2 6 genome Coraliomargarita akajimensis DSM 45221 chromosome [VERRUMICROBIA] (CP001998) circular 3,750,771 53.6 3,100 3,018 6 46 2 28 genome Corallococcus coralloides DSM 2259 chromosome [PROTEOBACTERIA] (CP003389) circular 10,080,619 69.9 8,054 7,840 9 59 1 145 genome Coriobacterium glomerans PW2 chromosome [ACTINOBACTERIA] (CP002628) circular 2,115,681 60.4 1,839 1,733 6 46 3 51 genome Corynebacterium aurimucosum ATCC 700975 chromosome [ACTINOBACTERIA] (CP001601) circular 2,790,189 60.6 2,618 2,530 10 54 2 21 genome Corynebacterium aurimucosum ATCC 700975 plasmid pET44827 [ACTINOBACTERIA] (FM164414) circular 29,037 53.3 27 23 - 1 - 3 genome Corynebacterium callunae plasmid pCC1 [ACTINOBACTERIA] (AJ308231) circular 4,109 54.4 5 5 - - - - plasmid Corynebacterium casei plasmid pCASE1 [ACTINOBACTERIA] (AB444587) circular 2,461 56.8 3 3 - - - - plasmid Corynebacterium diphtheriae 241 chromosome [ACTINOBACTERIA] (CP003207) circular 2,426,551 53.4 2,252 2,152 15 49 1 35 genome Corynebacterium diphtheriae 31A chromosome [ACTINOBACTERIA] (CP003206) circular 2,535,346 53.6 2,383 2,258 15 49 1 60 genome Corynebacterium diphtheriae BH8 chromosome [ACTINOBACTERIA] (CP003209) circular 2,485,519 53.6 2,359 2,223 15 52 1 68 genome Corynebacterium diphtheriae C7 (beta) chromosome [ACTINOBACTERIA] (CP003210) circular 2,499,189 53.5 2,357 2,230 15 54 1 57 genome Corynebacterium diphtheriae CDCE 8392 chromosome [ACTINOBACTERIA] (CP003211) circular 2,433,326 53.6 2,270 2,135 15 52 1 67 genome Corynebacterium diphtheriae HC01 chromosome [ACTINOBACTERIA] (CP003212) circular 2,427,149 53.4 2,255 2,162 15 52 1 25 genome Corynebacterium diphtheriae HC02 chromosome [ACTINOBACTERIA] (CP003213) circular 2,468,612 53.7 2,285 2,179 15 52 1 38 genome Corynebacterium diphtheriae HC03 chromosome [ACTINOBACTERIA] (CP003214) circular 2,478,364 53.5 2,280 2,186 15 49 1 29 genome Corynebacterium diphtheriae HC04 chromosome [ACTINOBACTERIA] (CP003215) circular 2,484,332 53.5 2,299 2,190 15 49 1 44 genome Corynebacterium diphtheriae INCA 402 chromosome [ACTINOBACTERIA] (CP003208) circular 2,449,071 53.7 2,279 2,163 16 49 1 50 genome Corynebacterium diphtheriae NCTC 13129 chromosome [ACTINOBACTERIA] (BX248353) circular 2,488,635 53.5 2,291 2,185 15 52 1 38 genome Corynebacterium diphtheriae plasmid pNG2 [ACTINOBACTERIA] (AF492560) circular 15,100 56.1 15 15 - - - - plasmid Corynebacterium diphtheriae plasmid pNGA2 [ACTINOBACTERIA] (AY061891) circular 4,191 51.4 3 3 - - - - plasmid Corynebacterium diphtheriae PW8 chromosome [ACTINOBACTERIA] (CP003216) circular 2,530,683 53.7 2,355 2,200 15 50 1 89 genome Corynebacterium diphtheriae VA01 chromosome [ACTINOBACTERIA] (CP003217) circular 2,395,441 53.4 2,200 2,100 15 49 1 35 genome Corynebacterium efficiens YS-314 chromosome [ACTINOBACTERIA] (BA000035) circular 3,147,090 63.1 2,836 2,739 15 56 1 25 genome Corynebacterium efficiens YS-314 plasmid pCE2 [ACTINOBACTERIA] (AP005225) circular 23,743 54.4 16 16 - - - - genome Corynebacterium efficiens YS-314 plasmid pCE3 [ACTINOBACTERIA] (AP005226) circular 48,672 56.4 39 38 - - - 1 genome Corynebacterium glutamicum 22243 R-plasmid pAG1 [ACTINOBACTERIA] (AF121000) linear 19,751 59.0 19 19 - - - - plasmid Corynebacterium glutamicum ATCC 13032 chromosome [ACTINOBACTERIA] (BA000036) circular 3,309,401 53.8 3,057 2,959 18 60 2 18 genome Corynebacterium glutamicum ATCC 13032 chromosome [ACTINOBACTERIA] (BX927147) circular 3,282,708 53.8 3,081 2,974 18 60 8 21 genome Corynebacterium glutamicum plasmid pAG3 [ACTINOBACTERIA] (AY172684) circular 4,603 51.9 6 6 - - - - plasmid Corynebacterium glutamicum plasmid pAM330 [ACTINOBACTERIA] (D00038) linear 4,448 53.3 2 2 - - - - plasmid Corynebacterium glutamicum plasmid pBl1 [ACTINOBACTERIA] (AF092037) circular 4,447 53.4 1 1 - - - - plasmid Corynebacterium glutamicum plasmid pCG2 [ACTINOBACTERIA] (AY172685) circular 6,758 50.9 6 6 - - - - plasmid Corynebacterium glutamicum plasmid pCGR2 [ACTINOBACTERIA] (AB525231) circular 24,235 53.9 20 20 - - - - plasmid Corynebacterium glutamicum plasmid pGA2 [ACTINOBACTERIA] (AY172687) circular 19,218 50.6 15 15 - - - - plasmid Corynebacterium glutamicum plasmid pSR1 [ACTINOBACTERIA] (Z22927) linear 3,054 57.0 2 2 - - - - plasmid Corynebacterium glutamicum plasmid pTET3 [ACTINOBACTERIA] (AJ420072) circular 27,856 54.9 27 27 - - - - plasmid Corynebacterium glutamicum plasmid pXZ10142 [ACTINOBACTERIA] (X72691) linear 2,444 57.0 5 5 - - - - plasmid

18 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Corynebacterium glutamicum plasmid pXZ10145.1 [ACTINOBACTERIA] (U85507) circular 4,885 59.6 6 6 - - - - plasmid Corynebacterium glutamicum plasmid pXZ608 [ACTINOBACTERIA] (AF479770) circular 5,949 56.0 1 1 - - - - plasmid Corynebacterium glutamicum plasmid unknown [ACTINOBACTERIA] (X03987) linear 4,457 53.4 ------plasmid Corynebacterium glutamicum R chromosome [ACTINOBACTERIA] (AP009044) circular 3,314,179 54.1 3,082 2,930 18 57 1 76 genome Corynebacterium glutamicum R plasmid pCGR1 [ACTINOBACTERIA] (AP009045) circular 49,120 53.9 67 67 - - - - genome Corynebacterium glutamicum R-plasmid pCG4 [ACTINOBACTERIA] (AF164956) linear 29,371 52.1 31 31 - - - - plasmid Corynebacterium jeikeium K411 chromosome [ACTINOBACTERIA] (CR931997) circular 2,462,499 61.4 2,147 2,065 9 50 1 22 genome Corynebacterium jeikeium K411 plasmid pKW4 [ACTINOBACTERIA] (AF401314) circular 14,323 53.8 13 13 - - - - genome Corynebacterium jeikeium plasmid pA501 [ACTINOBACTERIA] (AY266269) circular 19,934 55.1 23 21 - - - - plasmid Corynebacterium jeikeium plasmid pA505 [ACTINOBACTERIA] (AY263990) circular 11,946 55.9 11 11 - - - - plasmid Corynebacterium jeikeium plasmid pB85766 [ACTINOBACTERIA] (AF486522) circular 14,875 55.1 16 16 - - - - plasmid Corynebacterium jeikeium plasmid pCJ84 [ACTINOBACTERIA] (AY048596) circular 7,580 53.5 8 8 - - - - plasmid Corynebacterium jeikeium plasmid pK43 [ACTINOBACTERIA] (AF364477) circular 7,617 54.7 9 9 - - - - plasmid Corynebacterium jeikeium plasmid pK64 [ACTINOBACTERIA] (AY079086) circular 10,904 54.1 15 15 - - - - plasmid Corynebacterium kroppenstedtii DSM 44385 chromosome [ACTINOBACTERIA] (CP001620) circular 2,446,804 57.5 2,072 1,939 9 46 1 77 genome Corynebacterium pseudotuberculosis 1/06-A chromosome [ACTINOBACTERIA] (CP003082) circular 2,279,118 52.2 2,053 1,850 12 49 1 141 genome Corynebacterium pseudotuberculosis 1002 chromosome [ACTINOBACTERIA] (CP001809) circular 2,335,113 52.2 2,095 1,987 12 48 1 47 genome Corynebacterium pseudotuberculosis 258 chromosome [ACTINOBACTERIA] (CP003540) circular 2,369,817 52.1 2,133 2,011 12 48 1 61 genome Corynebacterium pseudotuberculosis 267 chromosome [ACTINOBACTERIA] (CP003407) circular 2,337,628 52.2 2,096 2,006 12 49 1 28 genome Corynebacterium pseudotuberculosis 3/99-5 chromosome [ACTINOBACTERIA] (CP003152) circular 2,337,938 52.2 2,102 1,997 12 49 1 43 genome Corynebacterium pseudotuberculosis 31 chromosome [ACTINOBACTERIA] (CP003421) circular 2,389,687 52.1 2,161 2,069 12 44 1 35 genome Corynebacterium pseudotuberculosis 316 chromosome [ACTINOBACTERIA] (CP003077) circular 2,310,415 52.1 2,070 1,911 12 49 1 97 genome Corynebacterium pseudotuberculosis 42/02-A chromosome [ACTINOBACTERIA] (CP003062) circular 2,337,606 52.2 2,101 1,996 12 49 1 43 genome Corynebacterium pseudotuberculosis C231 chromosome [ACTINOBACTERIA] (CP001829) circular 2,328,208 52.2 2,086 1,973 12 48 1 52 genome Corynebacterium pseudotuberculosis CIP 52.97 chromosome [ACTINOBACTERIA] (CP003061) circular 2,320,595 52.1 2,088 1,920 12 47 1 108 genome Corynebacterium pseudotuberculosis Cp162 chromosome [ACTINOBACTERIA] (CP003652) circular 2,293,464 52.2 2,051 1,881 12 49 1 108 genome Corynebacterium pseudotuberculosis FRC41 chromosome [ACTINOBACTERIA] (CP002097) circular 2,337,913 52.2 2,102 2,000 12 49 1 40 genome Corynebacterium pseudotuberculosis I19 chromosome [ACTINOBACTERIA] (CP002251) circular 2,337,730 52.2 2,098 1,980 12 49 1 56 genome Corynebacterium pseudotuberculosis P54B96 chromosome [ACTINOBACTERIA] (CP003385) circular 2,337,657 52.2 2,097 1,938 12 49 1 97 genome Corynebacterium pseudotuberculosis PAT10 chromosome [ACTINOBACTERIA] (CP002924) circular 2,335,323 52.2 2,097 1,967 12 48 1 69 genome Corynebacterium resistens DSM 45100 chromosome [ACTINOBACTERIA] (CP002857) circular 2,601,311 57.1 2,256 2,118 8 51 1 77 genome Corynebacterium resistens DSM 45100 plasmid pJA144188 [ACTINOBACTERIA] (FN825254) circular 28,312 55.3 29 20 - - - 7 plasmid Corynebacterium sp. L2-79-05 plasmid pLEW279a [ACTINOBACTERIA] (DQ390458) circular 34,606 58.6 43 43 - - - - plasmid Corynebacterium sp. L2-79-05 plasmid pLEW279b [ACTINOBACTERIA] (DQ390457) circular 29,854 56.4 27 27 - - - - plasmid Corynebacterium striatum plasmid pTP10 [ACTINOBACTERIA] (AF024666) circular 51,409 58.5 46 39 - - - - plasmid Corynebacterium ulcerans 0102 chromosome [ACTINOBACTERIA] (AP012284) circular 2,579,188 53.4 2,339 2,250 12 51 1 25 genome Corynebacterium ulcerans 809 chromosome [ACTINOBACTERIA] (CP002790) circular 2,502,095 53.3 2,243 2,167 12 52 1 11 genome Corynebacterium ulcerans BR-AD22 chromosome [ACTINOBACTERIA] (CP002791) circular 2,606,374 53.4 2,373 2,276 12 52 1 32 genome Corynebacterium urealyticum DSM 7109 chromosome [ACTINOBACTERIA] (AM942444) circular 2,369,219 64.2 2,018 1,940 9 51 1 17 genome Corynebacterium variabile DSM 44702 chromosome [ACTINOBACTERIA] (CP002917) circular 3,433,007 67.1 3,155 2,955 18 59 1 122 genome Coxiella burnetii CbuG_Q212 chromosome [PROTEOBACTERIA] (CP001019) circular 2,008,870 42.6 2,126 1,853 3 42 1 226 genome Coxiella burnetii CbuK_Q154 chromosome [PROTEOBACTERIA] (CP001020) circular 2,063,100 42.7 2,184 1,961 3 42 1 175 genome Coxiella burnetii CbuK_Q154 plasmid pQpRS_K_Q154 [PROTEOBACTERIA] (CP001021) circular 39,280 39.7 45 40 - - - 5 genome Coxiella burnetii Dugway 5J108-111 chromosome [PROTEOBACTERIA] (CP000733) circular 2,158,758 42.4 2,187 2,002 3 42 1 138 genome Coxiella burnetii Dugway 5J108-111 plasmid pQpDG [PROTEOBACTERIA] (CP000735) circular 54,179 39.8 62 58 - - - 4 genome Coxiella burnetii MSU Goat Q177 plasmid QpRS [PROTEOBACTERIA] (CP000914) circular 39,281 39.7 45 39 - - - 6 plasmid Coxiella burnetii plasmid QpDV [PROTEOBACTERIA] (AF131076) circular 32,601 39.5 34 34 - - - - plasmid Coxiella burnetii plasmid QpH1 [PROTEOBACTERIA] (X75356) circular 37,329 39.3 37 37 - - - - plasmid Coxiella burnetii RSA 331 chromosome [PROTEOBACTERIA] (CP000890) circular 2,016,427 42.8 2,157 1,949 3 42 3 159 genome Coxiella burnetii RSA 331 plasmid pQpH1 [PROTEOBACTERIA] (CP000889) circular 37,317 39.3 42 40 - - - 2 genome Coxiella burnetii RSA 493 chromosome [PROTEOBACTERIA] (AE016828) circular 1,995,281 42.7 2,059 1,823 3 42 2 189 genome Coxiella burnetii RSA 493 plasmid pQpH1 [PROTEOBACTERIA] (AE016829) circular 37,393 39.3 35 30 - - - 5 genome Croceibacter atlanticus HTCC2559 chromosome [BACTEROIDETES] (CP002046) circular 2,952,962 33.9 2,693 2,639 6 36 1 11 genome Cronobacter sakazakii ATCC BAA-894 chromosome [PROTEOBACTERIA] (CP000783) circular 4,368,373 56.8 4,073 3,902 22 83 25 41 genome Cronobacter sakazakii ATCC BAA-894 plasmid pESA2 [PROTEOBACTERIA] (CP000784) circular 31,208 51.6 33 32 - - - 1 genome Cronobacter sakazakii ATCC BAA-894 plasmid pESA3 [PROTEOBACTERIA] (CP000785) circular 131,196 56.8 115 113 - - - 2 genome Cronobacter sakazakii ES15 chromosome [PROTEOBACTERIA] (CP003312) circular 4,268,675 57.1 3,935 3,792 22 80 1 40 genome Cronobacter turicensis z3032 chromosome [PROTEOBACTERIA] (FN543093) circular 4,384,463 57.4 4,073 3,928 22 84 1 38 genome Cronobacter turicensis z3032 plasmid pCTU1 [PROTEOBACTERIA] (FN543094) circular 138,339 56.1 111 106 - - - 5 genome Cronobacter turicensis z3032 plasmid pCTU2 [PROTEOBACTERIA] (FN543095) circular 22,448 49.2 24 24 - - - - genome Cronobacter turicensis z3032 plasmid pCTU3 [PROTEOBACTERIA] (FN543096) circular 53,842 50.0 52 44 - - - 8 genome Cryptobacterium curtum DSM 15641 chromosome [ACTINOBACTERIA] (CP001682) circular 1,617,804 50.9 1,406 1,299 9 47 3 48 genome Cupriavidus (Ralstonia) metallidurans CH34 chromosome [PROTEOBACTERIA] (CP000352) circular 3,928,089 63.8 3,627 3,525 6 55 4 37 genome Cupriavidus (Ralstonia) metallidurans CH34 megaplasmid [PROTEOBACTERIA] (CP000353) circular 2,580,084 63.6 2,292 2,257 6 8 - 21 genome Cupriavidus (Ralstonia) metallidurans CH34 plasmid pMOL28 [PROTEOBACTERIA] (CP000355) circular 171,459 60.5 165 161 - - - 4 genome Cupriavidus (Ralstonia) metallidurans CH34 plasmid pMOL28 [PROTEOBACTERIA] (X90708) circular 171,461 60.5 114 114 - - - - plasmid Cupriavidus (Ralstonia) metallidurans CH34 plasmid pMOL30 [PROTEOBACTERIA] (CP000354) circular 233,720 60.1 242 226 - - - 16 genome Cupriavidus (Ralstonia) metallidurans CH34 plasmid pMOL30 [PROTEOBACTERIA] (X71400) circular 233,755 60.1 177 177 - - - - plasmid Cupriavidus necator (Ralstonia eutropha) H16 chromosome1 [PROTEOBACTERIA] (AM260479) circular 4,052,032 66.5 3,743 3,610 9 53 1 70 genome Cupriavidus necator (Ralstonia eutropha) H16 chromosome2 [PROTEOBACTERIA] (AM260480) circular 2,912,490 66.8 2,562 2,509 6 7 - 40 genome Cupriavidus necator (Ralstonia eutropha) H16 megaplasmid pHG1 [PROTEOBACTERIA] (AY305378) circular 452,156 62.3 406 369 - 1 - 36 genome Cupriavidus necator (Ralstonia eutropha) N-1 chromosome1 [PROTEOBACTERIA] (CP002877) circular 3,872,936 66.5 3,625 3,488 9 57 1 70 genome Cupriavidus necator (Ralstonia eutropha) N-1 chromosome2 [PROTEOBACTERIA] (CP002878) circular 2,684,606 66.7 2,418 2,347 6 7 - 58 genome Cupriavidus necator (Ralstonia eutropha) N-1 plasmid BB1p [PROTEOBACTERIA] (CP002879) circular 1,499,175 61.4 1,302 1,204 - 3 - 95 genome Cupriavidus necator (Ralstonia eutropha) N-1 plasmid BB2p [PROTEOBACTERIA] (CP002880) circular 424,140 62.9 380 352 - 2 - 26 genome Cupriavidus pinatubonensis (Ralstonia eutropha) JMP134 chromosome1 [PROTEOBACTERIA] (CP000090) circular 3,806,533 64.7 3,524 3,431 9 54 3 27 genome Cupriavidus pinatubonensis (Ralstonia eutropha) JMP134 chromosome2 [PROTEOBACTERIA] (CP000091) circular 2,726,152 65.0 2,450 2,396 9 11 - 34 genome Cupriavidus pinatubonensis (Ralstonia eutropha) JMP134 megaplasmid [PROTEOBACTERIA] (CP000092) circular 634,917 60.6 564 537 - - - 27 genome Cupriavidus pinatubonensis (Ralstonia eutropha) JMP134 plasmid pJP4 [PROTEOBACTERIA] (AY365053) circular 87,688 64.7 90 88 - - - 2 plasmid Cupriavidus pinatubonensis (Ralstonia eutropha) JMP134 plasmid1 [PROTEOBACTERIA] (CP000093) circular 87,688 64.7 90 88 - - - 2 genome Cupriavidus taiwanensis LMG 19424 chromosome1 [PROTEOBACTERIA] (CU633749) circular 3,416,911 67.5 3,151 3,065 9 57 9 11 genome Cupriavidus taiwanensis LMG 19424 chromosome2 [PROTEOBACTERIA] (CU633750) circular 2,502,411 67.9 2,178 2,146 6 6 3 17 genome Cupriavidus taiwanensis LMG 19424 plasmid pRALTA [PROTEOBACTERIA] (CU633751) circular 557,200 59.7 416 368 - 1 - 47 genome Cupriavidus taiwanensis plasmid pTJ86-1 [PROTEOBACTERIA] (DQ459356) circular 2,221 61.7 1 1 - - - - plasmid Cupriavidus taiwanensis plasmid pTJ86-2 [PROTEOBACTERIA] (DQ459357) circular 2,229 61.6 1 1 - - - - plasmid Cyanothece sp. ATCC 51142 chromosome1 [CYANOBACTERIA] (CP000806) circular 4,934,271 37.9 4,476 4,392 6 41 3 34 genome Cyanothece sp. ATCC 51142 chromosome2 [CYANOBACTERIA] (CP000807) linear 429,701 38.6 432 425 - - - 7 genome

19 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Cyanothece sp. ATCC 51142 plasmidA [CYANOBACTERIA] (CP000808) circular 39,620 36.8 32 32 - - - - genome Cyanothece sp. ATCC 51142 plasmidB [CYANOBACTERIA] (CP000809) circular 31,856 41.5 23 22 - - - 1 genome Cyanothece sp. ATCC 51142 plasmidC [CYANOBACTERIA] (CP000810) circular 14,685 38.1 17 17 - - - - genome Cyanothece sp. ATCC 51142 plasmidD [CYANOBACTERIA] (CP000811) circular 10,244 37.0 10 10 - - - - genome Cyanothece sp. PCC 7424 chromosome [CYANOBACTERIA] (CP001291) circular 5,942,652 38.6 5,248 5,099 9 44 2 94 genome Cyanothece sp. PCC 7424 plasmid pP742401 [CYANOBACTERIA] (CP001292) circular 328,635 37.1 273 253 - - - 20 genome Cyanothece sp. PCC 7424 plasmid pP742402 [CYANOBACTERIA] (CP001293) circular 197,705 37.4 188 175 - - - 13 genome Cyanothece sp. PCC 7424 plasmid pP742403 [CYANOBACTERIA] (CP001294) circular 29,239 40.7 27 24 - - - 3 genome Cyanothece sp. PCC 7424 plasmid pP742404 [CYANOBACTERIA] (CP001295) circular 22,636 39.4 19 19 - - - - genome Cyanothece sp. PCC 7424 plasmid pP742405 [CYANOBACTERIA] (CP001296) circular 18,083 38.2 19 18 - - - 1 genome Cyanothece sp. PCC 7424 plasmid pP742406 [CYANOBACTERIA] (CP001297) circular 15,219 40.2 12 12 - - - - genome Cyanothece sp. PCC 7425 chromosome [CYANOBACTERIA] (CP001344) circular 5,374,574 50.8 4,969 4,792 6 46 2 123 genome Cyanothece sp. PCC 7425 plasmid pP742501 [CYANOBACTERIA] (CP001345) circular 196,837 48.9 147 140 - - - 7 genome Cyanothece sp. PCC 7425 plasmid pP742502 [CYANOBACTERIA] (CP001346) circular 179,973 49.1 173 161 - - - 12 genome Cyanothece sp. PCC 7425 plasmid pP742503 [CYANOBACTERIA] (CP001347) circular 34,726 47.1 28 27 - - - 1 genome Cyanothece sp. PCC 7822 chromosome [CYANOBACTERIA] (CP002198) circular 6,091,620 40.2 5,472 5,313 9 47 2 101 genome Cyanothece sp. PCC 7822 plasmid Cy782201 [CYANOBACTERIA] (CP002199) linear 879,545 38.4 596 571 - - - 25 genome Cyanothece sp. PCC 7822 plasmid Cy782202 [CYANOBACTERIA] (CP002200) linear 473,846 39.1 422 400 - - - 22 genome Cyanothece sp. PCC 7822 plasmid Cy782203 [CYANOBACTERIA] (CP002201) circular 291,993 39.0 270 252 - - - 18 genome Cyanothece sp. PCC 7822 plasmid Cy782204 [CYANOBACTERIA] (CP002202) circular 47,550 39.0 34 30 - - - 4 genome Cyanothece sp. PCC 7822 plasmid Cy782205 [CYANOBACTERIA] (CP002203) circular 43,617 41.8 36 32 - - - 4 genome Cyanothece sp. PCC 7822 plasmid Cy782206 [CYANOBACTERIA] (CP002204) linear 13,777 31.9 12 12 - - - - genome Cyanothece sp. PCC 8801 chromosome [CYANOBACTERIA] (CP001287) circular 4,679,413 39.8 4,332 4,194 6 43 2 87 genome Cyanothece sp. PCC 8801 plasmid pP880101 [CYANOBACTERIA] (CP001288) circular 50,894 38.9 57 53 - - - 4 genome Cyanothece sp. PCC 8801 plasmid pP880102 [CYANOBACTERIA] (CP001289) circular 40,786 40.2 44 43 - - - 1 genome Cyanothece sp. PCC 8801 plasmid pP880103 [CYANOBACTERIA] (CP001290) circular 16,601 40.4 11 10 - - - 1 genome Cyanothece sp. PCC 8802 chromosome [CYANOBACTERIA] (CP001701) circular 4,669,813 39.8 4,337 4,220 6 42 3 66 genome Cyanothece sp. PCC 8802 plasmid pP880201 [CYANOBACTERIA] (CP001702) circular 75,678 39.5 71 64 - - - 7 genome Cyanothece sp. PCC 8802 plasmid pP880202 [CYANOBACTERIA] (CP001703) circular 23,870 41.5 24 21 - - - 3 genome Cyanothece sp. PCC 8802 plasmid pP880203 [CYANOBACTERIA] (CP001704) circular 22,723 39.3 31 30 - - - 1 genome Cyanothece sp. PCC 8802 plasmid pP880204 [CYANOBACTERIA] (CP001705) circular 11,263 38.3 12 12 - - - - genome Cyclobacterium marinum DSM 745 chromosome [BACTEROIDETES] (CP002955) circular 6,221,273 38.1 5,033 4,942 9 39 2 41 genome Cycloclasticus sp. P1 chromosome [PROTEOBACTERIA] (CP003230) circular 2,363,215 42.0 2,277 2,224 3 35 1 14 genome Cytophaga hutchinsonii ATCC 33406 chromosome [BACTEROIDETES] (CP000383) circular 4,433,218 38.8 3,730 3,662 9 38 1 20 genome Dechloromonas aromatica RCB chromosome [PROTEOBACTERIA] (CP000089) circular 4,501,104 59.2 4,270 4,156 12 64 3 35 genome Dechlorosoma suillum PS chromosome [PROTEOBACTERIA] (CP003153) circular 3,806,980 65.4 3,469 3,350 6 55 2 56 genome Deferribacter desulfuricans SSM1 chromosome [DEFERRIBACTERES] (AP011529) circular 2,234,389 31.1 2,205 2,142 6 44 1 12 genome Deferribacter desulfuricans SSM1 megaplasmid pDF308 [DEFERRIBACTERES] (AP011530) circular 308,544 24.5 286 286 - - - - genome Dehalobacter sp. CF chromosome [FIRMICUTES] (CP003870) circular 3,092,048 44.3 2,942 2,860 9 51 1 21 genome Dehalobacter sp. DCA chromosome [FIRMICUTES] (CP003869) circular 3,069,953 44.6 2,930 2,825 9 51 1 44 genome Dehalococcoides mccartyi 195 chromosome [CHLOROFLEXI] (CP000027) circular 1,469,720 48.9 1,577 1,492 3 46 3 32 genome Dehalococcoides mccartyi BAV1 chromosome [CHLOROFLEXI] (CP000688) circular 1,341,892 47.2 1,446 1,380 3 46 2 14 genome Dehalococcoides mccartyi CBDB1 chromosome [CHLOROFLEXI] (AJ965256) circular 1,395,502 47.0 1,467 1,407 3 46 3 7 genome Dehalococcoides mccartyi GT chromosome [CHLOROFLEXI] (CP001924) circular 1,360,154 47.3 1,452 1,390 3 46 1 11 genome Dehalococcoides mccartyi VS chromosome [CHLOROFLEXI] (CP001827) circular 1,413,462 47.3 1,495 1,432 3 46 2 12 genome Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome [CHLOROFLEXI] (CP002084) circular 1,686,510 55.0 1,716 1,637 3 46 1 29 genome Deinococcus deserti VCD115 chromosome [DEINOCOCCUS-THERMUS] (CP001114) circular 2,819,842 63.4 2,676 2,591 9 48 1 27 genome Deinococcus deserti VCD115 plasmid1 [DEINOCOCCUS-THERMUS] (CP001115) circular 324,711 60.7 263 249 3 - - 11 genome Deinococcus deserti VCD115 plasmid2 [DEINOCOCCUS-THERMUS] (CP001116) circular 314,317 63.5 254 248 - - - 6 genome Deinococcus deserti VCD115 plasmid3 [DEINOCOCCUS-THERMUS] (CP001117) circular 396,459 61.4 363 351 - - - 12 genome Deinococcus geothermalis DSM 11300 chromosome [DEINOCOCCUS-THERMUS] (CP000359) circular 2,467,205 66.6 2,396 2,305 9 49 3 30 genome Deinococcus geothermalis DSM 11300 plasmid pDGEO02 [DEINOCOCCUS-THERMUS] (CP000856) linear 205,686 66.6 200 197 - - - 3 genome Deinococcus geothermalis DSM 11300 plasmid1 [DEINOCOCCUS-THERMUS] (CP000358) circular 574,127 65.7 519 492 3 - - 24 genome Deinococcus gobiensis I-0 chromosome [DEINOCOCCUS-THERMUS] (CP002191) circular 3,137,147 70.8 2,999 2,871 15 46 1 66 genome Deinococcus gobiensis I-0 plasmid P1 [DEINOCOCCUS-THERMUS] (CP002192) circular 432,699 69.8 371 356 - 1 - 14 genome Deinococcus gobiensis I-0 plasmid P2 [DEINOCOCCUS-THERMUS] (CP002193) circular 424,524 63.9 437 425 - - - 12 genome Deinococcus gobiensis I-0 plasmid P3 [DEINOCOCCUS-THERMUS] (CP002194) circular 231,600 63.0 221 216 - - - 5 genome Deinococcus gobiensis I-0 plasmid P4 [DEINOCOCCUS-THERMUS] (CP002195) circular 72,036 60.4 57 55 - - - 2 genome Deinococcus gobiensis I-0 plasmid P5 [DEINOCOCCUS-THERMUS] (CP002196) circular 54,602 61.9 41 41 - - - - genome Deinococcus gobiensis I-0 plasmid P6 [DEINOCOCCUS-THERMUS] (CP002197) circular 53,428 54.7 34 33 - - - 1 genome Deinococcus maricopensis DSM 21211 chromosome [DEINOCOCCUS-THERMUS] (CP002454) circular 3,498,530 69.8 3,306 3,215 12 52 2 25 genome Deinococcus proteolyticus MRP chromosome [DEINOCOCCUS-THERMUS] (CP002536) circular 2,147,060 66.2 2,032 1,904 9 46 2 71 genome Deinococcus proteolyticus MRP plasmid pDEIPR01 [DEINOCOCCUS-THERMUS] (CP002537) circular 314,518 66.5 255 244 - - - 11 genome Deinococcus proteolyticus MRP plasmid pDEIPR02 [DEINOCOCCUS-THERMUS] (CP002538) circular 195,800 61.4 222 221 - - - 1 genome Deinococcus proteolyticus MRP plasmid pDEIPR03 [DEINOCOCCUS-THERMUS] (CP002539) circular 132,270 66.1 112 109 - - - 3 genome Deinococcus proteolyticus MRP plasmid pDEIPR04 [DEINOCOCCUS-THERMUS] (CP002540) circular 97,188 59.2 103 95 - - - 8 genome Deinococcus radiodurans R1 chromosome1 [DEINOCOCCUS-THERMUS] (AE000513) circular 2,648,638 67.0 2,687 2,629 8 48 - 2 genome Deinococcus radiodurans R1 chromosome2 [DEINOCOCCUS-THERMUS] (AE001825) circular 412,348 66.7 369 368 1 1 - - genome Deinococcus radiodurans R1 plasmid CP1 [DEINOCOCCUS-THERMUS] (AE001827) circular 45,704 56.2 40 39 - - - - genome Deinococcus radiodurans R1 plasmid MP1 [DEINOCOCCUS-THERMUS] (AE001826) circular 177,466 63.2 142 131 - - - 9 genome Delftia acidovorans plasmid pUO1 [PROTEOBACTERIA] (AB063332) circular 67,066 63.7 69 69 - - - - plasmid Delftia acidovorans SPH-1 chromosome [PROTEOBACTERIA] (CP000884) circular 6,767,514 66.5 6,122 5,975 15 80 2 50 genome Delftia sp. Cs1-4 chromosome [PROTEOBACTERIA] (CP002735) circular 6,685,842 66.7 5,875 5,729 15 81 2 48 genome Denitrovibrio acetiphilus DSM 12809 chromosome [DEFERRIBACTERES] (CP001968) circular 3,222,077 42.5 3,049 2,982 6 42 2 17 genome Desulfarculus baarsii DSM 2075 chromosome [PROTEOBACTERIA] (CP002085) circular 3,655,731 65.7 3,294 3,204 3 46 2 39 genome Desulfatibacillum alkenivorans AK-01 chromosome [PROTEOBACTERIA] (CP001322) circular 6,517,073 54.5 5,425 5,300 6 56 2 61 genome Desulfitobacterium dehalogenans ATCC 51507 chromosome [FIRMICUTES] (CP003348) circular 4,321,753 45.0 4,135 3,971 18 73 3 70 genome Desulfitobacterium hafniense DCB-2 chromosome [FIRMICUTES] (CP001336) circular 5,279,134 47.5 4,933 4,785 15 73 2 58 genome Desulfitobacterium hafniense Y51 chromosome [FIRMICUTES] (AP008230) circular 5,727,534 47.4 5,355 5,164 18 57 1 115 genome Desulfobacca acetoxidans DSM 11109 chromosome [PROTEOBACTERIA] (CP002629) circular 3,282,536 52.9 2,958 2,850 4 46 2 56 genome Desulfobacterium autotrophicum HRM2 chromosome [PROTEOBACTERIA] (CP001087) circular 5,589,073 48.8 4,892 4,750 20 50 1 71 genome Desulfobacterium autotrophicum HRM2 plasmid pHRM2a [PROTEOBACTERIA] (CP001088) circular 68,709 42.0 66 63 - - - 3 genome Desulfobacula toluolica Tol2 chromosome [PROTEOBACTERIA] (FO203503) circular 5,197,905 41.4 4,645 4,527 12 49 1 56 genome Desulfobulbus propionicus DSM 2032 chromosome [PROTEOBACTERIA] (CP002364) circular 3,851,869 58.9 3,358 3,255 6 48 2 47 genome Desulfococcus oleovorans Hxd3 chromosome [PROTEOBACTERIA] (CP000859) circular 3,944,167 56.2 3,374 3,296 3 47 3 25 genome Desulfohalobium retbaense DSM 5692 chromosome [PROTEOBACTERIA] (CP001734) circular 2,864,304 57.5 2,494 2,400 6 50 2 36 genome Desulfohalobium retbaense DSM 5692 plasmid pDRET01 [PROTEOBACTERIA] (CP001735) circular 45,263 44.1 44 40 - - - 4 genome

20 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Desulfomicrobium baculatum DSM 4028 chromosome [PROTEOBACTERIA] (CP001629) circular 3,942,657 58.6 3,490 3,393 7 64 2 24 genome Desulfomonile tiedjei DSM 6799 chromosome [PROTEOBACTERIA] (CP003360) circular 6,500,104 50.1 5,588 5,462 3 50 3 70 genome Desulfomonile tiedjei DSM 6799 plasmid pDESTI.01 [PROTEOBACTERIA] (CP003361) circular 26,923 52.7 24 24 - - - - genome Desulfosporosinus acidiphilus SJ4 chromosome [FIRMICUTES] (CP003639) circular 4,926,837 42.1 4,484 4,310 25 66 3 80 genome Desulfosporosinus acidiphilus SJ4 plasmid pDESACI.01 [FIRMICUTES] (CP003640) circular 60,447 39.5 69 68 - - - 1 genome Desulfosporosinus meridiei DSM 13257 chromosome [FIRMICUTES] (CP003629) circular 4,873,567 41.8 4,482 4,304 31 80 3 64 genome Desulfosporosinus orientis DSM 765 chromosome [FIRMICUTES] (CP003108) circular 5,863,081 42.9 5,428 5,244 24 73 8 79 genome Desulfotalea psychrophila LSv54 chromosome [PROTEOBACTERIA] (CR522870) circular 3,523,383 46.8 3,157 2,997 22 65 1 72 genome Desulfotalea psychrophila LSv54 plasmidlarge [PROTEOBACTERIA] (CR522871) circular 121,587 43.6 104 98 - - - 6 genome Desulfotalea psychrophila LSv54 plasmidsmall [PROTEOBACTERIA] (CR522872) circular 14,664 28.6 18 18 - - - - genome Desulfotomaculum acetoxidans DSM 771 chromosome [FIRMICUTES] (CP001720) circular 4,545,624 41.6 4,217 4,007 29 67 - 114 genome Desulfotomaculum kuznetsovii DSM 6115 chromosome [FIRMICUTES] (CP002770) circular 3,601,386 54.9 3,513 3,373 9 45 2 84 genome Desulfotomaculum nigricans CO-1-SRB chromosome [FIRMICUTES] (CP002736) circular 2,892,255 46.6 2,805 2,658 24 65 1 57 genome Desulfotomaculum reducens MI-1 chromosome [FIRMICUTES] (CP000612) circular 3,608,104 42.3 3,543 3,392 24 70 2 55 genome Desulfotomaculum ruminis DSM 2154 chromosome [FIRMICUTES] (CP002780) circular 3,969,014 47.2 3,917 3,772 15 64 - 66 genome Desulfovibrio aespoeensis Aspo-2 chromosome [PROTEOBACTERIA] (CP002431) circular 3,629,109 62.6 3,350 3,232 6 54 2 56 genome Desulfovibrio africanus Walvis Bay chromosome [PROTEOBACTERIA] (CP003221) circular 4,200,534 61.4 3,817 3,731 9 57 2 18 genome Desulfovibrio alaskensis G20 chromosome [PROTEOBACTERIA] (CP000112) circular 3,730,232 57.8 3,461 3,326 12 67 2 54 genome Desulfovibrio desulfuricans desulfuricans ATCC 27774 chromosome [PROTEOBACTERIA] (CP001358) circular 2,873,437 57.4 2,911 2,777 4 52 1 77 genome Desulfovibrio desulfuricans ND132 chromosome [PROTEOBACTERIA] (CP003220) circular 3,858,580 65.2 3,481 3,398 6 55 2 20 genome Desulfovibrio magneticus RS-1 chromosome [PROTEOBACTERIA] (AP010904) circular 5,248,049 62.8 4,373 4,261 9 53 1 49 genome Desulfovibrio magneticus RS-1 plasmid pDMC1 [PROTEOBACTERIA] (AP010905) circular 58,704 58.0 63 61 - - - 2 genome Desulfovibrio magneticus RS-1 plasmid pDMC2 [PROTEOBACTERIA] (AP010906) circular 8,867 37.2 3 3 - - - - genome Desulfovibrio salexigens DSM 2638 chromosome [PROTEOBACTERIA] (CP001649) circular 4,289,847 47.1 3,900 3,766 15 89 2 28 genome Desulfovibrio sp. FW1012B plasmid pFW10101 [PROTEOBACTERIA] (CM001369) circular 97,864 66.8 75 73 - - - 2 plasmid Desulfovibrio sp. FW1012B plasmid pFW10102 [PROTEOBACTERIA] (CM001370) circular 21,111 57.5 16 16 - - - - plasmid Desulfovibrio vulgaris DP4 chromosome [PROTEOBACTERIA] (CP000527) circular 3,462,887 63.0 3,012 2,905 16 68 3 20 genome Desulfovibrio vulgaris DP4 plasmid pDVUL01 [PROTEOBACTERIA] (CP000528) circular 198,504 65.7 147 146 - - - 1 genome Desulfovibrio vulgaris Hildenborough chromosome [PROTEOBACTERIA] (AE017285) circular 3,570,858 63.1 3,481 3,379 16 68 2 16 genome Desulfovibrio vulgaris Hildenborough megaplasmid [PROTEOBACTERIA] (AE017286) circular 202,301 65.7 157 156 - - 1 - genome Desulfovibrio vulgaris Miyazaki F chromosome [PROTEOBACTERIA] (CP001197) circular 4,040,304 67.1 3,229 3,088 12 64 2 63 genome Desulfovibrio vulgaris RCH1 chromosome [PROTEOBACTERIA] (CP002297) circular 3,532,052 63.1 3,136 3,039 16 68 2 11 genome Desulfovibrio vulgaris RCH1 plasmid pDEVAL01 [PROTEOBACTERIA] (CP002298) circular 202,305 65.7 155 155 - - - - genome Desulfurispirillum indicum S5 chromosome [CHRYSIOGENETES] (CP002432) circular 2,928,377 56.1 2,705 2,616 9 37 2 41 genome Desulfurivibrio alkaliphilus AHT2 chromosome [PROTEOBACTERIA] (CP001940) circular 3,097,763 60.3 2,707 2,613 6 47 2 39 genome Desulfurobacterium thermolithotrophum DSM 11699 chromosome [AQUIFICAE] (CP002543) circular 1,541,968 34.9 1,587 1,500 6 43 2 36 genome Dichelobacter nodosus plasmid DN1 [PROTEOBACTERIA] (Y19120) circular 5,112 62.3 7 7 - - - - plasmid Dichelobacter nodosus VCS1703A chromosome [PROTEOBACTERIA] (CP000513) circular 1,389,350 44.4 1,335 1,270 9 45 2 9 genome Dickeya dadantii 3937 chromosome [PROTEOBACTERIA] (CP002038) circular 4,922,802 56.3 4,316 4,156 22 75 7 56 genome Dickeya dadantii Ech586 chromosome [PROTEOBACTERIA] (CP001836) circular 4,818,394 53.6 4,203 4,077 22 76 2 26 genome Dickeya dadantii Ech703 chromosome [PROTEOBACTERIA] (CP001654) circular 4,679,450 55.0 4,137 3,970 22 74 4 67 genome Dickeya zeae Ech1591 chromosome [PROTEOBACTERIA] (CP001655) circular 4,813,854 54.5 4,367 4,163 22 74 4 104 genome Dictyoglomus thermophilum H-6-12 chromosome [DICTYOGLOMI] (CP001146) circular 1,959,987 33.7 1,927 1,855 6 46 3 17 genome Dictyoglomus turgidum DSM 6724 chromosome [DICTYOGLOMI] (CP001251) circular 1,855,560 34.0 1,865 1,742 6 46 1 70 genome Dinoroseobacter shibae DFL 12 chromosome [PROTEOBACTERIA] (CP000830) circular 3,789,584 66.0 3,637 3,546 6 43 1 41 genome Dinoroseobacter shibae DFL 12 plasmid pDSHI01 [PROTEOBACTERIA] (CP000831) circular 190,506 60.1 188 182 - - - 6 genome Dinoroseobacter shibae DFL 12 plasmid pDSHI02 [PROTEOBACTERIA] (CP000832) circular 152,970 65.2 132 125 - - - 7 genome Dinoroseobacter shibae DFL 12 plasmid pDSHI03 [PROTEOBACTERIA] (CP000833) circular 126,304 60.5 129 127 - - - 2 genome Dinoroseobacter shibae DFL 12 plasmid pDSHI04 [PROTEOBACTERIA] (CP000834) circular 86,208 61.0 77 64 - - - 13 genome Dinoroseobacter shibae DFL 12 plasmid pDSHI05 [PROTEOBACTERIA] (CP000835) circular 72,296 68.9 72 71 - - - 1 genome Dyadobacter fermentans DSM 18053 chromosome [BACTEROIDETES] (CP001619) circular 6,967,790 51.5 5,799 5,697 12 38 2 50 genome Edwardsiella ictaluri 93-146 chromosome [PROTEOBACTERIA] (CP001600) circular 3,812,301 57.4 3,440 3,191 25 94 1 129 genome Edwardsiella ictaluri plasmid pEI1 [PROTEOBACTERIA] (AF244083) circular 4,807 51.2 5 5 - - - - plasmid Edwardsiella ictaluri plasmid pEI2 [PROTEOBACTERIA] (AF244084) circular 5,643 51.1 2 2 - - - - plasmid Edwardsiella tarda EIB202 chromosome [PROTEOBACTERIA] (CP001135) circular 3,760,463 59.7 3,332 3,179 25 95 1 32 genome Edwardsiella tarda EIB202 plasmid pEIB202 [PROTEOBACTERIA] (CP001136) circular 43,703 57.3 46 45 - - - 1 genome Edwardsiella tarda FL6-60 chromosome [PROTEOBACTERIA] (CP002154) circular 3,684,607 59.8 3,247 3,102 25 95 1 24 genome Edwardsiella tarda FL6-60 plasmid pFL6-60 [PROTEOBACTERIA] (CP002155) circular 44,194 51.4 48 46 - - - 2 genome Edwardsiella tarda plasmid pCK41 [PROTEOBACTERIA] (HQ332785) circular 72,832 53.9 84 84 - - - - plasmid Eggerthella lenta DSM 2243 chromosome [ACTINOBACTERIA] (CP001726) circular 3,632,260 64.2 3,125 3,032 9 48 2 34 genome Eggerthella sp. YY7918 chromosome [ACTINOBACTERIA] (AP012211) circular 3,123,671 56.2 2,636 2,516 6 48 1 65 genome Ehrlichia canis Jake chromosome [PROTEOBACTERIA] (CP000107) circular 1,315,030 29.0 972 925 3 36 3 5 genome Ehrlichia chaffeensis Arkansas chromosome [PROTEOBACTERIA] (CP000236) circular 1,176,248 30.1 936 883 3 37 4 9 genome Ehrlichia ruminantium Gardel chromosome [PROTEOBACTERIA] (CR925677) circular 1,499,920 27.5 962 909 3 36 1 13 genome Ehrlichia ruminantium Welgevonden chromosome [PROTEOBACTERIA] (CR767821) circular 1,516,355 27.5 962 916 3 36 1 6 genome Ehrlichia ruminantium Welgevonden chromosome [PROTEOBACTERIA] (CR925678) circular 1,512,977 27.5 964 912 3 36 1 12 genome Elusimicrobium minutum Pei191 chromosome [] (CP001055) circular 1,643,562 40.0 1,582 1,519 3 45 1 14 genome Emticicia oligotrophica DSM 17448 chromosome [BACTEROIDETES] (CP002961) linear 4,798,158 35.7 3,977 3,910 6 41 2 18 genome Emticicia oligotrophica DSM 17448 plasmid pEMTOL01 [BACTEROIDETES] (CP002962) linear 190,222 34.1 168 165 - - - 3 genome Emticicia oligotrophica DSM 17448 plasmid pEMTOL02 [BACTEROIDETES] (CP002963) linear 100,312 34.2 82 82 - - - - genome Emticicia oligotrophica DSM 17448 plasmid pEMTOL03 [BACTEROIDETES] (CP002964) linear 58,952 36.6 33 32 - - - 1 genome Emticicia oligotrophica DSM 17448 plasmid pEMTOL04 [BACTEROIDETES] (CP002965) linear 38,576 34.0 24 23 - - - 1 genome Emticicia oligotrophica DSM 17448 plasmid pEMTOL05 [BACTEROIDETES] (CP002966) linear 34,141 31.7 24 24 - - - - genome Ensifer (Sinorhizobium) fredii GR64 plasmid p64a [PROTEOBACTERIA] (CP002245) circular 183,612 59.0 158 156 - - - 2 plasmid Ensifer (Sinorhizobium) fredii HH103 chromosome [PROTEOBACTERIA] (HE616890) circular 4,305,723 62.6 4,033 3,909 9 53 1 61 genome Ensifer (Sinorhizobium) fredii HH103 plasmid pSfHH103a [PROTEOBACTERIA] (HE616891) circular 24,036 58.2 19 18 - - - 1 genome Ensifer (Sinorhizobium) fredii HH103 plasmid pSfHH103b [PROTEOBACTERIA] (HE616892) circular 61,880 58.5 60 58 - - - 2 genome Ensifer (Sinorhizobium) fredii HH103 plasmid pSfHH103c [PROTEOBACTERIA] (HE616893) circular 144,082 58.7 144 138 - - - 6 genome Ensifer (Sinorhizobium) fredii HH103 plasmid pSfHH103e [PROTEOBACTERIA] (HE616899) circular 2,096,125 62.4 1,923 1,860 - - - 63 genome Ensifer (Sinorhizobium) fredii NGR234 chromosome [PROTEOBACTERIA] (CP001389) circular 3,925,702 63.0 3,699 3,629 9 52 9 - genome Ensifer (Sinorhizobium) fredii NGR234 plasmid pNGR234a [PROTEOBACTERIA] (U00090) circular 536,165 58.5 422 405 - 1 3 13 genome Ensifer (Sinorhizobium) fredii NGR234 plasmid pNGR234b [PROTEOBACTERIA] (CP000874) circular 2,430,033 62.3 2,351 2,328 - - 7 16 genome Ensifer (Sinorhizobium) fredii USDA 257 chromosome [PROTEOBACTERIA] (CP003563) circular 6,476,459 62.1 6,052 5,790 9 54 1 198 genome Ensifer (Sinorhizobium) medicae WSM419 chromosome [PROTEOBACTERIA] (CP000738) circular 3,781,904 61.5 3,634 3,529 9 52 2 42 genome Ensifer (Sinorhizobium) medicae WSM419 plasmid pSMED01 [PROTEOBACTERIA] (CP000739) circular 1,570,951 61.5 1,478 1,441 - 1 - 36 genome Ensifer (Sinorhizobium) medicae WSM419 plasmid pSMED02 [PROTEOBACTERIA] (CP000740) circular 1,245,408 59.9 1,277 1,094 - - - 183 genome Ensifer (Sinorhizobium) medicae WSM419 plasmid pSMED03 [PROTEOBACTERIA] (CP000741) circular 219,313 60.1 196 149 - - - 47 genome

21 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Ensifer (Sinorhizobium) meliloti 1021 chromosome [PROTEOBACTERIA] (AL591688) circular 3,654,135 62.7 3,429 3,359 9 51 6 4 genome Ensifer (Sinorhizobium) meliloti 1021 plasmid pSymA [PROTEOBACTERIA] (AE006469) circular 1,354,226 60.4 1,293 1,290 - 2 1 - genome Ensifer (Sinorhizobium) meliloti 1021 plasmid pSymB [PROTEOBACTERIA] (AL591985) circular 1,683,333 62.4 1,570 1,569 - 1 - - genome Ensifer (Sinorhizobium) meliloti AK83 chromosome 1 [PROTEOBACTERIA] (CP002781) circular 3,820,344 62.7 3,667 3,559 9 55 2 42 genome Ensifer (Sinorhizobium) meliloti AK83 chromosome 2 [PROTEOBACTERIA] (CP002782) circular 1,680,879 62.4 1,538 1,486 - 1 - 51 genome Ensifer (Sinorhizobium) meliloti AK83 chromosome 3 [PROTEOBACTERIA] (CP002783) circular 1,312,480 60.0 1,284 1,161 - - - 123 genome Ensifer (Sinorhizobium) meliloti AK83 plasmid pSINME01 [PROTEOBACTERIA] (CP002784) circular 256,269 58.9 248 208 - - - 40 genome Ensifer (Sinorhizobium) meliloti AK83 plasmid pSINME02 [PROTEOBACTERIA] (CP002785) circular 70,499 57.9 76 65 - - - 11 genome Ensifer (Sinorhizobium) meliloti BL225C chromosome [PROTEOBACTERIA] (CP002740) circular 3,671,982 62.8 3,455 3,371 9 52 2 21 genome Ensifer (Sinorhizobium) meliloti BL225C plasmid pSINMEB01 [PROTEOBACTERIA] (CP002741) circular 1,616,209 60.1 1,543 1,441 - - - 102 genome Ensifer (Sinorhizobium) meliloti BL225C plasmid pSINMEB02 [PROTEOBACTERIA] (CP002742) circular 1,690,594 62.2 1,536 1,513 - 1 - 22 genome Ensifer (Sinorhizobium) meliloti plasmid pRm1132f [PROTEOBACTERIA] (AF327371) circular 7,212 61.6 8 8 - - - - plasmid Ensifer (Sinorhizobium) meliloti plasmid pSmeSM11a [PROTEOBACTERIA] (DQ145546) circular 144,170 59.5 160 160 - - - - plasmid Ensifer (Sinorhizobium) meliloti Rm41 chromosome [PROTEOBACTERIA] (HE995405) circular 3,679,105 62.7 3,513 3,410 9 54 1 39 genome Ensifer (Sinorhizobium) meliloti Rm41 plasmid pRM41A [PROTEOBACTERIA] (HE995406) circular 246,023 59.3 225 212 - - - 13 genome Ensifer (Sinorhizobium) meliloti Rm41 plasmid pSYMA [PROTEOBACTERIA] (HE995407) circular 1,559,666 60.6 1,487 1,413 - - - 74 genome Ensifer (Sinorhizobium) meliloti Rm41 plasmid pSYMB [PROTEOBACTERIA] (HE995408) circular 1,664,896 62.3 1,508 1,475 - 1 - 32 genome Ensifer (Sinorhizobium) meliloti SM11 chromosome [PROTEOBACTERIA] (CP001830) circular 3,908,022 62.7 3,778 3,679 9 52 1 37 genome Ensifer (Sinorhizobium) meliloti SM11 plasmid pSmeSM11b [PROTEOBACTERIA] (EF066650) circular 181,251 58.7 166 166 - - - - plasmid Ensifer (Sinorhizobium) meliloti SM11 plasmid pSmeSM11c [PROTEOBACTERIA] (CP001831) circular 1,633,319 60.2 1,577 1,498 - - - 79 genome Ensifer (Sinorhizobium) meliloti SM11 plasmid pSmeSM11d [PROTEOBACTERIA] (CP001832) circular 1,632,395 62.4 1,482 1,455 - 1 - 26 genome Enterobacter aerogenes KCTC 2190 chromosome [PROTEOBACTERIA] (CP002824) circular 5,280,350 54.8 5,021 4,912 25 84 - - genome Enterobacter aerogenes plasmid R751 [PROTEOBACTERIA] (U67194) circular 53,423 64.1 68 66 - - - - plasmid Enterobacter asburiae LF7a chromosome [PROTEOBACTERIA] (CP003026) circular 4,812,833 53.9 4,540 4,403 22 83 2 30 genome Enterobacter asburiae LF7a plasmid pENTAS01 [PROTEOBACTERIA] (CP003027) circular 166,725 52.2 177 168 - - - 9 genome Enterobacter asburiae LF7a plasmid pENTAS02 [PROTEOBACTERIA] (CP003028) circular 32,574 53.0 35 35 - - - - genome Enterobacter cloacae cloacae ATCC 13047 chromosome [PROTEOBACTERIA] (CP001918) circular 5,314,581 54.8 5,241 5,120 25 84 - 12 genome Enterobacter cloacae cloacae ATCC 13047 plasmid pECL_A [PROTEOBACTERIA] (CP001919) circular 199,562 52.5 274 274 - - - - genome Enterobacter cloacae cloacae ATCC 13047 plasmid pECL_B [PROTEOBACTERIA] (CP001920) circular 84,653 46.8 124 124 - - - - genome Enterobacter cloacae cloacae ENHKU01 chromosome [PROTEOBACTERIA] (CP003737) circular 4,726,582 55.1 4,479 4,296 25 82 1 75 genome Enterobacter cloacae dissolvens SDM chromosome [PROTEOBACTERIA] (CP003678) circular 4,968,248 55.1 4,669 4,499 25 79 1 65 genome Enterobacter cloacae EcWSU1 chromosome [PROTEOBACTERIA] (CP002886) circular 4,734,438 54.6 4,524 4,362 25 83 1 53 genome Enterobacter cloacae EcWSU1 plasmid pEcWSU1_A [PROTEOBACTERIA] (CP002887) circular 63,653 49.3 67 65 - - - 2 genome Enterobacter cloacae plasmid pCHE-A [PROTEOBACTERIA] (EU266532) circular 7,560 60.3 8 6 - - - - plasmid Enterobacter cloacae plasmid pEC-IMP [PROTEOBACTERIA] (EU855787) circular 318,782 47.8 315 309 - - - 6 plasmid Enterobacter cloacae plasmid pEC-IMPQ [PROTEOBACTERIA] (EU855788) circular 324,503 47.9 320 313 - - - 7 plasmid Enterobacter cloacae pUL3AT [PROTEOBACTERIA] (HE616889) circular 9,005 59.9 6 6 - - - - plasmid Enterobacter lignolytocus SCF1 chromosome [PROTEOBACTERIA] (CP002272) circular 4,814,049 57.0 4,457 4,333 22 82 2 18 genome Enterobacter sp. 638 chromosome [PROTEOBACTERIA] (CP000653) circular 4,518,712 53.0 4,276 4,137 22 83 2 32 genome Enterobacter sp. 638 plasmid pENTE01 [PROTEOBACTERIA] (CP000654) circular 157,749 50.6 140 138 - - - 2 genome Enterobacter sp. RFL1396 plasmid pEsp1396 [PROTEOBACTERIA] (AF527822) circular 5,622 42.4 5 5 - - - - plasmid Enterobacter sp. W001 plasmid pR23 [PROTEOBACTERIA] (JF703130) circular 10,497 50.4 8 7 - - - 1 plasmid Enterococcus faecalis D32 chromosome [FIRMICUTES] (CP003726) circular 2,987,450 37.5 2,988 2,844 12 62 - 70 genome Enterococcus faecalis D32 plasmid EFD32pA [FIRMICUTES] (CP003727) circular 12,893 33.5 15 13 - - - 2 genome Enterococcus faecalis D32 plasmid EFD32pB [FIRMICUTES] (CP003728) circular 62,162 35.2 79 77 - - - 2 genome Enterococcus faecalis OG1RF chromosome [FIRMICUTES] (CP002621) circular 2,739,625 37.8 2,636 2,548 12 58 2 16 genome Enterococcus faecalis plasmid pAM373 [FIRMICUTES] (AE002565) circular 36,804 34.7 49 49 - - - - plasmid Enterococcus faecalis plasmid pAMalpha1 [FIRMICUTES] (AF503772) circular 9,759 35.6 9 9 - - - - plasmid Enterococcus faecalis plasmid pAMbeta1 [FIRMICUTES] (GU128949) circular 27,815 33.6 32 32 - - - - plasmid Enterococcus faecalis plasmid pBEE99 [FIRMICUTES] (GU046453) circular 80,600 34.9 90 89 - - - - plasmid Enterococcus faecalis plasmid pCF10 [FIRMICUTES] (AY855841) circular 67,673 36.1 57 57 - - - - plasmid Enterococcus faecalis plasmid pEF-01 [FIRMICUTES] (CP002208) circular 32,388 35.3 29 29 - - - - plasmid Enterococcus faecalis plasmid pEF1071 [FIRMICUTES] (AF164559) circular 9,328 37.2 9 9 - - - - plasmid Enterococcus faecalis plasmid pMG2200 [FIRMICUTES] (AB374546) circular 106,527 39.9 113 113 - - - - plasmid Enterococcus faecalis plasmid pRE25 [FIRMICUTES] (X92945) circular 50,237 34.0 60 57 - - - 2 plasmid Enterococcus faecalis plasmid pTW9 [FIRMICUTES] (AB563188) circular 85,068 35.4 98 98 - - - - plasmid Enterococcus faecalis plasmid pWZ1668 [FIRMICUTES] (GQ484956) circular 48,365 35.0 47 40 - - - 7 plasmid Enterococcus faecalis V583 chromosome [FIRMICUTES] (AE016830) circular 3,218,031 37.5 3,257 3,112 12 68 - 1 genome Enterococcus faecalis V583 plasmid pTEF1 [FIRMICUTES] (AE016833) circular 66,320 34.4 74 72 - - - - genome Enterococcus faecalis V583 plasmid pTEF2 [FIRMICUTES] (AE016831) circular 57,660 33.9 62 62 - - - - genome Enterococcus faecalis V583 plasmid pTEF3 [FIRMICUTES] (AE016832) circular 17,963 33.3 19 18 - - - - genome Enterococcus faecium Aus0004 chromosome [FIRMICUTES] (CP003351) circular 2,955,294 38.4 2,887 2,753 18 47 - 69 genome Enterococcus faecium Aus0004 plasmid AUS0004_p1 [FIRMICUTES] (CP003352) circular 56,520 35.4 64 63 - - - 1 genome Enterococcus faecium Aus0004 plasmid AUS0004_p2 [FIRMICUTES] (CP003353) circular 3,847 39.0 4 4 - - - - genome Enterococcus faecium Aus0004 plasmid AUS0004_p3 [FIRMICUTES] (CP003354) circular 4,119 36.8 5 5 - - - - genome Enterococcus faecium DO chromosome [FIRMICUTES] (CP003583) circular 2,698,137 38.2 12 2,703 18 62 - 2,795 genome Enterococcus faecium DO plasmid 1 [FIRMICUTES] (CP003584) circular 36,262 36.5 44 43 - - 1 - genome Enterococcus faecium DO plasmid 2 [FIRMICUTES] (CP003585) circular 66,247 34.4 87 85 - 2 - - genome Enterococcus faecium DO plasmid 3 [FIRMICUTES] (CP003586) circular 251,926 36.0 283 283 - - - - genome Enterococcus faecium plasmid pCIZ2 [FIRMICUTES] (DQ832184) circular 7,383 32.3 10 10 - - - - plasmid Enterococcus faecium plasmid pEF1 [FIRMICUTES] (DQ198088) circular 21,344 32.1 34 34 - - - - plasmid Enterococcus faecium plasmid pHT beta [FIRMICUTES] (AB183714) circular 52,890 31.3 61 60 - - - - plasmid Enterococcus faecium plasmid pIP816 [FIRMICUTES] (AM932524) circular 34,616 35.9 30 28 - - - 2 plasmid Enterococcus faecium plasmid pJS33 [FIRMICUTES] (EU370687) circular 3,175 32.9 3 3 - - - - plasmid Enterococcus faecium plasmid pJS42 [FIRMICUTES] (EU370688) circular 4,147 36.8 2 2 - - - - plasmid Enterococcus faecium plasmid pM7M2 [FIRMICUTES] (JF800907) circular 19,557 35.1 28 28 - - - - plasmid Enterococcus faecium plasmid pMG1 [FIRMICUTES] (AB206333) linear 65,029 31.6 72 72 - - - - plasmid Enterococcus faecium plasmid pNJAKD [FIRMICUTES] (HM748980) circular 3,825 39.8 5 5 - - - - plasmid Enterococcus faecium plasmid pRI1 [FIRMICUTES] (EU327398) circular 6,038 36.1 8 8 - - - - plasmid Enterococcus faecium plasmid pRUM [FIRMICUTES] (AF507977) circular 24,873 34.0 32 32 - - - - plasmid Enterococcus faecium plasmid pVEF1 [FIRMICUTES] (AM296544) circular 39,626 36.2 43 43 - - - - plasmid Enterococcus faecium plasmid pVEF2 [FIRMICUTES] (AM410096) circular 39,714 36.2 43 41 - - - 2 plasmid Enterococcus faecium plasmid pVEF3 [FIRMICUTES] (AM931300) circular 63,135 35.7 67 64 - - - 3 plasmid Enterococcus faecium plasmid pZB18 [FIRMICUTES] (AB611033) circular 68,058 33.6 63 63 - - - - plasmid Enterococcus hirae ATCC 9790 chromosome [FIRMICUTES] (CP003504) circular 2,827,741 36.9 2,669 2,452 18 71 - 128 genome Enterococcus hirae ATCC 9790 plasmid pTG9790 [FIRMICUTES] (HQ724512) circular 28,699 33.3 33 33 - - - - genome Erwinia amylovora ACW56400 plasmid EaACW_pEI70 [PROTEOBACTERIA] (CP002951) circular 65,840 52.2 72 71 - - - 1 plasmid

22 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Erwinia amylovora ATCC 49946 chromosome [PROTEOBACTERIA] (FN666575) circular 3,805,874 53.6 3,422 3,299 22 78 1 22 genome Erwinia amylovora ATCC 49946 plasmid 1 [PROTEOBACTERIA] (FN666576) circular 28,243 50.2 26 25 - - - 1 genome Erwinia amylovora ATCC 49946 plasmid 2 [PROTEOBACTERIA] (FN666577) circular 71,487 55.7 73 71 - - - 2 genome Erwinia amylovora ATCC BAA-2158 plasmid pEA29 [PROTEOBACTERIA] (FR719212) circular 28,138 50.2 30 30 - - - - plasmid Erwinia amylovora ATCC BAA-2158 plasmid pEAR5.2 [PROTEOBACTERIA] (FR719211) circular 5,251 52.2 7 6 - - - - plasmid Erwinia amylovora CFBP1430 chromosome [PROTEOBACTERIA] (FN434113) circular 3,805,573 53.6 3,420 3,298 22 77 1 22 genome Erwinia amylovora CFBP1430 plasmid pEA29 [PROTEOBACTERIA] (FN434114) circular 28,259 50.2 26 25 - - - 1 genome Erwinia amylovora plasmid pEA1.7 [PROTEOBACTERIA] (AY123046) circular 1,711 49.3 5 5 - - - - plasmid Erwinia amylovora plasmid pEA29 [PROTEOBACTERIA] (AF264948) circular 28,185 50.3 23 21 - - - - plasmid Erwinia amylovora plasmid pEL60 [PROTEOBACTERIA] (AY422214) circular 60,145 51.5 67 67 - - - - plasmid Erwinia amylovora plasmid pEU30 [PROTEOBACTERIA] (AY422215) circular 30,314 48.2 25 25 - - - - plasmid Erwinia billingiae Eb661 chromosome [PROTEOBACTERIA] (FP236843) circular 5,100,167 55.2 4,647 4,501 21 77 1 47 genome Erwinia billingiae Eb661 plasmid pEB102 [PROTEOBACTERIA] (FP236826) circular 102,323 51.7 109 106 - - - 3 genome Erwinia billingiae Eb661 plasmid pEB170 [PROTEOBACTERIA] (FP236830) circular 169,778 52.3 159 148 - - - 11 genome Erwinia pyrifoliae DSM 12163 chromosome [PROTEOBACTERIA] (FN392235) circular 4,026,286 53.4 3,676 3,498 22 75 1 80 genome Erwinia pyrifoliae DSM 12163 plasmid pEP2.6e [PROTEOBACTERIA] (FN392236) circular 2,610 44.8 3 2 - - - 1 genome Erwinia pyrifoliae DSM 12163 plasmid pEP3 [PROTEOBACTERIA] (FN392237) circular 3,070 49.0 4 4 - - - - genome Erwinia pyrifoliae DSM 12163 plasmid pEP36e [PROTEOBACTERIA] (FN392238) circular 35,901 49.9 34 29 - - - 5 genome Erwinia pyrifoliae Ep1/96 chromosome [PROTEOBACTERIA] (FP236842) circular 4,026,322 53.4 3,677 3,519 22 75 1 60 genome Erwinia pyrifoliae Ep1/96 plasmid pEP03 [PROTEOBACTERIA] (FP236827) circular 3,070 49.0 4 4 - - - - genome Erwinia pyrifoliae Ep1/96 plasmid pEP2.6 [PROTEOBACTERIA] (FP928999) circular 2,590 44.9 3 3 - - - - genome Erwinia pyrifoliae Ep1/96 plasmid pEP36 [PROTEOBACTERIA] (AY123045) circular 35,904 49.8 32 32 - - - - plasmid Erwinia pyrifoliae Ep1/96 plasmid pEP36 [PROTEOBACTERIA] (FP236829) circular 35,909 49.9 34 33 - - - 1 genome Erwinia sp. Ejp 556 plasmid pEJ30 [PROTEOBACTERIA] (AY255829) circular 29,593 49.7 22 22 - - - - plasmid Erwinia sp. Ejp617 chromosome [PROTEOBACTERIA] (CP002124) circular 3,909,168 53.6 3,561 3,365 22 76 1 97 genome Erwinia sp. Ejp617 plasmid pJE01 [PROTEOBACTERIA] (CP002125) circular 30,866 49.9 31 27 - - - 4 genome Erwinia tasmaniensis Et1/99 chromosome [PROTEOBACTERIA] (CU468135) circular 3,883,467 53.7 3,521 3,355 22 81 1 62 genome Erwinia tasmaniensis Et1/99 plasmid pET09 [PROTEOBACTERIA] (CU468128) circular 9,299 47.0 7 7 - - - - genome Erwinia tasmaniensis Et1/99 plasmid pET35 [PROTEOBACTERIA] (CU468130) circular 35,494 40.0 40 40 - - - - genome Erwinia tasmaniensis Et1/99 plasmid pET45 [PROTEOBACTERIA] (CU468132) circular 44,694 50.8 44 44 - - - - genome Erwinia tasmaniensis Et1/99 plasmid pET46 [PROTEOBACTERIA] (CU468133) circular 46,159 49.0 45 41 - - - 4 genome Erwinia tasmaniensis Et1/99 plasmid pET49 [PROTEOBACTERIA] (CU468131) circular 48,751 43.7 59 58 - - - 1 genome Erysipelothrix rhusiopathiae S-1 plasmid pAP1 [FIRMICUTES] (AF028735) circular 1,987 31.5 1 1 - - - - plasmid Erysipelothrix rhusiopathiae str. Fujisawa chromosome [FIRMICUTES] (AP012027) circular 1,787,941 36.6 1,747 1,661 21 55 - 9 genome Erythrobacter litoralis HTCC2594 chromosome [PROTEOBACTERIA] (CP000157) circular 3,052,398 63.1 2,956 2,885 3 43 1 24 genome Escherichia coli 042 chromosome [PROTEOBACTERIA] (FN554766) circular 5,241,977 50.6 5,211 5,005 22 93 - 91 genome Escherichia coli 042 plasmid pAA [PROTEOBACTERIA] (FN554767) circular 113,346 49.5 142 126 - - - 16 genome Escherichia coli 1520 plasmid p3521 [PROTEOBACTERIA] (GU256641) circular 110,416 52.6 128 119 - - - 9 plasmid Escherichia coli 1520 plasmid pIP1206 [PROTEOBACTERIA] (AM886293) circular 168,113 51.3 172 172 - - - - plasmid Escherichia coli 536 chromosome [PROTEOBACTERIA] (CP000247) circular 4,938,920 50.5 4,796 4,542 22 80 - 152 genome Escherichia coli 53638 plasmid p53638_226 [PROTEOBACTERIA] (CP001064) circular 225,683 48.3 270 225 - - 2 43 plasmid Escherichia coli 53638 plasmid p53638_75 [PROTEOBACTERIA] (CP001065) circular 75,089 51.5 97 88 - - 2 7 plasmid Escherichia coli 55989 chromosome [PROTEOBACTERIA] (CU928145) circular 5,154,862 50.7 5,150 4,953 22 94 - 81 genome Escherichia coli ABU 83972 chromosome [PROTEOBACTERIA] (CP001671) circular 5,131,397 50.6 5,054 4,861 22 88 - 83 genome Escherichia coli ABU 83972 plasmid pABU [PROTEOBACTERIA] (CP001833) circular 1,564 50.9 1 1 - - - - genome Escherichia coli APEC O1 chromosome [PROTEOBACTERIA] (CP000468) circular 5,082,025 50.5 5,114 4,878 22 96 - 118 genome Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM [PROTEOBACTERIA] (DQ381420) circular 174,241 49.6 191 177 - - 1 13 genome Escherichia coli APEC O1 plasmid pAPEC-O1-R [PROTEOBACTERIA] (DQ517526) circular 241,387 46.4 240 237 - - - 3 genome Escherichia coli ATCC 8739 chromosome [PROTEOBACTERIA] (CP000946) circular 4,746,218 50.9 4,629 4,434 22 86 2 85 genome Escherichia coli B str. REL606 chromosome [PROTEOBACTERIA] (CP000819) circular 4,629,812 50.8 4,550 4,344 22 85 - 99 genome Escherichia coli B171 plasmid pB171 [PROTEOBACTERIA] (AB024946) linear 68,817 46.0 97 83 - - - 14 plasmid Escherichia coli BL21-Gold(DE3)pLysS AG chromosome [PROTEOBACTERIA] (CP001665) circular 4,570,938 50.8 4,536 4,322 22 85 1 106 genome Escherichia coli BL21(DE3) chromosome [PROTEOBACTERIA] (AM946981) circular 4,558,947 50.8 4,504 4,302 22 85 - 95 genome Escherichia coli BL21(DE3) chromosome [PROTEOBACTERIA] (CP001509) circular 4,558,953 50.8 4,504 4,302 22 85 - 95 genome Escherichia coli BW2952 chromosome [PROTEOBACTERIA] (CP001396) circular 4,578,159 50.8 4,541 4,347 22 86 - 86 genome Escherichia coli CFT073 chromosome [PROTEOBACTERIA] (AE014075) circular 5,231,428 50.5 5,179 4,897 21 88 - 173 genome Escherichia coli clone D i14 chromosome [PROTEOBACTERIA] (CP002212) circular 5,038,386 50.6 4,932 4,742 22 88 - 80 genome Escherichia coli clone D i2 chromosome [PROTEOBACTERIA] (CP002211) circular 5,038,386 50.6 4,931 4,740 22 88 - 81 genome Escherichia coli DH1 chromosome [PROTEOBACTERIA] (AP012030) circular 4,621,430 50.8 4,557 4,351 22 86 7 91 genome Escherichia coli DH1 chromosome [PROTEOBACTERIA] (CP001637) circular 4,630,707 50.8 4,563 4,369 22 87 1 84 genome Escherichia coli E24377A plasmid pETEC_35 [PROTEOBACTERIA] (CP000796) circular 34,367 51.6 34 32 - - - 2 genome Escherichia coli E24377A plasmid pETEC_6 [PROTEOBACTERIA] (CP000798) circular 6,199 52.6 5 5 - - - - genome Escherichia coli E24377A plasmid pETEC_73 [PROTEOBACTERIA] (CP000797) circular 70,609 50.2 87 77 - - - 10 genome Escherichia coli E24377A plasmid pETEC_74 [PROTEOBACTERIA] (CP000799) circular 74,224 49.8 93 81 - - - 12 genome Escherichia coli E24377A plasmid pETEC_80 [PROTEOBACTERIA] (CP000795) circular 79,237 47.3 103 91 - - - 12 genome Escherichia coli ED1a chromosome [PROTEOBACTERIA] (CU928162) circular 5,209,548 50.7 5,293 5,012 22 89 - 170 genome Escherichia coli ED1a plasmid p55989p [PROTEOBACTERIA] (CU928159) circular 72,482 46.1 106 103 - - 3 - plasmid Escherichia coli ED1a plasmid pECOED [PROTEOBACTERIA] (CU928147) circular 119,594 49.2 151 138 - - 1 12 plasmid Escherichia coli ED1a plasmid pETN48 [PROTEOBACTERIA] (FQ482074) circular 165,657 50.2 197 168 - - 3 26 plasmid Escherichia coli ETEC 1392/75 plasmid p1081 [PROTEOBACTERIA] (FN822745) circular 101,857 47.7 133 109 - - - 24 plasmid Escherichia coli ETEC 1392/75 plasmid p557 [PROTEOBACTERIA] (FN822746) circular 55,709 48.2 59 52 - - - 7 plasmid Escherichia coli ETEC 1392/75 plasmid p746 [PROTEOBACTERIA] (FN822748) circular 74,575 48.0 90 73 - - - 17 plasmid Escherichia coli ETEC 1392/75 plasmid p75 [PROTEOBACTERIA] (FN822749) circular 7,497 49.7 8 8 - - - - plasmid Escherichia coli ETEC H10407 chromosome [PROTEOBACTERIA] (FN649414) circular 5,153,435 50.8 5,183 4,940 22 90 - 129 genome Escherichia coli ETEC H10407 plasmid p52 [PROTEOBACTERIA] (FN649415) circular 5,175 48.4 6 5 - - - 1 genome Escherichia coli ETEC H10407 plasmid p58 [PROTEOBACTERIA] (FN649416) circular 5,800 48.9 7 7 - - - - genome Escherichia coli ETEC H10407 plasmid p666 [PROTEOBACTERIA] (FN649417) circular 66,681 51.0 83 74 - - - 9 genome Escherichia coli ETEC H10407 plasmid p948 [PROTEOBACTERIA] (FN649418) circular 94,797 46.9 108 98 - - - 10 genome Escherichia coli ETEC H10407 plasmid pEntH10407 [PROTEOBACTERIA] (AP010910) circular 67,094 51.2 99 99 - - - - plasmid Escherichia coli F18+ plasmid pTC1 [PROTEOBACTERIA] (CP000913) circular 91,019 50.2 112 112 - - - - plasmid Escherichia coli HS chromosome [PROTEOBACTERIA] (CP000802) circular 4,643,538 50.8 4,566 4,366 22 87 - 91 genome Escherichia coli IAI1 chromosome [PROTEOBACTERIA] (CU928160) circular 4,700,560 50.8 4,605 4,450 22 85 - 48 genome Escherichia coli IAI39 chromosome [PROTEOBACTERIA] (CU928164) circular 5,132,068 50.6 5,092 4,725 22 88 97 160 genome Escherichia coli IHE3034 chromosome [PROTEOBACTERIA] (CP001969) circular 5,108,383 50.7 5,108 4,911 22 97 - 78 genome Escherichia coli K-12 substr. DH10B chromosome [PROTEOBACTERIA] (CP000948) circular 4,686,137 50.8 4,652 4,450 22 87 - 93 genome Escherichia coli K-12 substr. MG1655 chromosome [PROTEOBACTERIA] (U00096) circular 4,641,652 50.8 4,498 4,140 22 89 67 184 genome Escherichia coli K-12 substr. W3110 chromosome [PROTEOBACTERIA] (AP009048) circular 4,646,332 50.8 4,591 4,410 22 87 - 72 genome

23 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Escherichia coli KO11FL chromosome [PROTEOBACTERIA] (CP002516) circular 4,920,168 50.8 4,884 4,729 22 85 1 47 genome Escherichia coli KO11FL chromosome [PROTEOBACTERIA] (CP002970) circular 5,021,812 50.8 4,935 4,726 22 85 - 102 genome Escherichia coli KO11FL plasmid pEKO1101 [PROTEOBACTERIA] (CP002517) circular 103,795 50.0 119 115 - - - 4 genome Escherichia coli KO11FL plasmid pEKO1102 [PROTEOBACTERIA] (CP002518) circular 5,360 46.0 6 6 - - - - genome Escherichia coli KO11FL plasmid pRK2 [PROTEOBACTERIA] (CP002971) circular 5,360 46.0 6 6 - - - - genome Escherichia coli LF82 chromosome [PROTEOBACTERIA] (CU651637) circular 4,773,108 50.7 4,704 4,544 22 85 - 53 genome Escherichia coli NA114 chromosome [PROTEOBACTERIA] (CP002797) circular 4,971,461 51.2 5,010 4,720 22 80 - 188 genome Escherichia coli O103:H2 str. 12009 chromosome [PROTEOBACTERIA] (AP010958) circular 5,449,314 50.7 5,578 5,349 22 98 1 108 genome Escherichia coli O103:H2 str. 12009 plasmid pO103 [PROTEOBACTERIA] (AP010959) circular 75,546 49.1 83 74 - - - 9 genome Escherichia coli O104:H4 str. 2009EL-2050 chromosome [PROTEOBACTERIA] (CP003297) circular 5,253,138 50.7 5,273 5,072 22 93 - 86 genome Escherichia coli O104:H4 str. 2009EL-2050 plasmid p09EL50 [PROTEOBACTERIA] (CP003298) circular 109,274 45.3 129 124 - 3 - 2 genome Escherichia coli O104:H4 str. 2009EL-2050 plasmid pAA-09EL50 [PROTEOBACTERIA] (CP003299) circular 74,213 47.1 93 84 - - - 9 genome Escherichia coli O104:H4 str. 2009EL-2050 plasmid pG-09EL50 [PROTEOBACTERIA] (CP003300) circular 1,549 50.8 3 3 - - - - genome Escherichia coli O104:H4 str. 2009EL-2071 chromosome [PROTEOBACTERIA] (CP003301) circular 5,312,586 50.7 5,352 5,138 22 97 - 95 genome Escherichia coli O104:H4 str. 2009EL-2071 plasmid pAA-09EL71 [PROTEOBACTERIA] (CP003302) circular 75,573 47.2 95 87 - - - 8 genome Escherichia coli O104:H4 str. 2009EL-2071 plasmid pG-09EL71 [PROTEOBACTERIA] (CP003303) circular 1,549 50.8 2 2 - - - - genome Escherichia coli O104:H4 str. 2011C-3493 chromosome [PROTEOBACTERIA] (CP003289) circular 5,273,097 50.7 5,092 4,974 22 94 - 2 genome Escherichia coli O104:H4 str. 2011C-3493 plasmid pAA-EA11 [PROTEOBACTERIA] (CP003291) circular 74,217 47.1 82 80 - - - - genome Escherichia coli O104:H4 str. 2011C-3493 plasmid pESBL-EA11 [PROTEOBACTERIA] (CP003290) circular 88,544 49.7 94 94 - - - - genome Escherichia coli O104:H4 str. 2011C-3493 plasmid pG-EA11 [PROTEOBACTERIA] (CP003292) circular 1,549 50.8 1 1 - - - - genome Escherichia coli O111:H- str. 11128 chromosome [PROTEOBACTERIA] (AP010960) circular 5,371,077 50.6 5,538 5,246 22 106 1 163 genome Escherichia coli O111:H- str. 11128 plasmid pO111_1 [PROTEOBACTERIA] (AP010961) circular 204,604 47.0 229 219 - - - 10 genome Escherichia coli O111:H- str. 11128 plasmid pO111_2 [PROTEOBACTERIA] (AP010962) circular 97,897 48.2 118 111 - 4 - 3 genome Escherichia coli O111:H- str. 11128 plasmid pO111_3 [PROTEOBACTERIA] (AP010963) circular 77,690 50.0 89 77 - - - 12 genome Escherichia coli O111:H- str. 11128 plasmid pO111_4 [PROTEOBACTERIA] (AP010964) circular 8,140 49.6 10 10 - - - - genome Escherichia coli O111:H- str. 11128 plasmid pO111_5 [PROTEOBACTERIA] (AP010965) circular 6,673 50.2 10 10 - - - - genome Escherichia coli O127:H6 str. E2348/69 chromosome [PROTEOBACTERIA] (FM180568) circular 4,965,553 50.6 5,055 4,809 22 91 - 133 genome Escherichia coli O127:H6 str. E2348/69 plasmid pE2348-2 [PROTEOBACTERIA] (FM180570) circular 6,147 52.8 5 5 - - - - genome Escherichia coli O127:H6 str. E2348/69 plasmid pMAR2 [PROTEOBACTERIA] (FM180569) circular 97,978 48.0 126 110 - - - 16 genome Escherichia coli O139:H28 str. E24377A chromosome [PROTEOBACTERIA] (CP000800) circular 4,979,619 50.6 4,949 4,729 22 88 1 109 genome Escherichia coli O157:H7 str. EC4115 chromosome [PROTEOBACTERIA] (CP001164) circular 5,572,075 50.5 5,746 5,488 22 105 5 126 genome Escherichia coli O157:H7 str. EC4115 plasmid pEC4115 [PROTEOBACTERIA] (CP001165) circular 37,452 39.7 43 43 - - - - genome Escherichia coli O157:H7 str. EC4115 plasmid pO157 [PROTEOBACTERIA] (CP001163) circular 94,644 47.9 104 100 - - 1 3 genome Escherichia coli O157:H7 str. EDL933 chromosome [PROTEOBACTERIA] (AE005174) circular 5,528,445 50.4 5,649 5,343 22 100 8 176 genome Escherichia coli O157:H7 str. EDL933 plasmid pO157 [PROTEOBACTERIA] (AF074613) circular 92,077 47.6 98 95 - - - 3 genome Escherichia coli O157:H7 str. Sakai chromosome [PROTEOBACTERIA] (BA000007) circular 5,498,450 50.5 5,360 5,204 22 105 14 14 genome Escherichia coli O157:H7 str. Sakai plasmid pO157 [PROTEOBACTERIA] (AB011549) circular 92,721 47.6 85 85 - - - - genome Escherichia coli O157:H7 str. TW14359 chromosome [PROTEOBACTERIA] (CP001368) circular 5,528,136 50.5 5,689 5,437 22 106 - 124 genome Escherichia coli O157:H7 str. TW14359 plasmid pO157 [PROTEOBACTERIA] (CP001369) circular 94,601 47.9 103 100 - - - 3 genome Escherichia coli O157:H7 str. TW14588 plasmid pTW14588 [PROTEOBACTERIA] (DS999999) linear 92,381 47.6 99 95 - - 1 3 plasmid Escherichia coli O25b:H4-ST131 str. EC958 plasmid pKC394 [PROTEOBACTERIA] (HM138652) circular 53,207 52.0 57 55 - - - 1 plasmid Escherichia coli O26:H11 str. 11368 chromosome [PROTEOBACTERIA] (AP010953) circular 5,697,240 50.7 5,904 5,662 22 101 1 118 genome Escherichia coli O26:H11 str. 11368 plasmid pO26_1 [PROTEOBACTERIA] (AP010954) circular 85,167 47.5 95 84 - - - 11 genome Escherichia coli O26:H11 str. 11368 plasmid pO26_2 [PROTEOBACTERIA] (AP010955) circular 63,365 52.5 82 76 - - - 6 genome Escherichia coli O26:H11 str. 11368 plasmid pO26_3 [PROTEOBACTERIA] (AP010956) circular 5,686 46.2 7 7 - - - - genome Escherichia coli O26:H11 str. 11368 plasmid pO26_4 [PROTEOBACTERIA] (AP010957) circular 4,073 44.1 4 4 - - - - genome Escherichia coli O55:H7 str. CB9615 chromosome [PROTEOBACTERIA] (CP001846) circular 5,386,352 50.5 5,409 5,188 22 100 - 99 genome Escherichia coli O55:H7 str. CB9615 plasmid pO55 [PROTEOBACTERIA] (CP001847) circular 66,001 48.9 83 74 - - - 9 genome Escherichia coli O55:H7 str. RM12579 chromosome [PROTEOBACTERIA] (CP003109) circular 5,263,980 50.5 5,239 5,019 22 100 - 98 genome Escherichia coli O55:H7 str. RM12579 plasmid p12579_1 [PROTEOBACTERIA] (CP003110) circular 94,015 48.1 107 99 - 3 - 5 genome Escherichia coli O55:H7 str. RM12579 plasmid p12579_2 [PROTEOBACTERIA] (CP003111) circular 66,078 48.9 83 73 - - - 10 genome Escherichia coli O55:H7 str. RM12579 plasmid p12579_3 [PROTEOBACTERIA] (CP003112) circular 12,068 48.9 12 12 - - - - genome Escherichia coli O55:H7 str. RM12579 plasmid p12579_4 [PROTEOBACTERIA] (CP003113) circular 6,211 52.5 5 5 - - - - genome Escherichia coli O55:H7 str. RM12579 plasmid p12579_5 [PROTEOBACTERIA] (CP003114) circular 5,954 45.8 5 5 - - - - genome Escherichia coli O7:K1 str. CE10 chromosome [PROTEOBACTERIA] (CP003034) circular 5,313,531 50.6 5,349 5,082 22 92 - 153 genome Escherichia coli O7:K1 str. CE10 plasmid pCE10A [PROTEOBACTERIA] (CP003035) circular 54,289 49.2 63 60 - - - 3 genome Escherichia coli O7:K1 str. CE10 plasmid pCE10B [PROTEOBACTERIA] (CP003036) circular 5,163 47.5 5 5 - - - - genome Escherichia coli O7:K1 str. CE10 plasmid pCE10D [PROTEOBACTERIA] (CP003038) circular 1,549 51.1 2 2 - - - - genome Escherichia coli O83:H1 str. NRG 857C chromosome [PROTEOBACTERIA] (CP001855) circular 4,747,819 50.7 4,536 4,429 22 84 - 1 genome Escherichia coli O83:H1 str. NRG 857C plasmid pO83_CORR [PROTEOBACTERIA] (CP001856) linear 147,060 50.9 154 153 - - - 1 genome Escherichia coli P12b chromosome [PROTEOBACTERIA] (CP002291) circular 4,935,294 50.9 4,953 4,549 22 84 - 298 genome Escherichia coli plasmid ColE1 [PROTEOBACTERIA] (J01566) circular 6,646 48.4 24 23 - - 2 - plasmid Escherichia coli plasmid ColE9-J [PROTEOBACTERIA] (FJ573246) circular 7,577 49.7 8 7 - - - 1 plasmid Escherichia coli plasmid IncQ-type pQ7 [PROTEOBACTERIA] (FJ696404) circular 9,042 61.6 8 8 - - - - plasmid Escherichia coli plasmid MccC7-H22 [PROTEOBACTERIA] (EF536825) circular 32,014 43.5 38 38 - - - - plasmid Escherichia coli plasmid N3 [PROTEOBACTERIA] (FR850039) circular 54,205 51.1 62 61 - - - 1 plasmid Escherichia coli plasmid NR1 [PROTEOBACTERIA] (DQ364638) circular 94,289 52.0 123 123 - - - - plasmid Escherichia coli plasmid p1658/97 [PROTEOBACTERIA] (AF550679) circular 125,491 50.6 143 141 - - 2 - plasmid Escherichia coli plasmid p271A [PROTEOBACTERIA] (JF785549) circular 35,947 50.2 42 40 - - - - plasmid Escherichia coli plasmid p417H-90 [PROTEOBACTERIA] (JQ418522) circular 79,478 50.8 125 125 - - - - plasmid Escherichia coli plasmid p5217 [PROTEOBACTERIA] (EU580135) circular 5,217 49.4 6 6 - - - - plasmid Escherichia coli plasmid p838C-R1 [PROTEOBACTERIA] (HQ201416) circular 30,016 55.5 31 30 - - - - plasmid Escherichia coli plasmid pAm08CD7339 [PROTEOBACTERIA] (GQ149345) circular 7,339 46.6 6 6 - - - - plasmid Escherichia coli plasmid pAm08CD9902 [PROTEOBACTERIA] (GQ149344) circular 9,902 57.1 11 11 - - - - plasmid Escherichia coli plasmid pAPEC-1 [PROTEOBACTERIA] (CP000836) circular 103,275 48.8 167 164 - - - 3 plasmid Escherichia coli plasmid pAPEC-O103-ColBM [PROTEOBACTERIA] (CP001232) linear 124,705 50.8 131 126 - - - 5 plasmid Escherichia coli plasmid pAPEC-O2-ColV [PROTEOBACTERIA] (AY545598) circular 184,501 49.3 210 209 - - - - plasmid Escherichia coli plasmid pAPEC-O2-R [PROTEOBACTERIA] (AY214164) circular 101,375 52.9 119 119 - - - - plasmid Escherichia coli plasmid pAPEC1990_61 [PROTEOBACTERIA] (HQ023863) circular 161,081 53.1 172 172 - - - - plasmid Escherichia coli plasmid pAR060302 [PROTEOBACTERIA] (FJ621588) circular 166,530 53.1 189 189 - - - - plasmid Escherichia coli plasmid pASL01a [PROTEOBACTERIA] (JQ480155) circular 27,072 56.7 31 30 - - - 1 plasmid Escherichia coli plasmid pC15-1a [PROTEOBACTERIA] (AY458016) circular 92,353 52.6 102 100 - - - - plasmid Escherichia coli plasmid pCERC1 [PROTEOBACTERIA] (JN012467) circular 6,790 52.0 12 7 - - 2 - plasmid Escherichia coli plasmid pChi7122-2 [PROTEOBACTERIA] (FR851303) circular 82,676 52.8 105 105 - - - - plasmid Escherichia coli plasmid pChi7122-3 [PROTEOBACTERIA] (FR851304) circular 56,676 42.7 86 86 - - - - plasmid Escherichia coli plasmid pCol-let [PROTEOBACTERIA] (AF197335) circular 5,847 46.7 9 7 - - 2 - plasmid Escherichia coli plasmid pColE8 [PROTEOBACTERIA] (FJ985252) circular 6,751 51.1 5 5 - - - - plasmid

24 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Escherichia coli plasmid pCoo [PROTEOBACTERIA] (CR942285) circular 98,396 46.7 125 94 - - 2 29 plasmid Escherichia coli plasmid pCT [PROTEOBACTERIA] (FN868832) circular 93,629 52.7 113 100 - - 1 13 plasmid Escherichia coli plasmid pDKX1-TEM-52 [PROTEOBACTERIA] (JQ269336) circular 38,611 42.3 40 40 - - - - plasmid Escherichia coli plasmid pE001 [PROTEOBACTERIA] (JF776874) circular 38,611 42.3 50 50 - - - - plasmid Escherichia coli plasmid pEC_B24 [PROTEOBACTERIA] (GU371926) circular 73,801 51.5 72 53 - - - - plasmid Escherichia coli plasmid pEC_Bactec [PROTEOBACTERIA] (GU371927) circular 92,970 50.0 72 31 - - - - plasmid Escherichia coli plasmid pEC_L46 [PROTEOBACTERIA] (GU371929) circular 144,871 51.3 155 126 - - - - plasmid Escherichia coli plasmid pEC_L8 [PROTEOBACTERIA] (GU371928) circular 118,525 52.0 128 117 - - - - plasmid Escherichia coli plasmid pEC14_114 [PROTEOBACTERIA] (GQ398086) circular 114,222 51.0 117 117 - - - - plasmid Escherichia coli plasmid pEC14_35 [PROTEOBACTERIA] (JN935899) circular 34,945 43.9 45 45 - - - - plasmid Escherichia coli plasmid pEC158 [PROTEOBACTERIA] (HQ425708) circular 5,706 46.2 10 8 - - 2 - plasmid Escherichia coli plasmid pEC34A [PROTEOBACTERIA] (HQ622575) circular 3,770 42.0 4 4 - - - - plasmid Escherichia coli plasmid pEC34B [PROTEOBACTERIA] (HQ622576) circular 6,952 45.9 10 10 - - - - plasmid Escherichia coli plasmid pEC886 [PROTEOBACTERIA] (HQ659758) circular 9,261 47.0 7 7 - - - - plasmid Escherichia coli plasmid pECTm80 [PROTEOBACTERIA] (FJ914220) circular 21,423 42.7 30 28 - - - 1 plasmid Escherichia coli plasmid peH4H [PROTEOBACTERIA] (FJ621586) circular 148,105 53.3 173 173 - - - - plasmid Escherichia coli plasmid pEK204 [PROTEOBACTERIA] (EU935740) circular 93,732 49.8 96 95 - - 1 - plasmid Escherichia coli plasmid pEK499 [PROTEOBACTERIA] (EU935739) circular 117,536 52.7 141 141 - - - - plasmid Escherichia coli plasmid pEK516 [PROTEOBACTERIA] (EU935738) circular 64,471 52.7 79 79 - - - - plasmid Escherichia coli plasmid pFL129 [PROTEOBACTERIA] (AY608912) circular 6,464 52.5 4 4 - - - - plasmid Escherichia coli plasmid pGUE-NDM [PROTEOBACTERIA] (JQ364967) circular 87,021 52.9 95 88 - - - - plasmid Escherichia coli plasmid pHCG11 [PROTEOBACTERIA] (JN596280) circular 7,995 53.0 10 10 - - - - plasmid Escherichia coli plasmid pHHA45 [PROTEOBACTERIA] (JX065630) circular 39,510 51.4 49 48 - - - - plasmid Escherichia coli plasmid pHK01 [PROTEOBACTERIA] (HM355591) circular 70,262 52.3 101 97 - - - 4 plasmid Escherichia coli plasmid pHK08 [PROTEOBACTERIA] (JN087529) circular 69,812 52.3 100 98 - - - 2 plasmid Escherichia coli plasmid pHK09 [PROTEOBACTERIA] (JN087528) circular 70,382 52.3 100 98 - - - 2 plasmid Escherichia coli plasmid pHK17a [PROTEOBACTERIA] (JF779678) circular 70,060 52.3 100 97 - - - 3 plasmid Escherichia coli plasmid pHK23a [PROTEOBACTERIA] (JQ432559) circular 73,607 51.8 104 103 - - - 1 plasmid Escherichia coli plasmid pHN7A8 [PROTEOBACTERIA] (JN232517) circular 76,878 52.1 102 100 - - 1 1 plasmid Escherichia coli plasmid pHUSEC41-1 [PROTEOBACTERIA] (HE603110) circular 91,942 53.0 131 131 - - - - plasmid Escherichia coli plasmid pHUSEC41-2 [PROTEOBACTERIA] (HE603111) circular 73,564 46.2 140 140 - - - - plasmid Escherichia coli plasmid pHUSEC41-3 [PROTEOBACTERIA] (HE603112) circular 7,930 41.7 15 15 - - - - plasmid Escherichia coli plasmid pHUSEC41-4 [PROTEOBACTERIA] (HE603113) circular 5,153 45.8 9 9 - - - - plasmid Escherichia coli plasmid pIGAL1 [PROTEOBACTERIA] (AY424310) circular 8,145 50.5 3 3 - - - - plasmid Escherichia coli plasmid pIGJC156 [PROTEOBACTERIA] (EU090225) circular 5,146 47.2 3 3 - - - - plasmid Escherichia coli plasmid pIGMS5 [PROTEOBACTERIA] (DQ916145) circular 6,750 51.3 5 5 - - - - plasmid Escherichia coli plasmid pIGWZ12 [PROTEOBACTERIA] (DQ311641) circular 4,072 49.8 2 2 - - - - plasmid Escherichia coli plasmid pIS2 [PROTEOBACTERIA] (AY167049) circular 6,349 47.4 8 8 - - - - plasmid Escherichia coli plasmid pJD8 [PROTEOBACTERIA] (HQ328804) circular 1,546 51.7 1 1 - - - - plasmid Escherichia coli plasmid pKC396 [PROTEOBACTERIA] (HM138653) circular 44,216 51.1 50 49 - - - - plasmid Escherichia coli plasmid pKL1 [PROTEOBACTERIA] (U81610) circular 1,549 50.9 1 1 - - - - plasmid Escherichia coli plasmid pKST23 [PROTEOBACTERIA] (JN253636) circular 2,779 42.1 4 4 - - - - plasmid Escherichia coli plasmid pLEW517 [PROTEOBACTERIA] (DQ390454) circular 63,946 53.8 71 71 - - - - plasmid Escherichia coli plasmid pLG13 [PROTEOBACTERIA] (AF251289) circular 6,293 43.7 7 7 - - - - plasmid Escherichia coli plasmid plLF82 [PROTEOBACTERIA] (CU638872) circular 108,379 46.2 122 122 - - - - plasmid Escherichia coli plasmid Plm [PROTEOBACTERIA] (JQ901381) circular 98,809 49.1 132 130 - - - - plasmid Escherichia coli plasmid pLST424C-10 [PROTEOBACTERIA] (JQ418532) circular 8,848 49.1 14 14 - - - - plasmid Escherichia coli plasmid pLST424C-61 [PROTEOBACTERIA] (JQ418533) circular 59,260 53.4 64 64 - - - - plasmid Escherichia coli plasmid pMAR7 [PROTEOBACTERIA] (DQ388534) circular 101,558 48.1 116 100 - - 1 14 plasmid Escherichia coli plasmid pMAS2027 [PROTEOBACTERIA] (FJ666132) circular 42,644 43.4 58 58 - - - - plasmid Escherichia coli plasmid pMG828-2 [PROTEOBACTERIA] (DQ995352) circular 4,091 49.6 2 2 - - - - plasmid Escherichia coli plasmid pMG828-3 [PROTEOBACTERIA] (DQ995353) circular 5,219 48.8 8 8 - - - - plasmid Escherichia coli plasmid pMG828-4 [PROTEOBACTERIA] (DQ995354) circular 7,462 48.3 4 4 - - - - plasmid Escherichia coli plasmid pMUR050 [PROTEOBACTERIA] (AY522431) circular 56,634 49.4 63 60 - - - - plasmid Escherichia coli plasmid pND11_107 [PROTEOBACTERIA] (HQ114281) circular 107,138 50.8 116 115 - - - 1 plasmid Escherichia coli plasmid pND12_96 [PROTEOBACTERIA] (HQ114282) circular 92,290 50.3 93 93 - - - - plasmid Escherichia coli plasmid pNDM-1_Dok01 [PROTEOBACTERIA] (AP012208) circular 195,560 51.0 224 224 - - - - plasmid Escherichia coli plasmid pNDM-HK [PROTEOBACTERIA] (HQ451074) circular 88,803 51.5 101 96 - - - 5 plasmid Escherichia coli plasmid pNDM102337 [PROTEOBACTERIA] (JF714412) circular 165,974 51.8 191 186 - - - - plasmid Escherichia coli plasmid pNDM10505 [PROTEOBACTERIA] (JF503991) circular 166,744 51.8 193 187 - - - - plasmid Escherichia coli plasmid pNGX2-QnrS1 [PROTEOBACTERIA] (JQ269335) circular 34,294 43.2 41 40 - - - - plasmid Escherichia coli plasmid pO113 [PROTEOBACTERIA] (AY258503) linear 165,548 49.6 191 155 - - - 36 plasmid Escherichia coli plasmid pO26-CRL [PROTEOBACTERIA] (GQ259888) circular 111,481 49.7 123 110 - - - 13 plasmid Escherichia coli plasmid pO26-S1 [PROTEOBACTERIA] (EU999782) circular 1,549 51.1 1 1 - - - - plasmid Escherichia coli plasmid pO26-Vir [PROTEOBACTERIA] (FJ386569) circular 168,100 50.2 195 195 - - - - plasmid Escherichia coli plasmid pO26I [PROTEOBACTERIA] (FJ449539) circular 72,946 50.8 101 101 - - - - plasmid Escherichia coli plasmid pO86A1 [PROTEOBACTERIA] (AB255435) circular 120,730 49.3 164 163 - - 1 - plasmid Escherichia coli plasmid pOLA52 [PROTEOBACTERIA] (EU370913) circular 51,602 46.3 68 68 - - - - plasmid Escherichia coli plasmid pPG010208 [PROTEOBACTERIA] (HQ023861) circular 135,803 51.5 148 148 - - - - plasmid Escherichia coli plasmid pPWD4_103 [PROTEOBACTERIA] (HQ114284) circular 103,297 50.9 107 104 - - - 3 plasmid Escherichia coli plasmid pQ1-1 [PROTEOBACTERIA] (HM371192) circular 6,200 52.6 9 9 - - - - plasmid Escherichia coli plasmid pQNR2078 [PROTEOBACTERIA] (HE613857) circular 42,379 50.9 49 47 - - - 2 plasmid Escherichia coli plasmid pRAx [PROTEOBACTERIA] (FJ705806) circular 52,637 52.0 70 70 - - - - plasmid Escherichia coli plasmid pRPEC180_47 [PROTEOBACTERIA] (JN935898) circular 47,506 41.4 42 42 - - - - plasmid Escherichia coli plasmid pSFO157 [PROTEOBACTERIA] (AF401292) circular 121,239 49.7 96 96 - - - - plasmid Escherichia coli plasmid pSYM1 [PROTEOBACTERIA] (JN887338) circular 50,572 44.6 60 60 - - - - plasmid Escherichia coli plasmid pTN38148 [PROTEOBACTERIA] (FM246883) linear 10,669 49.8 11 11 - - - - plasmid Escherichia coli plasmid pVI678 [PROTEOBACTERIA] (EF090911) circular 6,222 52.5 9 9 - - - - plasmid Escherichia coli plasmid pVM01 [PROTEOBACTERIA] (EU330199) circular 151,002 49.5 150 150 - - - - plasmid Escherichia coli plasmid pXZ [PROTEOBACTERIA] (JF927996) circular 76,635 51.6 84 84 - - - - plasmid Escherichia coli plasmid pZS50 [PROTEOBACTERIA] (JN566044) circular 51,556 52.7 46 45 - - - - plasmid Escherichia coli plasmid R721 [PROTEOBACTERIA] (AP002527) circular 75,582 42.6 92 91 - - - - plasmid Escherichia coli pNMEC31_31 [PROTEOBACTERIA] (JN935897) circular 31,684 41.2 36 36 - - - - plasmid Escherichia coli S88 chromosome [PROTEOBACTERIA] (CU928161) circular 5,032,268 50.7 5,049 4,696 22 91 89 151 genome Escherichia coli S88 plasmid pECOS88 [PROTEOBACTERIA] (CU928146) circular 133,853 50.7 145 131 - - 1 13 genome Escherichia coli SE11 chromosome [PROTEOBACTERIA] (AP009240) circular 4,887,515 50.8 4,854 4,684 22 87 - 61 genome Escherichia coli SE11 plasmid pSE11-1 [PROTEOBACTERIA] (AP009241) circular 100,021 50.5 121 115 - - - 6 genome

25 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Escherichia coli SE11 plasmid pSE11-2 [PROTEOBACTERIA] (AP009242) circular 91,158 50.2 108 99 - - - 9 genome Escherichia coli SE11 plasmid pSE11-3 [PROTEOBACTERIA] (AP009243) circular 60,555 48.6 69 54 - - - 15 genome Escherichia coli SE11 plasmid pSE11-4 [PROTEOBACTERIA] (AP009244) circular 6,929 48.0 8 8 - - - - genome Escherichia coli SE11 plasmid pSE11-5 [PROTEOBACTERIA] (AP009245) circular 5,366 46.2 5 5 - - - - genome Escherichia coli SE11 plasmid pSE11-6 [PROTEOBACTERIA] (AP009246) circular 4,082 49.4 3 3 - - - - genome Escherichia coli SE15 chromosome [PROTEOBACTERIA] (AP009378) circular 4,717,338 50.7 4,612 4,429 22 85 - 76 genome Escherichia coli SE15 plasmid pECSF1 [PROTEOBACTERIA] (AP009379) circular 122,345 51.0 150 144 - - - 6 genome Escherichia coli SMS-3-5 chromosome [PROTEOBACTERIA] (CP000970) circular 5,068,389 50.5 4,961 4,744 22 89 - 106 genome Escherichia coli SMS-3-5 plasmid pSMS35_130 [PROTEOBACTERIA] (CP000971) circular 130,440 50.8 161 148 - - - 13 genome Escherichia coli SMS-3-5 plasmid pSMS35_4 [PROTEOBACTERIA] (CP000973) circular 4,074 49.6 3 3 - - - - genome Escherichia coli SMS-3-5 plasmid pSMS35_8 [PROTEOBACTERIA] (CP000972) circular 8,909 46.8 10 10 - - - - genome Escherichia coli UM146 chromosome [PROTEOBACTERIA] (CP002167) circular 4,993,013 50.6 4,918 4,653 22 84 - 159 genome Escherichia coli UM146 plasmid pUM146 [PROTEOBACTERIA] (CP002168) circular 114,550 51.0 139 126 - - - 13 genome Escherichia coli UMN026 chromosome [PROTEOBACTERIA] (CU928163) circular 5,202,090 50.7 5,089 4,819 22 88 79 81 genome Escherichia coli UMN026 plasmid p1ESCUM [PROTEOBACTERIA] (CU928148) circular 122,301 50.5 156 142 - - 5 9 genome Escherichia coli UMN026 plasmid p2ESCUM [PROTEOBACTERIA] (CU928149) circular 33,809 42.0 49 49 - - - - genome Escherichia coli UMNK88 chromosome [PROTEOBACTERIA] (CP002729) circular 5,186,416 50.7 5,262 5,011 22 96 - 133 genome Escherichia coli UMNK88 plasmid pUMNK88 [PROTEOBACTERIA] (HQ023862) circular 160,573 52.6 190 187 - - - 3 genome Escherichia coli UMNK88 plasmid pUMNK88_91e [PROTEOBACTERIA] (CP002731) circular 90,868 50.3 105 101 - - - 4 genome Escherichia coli UMNK88 plasmid pUMNK88_Ent [PROTEOBACTERIA] (CP002732) circular 81,475 50.4 102 89 - - - 13 genome Escherichia coli UMNK88 plasmid pUMNK88_Hly [PROTEOBACTERIA] (CP002733) circular 65,549 51.9 69 63 - - - 6 genome Escherichia coli UMNK88 plasmid pUMNK88_K88 [PROTEOBACTERIA] (CP002730) circular 81,883 49.5 108 91 - - - 17 genome Escherichia coli UTI89 chromosome [PROTEOBACTERIA] (CP000243) circular 5,065,741 50.6 5,007 4,827 22 89 - 69 genome Escherichia coli UTI89 plasmid pUTI89 [PROTEOBACTERIA] (CP000244) circular 114,230 51.0 142 136 - - - 6 genome Escherichia coli Vir68 plasmid pVir68 [PROTEOBACTERIA] (CP001162) circular 138,362 48.4 119 119 - - - - plasmid Escherichia coli W chromosome [PROTEOBACTERIA] (CP002185) circular 4,900,968 50.8 4,873 4,706 22 87 6 52 genome Escherichia coli W chromosome [PROTEOBACTERIA] (CP002967) circular 4,897,452 50.8 4,862 4,711 22 87 - 42 genome Escherichia coli W plasmid pRK1 [PROTEOBACTERIA] (CP002186) circular 102,536 49.9 116 113 - - 1 2 genome Escherichia coli W plasmid pRK1 [PROTEOBACTERIA] (CP002968) circular 102,535 49.9 116 114 - - - 2 genome Escherichia coli W plasmid pRK2 [PROTEOBACTERIA] (AY639886) circular 5,360 46.2 6 6 - - - - plasmid Escherichia coli W plasmid pRK2 [PROTEOBACTERIA] (CP002187) circular 5,360 46.0 7 6 - - 1 - genome Escherichia coli W plasmid pRK2 [PROTEOBACTERIA] (CP002969) circular 5,360 46.0 6 6 - - - - genome Escherichia coli Xuzhou21 chromosome [PROTEOBACTERIA] (CP001925) circular 5,386,223 50.5 5,474 5,259 22 93 - 100 genome Escherichia coli Xuzhou21 plasmid pO157 [PROTEOBACTERIA] (CP001926) circular 92,728 47.6 98 95 - - - 3 genome Escherichia coli Xuzhou21 plasmid pO157_Sal [PROTEOBACTERIA] (CP001927) circular 37,785 40.5 48 48 - - - - genome Escherichia fergusonii ATCC 35469 chromosome [PROTEOBACTERIA] (CU928158) circular 4,588,711 49.9 4,436 4,252 22 85 - 77 genome Escherichia fergusonii ATCC 35469 plasmid pEFER [PROTEOBACTERIA] (CU928144) circular 55,150 48.5 50 45 - - - 5 genome Escherichia sp. Sflu5 plasmid pAK51 [PROTEOBACTERIA] (AM743197) circular 6,511 49.8 6 6 - - - - plasmid Ethanoligenens harbinense YUAN-3 chromosome [FIRMICUTES] (CP002400) circular 3,008,576 55.6 2,831 2,708 9 60 2 52 genome Eubacterium eligens ATCC 27750 chromosome [FIRMICUTES] (CP001104) circular 2,144,190 37.7 1,983 1,907 15 47 2 12 genome Eubacterium eligens ATCC 27750 plasmid unnamed [FIRMICUTES] (CP001105) circular 60,455 40.8 86 84 - - - 2 genome Eubacterium eligens ATCC 27750 plasmid unnamed [FIRMICUTES] (CP001106) circular 626,744 36.8 610 595 - - - 15 genome Eubacterium limosum KIST612 chromosome [FIRMICUTES] (CP002273) circular 4,316,707 47.5 4,089 3,966 16 59 1 47 genome Eubacterium rectale ATCC 33656 chromosome [FIRMICUTES] (CP001107) circular 3,449,685 41.5 3,292 3,143 15 59 2 73 genome Exiguobacterium antarcticum B7 chromosome [FIRMICUTES] (CP003063) circular 2,815,863 47.5 2,900 2,736 27 67 - 70 genome Exiguobacterium arabatum plasmid pEspB [FIRMICUTES] (AM980832) circular 38,945 46.2 42 42 - - - - plasmid Exiguobacterium sibiricum 255-15 chromosome [FIRMICUTES] (CP001022) circular 3,034,136 47.7 3,100 2,979 27 69 1 24 genome Exiguobacterium sp. AT1b chromosome [FIRMICUTES] (CP001615) circular 2,999,895 48.5 3,092 2,989 27 68 1 7 genome Ferrimonas balearica DSM 9799 chromosome [PROTEOBACTERIA] (CP002209) circular 4,279,159 60.2 3,875 3,714 22 121 1 17 genome Fervidobacterium nodosum Rt17-B1 chromosome [] (CP000771) circular 1,948,941 35.0 1,854 1,770 6 50 3 25 genome Fervidobacterium pennivorans DSM 9078 chromosome [THERMOTOGAE] (CP003260) circular 2,166,381 38.9 2,031 1,943 6 48 2 32 genome Fibrella aestuarina BUZ 2 plasmid pFAES01e [BACTEROIDETES] (HE796684) circular 161,819 52.7 144 143 - - - 1 genome Fibrisoma limi plasmid pFLIM01 [BACTEROIDETES] (HE805916) circular 151,932 49.8 133 130 - - - 3 plasmid Fibrisoma limi plasmid pFLIM02 [BACTEROIDETES] (HE805917) circular 14,391 47.0 17 17 - - - - plasmid Fibrisoma limi plasmid pFLIM03 [BACTEROIDETES] (HE805918) circular 8,321 37.4 10 9 - - - 1 plasmid Fibrobacter succinogenes succinogenes S85 chromosome [] (CP001792) circular 3,842,635 48.1 3,133 3,058 9 58 1 7 genome Fibrobacter succinogenes succinogenes S85 chromosome [FIBROBACTERES] (CP002158) circular 3,843,004 48.0 3,159 3,078 9 58 1 13 genome Filifactor alocis ATCC 35896 chromosome [FIRMICUTES] (CP002390) circular 1,931,012 35.4 1,729 1,644 12 47 1 25 genome Finegoldia magna ATCC 29328 chromosome [FIRMICUTES] (AP008971) circular 1,797,577 32.3 1,705 1,634 12 47 1 11 genome Finegoldia magna ATCC 29328 plasmid pFMC [FIRMICUTES] (AP008972) circular 189,163 29.7 183 182 - - - 1 genome Flavobacteriaceae bacterium 3519-10 chromosome [BACTEROIDETES] (CP001673) circular 2,768,102 42.7 2,543 2,464 6 42 1 30 genome Flavobacterium branchiophilum FL-15 chromosome [BACTEROIDETES] (FQ859183) circular 3,559,884 32.9 3,117 3,028 9 43 1 36 genome Flavobacterium branchiophilum FL-15 plasmid pFB1 [BACTEROIDETES] (FQ859182) linear 3,408 33.5 5 5 - - - - genome Flavobacterium columnare ATCC 49512 chromosome [BACTEROIDETES] (CP003222) circular 3,162,432 31.5 2,772 2,632 15 74 1 50 genome Flavobacterium indicum GPTSA100-9 chromosome [BACTEROIDETES] (HE774682) circular 2,993,089 31.4 2,769 2,671 12 61 1 24 genome Flavobacterium johnsoniae UW101 chromosome [BACTEROIDETES] (CP000685) circular 6,096,872 34.1 5,219 5,099 18 60 3 39 genome Flavobacterium psychrophilum D12 plasmid pCP1 [BACTEROIDETES] (AY277637) circular 3,407 27.4 4 4 - - - - plasmid Flavobacterium psychrophilum JIP02/86 chromosome [BACTEROIDETES] (AM398681) circular 2,860,382 32.5 2,556 2,446 18 49 - 43 genome Flavobacterium sp. KP1 plasmid pFL1 [BACTEROIDETES] (AB007196) circular 2,311 32.7 2 2 - - - - plasmid Flexibacter litoralis DSM 6794 chromosome [BACTEROIDETES] (CP003345) circular 4,919,337 30.7 4,023 3,907 9 47 2 58 genome Flexistipes sinusarabici DSM 4947 chromosome [DEFERRIBACTERES] (CP002858) circular 2,526,590 38.3 2,397 2,311 6 44 2 34 genome Fluoribacter dumoffii Tex-KL plasmid pLD-TEX-KL [PROTEOBACTERIA] (AB297474) circular 66,512 38.9 57 57 - - - - plasmid Fluoribacter dumoffii Tex-KL plasmid pLDTK [PROTEOBACTERIA] (CM001372) circular 126,527 37.9 134 128 - - - 6 plasmid Fluviicola taffensis DSM 16823 chromosome [BACTEROIDETES] (CP002542) circular 4,633,577 36.5 4,069 3,991 6 40 2 30 genome Francisella cf. tularensis novicida 3523 chromosome [PROTEOBACTERIA] (CP002558) circular 1,945,310 32.3 1,870 1,798 10 38 1 23 genome Francisella cf. tularensis novicida Fx1 chromosome [PROTEOBACTERIA] (CP002557) circular 1,913,619 32.5 1,828 1,734 10 38 1 45 genome Francisella noatunensis orientalis Toba 04 chromosome [PROTEOBACTERIA] (CP003402) circular 1,847,202 32.2 1,861 1,421 4 35 1 400 genome Francisella philomiragia philomiragia ATCC 25017 chromosome [PROTEOBACTERIA] (CP000937) circular 2,045,775 32.6 1,979 1,885 10 39 1 44 genome Francisella philomiragia philomiragia ATCC 25017 plasmid pF243 [PROTEOBACTERIA] (EU850813) circular 5,072 31.9 6 6 - - - - plasmid Francisella sp. TX077308 chromosome [PROTEOBACTERIA] (CP002872) circular 2,035,931 32.9 1,971 1,884 10 39 1 37 genome Francisella tularensis holarctica FTNF002-00 chromosome [PROTEOBACTERIA] (CP000803) circular 1,890,909 32.2 1,987 1,747 10 38 2 190 genome Francisella tularensis holarctica LVS chromosome [PROTEOBACTERIA] (AM233362) circular 1,895,994 32.2 1,999 1,766 10 38 3 182 genome Francisella tularensis holarctica OSU18 chromosome [PROTEOBACTERIA] (CP000437) circular 1,895,727 32.2 1,994 1,735 10 38 1 210 genome Francisella tularensis mediasiatica FSC147 chromosome [PROTEOBACTERIA] (CP000915) circular 1,893,886 32.3 1,980 1,659 10 38 1 272 genome Francisella tularensis novicida plasmid pFNL10 [PROTEOBACTERIA] (AF121418) circular 3,990 32.2 6 6 - - - - plasmid Francisella tularensis novicida U112 chromosome [PROTEOBACTERIA] (CP000439) circular 1,910,031 32.5 1,835 1,758 10 38 1 28 genome Francisella tularensis plasmid pOM1 [PROTEOBACTERIA] (AF055345) circular 4,442 40.6 4 4 - - - - plasmid

26 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Francisella tularensis tularensis FSC198 chromosome [PROTEOBACTERIA] (AM286280) circular 1,892,616 32.3 1,963 1,794 10 38 1 120 genome Francisella tularensis tularensis NE061598 chromosome [PROTEOBACTERIA] (CP001633) circular 1,892,681 32.3 1,966 1,797 10 38 1 120 genome Francisella tularensis tularensis SCHU S4 chromosome [PROTEOBACTERIA] (AJ749949) circular 1,892,775 32.3 1,834 1,556 10 38 1 227 genome Francisella tularensis tularensis TI0902 chromosome [PROTEOBACTERIA] (CP003049) circular 1,892,744 32.3 1,967 1,799 10 38 1 119 genome Francisella tularensis tularensis TIGB03 chromosome [PROTEOBACTERIA] (CP003048) circular 1,968,651 32.3 2,066 1,895 10 39 1 121 genome Francisella tularensis tularensis WY96-3418 chromosome [PROTEOBACTERIA] (CP000608) circular 1,898,476 32.3 1,972 1,792 10 38 4 128 genome Frankia alni ACN14a chromosome [ACTINOBACTERIA] (CT573213) circular 7,497,934 72.8 6,006 5,805 6 44 11 140 genome Frankia sp. CcI3 chromosome [ACTINOBACTERIA] (CP000249) circular 5,433,628 70.1 4,596 4,327 6 45 3 215 genome Frankia sp. CpI1 plasmid pFQ12 [ACTINOBACTERIA] (AY027524) circular 22,437 75.6 20 20 - - - - plasmid Frankia sp. EAN1pec chromosome [ACTINOBACTERIA] (CP000820) circular 8,982,042 71.2 7,322 6,940 9 47 3 323 genome Frankia sp. EuI1c chromosome [ACTINOBACTERIA] (CP002299) circular 8,815,781 72.3 7,123 6,876 9 46 2 190 genome Frankia symbiont of Datisca glomerata chromosome [ACTINOBACTERIA] (CP002801) circular 5,323,186 70.0 4,464 4,099 6 45 2 312 genome Frankia symbiont of Datisca glomerata plasmid pFSYMDG01 [ACTINOBACTERIA] (CP002802) circular 12,355 67.8 9 9 - - - - genome Frateuria aurantia DSM 6220 chromosome [PROTEOBACTERIA] (CP003350) circular 3,603,458 63.4 3,250 3,112 12 74 2 50 genome Fusobacterium nucleatum nucleatum ATCC 25586 chromosome [] (AE009951) circular 2,174,500 27.2 2,062 1,983 15 47 - 17 genome Fusobacterium nucleatum plasmid pFN1 [FUSOBACTERIA] (AF159249) circular 5,887 23.3 7 7 - - - - plasmid Fusobacterium nucleatum plasmid pKH9 [FUSOBACTERIA] (AF295336) circular 4,975 29.2 5 5 - - - - plasmid Fusobacterium nucleatum plasmid pPA52 [FUSOBACTERIA] (AF022647) circular 6,281 23.1 4 4 - - - - plasmid Fusobacterium nucleatum polymorphum ATCC 10953 plasmid pFN3 [FUSOBACTERIA] (CP000710) circular 11,934 24.5 10 10 - - - - plasmid Gallibacterium anatis UMN179 chromosome [PROTEOBACTERIA] (CP002667) circular 2,687,335 39.9 2,516 2,389 19 56 1 51 genome Gallibacterium anatis UMN179 plasmid pUMN179 [PROTEOBACTERIA] (CP002668) circular 6,804 35.8 8 8 - - - - genome Gallionella capsiferriformans ES-2 chromosome [PROTEOBACTERIA] (CP002159) circular 3,162,471 52.8 2,928 2,841 9 50 2 26 genome gammaproteobacterium HdN1 chromosome [PROTEOBACTERIA] (FP929140) circular 4,587,455 53.3 3,847 3,716 9 47 1 74 genome Gardnerella vaginalis 409-05 chromosome [ACTINOBACTERIA] (CP001849) circular 1,617,545 42.0 1,315 1,246 6 45 2 16 genome Gardnerella vaginalis ATCC 14019 chromosome [ACTINOBACTERIA] (CP002104) circular 1,667,350 41.4 1,421 1,365 6 45 5 - genome Gardnerella vaginalis HMP9231 chromosome [ACTINOBACTERIA] (CP002725) circular 1,726,519 41.2 1,364 1,291 6 45 2 20 genome Gemmatimonas aurantiaca T-27 chromosome [] (AP009153) circular 4,636,964 64.3 3,998 3,892 3 48 3 52 genome Geobacillus kaustophilus HTA426 chromosome [FIRMICUTES] (BA000043) circular 3,544,776 52.1 3,512 3,301 27 87 - 97 genome Geobacillus kaustophilus HTA426 plasmid pHTA426 [FIRMICUTES] (AP006520) circular 47,890 44.2 45 43 - - - 2 genome Geobacillus sp. C56-T3 chromosome [FIRMICUTES] (CP002050) circular 3,650,813 52.5 3,609 3,373 25 88 1 122 genome Geobacillus sp. WCH70 chromosome [FIRMICUTES] (CP001638) circular 3,464,618 42.8 3,424 3,120 28 92 1 183 genome Geobacillus sp. WCH70 plasmid pWCH7001 [FIRMICUTES] (CP001639) circular 33,899 39.6 37 37 - - - - genome Geobacillus sp. WCH70 plasmid pWCH7002 [FIRMICUTES] (CP001640) circular 10,287 39.6 9 9 - - - - genome Geobacillus sp. Y4.1MC1 chromosome [FIRMICUTES] (CP002293) circular 3,840,330 44.0 3,826 3,590 27 90 1 118 genome Geobacillus sp. Y4.1MC1 plasmid pGY4MC101 [FIRMICUTES] (CP002294) circular 71,617 43.8 73 68 - - - 5 genome Geobacillus sp. Y412MC52 chromosome [FIRMICUTES] (CP002442) circular 3,628,883 52.4 3,571 3,363 25 88 1 94 genome Geobacillus sp. Y412MC52 plasmid pGYMC5201e [FIRMICUTES] (CP002443) circular 45,057 45.3 37 37 - - - - genome Geobacillus sp. Y412MC61 chromosome [FIRMICUTES] (CP001794) circular 3,622,844 52.4 3,567 3,354 25 88 1 99 genome Geobacillus sp. Y412MC61 plasmid pGYMC6101 [FIRMICUTES] (CP001795) circular 45,057 45.3 37 37 - - - - genome Geobacillus stearothermophilus plasmid pGS18 [FIRMICUTES] (AM886060) circular 62,830 40.0 65 61 - - - 4 plasmid Geobacillus thermodenitrificans NG80-2 chromosome [FIRMICUTES] (CP000557) circular 3,550,319 49.0 3,508 3,310 30 88 - 80 genome Geobacillus thermodenitrificans NG80-2 plasmid pLW1071 [FIRMICUTES] (CP000558) circular 57,693 39.7 61 55 - - - 6 genome Geobacillus thermoglucosidasius C56-YS93 chromosome [FIRMICUTES] (CP002835) circular 3,893,306 44 3,895 3,630 27 90 1 147 genome Geobacillus thermoglucosidasius C56-YS93 plasmid pGEOTH01 [FIRMICUTES] (CP002836) circular 80,849 44.0 77 67 - - - 10 genome Geobacillus thermoglucosidasius C56-YS93 plasmid pGEOTH02 [FIRMICUTES] (CP002837) circular 19,638 40.4 20 20 - - - - genome Geobacillus thermoleovorans CCB_US3_UF5 chromosome [FIRMICUTES] (CP003125) circular 3,596,620 52.3 3,564 3,371 27 88 - 78 genome Geobacter bemidjiensis Bem chromosome [PROTEOBACTERIA] (CP001124) circular 4,615,150 60.3 4,049 3,921 12 58 1 57 genome Geobacter daltonii FRC-32 chromosome [PROTEOBACTERIA] (CP001390) circular 4,304,501 53.5 3,822 3,717 6 49 2 48 genome Geobacter lovleyi SZ chromosome [PROTEOBACTERIA] (CP001089) circular 3,917,761 54.8 3,604 3,510 6 45 2 41 genome Geobacter lovleyi SZ plasmid pGLOV01 [PROTEOBACTERIA] (CP001090) circular 77,113 53.0 80 79 - - - 1 genome Geobacter metallireducens GS-15 chromosome [PROTEOBACTERIA] (CP000148) circular 3,997,420 59.5 3,589 3,490 6 49 15 29 genome Geobacter metallireducens GS-15 plasmid unnamed [PROTEOBACTERIA] (CP000149) circular 13,762 52.5 18 18 - - - - genome Geobacter sp. M18 chromosome [PROTEOBACTERIA] (CP002479) circular 5,277,406 61.2 4,508 4,368 12 59 2 67 genome Geobacter sp. M21 chromosome [PROTEOBACTERIA] (CP001661) circular 4,745,806 60.5 4,138 4,033 12 58 2 33 genome Geobacter sulfurreducens KN400 chromosome [PROTEOBACTERIA] (CP002031) circular 3,714,272 61.0 3,610 3,281 6 48 242 33 genome Geobacter sulfurreducens PCA chromosome [PROTEOBACTERIA] (AE017180) circular 3,814,128 60.9 3,711 3,430 6 49 185 41 genome Geobacter uraniireducens Rf4 chromosome [PROTEOBACTERIA] (CP000698) circular 5,136,364 54.2 4,490 4,370 6 49 3 62 genome Geodermatophilus obscurus DSM 43160 chromosome [ACTINOBACTERIA] (CP001867) circular 5,322,497 74.0 4,987 4,776 9 47 1 154 genome Glaciecola nitratireducens FR1064 chromosome [PROTEOBACTERIA] (CP003060) circular 4,134,229 42.3 3,516 3,419 12 54 1 30 genome Glaciecola sp. 4H-3-7+YE-5 chromosome [PROTEOBACTERIA] (CP002526) circular 5,052,309 44.2 4,297 4,186 15 60 2 33 genome Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01 [PROTEOBACTERIA] (CP002527) circular 341,282 42.0 324 314 - - - 10 genome Gloeobacter violaceus PCC 7421 chromosome [CYANOBACTERIA] (BA000045) circular 4,659,019 62.0 4,482 4,430 3 45 4 - genome Gluconacetobacter diazotrophicus PAl 5 chromosome [PROTEOBACTERIA] (AM889285) circular 3,944,163 66.4 3,644 3,452 12 55 1 124 genome Gluconacetobacter diazotrophicus PAl 5 chromosome [PROTEOBACTERIA] (CP001189) circular 3,887,492 66.4 3,567 3,448 12 55 2 50 genome Gluconacetobacter diazotrophicus PAl 5 plasmid pGDIA01 [PROTEOBACTERIA] (CP001190) circular 27,455 58.5 29 28 - - - 1 genome Gluconacetobacter diazotrophicus PAl 5 plasmid pGDIPal5I [PROTEOBACTERIA] (AM889287) circular 38,818 56.8 45 45 - - - - genome Gluconacetobacter diazotrophicus PAl 5 plasmid pGDIPal5II [PROTEOBACTERIA] (AM889286) circular 16,610 64.0 20 19 - - - 1 genome Gluconacetobacter xylinus NBRC 3288 chromosome [PROTEOBACTERIA] (AP012159) circular 3,136,818 60.9 2,904 2,750 15 57 3 79 genome Gluconacetobacter xylinus NBRC 3288 plasmid pGXY010 [PROTEOBACTERIA] (AP012160) circular 255,866 58.0 235 221 - - - 14 genome Gluconacetobacter xylinus NBRC 3288 plasmid pGXY020 [PROTEOBACTERIA] (AP012161) circular 76,071 56.9 82 77 - - - 5 genome Gluconacetobacter xylinus NBRC 3288 plasmid pGXY030 [PROTEOBACTERIA] (AP012162) circular 28,572 59.5 36 33 - - - 3 genome Gluconacetobacter xylinus NBRC 3288 plasmid pGXY040 [PROTEOBACTERIA] (AP012163) circular 4,776 58.8 5 5 - - - - genome Gluconacetobacter xylinus NBRC 3288 plasmid pGXY050 [PROTEOBACTERIA] (AP012164) circular 4,615 51.2 5 5 - - - - genome Gluconacetobacter xylinus NBRC 3288 plasmid pGXY060 [PROTEOBACTERIA] (AP012165) circular 4,255 57.8 5 5 - - - - genome Gluconacetobacter xylinus NBRC 3288 plasmid pGXY070 [PROTEOBACTERIA] (AP012166) circular 2,218 57.1 2 2 - - - - genome Gluconobacter oxydans 621H chromosome [PROTEOBACTERIA] (CP000009) circular 2,702,173 61.1 2,552 2,387 12 55 1 97 genome Gluconobacter oxydans 621H plasmid pGOX1 [PROTEOBACTERIA] (CP000004) circular 163,186 58.3 164 156 - - - 8 genome Gluconobacter oxydans 621H plasmid pGOX2 [PROTEOBACTERIA] (CP000005) circular 26,568 56.1 28 28 - - - - genome Gluconobacter oxydans 621H plasmid pGOX3 [PROTEOBACTERIA] (CP000006) circular 14,547 56.0 18 17 - - - 1 genome Gluconobacter oxydans 621H plasmid pGOX4 [PROTEOBACTERIA] (CP000007) circular 13,223 54.4 16 15 - - - 1 genome Gluconobacter oxydans 621H plasmid pGOX5 [PROTEOBACTERIA] (CP000008) circular 2,687 60.0 3 3 - - - - genome Gluconobacter oxydans H24 chromosome [PROTEOBACTERIA] (CP003926) circular 3,602,424 56.2 3,315 3,184 15 58 1 57 genome Gluconobacter oxydans H24 plasmid unnamed [PROTEOBACTERIA] (CP003927) circular 213,808 56.1 221 217 - - - 4 genome Gluconobacter oxydans plasmid pAG5 [PROTEOBACTERIA] (AB086443) circular 5,648 50.8 1 1 - - - - plasmid Gluconobacter oxydans plasmid pGO128 [PROTEOBACTERIA] (AJ428837) circular 4,340 51.9 3 3 - - - - plasmid Gordonia bronchialis DSM 43247 chromosome [ACTINOBACTERIA] (CP001802) circular 5,208,602 67.1 4,829 4,502 6 47 2 272 genome Gordonia bronchialis DSM 43247 plasmid pGBRO01 [ACTINOBACTERIA] (CP001803) circular 81,410 65.1 73 72 - - - 1 genome

27 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Gordonia polyisoprenivorans VH2 chromosome [ACTINOBACTERIA] (CP003119) circular 5,669,805 67.0 5,038 4,898 9 49 1 81 genome Gordonia polyisoprenivorans VH2 plasmid p174 [ACTINOBACTERIA] (CP003120) circular 174,494 65.7 162 151 - - - 11 genome Gordonia sp. KTR9 chromosome [ACTINOBACTERIA] (CP002907) circular 5,441,391 67.8 4,850 4,741 9 45 1 54 genome Gordonia sp. KTR9 plasmid pGKT1 [ACTINOBACTERIA] (CP002908) circular 89,480 65.1 97 95 - - - 2 genome Gordonia sp. KTR9 plasmid pGKT2 [ACTINOBACTERIA] (CP002112) circular 182,454 62.7 159 150 - - - 9 genome Gordonia sp. KTR9 plasmid pGKT3 [ACTINOBACTERIA] (CP002909) circular 172,385 64.7 169 163 - - - 6 genome Gordonia westfalica plasmid pKB1 [ACTINOBACTERIA] (AJ576039) circular 101,016 66.0 105 105 - - - - plasmid Gramella forsetii KT0803 chromosome [BACTEROIDETES] (CU207366) circular 3,798,465 36.6 3,429 3,348 9 44 1 27 genome Granulibacter bethesdensis CGDNIH1 chromosome [PROTEOBACTERIA] (CP000394) circular 2,708,355 59.1 2,458 2,355 9 52 1 41 genome Granulicella mallensis MP5ACTX8 chromosome [ACIDOBACTERIA] (CP003130) circular 6,237,577 57.9 4,844 4,735 3 47 2 57 genome Granulicella tundricola MP5ACTX9 chromosome [ACIDOBACTERIA] (CP002480) circular 4,309,153 60.5 3,792 3,672 3 46 2 69 genome Granulicella tundricola MP5ACTX9 plasmid pACIX901 [ACIDOBACTERIA] (CP002481) circular 475,658 59.6 310 304 - - - 6 genome Granulicella tundricola MP5ACTX9 plasmid pACIX902 [ACIDOBACTERIA] (CP002482) circular 300,292 59.4 206 204 - - - 2 genome Granulicella tundricola MP5ACTX9 plasmid pACIX903 [ACIDOBACTERIA] (CP002483) circular 188,167 55.9 176 171 - - - 5 genome Granulicella tundricola MP5ACTX9 plasmid pACIX904 [ACIDOBACTERIA] (CP002484) circular 115,493 53.3 95 89 - - - 6 genome Granulicella tundricola MP5ACTX9 plasmid pACIX905 [ACIDOBACTERIA] (CP002485) circular 115,221 56.4 108 102 - - - 6 genome Haemophilus ducreyi 35000HP chromosome [PROTEOBACTERIA] (AE017143) circular 1,698,955 38.2 1,668 1,509 19 48 1 91 genome Haemophilus influenzae 10810 chromosome [PROTEOBACTERIA] (FQ312006) linear 1,981,535 38.1 1,973 1,853 20 57 1 42 genome Haemophilus influenzae 86-028NP chromosome [PROTEOBACTERIA] (CP000057) circular 1,914,490 38.2 1,895 1,784 19 58 1 33 genome Haemophilus influenzae biotype aegyptius plasmid pF1947 [PROTEOBACTERIA] (AY647243) circular 32,628 36.8 34 34 - - - - plasmid Haemophilus influenzae biotype aegyptius plasmid pF3028 [PROTEOBACTERIA] (AF469177) circular 32,379 36.7 34 34 - - - - plasmid Haemophilus influenzae biotype aegyptius plasmid pF3031 [PROTEOBACTERIA] (AF447808) circular 32,433 36.7 33 33 - - - - plasmid Haemophilus influenzae F3031 chromosome [PROTEOBACTERIA] (FQ670178) circular 1,985,832 38.2 1,979 1,839 19 58 1 62 genome Haemophilus influenzae F3047 chromosome [PROTEOBACTERIA] (FQ670204) circular 2,007,018 38.2 2,002 1,866 19 57 1 59 genome Haemophilus influenzae PittEE chromosome [PROTEOBACTERIA] (CP000671) circular 1,813,033 38.0 1,749 1,509 19 58 2 161 genome Haemophilus influenzae PittGG chromosome [PROTEOBACTERIA] (CP000672) circular 1,887,192 38.0 1,741 1,667 31 55 12 - genome Haemophilus influenzae plasmid ICEhin1056 [PROTEOBACTERIA] (AJ627386) circular 59,393 39.1 64 62 - - - 2 plasmid Haemophilus influenzae R2846 chromosome [PROTEOBACTERIA] (CP002276) circular 1,819,370 38.0 1,771 1,652 19 57 2 41 genome Haemophilus influenzae R2866 chromosome [PROTEOBACTERIA] (CP002277) circular 1,932,306 38.1 1,897 1,797 19 59 1 21 genome Haemophilus influenzae Rd KW20 chromosome [PROTEOBACTERIA] (L42023) circular 1,830,138 38.2 1,765 1,610 19 58 4 67 genome Haemophilus parainfluenzae T3T1 chromosome [PROTEOBACTERIA] (FQ312002) circular 2,086,875 39.6 2,033 1,946 19 57 1 10 genome Haemophilus parasuis plasmid pHN61 [PROTEOBACTERIA] (FJ947048) circular 6,320 36.1 5 5 - - - - plasmid Haemophilus parasuis plasmid pHS-Rec [PROTEOBACTERIA] (AY862436) circular 9,462 32.8 7 7 - - - - plasmid Haemophilus parasuis SH0165 chromosome [PROTEOBACTERIA] (CP001321) circular 2,269,156 40.0 2,228 2,046 20 56 1 104 genome Haemophilus somnus 129PT chromosome [PROTEOBACTERIA] (CP000436) circular 2,007,700 37.2 1,847 1,748 16 49 6 28 genome Haemophilus somnus 129PT plasmid pHS129 [PROTEOBACTERIA] (CP000019) circular 5,178 35.0 6 6 - - - - genome Haemophilus somnus 2336 chromosome [PROTEOBACTERIA] (CP000947) circular 2,263,857 37.4 2,082 1,968 16 48 2 48 genome Hahella chejuensis KCTC 2396 chromosome [PROTEOBACTERIA] (CP000155) circular 7,215,267 53.9 6,376 6,222 15 67 1 71 genome Halanaerobium hydrogeniformans chromosome [FIRMICUTES] (CP002304) circular 2,613,117 33.2 2,447 2,322 12 57 2 54 genome Halanaerobium praevalens DSM 2228 chromosome [FIRMICUTES] (CP002175) circular 2,309,262 30.3 2,167 2,081 12 55 3 16 genome Haliangium ochraceum DSM 14365 chromosome [PROTEOBACTERIA] (CP001804) circular 9,446,314 69.5 6,823 6,636 6 46 1 134 genome Haliscomenobacter hydrossis DSM 1100 chromosome [BACTEROIDETES] (CP002691) circular 8,371,686 47.1 6,559 6,415 6 53 2 83 genome Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY01 [BACTEROIDETES] (CP002692) circular 164,019 46.2 113 112 - - - 1 genome Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02 [BACTEROIDETES] (CP002693) circular 143,757 46.4 104 104 - - - - genome Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY03 [BACTEROIDETES] (CP002694) circular 92,189 47.0 76 75 - - - 1 genome Halobacillus halophilus DSM 2266 chromosome [FIRMICUTES] (HE717023) circular 4,150,632 41.8 4,038 3,911 21 67 3 36 genome Halobacillus halophilus DSM 2266 plasmid PL16 [FIRMICUTES] (HE717024) circular 16,047 43.0 19 19 - - - - genome Halobacteriovorax marinus SJ chromosome [PROTEOBACTERIA] (FQ312005) linear 3,435,933 36.7 3,296 3,232 6 36 1 21 genome Halobacteriovorax marinus SJ plasmid pBMS1 [PROTEOBACTERIA] (HE610506) circular 1,973 36.2 1 1 - - - - genome Halomonas elongata DSM 2581 chromosome [PROTEOBACTERIA] (FN869568) circular 4,061,296 63.6 3,760 3,628 12 67 3 50 genome Halorhodospira halophila SL1 chromosome [PROTEOBACTERIA] (CP000544) circular 2,678,452 68.0 2,458 2,375 6 46 3 28 genome Halothermothrix orenii H 168 chromosome [FIRMICUTES] (CP001098) circular 2,578,146 37.9 2,452 2,354 11 56 2 29 genome Halothiobacillus neapolitanus c2 chromosome [PROTEOBACTERIA] (CP001801) circular 2,582,886 54.7 2,408 2,294 6 43 3 62 genome Helicobacter acinonychis Sheeba chromosome [PROTEOBACTERIA] (AM260522) circular 1,553,927 38.2 1,515 1,362 6 36 1 109 genome Helicobacter acinonychis Sheeba plasmid pHac1 [PROTEOBACTERIA] (AM260523) circular 3,661 34.6 3 3 - - - - genome Helicobacter bizzozeronii CIII-1 chromosome [PROTEOBACTERIA] (FR871757) circular 1,755,458 46.0 1,754 1,575 6 36 1 136 genome Helicobacter bizzozeronii CIII-1 plasmid phbz1 [PROTEOBACTERIA] (FR871758) circular 52,076 42.2 55 50 - - - 5 genome Helicobacter cetorum MIT 00-7128 chromosome [PROTEOBACTERIA] (CP003479) circular 1,947,646 34.5 1,781 1,689 6 38 1 47 genome Helicobacter cetorum MIT 00-7128 plasmid pHCW [PROTEOBACTERIA] (CP003480) circular 12,465 34.5 12 11 - - - 1 genome Helicobacter cetorum MIT 99-5656 chromosome [PROTEOBACTERIA] (CP003481) circular 1,833,666 35.6 1,719 1,609 6 36 1 67 genome Helicobacter cetorum MIT 99-5656 plasmid pHCD [PROTEOBACTERIA] (CP003482) circular 14,124 32.7 14 14 - - - - genome Helicobacter cinaedi PAGU611 chromosome [PROTEOBACTERIA] (AP012344) circular 2,078,348 38.6 2,100 1,937 6 39 1 117 genome Helicobacter felis ATCC 49179 chromosome [PROTEOBACTERIA] (FQ670179) circular 1,672,681 44.5 1,686 1,613 5 36 1 31 genome Helicobacter hepaticus ATCC 51449 chromosome [PROTEOBACTERIA] (AE017125) circular 1,799,146 35.9 1,814 1,742 3 36 1 32 genome Helicobacter mustelae 12198 chromosome [PROTEOBACTERIA] (FN555004) circular 1,578,097 42.5 1,512 1,452 6 37 1 16 genome Helicobacter pylori 2017 chromosome [PROTEOBACTERIA] (CP002571) circular 1,548,238 39.3 1,506 1,382 3 36 1 83 genome Helicobacter pylori 2018 chromosome [PROTEOBACTERIA] (CP002572) circular 1,562,832 39.3 1,516 1,393 3 36 1 82 genome Helicobacter pylori 26695 chromosome [PROTEOBACTERIA] (AE000511) circular 1,667,867 38.9 1,555 1,445 7 36 - 65 genome Helicobacter pylori 26695 chromosome [PROTEOBACTERIA] (CP003904) circular 1,667,892 38.9 1,632 1,538 6 36 1 50 genome Helicobacter pylori 35A chromosome [PROTEOBACTERIA] (CP002096) circular 1,566,655 38.9 1,530 1,414 6 36 2 71 genome Helicobacter pylori 51 chromosome [PROTEOBACTERIA] (CP000012) circular 1,589,954 38.8 1,545 1,433 6 36 1 68 genome Helicobacter pylori 52 chromosome [PROTEOBACTERIA] (CP001680) circular 1,568,826 38.9 1,522 1,392 6 36 1 86 genome Helicobacter pylori 83 chromosome [PROTEOBACTERIA] (CP002605) circular 1,617,426 38.7 1,562 1,441 6 36 2 76 genome Helicobacter pylori 908 chromosome [PROTEOBACTERIA] (CP002184) circular 1,549,666 39.3 1,501 1,360 3 36 1 100 genome Helicobacter pylori B38 chromosome [PROTEOBACTERIA] (FM991728) circular 1,576,758 39.2 1,545 1,432 6 36 3 67 genome Helicobacter pylori B8 chromosome [PROTEOBACTERIA] (FN598874) circular 1,673,997 38.8 1,611 1,507 6 36 1 61 genome Helicobacter pylori B8 plasmid HPB8p [PROTEOBACTERIA] (FN665651) circular 6,032 35.9 5 4 - - - 1 genome Helicobacter pylori Cuz20 chromosome [PROTEOBACTERIA] (CP002076) circular 1,635,449 38.9 1,580 1,487 6 36 1 49 genome Helicobacter pylori ELS37 chromosome [PROTEOBACTERIA] (CP002953) circular 1,664,587 38.9 1,593 1,474 6 36 1 75 genome Helicobacter pylori ELS37 plasmid pHPELS37 [PROTEOBACTERIA] (CP002954) circular 5,289 35.9 4 4 - - - - genome Helicobacter pylori F16 chromosome [PROTEOBACTERIA] (AP011940) circular 1,575,399 38.9 1,531 1,421 6 36 1 66 genome Helicobacter pylori F30 chromosome [PROTEOBACTERIA] (AP011941) circular 1,570,564 38.8 1,530 1,432 6 36 1 54 genome Helicobacter pylori F30 plasmid pHPF30 [PROTEOBACTERIA] (AP011942) circular 9,129 34.1 8 6 - - - 2 genome Helicobacter pylori F32 chromosome [PROTEOBACTERIA] (AP011943) circular 1,578,824 38.9 1,537 1,439 6 36 1 54 genome Helicobacter pylori F32 plasmid pHPF32 [PROTEOBACTERIA] (AP011944) circular 2,637 36.7 1 1 - - - - genome Helicobacter pylori F57 chromosome [PROTEOBACTERIA] (AP011945) circular 1,609,006 38.7 1,560 1,456 6 36 1 60 genome Helicobacter pylori G27 chromosome [PROTEOBACTERIA] (CP001173) circular 1,652,982 38.9 1,588 1,472 6 36 1 72 genome

28 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Helicobacter pylori G27 plasmid pHPG27 [PROTEOBACTERIA] (CP001174) circular 10,031 34.9 10 10 - - - - genome Helicobacter pylori Gambia94/24 chromosome [PROTEOBACTERIA] (CP002332) circular 1,709,911 39.1 1,627 1,538 6 36 1 45 genome Helicobacter pylori Gambia94/24 plasmid unnamed [PROTEOBACTERIA] (CP002333) circular 2,557 37.4 1 1 - - - - genome Helicobacter pylori HPAG1 chromosome [PROTEOBACTERIA] (CP000241) circular 1,596,366 39.1 1,540 1,434 6 36 1 62 genome Helicobacter pylori HPAG1 plasmid pHPAG1 [PROTEOBACTERIA] (CP000242) circular 9,370 36.4 7 6 - - - 1 genome Helicobacter pylori HUP-B14 chromosome [PROTEOBACTERIA] (CP003486) circular 1,599,280 39.1 1,542 1,437 6 36 1 61 genome Helicobacter pylori HUP-B14 plasmid pHPB14 [PROTEOBACTERIA] (CP003487) circular 8,304 36.5 6 6 - - - - genome Helicobacter pylori India7 chromosome [PROTEOBACTERIA] (CP002331) circular 1,675,918 38.9 1,602 1,487 6 36 1 72 genome Helicobacter pylori J99 chromosome [PROTEOBACTERIA] (AE001439) circular 1,643,831 39.2 1,559 1,471 6 36 1 44 genome Helicobacter pylori Lithuania75 chromosome [PROTEOBACTERIA] (CP002334) circular 1,624,644 38.9 1,567 1,434 6 36 1 89 genome Helicobacter pylori Lithuania75 plasmid unnamed [PROTEOBACTERIA] (CP002335) circular 16,029 33.7 18 16 - - - 2 genome Helicobacter pylori P12 chromosome [PROTEOBACTERIA] (CP001217) circular 1,673,813 38.8 1,612 1,475 6 36 1 93 genome Helicobacter pylori P12 plasmid pHPP12 [PROTEOBACTERIA] (CP001218) circular 10,225 35.1 11 11 - - - - genome Helicobacter pylori PeCan18 chromosome [PROTEOBACTERIA] (CP003475) circular 1,660,685 39.0 1,581 1,480 6 36 1 57 genome Helicobacter pylori PeCan4 chromosome [PROTEOBACTERIA] (CP002074) circular 1,629,557 38.9 1,565 1,467 6 36 1 55 genome Helicobacter pylori plasmid pAL202 [PROTEOBACTERIA] (AY584531) circular 12,120 34.3 15 15 - - - - plasmid Helicobacter pylori plasmid pAL226 [PROTEOBACTERIA] (DQ239897) circular 9,897 35.8 13 13 - - - - plasmid Helicobacter pylori plasmid pAL236-11 [PROTEOBACTERIA] (HM125987) circular 3,148 35.9 2 2 - - - - plasmid Helicobacter pylori plasmid pAL236-2 [PROTEOBACTERIA] (HM125988) circular 1,448 37.6 1 1 - - - - plasmid Helicobacter pylori plasmid pAL236-5 [PROTEOBACTERIA] (HM125989) circular 1,216 33.9 1 1 - - - - plasmid Helicobacter pylori plasmid pHel4 [PROTEOBACTERIA] (AF469112) circular 10,970 34.3 15 15 - - - - plasmid Helicobacter pylori plasmid pHel5 [PROTEOBACTERIA] (AF469113) circular 18,291 34.4 17 15 - - - 2 plasmid Helicobacter pylori plasmid pHP489 [PROTEOBACTERIA] (AF027303) linear 1,222 33.3 1 1 - - - - plasmid Helicobacter pylori plasmid pHP51 [PROTEOBACTERIA] (AY267368) circular 3,955 35.3 2 2 - - - - plasmid Helicobacter pylori plasmid pHP666 [PROTEOBACTERIA] (DQ198799) circular 8,108 35.6 9 9 - - - - plasmid Helicobacter pylori plasmid pHP69 [PROTEOBACTERIA] (DQ915941) circular 9,153 34.0 11 11 - - - - plasmid Helicobacter pylori plasmid pHPM180 [PROTEOBACTERIA] (U12689) circular 3,506 37.0 2 2 - - - - plasmid Helicobacter pylori plasmid pHPM186 [PROTEOBACTERIA] (AF077006) circular 12,887 35.9 5 5 - - - - plasmid Helicobacter pylori plasmid pHPM8 [PROTEOBACTERIA] (AF275307) circular 7,817 33.4 6 6 - - - - plasmid Helicobacter pylori plasmid pHPO100 [PROTEOBACTERIA] (AF056496) circular 3,520 36.2 2 2 - - - - plasmid Helicobacter pylori Puno120 chromosome [PROTEOBACTERIA] (CP002980) circular 1,624,979 38.9 1,546 1,436 6 36 1 66 genome Helicobacter pylori Puno120 plasmid pHPPN120 [PROTEOBACTERIA] (CP002981) circular 12,783 35.8 14 13 - - - 1 genome Helicobacter pylori Puno135 chromosome [PROTEOBACTERIA] (CP002982) circular 1,646,139 38.8 1,586 1,493 6 36 1 49 genome Helicobacter pylori Rif1 chromosome [PROTEOBACTERIA] (CP003905) circular 1,667,883 38.9 1,630 1,532 6 36 1 54 genome Helicobacter pylori Rif2 chromosome [PROTEOBACTERIA] (CP003906) circular 1,667,890 38.9 1,630 1,534 6 36 1 52 genome Helicobacter pylori Sat464 chromosome [PROTEOBACTERIA] (CP002071) circular 1,560,342 39.1 1,516 1,424 6 36 1 48 genome Helicobacter pylori Sat464 plasmid pHPSAT464 [PROTEOBACTERIA] (CP002072) circular 7,228 33.5 5 5 - - - - genome Helicobacter pylori Shi112 chromosome [PROTEOBACTERIA] (CP003474) circular 1,663,456 38.8 1,607 1,499 6 36 1 64 genome Helicobacter pylori Shi169 chromosome [PROTEOBACTERIA] (CP003473) circular 1,616,909 38.9 1,559 1,460 6 36 1 55 genome Helicobacter pylori Shi417 chromosome [PROTEOBACTERIA] (CP003472) circular 1,665,719 38.8 1,586 1,490 6 36 1 52 genome Helicobacter pylori Shi470 chromosome [PROTEOBACTERIA] (CP001072) circular 1,608,548 38.9 1,558 1,454 6 36 1 60 genome Helicobacter pylori SJM180 chromosome [PROTEOBACTERIA] (CP002073) circular 1,658,051 38.9 1,579 1,488 6 36 1 47 genome Helicobacter pylori SNT49 chromosome [PROTEOBACTERIA] (CP002983) circular 1,607,577 39.0 1,544 1,440 6 36 1 60 genome Helicobacter pylori SNT49 plasmid pHPSNT [PROTEOBACTERIA] (CP002984) circular 3,253 37.4 2 2 - - - - genome Helicobacter pylori SouthAfrica7 chromosome [PROTEOBACTERIA] (CP002336) circular 1,653,913 38.5 1,569 1,458 6 36 1 67 genome Helicobacter pylori SouthAfrica7 plasmid unnamed [PROTEOBACTERIA] (CP002337) circular 25,916 33.7 28 28 - - - - genome Helicobacter pylori v225d chromosome [PROTEOBACTERIA] (CP001582) circular 1,588,278 39.0 1,534 1,422 6 36 2 67 genome Helicobacter pylori v225d plasmid pHPv225d [PROTEOBACTERIA] (CP001583) circular 7,326 32.9 8 7 - - - 1 genome Helicobacter pylori XZ274 chromosome [PROTEOBACTERIA] (CP003419) circular 1,634,138 38.7 1,590 1,344 6 36 1 202 genome Helicobacter pylori XZ274 plasmid pXZ274 [PROTEOBACTERIA] (CP003420) circular 22,406 31.8 27 25 - - - 2 genome Heliobacterium modesticaldum Ice1 chromosome [FIRMICUTES] (CP000930) circular 3,075,407 57.0 2,825 2,627 30 109 1 58 genome Herbaspirillum seropedicae SmR1 chromosome [PROTEOBACTERIA] (CP002039) circular 5,513,887 63.4 4,796 4,687 9 55 1 44 genome Herminiimonas arsenicoxydans chromosome [PROTEOBACTERIA] (CU207211) circular 3,424,307 54.3 3,256 3,167 6 45 8 30 genome Herpetosiphon aurantiacus DSM 785 chromosome [CHLOROFLEXI] (CP000875) circular 6,346,587 50.7 5,059 4,976 15 51 2 15 genome Herpetosiphon aurantiacus DSM 785 plasmid pHAU01 [CHLOROFLEXI] (CP000876) circular 339,639 53.7 233 231 - - - 2 genome Herpetosiphon aurantiacus DSM 785 plasmid pHAU02 [CHLOROFLEXI] (CP000877) circular 99,204 53.1 71 71 - - - - genome Hippea maritima DSM 10411 chromosome [PROTEOBACTERIA] (CP002606) circular 1,694,430 37.5 1,782 1,699 6 48 2 27 genome Hirschia baltica ATCC 49814 chromosome [PROTEOBACTERIA] (CP001678) circular 3,455,622 45.2 3,171 3,107 6 38 2 17 genome Hirschia baltica ATCC 49814 plasmid pHbal01 [PROTEOBACTERIA] (CP001679) circular 84,492 43.5 67 66 - - - 1 genome Histophilus somni plasmid p9L [PROTEOBACTERIA] (AF546882) circular 1,338 43.6 1 1 - - - - plasmid Hydrogenobacter thermophilus TK-6 chromosome [AQUIFICAE] (AP011112) circular 1,743,135 44.0 1,924 1,866 3 44 - 11 genome Hydrogenobacter thermophilus TK-6 chromosome [AQUIFICAE] (CP002221) circular 1,742,932 44.0 1,924 1,868 3 44 1 8 genome Hydrogenobaculum sp. Y04AAS1 chromosome [AQUIFICAE] (CP001130) circular 1,559,514 34.8 1,658 1,595 6 45 1 11 genome Hyphomicrobium denitrificans ATCC 51888 chromosome [PROTEOBACTERIA] (CP002083) circular 3,638,969 60.8 3,518 3,448 3 46 2 19 genome Hyphomicrobium sp. MC1 chromosome [PROTEOBACTERIA] (FQ859181) circular 4,757,528 59.2 4,584 4,477 3 48 10 46 genome Hyphomonas neptunium ATCC 15444 chromosome [PROTEOBACTERIA] (CP000158) circular 3,705,021 61.9 3,518 3,436 3 43 2 34 genome Idiomarina loihiensis L2TR chromosome [PROTEOBACTERIA] (AE017340) circular 2,839,318 47.0 2,706 2,631 12 56 4 3 genome Ignavibacterium album JCM 16511 chromosome [CHLOROBI] (CP003418) circular 3,658,997 33.9 3,160 3,085 3 45 1 26 genome Ilyobacter polytropus DSM 2926 chromosome [FUSOBACTERIA] (CP002281) circular 2,046,464 34.5 1,953 1,870 20 45 2 16 genome Ilyobacter polytropus DSM 2926 chromosome 2/pILYOP01 [FUSOBACTERIA] (CP002282) circular 961,624 34.3 927 875 6 34 - 12 genome Ilyobacter polytropus DSM 2926 pILYOP02 [FUSOBACTERIA] (CP002283) circular 124,226 32.4 122 119 - - - 3 genome Intrasporangium calvum DSM 43043 chromosome [ACTINOBACTERIA] (CP002343) circular 4,024,382 70.7 3,670 3,529 6 48 2 85 genome Isoptericola variabilis 225 chromosome [ACTINOBACTERIA] (CP002810) circular 3,307,740 73.9 3,052 2,919 9 49 2 73 genome Isosphaera pallida ATCC 43644 chromosome [] (CP002353) circular 5,472,964 62.4 3,972 3,737 9 47 2 177 genome Isosphaera pallida ATCC 43644 plasmid pISOP01 [PLANCTOMYCETES] (CP002354) circular 56,340 67.0 33 33 - - - - genome Jannaschia sp. CCS1 chromosome [PROTEOBACTERIA] (CP000264) circular 4,317,977 62.3 4,273 4,177 3 41 3 49 genome Jannaschia sp. CCS1 plasmid1 [PROTEOBACTERIA] (CP000265) circular 86,072 57.8 71 67 - - - 4 genome Janthinobacterium sp. Marseille chromosome [PROTEOBACTERIA] (CP000269) circular 4,110,251 54.2 3,834 3,757 6 46 1 24 genome Jonesia denitrificans DSM 20603 chromosome [ACTINOBACTERIA] (CP001706) circular 2,749,646 58.4 2,560 2,430 16 55 2 57 genome Kangiella koreensis DSM 16069 chromosome [PROTEOBACTERIA] (CP001707) circular 2,852,073 43.7 2,656 2,595 6 41 3 11 genome Ketogulonicigenium vulgare WSH-001 chromosome [PROTEOBACTERIA] (CP002018) circular 2,766,400 61.7 2,733 2,596 12 53 - - genome Ketogulonicigenium vulgare WSH-001 plasmid 1 [PROTEOBACTERIA] (CP002019) circular 267,986 61.3 250 243 3 3 - - genome Ketogulonicigenium vulgare WSH-001 plasmid 2 [PROTEOBACTERIA] (CP002020) circular 242,715 62.6 215 215 - - - - genome Ketogulonicigenium vulgare Y25 chromosome [PROTEOBACTERIA] (CP002224) circular 2,776,084 61.7 2,841 2,603 12 56 1 169 genome Ketogulonicigenium vulgare Y25 plasmid pYP1 [PROTEOBACTERIA] (CP002225) circular 268,675 61.4 254 235 3 3 - 13 genome Ketogulonicigenium vulgare Y25 plasmid pYP12 [PROTEOBACTERIA] (CP002226) circular 243,645 62.6 218 196 - - - 22 genome Kineococcus radiotolerans SRS30216 chromosome [ACTINOBACTERIA] (CP000750) linear 4,761,183 74.4 4,537 4,381 12 49 4 91 genome

29 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Kineococcus radiotolerans SRS30216 plasmid pKRAD01 [ACTINOBACTERIA] (CP000751) linear 182,572 69.4 170 166 - - - 4 genome Kineococcus radiotolerans SRS30216 plasmid pKRAD02 [ACTINOBACTERIA] (CP000752) circular 12,917 72.3 17 17 - - - - genome Kitasatospora setae KM-6054 chromosome [ACTINOBACTERIA] (AP010968) linear 8,783,278 74.2 7,567 7,221 27 72 3 244 genome Klebsiella oxytoca E718 chromosome [PROTEOBACTERIA] (CP003683) circular 6,097,032 56.0 5,684 5,427 25 85 1 146 genome Klebsiella oxytoca E718 plasmid pKOX_R1 [PROTEOBACTERIA] (CP003684) circular 353,865 47.5 358 329 - - - 29 genome Klebsiella oxytoca KCTC 1686 chromosome [PROTEOBACTERIA] (CP003218) circular 5,974,109 56.0 5,487 5,315 25 85 1 61 genome Klebsiella oxytoca KOX105 plasmid pKOX105 [PROTEOBACTERIA] (HM126016) circular 54,641 51.8 70 70 - - - - plasmid Klebsiella pneumoniae 342 chromosome [PROTEOBACTERIA] (CP000964) circular 5,641,239 57.3 5,275 5,118 25 88 1 43 genome Klebsiella pneumoniae 342 plasmid pKP187 [PROTEOBACTERIA] (CP000965) circular 187,922 47.2 182 162 - - - 20 genome Klebsiella pneumoniae 342 plasmid pKP91 [PROTEOBACTERIA] (CP000966) circular 91,096 51.1 97 89 - - - 8 genome Klebsiella pneumoniae CG43 plasmid pLVPK [PROTEOBACTERIA] (AY378100) circular 219,385 50.3 260 251 - - - 8 plasmid Klebsiella pneumoniae KCTC 2242 chromosome [PROTEOBACTERIA] (CP002910) circular 5,259,571 57.6 5,207 5,026 25 88 1 67 genome Klebsiella pneumoniae KCTC 2242 plasmid pKCTC2242 [PROTEOBACTERIA] (CP002911) circular 202,852 50.2 206 192 - - - 14 genome Klebsiella pneumoniae plasmid 12 [PROTEOBACTERIA] (FJ223605) circular 75,617 52.8 92 92 - - - - plasmid Klebsiella pneumoniae plasmid 15S [PROTEOBACTERIA] (FJ223606) circular 23,753 57.0 24 24 - - - - plasmid Klebsiella pneumoniae plasmid 9 [PROTEOBACTERIA] (FJ223607) circular 70,655 54.3 87 87 - - - - plasmid Klebsiella pneumoniae plasmid ColEST258 [PROTEOBACTERIA] (JN247853) circular 13,636 53.7 12 12 - - - - plasmid Klebsiella pneumoniae plasmid pAAC154 [PROTEOBACTERIA] (JF828150) circular 15,101 53.5 18 16 - - - - plasmid Klebsiella pneumoniae plasmid pc15-k [PROTEOBACTERIA] (HQ202266) circular 95,626 52.1 80 80 - - - - plasmid Klebsiella pneumoniae plasmid pCTXM360 [PROTEOBACTERIA] (EU938349) circular 68,018 51.4 79 75 - - - 4 plasmid Klebsiella pneumoniae plasmid pIGMS32 [PROTEOBACTERIA] (DQ298019) circular 9,294 55.2 7 7 - - - - plasmid Klebsiella pneumoniae plasmid pIMP-HZ1 [PROTEOBACTERIA] (JX457479) circular 50,775 50.5 76 76 - - - - plasmid Klebsiella pneumoniae plasmid pIncX-SHV [PROTEOBACTERIA] (JN247852) circular 43,380 46.8 41 41 - - - - plasmid Klebsiella pneumoniae plasmid pIP843 [PROTEOBACTERIA] (AY033516) circular 7,086 47.1 5 5 - - - - plasmid Klebsiella pneumoniae plasmid pJHCMW1 [PROTEOBACTERIA] (AF479774) circular 11,354 49.0 8 8 - - - - plasmid Klebsiella pneumoniae plasmid pK245 [PROTEOBACTERIA] (DQ449578) circular 98,264 51.8 90 90 - - - - plasmid Klebsiella pneumoniae plasmid pK29 [PROTEOBACTERIA] (EF382672) circular 269,674 46.1 310 310 - - - - plasmid Klebsiella pneumoniae plasmid pKDO1 [PROTEOBACTERIA] (JX424423) circular 127,508 52.8 124 124 - - - - plasmid Klebsiella pneumoniae plasmid pKF3-140 [PROTEOBACTERIA] (FJ876827) circular 147,416 52.5 196 196 - - - - plasmid Klebsiella pneumoniae plasmid pKF3-70 [PROTEOBACTERIA] (FJ494913) circular 70,057 52.3 95 95 - - - - plasmid Klebsiella pneumoniae plasmid pKF3-94 [PROTEOBACTERIA] (FJ876826) circular 94,219 51.6 115 115 - - - - plasmid Klebsiella pneumoniae plasmid pKlebB-k17/80 [PROTEOBACTERIA] (AF156893) circular 5,258 49.3 7 5 - - 2 - plasmid Klebsiella pneumoniae plasmid pKP048 [PROTEOBACTERIA] (FJ628167) circular 151,188 51.3 156 156 - - - - plasmid Klebsiella pneumoniae plasmid pKP3-A [PROTEOBACTERIA] (JN205800) linear 7,605 48.6 7 7 - - - - plasmid Klebsiella pneumoniae plasmid pKP96 [PROTEOBACTERIA] (EU195449) circular 67,850 52.6 72 64 - - - 1 plasmid Klebsiella pneumoniae plasmid pKPC-NY79 [PROTEOBACTERIA] (JX104759) circular 42,447 48.5 38 38 - - - - plasmid Klebsiella pneumoniae plasmid pKPN_CZ [PROTEOBACTERIA] (JX424424) circular 207,819 53.4 171 168 - - - 3 plasmid Klebsiella pneumoniae plasmid pKPN101-IT [PROTEOBACTERIA] (JX283456) circular 107,748 52.7 116 116 - - - - plasmid Klebsiella pneumoniae plasmid pKpn114 [PROTEOBACTERIA] (EU932690) circular 4,211 41.7 9 5 - - 2 2 plasmid Klebsiella pneumoniae plasmid pKpQIL [PROTEOBACTERIA] (GU595196) circular 113,637 53.9 121 121 - - - - plasmid Klebsiella pneumoniae plasmid pKpQIL-IT [PROTEOBACTERIA] (JN233705) circular 115,300 53.9 108 108 - - - - plasmid Klebsiella pneumoniae plasmid pKpS90 [PROTEOBACTERIA] (JX461340) circular 53,286 49.6 53 51 - - - - plasmid Klebsiella pneumoniae plasmid pMET-1 [PROTEOBACTERIA] (EU383016) circular 41,723 48.3 41 41 - - - - plasmid Klebsiella pneumoniae plasmid pNDM-HN380 [PROTEOBACTERIA] (JX104760) circular 54,035 49.0 54 52 - - - 2 plasmid Klebsiella pneumoniae plasmid pNDM-KN [PROTEOBACTERIA] (JN157804) circular 162,746 51.8 137 137 - - - - plasmid Klebsiella pneumoniae plasmid pNDM-MAR [PROTEOBACTERIA] (JN420336) circular 267,242 46.7 185 180 - - - - plasmid Klebsiella pneumoniae plasmid pNDM10469 [PROTEOBACTERIA] (JN861072) circular 137,813 52.0 167 165 - - - - plasmid Klebsiella pneumoniae plasmid pNL194 [PROTEOBACTERIA] (GU585907) circular 79,307 53.1 91 83 - - - - plasmid Klebsiella pneumoniae plasmid pOXA-48 [PROTEOBACTERIA] (JN626286) circular 61,881 51.1 74 72 - - - - plasmid Klebsiella pneumoniae plasmid pR55 [PROTEOBACTERIA] (JQ010984) circular 170,810 53.0 204 202 - - - 2 plasmid Klebsiella pneumoniae plasmid pRYCKPC3.1 [PROTEOBACTERIA] (GU386376) circular 9,803 61.7 6 6 - - - - plasmid Klebsiella pneumoniae plasmid pSLMT [PROTEOBACTERIA] (HQ589350) circular 21,138 56.3 14 14 - - - - plasmid Klebsiella pneumoniae plasmid pTR4 [PROTEOBACTERIA] (JQ349085) circular 41,187 50.8 53 52 - - - - plasmid Klebsiella pneumoniae plasmid pUUH239.2 [PROTEOBACTERIA] (CP002474) circular 220,824 52.8 222 219 - - - 2 plasmid Klebsiella pneumoniae pneumoniae 1084 chromosome [PROTEOBACTERIA] (CP003785) circular 5,386,705 57.4 5,215 4,995 25 80 1 114 genome Klebsiella pneumoniae pneumoniae HS11286 chromosome [PROTEOBACTERIA] (CP003200) circular 5,333,942 57.5 5,404 5,316 25 62 1 - genome Klebsiella pneumoniae pneumoniae HS11286 plasmid pKPHS1 [PROTEOBACTERIA] (CP003223) circular 122,799 49.5 141 141 - - - - genome Klebsiella pneumoniae pneumoniae HS11286 plasmid pKPHS2 [PROTEOBACTERIA] (CP003224) circular 111,195 53.3 160 160 - - - - genome Klebsiella pneumoniae pneumoniae HS11286 plasmid pKPHS3 [PROTEOBACTERIA] (CP003225) circular 105,974 52.5 152 152 - - - - genome Klebsiella pneumoniae pneumoniae HS11286 plasmid pKPHS4 [PROTEOBACTERIA] (CP003226) circular 3,751 52.2 4 4 - - - - genome Klebsiella pneumoniae pneumoniae HS11286 plasmid pKPHS5 [PROTEOBACTERIA] (CP003227) circular 3,353 42.8 5 5 - - - - genome Klebsiella pneumoniae pneumoniae HS11286 plasmid pKPHS6 [PROTEOBACTERIA] (CP003228) circular 1,308 47.9 1 1 - - - - genome Klebsiella pneumoniae pneumoniae MGH 78578 chromosome [PROTEOBACTERIA] (CP000647) circular 5,315,120 57.5 5,228 5,047 25 86 1 69 genome Klebsiella pneumoniae pneumoniae MGH 78578 plasmid pKPN3 [PROTEOBACTERIA] (CP000648) circular 175,879 51.7 187 179 - - - 8 genome Klebsiella pneumoniae pneumoniae MGH 78578 plasmid pKPN4 [PROTEOBACTERIA] (CP000649) circular 107,576 53.4 123 118 - - - 5 genome Klebsiella pneumoniae pneumoniae MGH 78578 plasmid pKPN5 [PROTEOBACTERIA] (CP000650) circular 88,582 53.8 105 100 - - - 5 genome Klebsiella pneumoniae pneumoniae MGH 78578 plasmid pKPN6 [PROTEOBACTERIA] (CP000651) circular 4,259 41.4 4 4 - - - - genome Klebsiella pneumoniae pneumoniae MGH 78578 plasmid pKPN7 [PROTEOBACTERIA] (CP000652) circular 3,478 45.7 5 5 - - - - genome Klebsiella pneumoniae pneumoniae NTUH-K2044 chromosome [PROTEOBACTERIA] (AP006725) circular 5,248,520 57.7 5,144 4,973 25 86 12 48 genome Klebsiella pneumoniae pneumoniae NTUH-K2044 plasmid pK2044 [PROTEOBACTERIA] (AP006726) circular 224,152 50.2 226 209 - - - 17 genome Klebsiella sp. KCL-2 plasmid pMGD2 [PROTEOBACTERIA] (AY033498) circular 3,564 47.7 2 2 - - - - plasmid Klebsiella variicola At-22 chromosome [PROTEOBACTERIA] (CP001891) circular 5,458,505 57.6 5,113 4,979 25 85 2 22 genome Kocuria rhizophila DC2201 chromosome [ACTINOBACTERIA] (AP009152) circular 2,697,540 71.2 2,336 2,231 9 46 2 48 genome Kosmotoga olearia TBF 19.5.1 chromosome [THERMOTOGAE] (CP001634) circular 2,302,126 41.5 2,197 2,127 6 46 2 16 genome Kribbella flavida DSM 17836 chromosome [ACTINOBACTERIA] (CP001736) circular 7,579,488 70.6 7,038 6,876 6 51 2 103 genome Krokinobacter sp. 4H-3-7-5 chromosome [BACTEROIDETES] (CP002528) circular 3,389,993 37.3 3,001 2,932 9 42 2 16 genome Kyrpidia tusciae DSM 2912 chromosome [FIRMICUTES] (CP002017) circular 3,384,766 59.1 3,308 3,148 15 59 2 84 genome Kytococcus sedentarius DSM 20547 chromosome [ACTINOBACTERIA] (CP001686) circular 2,785,024 71.6 2,623 2,463 6 47 2 105 genome Lachnoclostridium phytofermentans ISDg chromosome [FIRMICUTES] (CP000885) circular 4,847,594 35.3 4,077 3,925 24 60 2 66 genome Lacinutrix sp. 5H-3-7-4 chromosome [BACTEROIDETES] (CP002825) circular 3,296,168 30.8 2,974 2,914 6 36 2 16 genome Lactobacillus acidophilus 30SC chromosome [FIRMICUTES] (CP002559) circular 2,078,001 38.1 2,084 1,903 12 62 - 107 genome Lactobacillus acidophilus 30SC plasmid pRKC30SC1 [FIRMICUTES] (CP002560) circular 7,197 35.1 6 5 - - - 1 genome Lactobacillus acidophilus 30SC plasmid pRKC30SC2 [FIRMICUTES] (CP002561) circular 12,568 36.6 15 15 - - - - genome Lactobacillus acidophilus NCFM chromosome [FIRMICUTES] (CP000033) circular 1,993,560 34.7 1,927 1,832 13 61 - 21 genome Lactobacillus acidophilus plasmid pLA103 [FIRMICUTES] (AB081463) circular 13,913 40.4 15 15 - - - - plasmid Lactobacillus acidophilus plasmid pLA106 [FIRMICUTES] (D88438) circular 2,862 43.3 3 3 - - - - plasmid Lactobacillus amylovorus GRL 1112 chromosome [FIRMICUTES] (CP002338) circular 2,067,702 38.2 2,080 1,909 12 60 - 99 genome

30 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Lactobacillus amylovorus GRL 1112 plasmid1e [FIRMICUTES] (CP002612) circular 33,688 31.8 33 29 - - - 4 genome Lactobacillus amylovorus GRL 1112 plasmid2e [FIRMICUTES] (CP002613) circular 25,284 36.3 27 26 - - - 1 genome Lactobacillus amylovorus GRL1118 chromosome [FIRMICUTES] (CP002609) circular 1,894,401 38.1 1,902 1,752 12 62 - 76 genome Lactobacillus amylovorus GRL1118 plasmid2 [FIRMICUTES] (CP002611) circular 78,145 35.5 68 58 - - - 10 genome Lactobacillus brevis ATCC 367 chromosome [FIRMICUTES] (CP000416) circular 2,291,220 46.2 2,256 2,134 15 63 - 43 genome Lactobacillus brevis ATCC 367 plasmid 1 [FIRMICUTES] (CP000417) circular 13,413 38.6 15 13 - - - 2 genome Lactobacillus brevis ATCC 367 plasmid 2 [FIRMICUTES] (CP000418) circular 35,595 38.5 34 27 - - - 7 genome Lactobacillus brevis plasmid pLB925A03 [FIRMICUTES] (AB370336) circular 8,881 42.1 7 7 - - - - plasmid Lactobacillus brevis plasmid pLB925A04 [FIRMICUTES] (AB370337) circular 65,037 40.8 48 48 - - - - plasmid Lactobacillus buchneri CD034 chromosome [FIRMICUTES] (CP003043) circular 2,500,564 44.4 2,393 2,288 15 61 - 29 genome Lactobacillus buchneri CD034 plasmid pCD034-2 [FIRMICUTES] (JN084214) circular 2,707 38.6 4 4 - - - - genome Lactobacillus buchneri CD034 plasmid pCD034-3 [FIRMICUTES] (CP003044) circular 56,473 37.7 59 52 - - - 7 genome Lactobacillus buchneri NRRL B-30929 chromosome [FIRMICUTES] (CP002652) circular 2,506,301 44.4 2,428 2,298 15 63 1 51 genome Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01 [FIRMICUTES] (CP002653) circular 52,697 38.1 59 52 - - - 7 genome Lactobacillus buchneri NRRL B-30929 plasmid pLBUC02 [FIRMICUTES] (CP002654) circular 18,513 40.4 22 21 - - - 1 genome Lactobacillus buchneri NRRL B-30929 plasmid pLBUC03 [FIRMICUTES] (CP002655) circular 10,798 37.6 17 17 - - - - genome Lactobacillus casei BD-II chromosome [FIRMICUTES] (CP002618) circular 3,069,926 46.3 3,043 2,932 15 60 - 36 genome Lactobacillus casei BD-II plasmid pBD-II [FIRMICUTES] (CP002619) circular 57,362 43.7 65 64 - - - 1 genome Lactobacillus casei BL23 chromosome [FIRMICUTES] (FM177140) circular 3,079,196 46.3 3,053 2,951 15 60 - 27 genome Lactobacillus casei LC2W chromosome [FIRMICUTES] (CP002616) circular 3,039,042 46.4 2,997 2,892 15 59 - 31 genome Lactobacillus casei LC2W plasmid pLC2W [FIRMICUTES] (CP002617) circular 38,392 42.6 43 42 - - - 1 genome Lactobacillus casei plasmid pRCEID13.9 [FIRMICUTES] (HQ259052) circular 13,908 40.4 13 13 - - - - plasmid Lactobacillus casei plasmid pRCEID2.9 [FIRMICUTES] (HQ173810) circular 2,952 43.2 3 3 - - - - plasmid Lactobacillus casei plasmid pRCEID3.2 [FIRMICUTES] (HQ259051) circular 3,250 44.2 5 5 - - - - plasmid Lactobacillus casei plasmid pRCEID7.6 [FIRMICUTES] (JN793951) circular 7,604 40.4 9 9 - - - - plasmid Lactobacillus casei plasmid pYIT356 [FIRMICUTES] (AB119526) circular 4,935 43.4 1 1 - - - - plasmid Lactobacillus casei W56 chromosome [FIRMICUTES] (HE970764) circular 3,075,780 46.3 3,062 2,884 15 60 - 103 genome Lactobacillus casei Zhang chromosome [FIRMICUTES] (CP001084) circular 2,861,969 46.5 2,714 2,608 15 60 - 31 genome Lactobacillus casei Zhang plasmid plca36 [FIRMICUTES] (CP000935) circular 36,487 40.1 42 42 - - - - genome Lactobacillus crispatus ST1 chromosome [FIRMICUTES] (FN692037) circular 2,043,161 36.9 2,011 1,840 12 64 - 95 genome Lactobacillus curvatus plasmid pRC18 [FIRMICUTES] (AF200347) circular 18,664 34.3 25 25 - - - - plasmid Lactobacillus delbrueckii bulgaricus 2038 chromosome [FIRMICUTES] (CP000156) circular 1,872,918 49.7 1,932 1,636 27 89 - 180 genome Lactobacillus delbrueckii bulgaricus ATCC 11842 chromosome [FIRMICUTES] (CR954253) circular 1,864,998 49.7 1,931 1,638 27 95 - 171 genome Lactobacillus delbrueckii bulgaricus ATCC BAA-365 chromosome [FIRMICUTES] (CP000412) circular 1,856,951 49.7 1,926 1,628 27 98 - 173 genome Lactobacillus delbrueckii bulgaricus ND02 chromosome [FIRMICUTES] (CP002341) circular 2,125,753 49.6 2,108 1,864 27 98 - 119 genome Lactobacillus delbrueckii bulgaricus ND02 plasmid unnamed [FIRMICUTES] (CP002342) circular 6,223 44.7 6 6 - - - - genome Lactobacillus delbrueckii bulgaricus plasmid pDOJ1 [FIRMICUTES] (EF196093) circular 6,220 44.6 6 6 - - - - plasmid Lactobacillus delbrueckii bulgaricus plasmid pLBB1 [FIRMICUTES] (AF236060) linear 6,127 44.9 4 4 - - - - plasmid Lactobacillus delbrueckii plasmid pWS58 [FIRMICUTES] (Z50864) linear 7,921 45.1 5 5 - - - - plasmid Lactobacillus fermentum CECT 5716 chromosome [FIRMICUTES] (CP002033) circular 2,100,449 51.5 2,097 1,647 15 57 - 378 genome Lactobacillus fermentum IFO 3956 chromosome [FIRMICUTES] (AP008937) circular 2,098,685 51.5 2,099 1,919 15 57 - 108 genome Lactobacillus fermentum plasmid pKC5b [FIRMICUTES] (AF378372) circular 4,392 33.5 4 4 - - - - plasmid Lactobacillus fermentum plasmid pLME300 [FIRMICUTES] (AJ488494) circular 19,389 36.5 18 18 - - - - plasmid Lactobacillus gasseri ATCC 33323 chromosome [FIRMICUTES] (CP000413) circular 1,894,360 35.3 1,865 1,744 18 75 - 28 genome Lactobacillus gasseri plasmid pLgLA39 [FIRMICUTES] (AB436615) circular 33,333 39.5 44 42 - - - 2 plasmid Lactobacillus helveticus DPC 4571 chromosome [FIRMICUTES] (CP000517) circular 2,080,931 37.1 2,095 1,776 12 61 - 246 genome Lactobacillus helveticus DSM 20075 plasmid pLH1 [FIRMICUTES] (AJ222725) circular 19,360 36.6 13 13 - - - - plasmid Lactobacillus helveticus H10 chromosome [FIRMICUTES] (CP002429) circular 2,145,899 36.8 2,165 1,879 12 63 - 211 genome Lactobacillus helveticus H10 plasmid pH10 [FIRMICUTES] (CP002430) circular 26,484 36.8 28 26 - - - 2 genome Lactobacillus helveticus jugurti plasmid pLJ1 [FIRMICUTES] (J04240) circular 3,292 35.3 1 1 - - - - plasmid Lactobacillus helveticus R0052 chromosome [FIRMICUTES] (CP003799) circular 2,129,206 36.8 2,162 1,806 12 61 - 283 genome Lactobacillus helveticus R0052 plasmid pIR52-1 [FIRMICUTES] (FJ851149) circular 6,414 34.5 8 8 - - - - plasmid Lactobacillus johnsonii DPC 6026 chromosome [FIRMICUTES] (CP002464) circular 1,966,342 34.8 1,881 1,781 12 55 - 33 genome Lactobacillus johnsonii FI9785 chromosome [FIRMICUTES] (FN298497) circular 1,755,993 34.5 1,713 1,547 12 53 2 99 genome Lactobacillus johnsonii FI9785 plasmid p9785L [FIRMICUTES] (FN357112) circular 25,652 30.4 25 24 - - - 1 genome Lactobacillus johnsonii FI9785 plasmid p9785S [FIRMICUTES] (AY862141) circular 3,471 35.8 2 2 - - - - genome Lactobacillus johnsonii NCC 533 chromosome [FIRMICUTES] (AE017198) circular 1,992,676 34.6 1,900 1,751 18 78 - 53 genome Lactobacillus kefiranofaciens ZW3 chromosome [FIRMICUTES] (CP002764) circular 2,113,023 37.7 2,067 1,787 12 60 - 208 genome Lactobacillus kefiranofaciens ZW3 plasmid pWW1 [FIRMICUTES] (CP002765) circular 194,769 34.0 189 175 - 1 - 13 genome Lactobacillus kefiranofaciens ZW3 plasmid pWW2 [FIRMICUTES] (CP002766) circular 46,296 36.0 50 46 - - - 4 genome Lactobacillus paracasei ATCC 334 chromosome [FIRMICUTES] (CP000423) circular 2,895,264 46.6 2,902 2,744 16 59 1 82 genome Lactobacillus paracasei ATCC 334 plasmid1 [FIRMICUTES] (CP000424) circular 29,061 42.2 20 20 - - - - genome Lactobacillus paracasei paracasei plasmid pCD01 [FIRMICUTES] (AY662330) circular 19,882 39.5 23 23 - - - - plasmid Lactobacillus paracasei paracasei plasmid pCD02 [FIRMICUTES] (AY662331) circular 8,554 39.5 9 9 - - - - plasmid Lactobacillus paracasei paracasei plasmid pSJ2-8 [FIRMICUTES] (FM246455) circular 14,442 42.2 15 15 - - - - plasmid Lactobacillus paracasei plasmid pMA3 [FIRMICUTES] (EU255257) circular 5,089 39.5 4 4 - - - - plasmid Lactobacillus plantarum JDM1 chromosome [FIRMICUTES] (CP001617) circular 3,197,759 44.7 2,961 2,815 16 61 - 68 genome Lactobacillus plantarum plantarum ST-III chromosome [FIRMICUTES] (CP002222) circular 3,254,376 44.6 3,020 2,897 15 64 - 43 genome Lactobacillus plantarum plantarum ST-III plasmid pST-III [FIRMICUTES] (CP002223) circular 53,560 38.7 47 45 - - - 2 genome Lactobacillus plantarum plasmid p256 [FIRMICUTES] (AJ628941) circular 7,222 36.7 10 10 - - - - plasmid Lactobacillus plantarum plasmid pA1 [FIRMICUTES] (Z11717) linear 2,820 35.0 2 2 - - - - plasmid Lactobacillus plantarum plasmid pLFE1 [FIRMICUTES] (FJ374272) circular 4,031 34.4 5 5 - - - - plasmid Lactobacillus plantarum plasmid pLP9000 [FIRMICUTES] (AY096005) circular 9,253 37.4 9 9 - - - - plasmid Lactobacillus plantarum plasmid pLTK13 [FIRMICUTES] (AB450918) circular 34,522 39.0 25 25 - - - - plasmid Lactobacillus plantarum plasmid pMD5057 [FIRMICUTES] (AF440277) circular 10,877 36.2 10 9 - - - 1 plasmid Lactobacillus plantarum plasmid pPB1 [FIRMICUTES] (AJ716330) circular 2,899 37.7 5 4 - - 1 - plasmid Lactobacillus plantarum plasmid pTXW [FIRMICUTES] (GU380289) circular 3,178 42.9 4 4 - - - - plasmid Lactobacillus plantarum plasmid pXY3 [FIRMICUTES] (GU363552) circular 2,968 38.2 7 7 - - - - plasmid Lactobacillus plantarum WCFS1 chromosome [FIRMICUTES] (AL935263) circular 3,308,273 44.5 3,124 3,013 15 70 3 23 genome Lactobacillus plantarum WCFS1 plasmid pWCFS103 [FIRMICUTES] (CR377166) circular 36,069 40.8 43 43 - - - - genome Lactobacillus reuteri DSM 20016 chromosome [FIRMICUTES] (CP000705) circular 1,999,618 38.9 2,018 1,900 18 68 1 31 genome Lactobacillus reuteri JCM 1112 chromosome [FIRMICUTES] (AP007281) circular 2,039,414 38.9 2,048 1,926 18 65 - 39 genome Lactobacillus reuteri plasmid pAE78 [FIRMICUTES] (AF205068) circular 4,523 33.8 4 4 - - - - plasmid Lactobacillus reuteri plasmid pK50-2 [FIRMICUTES] (HQ015473) circular 1,866 35.4 2 2 - - - - plasmid Lactobacillus reuteri plasmid pLR581 [FIRMICUTES] (EU583804) circular 12,160 40.0 14 14 - - - - plasmid Lactobacillus reuteri plasmid pLR585 [FIRMICUTES] (EU596446) circular 14,173 41.1 14 14 - - - - plasmid Lactobacillus reuteri plasmid pTE44 [FIRMICUTES] (AY082384) circular 4,523 33.8 5 5 - - - - plasmid

31 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Lactobacillus reuteri SD2112 chromosome [FIRMICUTES] (CP002844) circular 2,264,399 39.0 2,262 2,065 18 69 28 82 genome Lactobacillus reuteri SD2112 plasmid pLR581 [FIRMICUTES] (CP002845) circular 12,160 40.0 15 15 - - - - genome Lactobacillus reuteri SD2112 plasmid pLR584 [FIRMICUTES] (CP002847) circular 19,059 36.9 17 16 - - 1 - genome Lactobacillus reuteri SD2112 plasmid pLR585 [FIRMICUTES] (CP002846) circular 14,173 41.1 14 14 - - - - genome Lactobacillus rhamnosus ATCC 8530 chromosome [FIRMICUTES] (CP003094) circular 2,960,339 46.8 2,738 2,628 15 60 - 35 genome Lactobacillus rhamnosus GG (ATCC 53103) chromosome [FIRMICUTES] (AP011548) circular 3,005,051 46.7 2,817 2,703 15 57 - 42 genome Lactobacillus rhamnosus GG (ATCC 53103) chromosome [FIRMICUTES] (FM179322) circular 3,010,111 46.7 2,817 2,703 15 57 - 42 genome Lactobacillus rhamnosus HN001 plasmid pLR001 [FIRMICUTES] (CP001155) linear 8,754 41.9 11 9 - - - 2 plasmid Lactobacillus rhamnosus HN001 plasmid pLR002 [FIRMICUTES] (CP001156) linear 31,548 42.5 37 36 - - - 1 plasmid Lactobacillus rhamnosus Lc 705 chromosome [FIRMICUTES] (FM179323) circular 2,968,598 46.7 2,760 2,598 15 60 - 87 genome Lactobacillus rhamnosus Lc 705 plasmid pLC1 [FIRMICUTES] (FM179324) circular 64,508 43.5 61 53 - - - 8 genome Lactobacillus ruminis ATCC 27782 chromosome [FIRMICUTES] (CP003032) circular 2,066,652 43.5 2,035 1,836 19 67 - 113 genome Lactobacillus sakei plasmid pRV500 [FIRMICUTES] (AF438419) circular 12,959 38.1 13 13 - - - - plasmid Lactobacillus sakei sakei 23K chromosome [FIRMICUTES] (CR936503) circular 1,884,661 41.3 1,889 1,769 21 63 - 36 genome Lactobacillus salivarius CECT 5713 chromosome [FIRMICUTES] (CP002034) circular 1,828,169 32.9 1,859 1,637 21 77 - 124 genome Lactobacillus salivarius CECT 5713 plasmid pHN1 [FIRMICUTES] (CP002035) circular 44,581 39.6 51 39 - - - 12 genome Lactobacillus salivarius CECT 5713 plasmid pHN2 [FIRMICUTES] (CP002036) circular 20,426 39.0 28 24 - - - 4 genome Lactobacillus salivarius CECT 5713 plasmid pHN3 [FIRMICUTES] (CP002037) circular 242,962 32.1 243 219 - - - 24 genome Lactobacillus salivarius UCC118 chromosome [FIRMICUTES] (CP000233) circular 1,827,111 32.0 1,864 1,717 21 78 - 49 genome Lactobacillus salivarius UCC118 plasmid pMP118 [FIRMICUTES] (CP000234) circular 242,436 32.1 242 222 - - - 20 genome Lactobacillus salivarius UCC118 plasmid pSF118-20 [FIRMICUTES] (AF488831) circular 20,417 39.1 27 27 - - - - genome Lactobacillus salivarius UCC118 plasmid pSF118-44 [FIRMICUTES] (AF488832) circular 44,013 39.6 49 47 - - - 2 genome Lactobacillus sanfranciscensis TMW 1.1304 chromosome [FIRMICUTES] (CP002461) circular 1,298,316 34.7 1,364 1,234 21 61 - 48 genome Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1 [FIRMICUTES] (CP002462) circular 58,739 37.6 54 49 - - - 5 genome Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS2 [FIRMICUTES] (CP002463) circular 18,715 36.1 16 15 - - - 1 genome Lactococcus garvieae ATCC 49156 chromosome [FIRMICUTES] (AP009332) circular 1,950,135 38.8 1,983 1,885 16 62 - 19 genome Lactococcus garvieae Lg2 chromosome [FIRMICUTES] (AP009333) circular 1,963,964 38.8 1,998 1,895 16 62 - 24 genome Lactococcus garvieae plasmid pGL1 [FIRMICUTES] (HE650695) circular 4,536 37.4 6 6 - - - - plasmid Lactococcus garvieae plasmid pGL3 [FIRMICUTES] (HE650697) circular 12,948 36.3 9 8 - - - 1 plasmid Lactococcus garvieae plasmid pGL4 [FIRMICUTES] (HE651325) circular 14,006 32.2 14 13 - - - 1 plasmid Lactococcus garvieae plasmid pGL5 [FIRMICUTES] (HE651326) circular 68,798 34.3 56 56 - - - - plasmid Lactococcus garvieae plasmid pKL0018 [FIRMICUTES] (AB290882) circular 20,034 32.7 20 20 - - - - plasmid Lactococcus lactis cremoris A76 chromosome [FIRMICUTES] (CP003132) circular 2,452,616 35.9 2,550 2,268 19 62 - 201 genome Lactococcus lactis cremoris A76 plasmid pQA518 [FIRMICUTES] (CP003135) circular 17,661 37.4 14 13 - - - 1 genome Lactococcus lactis cremoris A76 plasmid pQA549 [FIRMICUTES] (CP003134) circular 49,219 35.1 49 44 - - - 5 genome Lactococcus lactis cremoris A76 plasmid pQA554 [FIRMICUTES] (CP003133) circular 53,630 34.9 63 54 - 1 - 8 genome Lactococcus lactis cremoris MG1363 chromosome [FIRMICUTES] (AM406671) circular 2,529,478 35.7 2,583 2,400 19 64 - 100 genome Lactococcus lactis cremoris NZ9000 chromosome [FIRMICUTES] (CP002094) circular 2,530,294 35.7 2,583 2,404 19 64 - 96 genome Lactococcus lactis cremoris plasmid pAG6 [FIRMICUTES] (AB198069) circular 8,663 33.7 8 8 - - - - plasmid Lactococcus lactis cremoris plasmid pBM02 [FIRMICUTES] (AY026767) circular 3,854 35.7 6 6 - - - - plasmid Lactococcus lactis cremoris plasmid pHP003 [FIRMICUTES] (AF247159) circular 13,433 40.1 6 6 - - - - plasmid Lactococcus lactis cremoris plasmid pNZ4000 [FIRMICUTES] (AF036485) circular 42,810 33.3 45 45 - - - - plasmid Lactococcus lactis cremoris plasmid pWVO2 [FIRMICUTES] (Z22704) linear 3,826 31.3 1 1 - - - - plasmid Lactococcus lactis cremoris SK11 chromosome [FIRMICUTES] (CP000425) circular 2,438,589 35.9 2,523 2,268 19 61 - 175 genome Lactococcus lactis cremoris SK11 plasmid1 [FIRMICUTES] (CP000426) circular 14,041 34.4 14 13 - - - 1 genome Lactococcus lactis cremoris SK11 plasmid2 [FIRMICUTES] (CP000427) circular 9,554 30.4 11 10 - - - 1 genome Lactococcus lactis cremoris SK11 plasmid3 [FIRMICUTES] (CP000428) circular 74,750 35.4 79 69 - 1 - 9 genome Lactococcus lactis cremoris SK11 plasmid4 [FIRMICUTES] (CP000429) circular 47,208 34.8 45 42 - - - 3 genome Lactococcus lactis cremoris SK11 plasmid5 [FIRMICUTES] (CP000430) circular 14,206 33.5 10 10 - - - - genome Lactococcus lactis lactis bv. diacetylactis cryptic plasmid pDR1-1 [FIRMICUTES] (AB079381) circular 7,412 33.7 6 6 - - - - plasmid Lactococcus lactis lactis bv. diacetylactis cryptic plasmid pDR1-1B [FIRMICUTES] (AB079380) circular 7,344 33.7 6 6 - - - - plasmid Lactococcus lactis lactis bv. diacetylactis plasmid pDBORO [FIRMICUTES] (DQ089807) circular 16,404 35.2 15 15 - - - - plasmid Lactococcus lactis lactis bv. diacetylactis plasmid pVF18 [FIRMICUTES] (JN172910) circular 18,977 33.9 25 21 - - - 4 plasmid Lactococcus lactis lactis bv. diacetylactis plasmid pVF21 [FIRMICUTES] (JN172911) circular 21,728 33.6 16 14 - - - 2 plasmid Lactococcus lactis lactis bv. diacetylactis plasmid pVF22 [FIRMICUTES] (JN172912) circular 22,166 35.1 21 19 - - - 2 plasmid Lactococcus lactis lactis bv. diacetylactis plasmid pVF50 [FIRMICUTES] (JN225497) circular 53,876 34.5 49 41 - - - 8 plasmid Lactococcus lactis lactis CV56 chromosome [FIRMICUTES] (CP002365) circular 2,399,458 35.2 2,415 2,269 19 65 - 62 genome Lactococcus lactis lactis CV56 plasmid pCV56A [FIRMICUTES] (CP002366) circular 44,098 32.1 42 41 - - - 1 genome Lactococcus lactis lactis CV56 plasmid pCV56B [FIRMICUTES] (CP002367) circular 35,934 34.5 35 31 - - - 4 genome Lactococcus lactis lactis CV56 plasmid pCV56C [FIRMICUTES] (CP002368) circular 31,442 32.5 30 27 - - - 3 genome Lactococcus lactis lactis CV56 plasmid pCV56D [FIRMICUTES] (CP002369) circular 5,543 32.2 7 6 - - - 1 genome Lactococcus lactis lactis Il1403 chromosome [FIRMICUTES] (AE005176) circular 2,365,589 35.3 2,406 2,277 19 63 - 45 genome Lactococcus lactis lactis K214 plasmid pK214 [FIRMICUTES] (X92946) circular 29,871 32.4 33 29 - - - 2 plasmid Lactococcus lactis lactis KF147 chromosome [FIRMICUTES] (CP001834) circular 2,598,144 34.9 2,560 2,413 19 69 - 59 genome Lactococcus lactis lactis KF147 plasmid pKF147A [FIRMICUTES] (CP001835) circular 37,510 32.4 35 32 - - - 3 genome Lactococcus lactis lactis plasmid pAH82 [FIRMICUTES] (AF243383) circular 20,331 34.4 17 17 - - - - plasmid Lactococcus lactis lactis plasmid pAR141 [FIRMICUTES] (DQ288662) circular 1,594 36.1 2 2 - - - - plasmid Lactococcus lactis lactis plasmid pBL1 [FIRMICUTES] (AF242367) circular 10,899 32.6 8 8 - - - - plasmid Lactococcus lactis lactis plasmid pCI305 [FIRMICUTES] (AF179848) circular 8,694 32.4 8 8 - - - - plasmid Lactococcus lactis lactis plasmid pIL1 [FIRMICUTES] (HM021326) circular 6,382 32.3 7 7 - - - - plasmid Lactococcus lactis lactis plasmid pIL2 [FIRMICUTES] (HM021327) circular 8,277 34.8 10 10 - - - - plasmid Lactococcus lactis lactis plasmid pIL3 [FIRMICUTES] (HM021328) circular 19,244 35.1 20 20 - - - - plasmid Lactococcus lactis lactis plasmid pIL4 [FIRMICUTES] (HM021329) circular 48,978 35.1 50 47 - - - - plasmid Lactococcus lactis lactis plasmid pIL5 [FIRMICUTES] (HM021330) circular 23,395 34.5 22 22 - - - - plasmid Lactococcus lactis lactis plasmid pIL7 [FIRMICUTES] (HM197723) circular 28,546 34.1 28 26 - - - - plasmid Lactococcus lactis lactis plasmid pKP1 [FIRMICUTES] (FR872378) circular 16,181 35.9 7 7 - - - - plasmid Lactococcus lactis lactis plasmid pL2 [FIRMICUTES] (DQ917780) circular 5,299 32.5 5 5 - - - - plasmid Lactococcus lactis lactis plasmid pS7a [FIRMICUTES] (AJ550509) circular 7,302 33.4 5 5 - - - - plasmid Lactococcus lactis lactis plasmid pS7b [FIRMICUTES] (AJ550510) circular 7,264 33.6 5 5 - - - - plasmid Lactococcus lactis plasmid pAH33 [FIRMICUTES] (AF207855) circular 6,159 35.9 7 7 - - - - plasmid Lactococcus lactis plasmid pCIS3 [FIRMICUTES] (AF153414) circular 6,159 35.9 4 3 - - - - plasmid Lactococcus lactis plasmid pCL2.1 [FIRMICUTES] (U26594) circular 2,047 34.0 3 2 - - 1 - plasmid Lactococcus lactis plasmid pCRL1127 [FIRMICUTES] (AF409136) circular 8,278 34.8 7 7 - - - - plasmid Lactococcus lactis plasmid pCRL291.1 [FIRMICUTES] (AF380336) circular 4,640 33.5 3 3 - - - - plasmid Lactococcus lactis plasmid pGdh442 [FIRMICUTES] (AY849557) circular 68,319 35.1 67 63 - - - 1 plasmid Lactococcus lactis plasmid pIL105 [FIRMICUTES] (AF116286) circular 8,506 29.8 7 7 - - - - plasmid Lactococcus lactis plasmid pKL001 [FIRMICUTES] (EU289287) circular 6,068 32.9 4 4 - - - - plasmid

32 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Lactococcus lactis plasmid pMRC01 [FIRMICUTES] (AE001272) circular 60,232 30.1 64 63 - - - - plasmid Lactococcus lactis plasmid pND324 [FIRMICUTES] (U44843) linear 3,602 33.4 3 3 - - - - plasmid Lactococcus lactis plasmid pNP40 [FIRMICUTES] (DQ534432) circular 64,980 32.3 62 62 - - - - plasmid Lactococcus lactis plasmid pSK11A [FIRMICUTES] (DQ149242) circular 10,372 30.9 14 13 - - - - plasmid Lactococcus lactis plasmid pSK11B [FIRMICUTES] (DQ149243) circular 13,332 34.3 15 14 - - - - plasmid Lactococcus lactis plasmid pSK11L [FIRMICUTES] (DQ149244) circular 47,165 34.8 45 40 - - - 1 plasmid Lactococcus lactis plasmid pSK11P [FIRMICUTES] (DQ149245) circular 75,814 35.4 83 61 - 1 - 2 plasmid Lactococcus lactis plasmid pSRQ700 [FIRMICUTES] (U16027) circular 7,784 34.2 9 9 - - - - plasmid Lactococcus lactis plasmid pSRQ800 [FIRMICUTES] (U35629) circular 7,858 31.3 7 7 - - - - plasmid Lactococcus lactis plasmid pSRQ900 [FIRMICUTES] (AF001314) circular 10,836 31.1 11 11 - - - - plasmid Laribacter hongkongensis HLHK9 chromosome [PROTEOBACTERIA] (CP001154) circular 3,169,329 62.4 3,001 2,771 21 78 1 130 genome Laribacter hongkongensis plasmid pHLHK22 [PROTEOBACTERIA] (EF679779) circular 15,665 61.1 12 12 - - - - plasmid Laribacter hongkongensis plasmid pHLHK8 [PROTEOBACTERIA] (AY858987) linear 8,266 53.9 4 4 - - - - plasmid Lawsonia intracellularis PHE/MN1-00 chromosome [PROTEOBACTERIA] (AM180252) circular 1,457,619 33.3 1,299 1,241 6 43 1 7 genome Lawsonia intracellularis PHE/MN1-00 plasmid 1 [PROTEOBACTERIA] (AM180253) circular 27,048 29.0 30 29 - - - 1 genome Lawsonia intracellularis PHE/MN1-00 plasmid 2 [PROTEOBACTERIA] (AM180254) circular 39,794 29.2 28 28 - - - - genome Lawsonia intracellularis PHE/MN1-00 plasmid 3 [PROTEOBACTERIA] (AM180255) circular 194,553 32.9 112 111 - - - 1 genome Leadbetterella byssophila DSM 17132 chromosome [BACTEROIDETES] (CP002305) circular 4,059,653 40.4 3,610 3,469 9 41 2 89 genome Legionella longbeachae NSW150 chromosome [PROTEOBACTERIA] (FN650140) circular 4,077,332 37.1 3,489 3,375 12 46 9 47 genome Legionella longbeachae NSW150 plasmid pLLOe [PROTEOBACTERIA] (FN650141) circular 71,826 38.2 71 67 - - - 4 genome Legionella pneumophila 2300/99 Alcoy chromosome [PROTEOBACTERIA] (CP001828) circular 3,516,334 38.4 3,131 3,042 9 44 2 34 genome Legionella pneumophila Corby chromosome [PROTEOBACTERIA] (CP000675) circular 3,576,470 38.5 3,207 3,104 9 44 1 49 genome Legionella pneumophila Lens chromosome [PROTEOBACTERIA] (CR628337) linear 3,345,687 38.4 2,960 2,850 9 43 1 56 genome Legionella pneumophila Lens plasmid pLPL [PROTEOBACTERIA] (CR628339) linear 59,832 38.4 53 52 - - - 1 genome Legionella pneumophila Paris chromosome [PROTEOBACTERIA] (CR628336) linear 3,503,610 38.4 3,102 3,012 9 43 1 36 genome Legionella pneumophila Paris plasmid pLPP [PROTEOBACTERIA] (CR628338) linear 131,885 37.4 140 134 - - - 6 genome Legionella pneumophila pneumophila ATCC 43290 chromosome [PROTEOBACTERIA] (CP003192) circular 3,359,001 38.2 3,002 2,937 9 43 1 12 genome Legionella pneumophila pneumophila HL06041035 chromosome [PROTEOBACTERIA] (FQ958211) circular 3,492,535 38.4 3,111 3,008 9 43 1 50 genome Legionella pneumophila pneumophila Lorraine chromosome [PROTEOBACTERIA] (FQ958210) circular 3,467,254 38.4 3,132 3,033 9 44 1 45 genome Legionella pneumophila pneumophila Lorraine plasmid pLELO [PROTEOBACTERIA] (FQ958212) circular 150,432 38.1 156 151 - - - 5 genome Legionella pneumophila pneumophila Philadelphia 1 chromosome [PROTEOBACTERIA] (AE017354) circular 3,397,754 38.3 3,003 2,943 9 43 - - genome Leifsonia xyli xyli CTCB07 chromosome [ACTINOBACTERIA] (AE016822) circular 2,584,158 67.7 2,507 2,160 3 45 2 297 genome Leptospira biflexa sv. Patoc str. Patoc 1 (Ames) chromosomeI [SPIROCHAETAE] (CP000777) circular 3,603,977 38.9 3,421 3,357 6 35 1 22 genome Leptospira biflexa sv. Patoc str. Patoc 1 (Ames) chromosomeII [SPIROCHAETAE] (CP000778) circular 277,995 39.3 270 269 - - - 1 genome Leptospira biflexa sv. Patoc str. Patoc 1 (Ames) plasmid p74 [SPIROCHAETAE] (CP000779) circular 74,117 37.5 60 60 - - - - genome Leptospira biflexa sv. Patoc str. Patoc 1 (Paris) chromosomeI [SPIROCHAETAE] (CP000786) circular 3,599,677 38.9 3,418 3,361 6 35 4 4 genome Leptospira biflexa sv. Patoc str. Patoc 1 (Paris) chromosomeII [SPIROCHAETAE] (CP000787) circular 277,655 39.3 270 270 - - - - genome Leptospira biflexa sv. Patoc str. Patoc 1 (Paris) plasmid p74 [SPIROCHAETAE] (CP000788) circular 74,116 37.5 60 59 - - - 1 genome Leptospira borgpetersenii sv. Hardjo-bovis str. JB197 chromosome1 [SPIROCHAETAE] (CP000350) circular 3,576,473 40.2 3,318 3,030 5 37 1 234 genome Leptospira borgpetersenii sv. Hardjo-bovis str. JB197 chromosome2 [SPIROCHAETAE] (CP000351) circular 299,762 40.4 272 247 - - - 24 genome Leptospira borgpetersenii sv. Hardjo-bovis str. L550 chromosome1 [SPIROCHAETAE] (CP000348) circular 3,614,446 40.2 3,381 3,111 5 37 1 212 genome Leptospira borgpetersenii sv. Hardjo-bovis str. L550 chromosome2 [SPIROCHAETAE] (CP000349) circular 317,336 40.2 286 259 - - - 26 genome Leptospira interrogans sv. Copenhageni str. Fiocruz L1-130 chromosome1 [SPIROCHAETAE] (AE016823) circular 4,277,185 35.0 3,667 3,453 5 37 1 51 genome Leptospira interrogans sv. Copenhageni str. Fiocruz L1-130 chromosome2 [SPIROCHAETAE] (AE016824) circular 350,181 35.0 294 284 - - - 3 genome Leptospira interrogans sv. Lai str. 56601 chromosome1 [SPIROCHAETAE] (AE010300) circular 4,338,762 35.0 3,448 3,390 5 37 - 16 genome Leptospira interrogans sv. Lai str. 56601 chromosome2 [SPIROCHAETAE] (AE010301) circular 359,372 35.1 293 292 - - - - genome Leptospira interrogans sv. Lai str. IPAV chromosome1 [SPIROCHAETAE] (CP001221) circular 4,349,158 35.0 3,710 3,521 5 37 1 62 genome Leptospira interrogans sv. Lai str. IPAV chromosome2 [SPIROCHAETAE] (CP001222) circular 359,372 35.1 305 295 - - - 3 genome Leptospirillum ferriphilum ML-04 chromosome [] (CP002919) circular 2,406,157 54.6 2,462 2,361 6 49 1 45 genome Leptospirillum ferrooxidans C2-3 chromosome [NITROSPIRAE] (AP012342) circular 2,559,538 50.0 2,555 2,464 9 51 1 30 genome Leptospirillum ferrooxidans plasmid p49879.1 [NITROSPIRAE] (AY941098) circular 28,878 57.8 32 32 - - - - plasmid Leptospirillum ferrooxidans plasmid p49879.2 [NITROSPIRAE] (AY941099) circular 28,012 55.2 33 33 - - - - plasmid Leptothrix cholodnii SP-6 chromosome [PROTEOBACTERIA] (CP001013) circular 4,909,403 68.9 4,361 4,239 6 50 2 64 genome Leptotrichia buccalis C-1013-b chromosome [FUSOBACTERIA] (CP001685) circular 2,465,610 29.6 2,309 2,182 15 46 2 64 genome Leuconostoc carnosum JB16 chromosome [FIRMICUTES] (CP003851) circular 1,645,096 37.2 1,609 1,520 12 66 - 11 genome Leuconostoc carnosum JB16 plasmid pKLC1 [FIRMICUTES] (CP003852) circular 21,990 38.0 20 17 - - - 3 genome Leuconostoc carnosum JB16 plasmid pKLC2 [FIRMICUTES] (CP003853) circular 29,615 35.5 33 31 - - - 2 genome Leuconostoc carnosum JB16 plasmid pKLC3 [FIRMICUTES] (CP003854) circular 40,165 35.3 44 43 - - - 1 genome Leuconostoc carnosum JB16 plasmid pKLC4 [FIRMICUTES] (CP003855) circular 36,602 34.9 38 36 - - - 2 genome Leuconostoc citreum KM20 chromosome [FIRMICUTES] (DQ489736) circular 1,796,284 39.0 1,787 1,678 12 69 - 28 genome Leuconostoc citreum KM20 plasmid pLCK1 [FIRMICUTES] (DQ489740) circular 38,713 37.4 43 37 - - - 6 genome Leuconostoc citreum KM20 plasmid pLCK2 [FIRMICUTES] (DQ489737) circular 31,463 38.0 35 29 - - - 6 genome Leuconostoc citreum KM20 plasmid pLCK3 [FIRMICUTES] (DQ489738) circular 17,971 33.0 21 20 - - - 1 genome Leuconostoc citreum KM20 plasmid pLCK4 [FIRMICUTES] (DQ489739) circular 12,183 36.9 14 14 - - - - genome Leuconostoc citreum plasmid pIH01 [FIRMICUTES] (AY737645) circular 1,822 39.2 1 1 - - - - plasmid Leuconostoc citreum plasmid pLC22R [FIRMICUTES] (AJ493278) circular 9,935 32.9 12 10 - - - - plasmid Leuconostoc gelidum gasicomitatum LMG 18811 chromosome [FIRMICUTES] (FN822744) circular 1,954,080 36.7 1,943 1,846 12 66 1 18 genome Leuconostoc gelidum JB7 chromosome [FIRMICUTES] (CP003839) circular 1,893,499 36.7 1,847 1,755 12 66 - 14 genome Leuconostoc kimchii C2 chromosome [FIRMICUTES] (CP002898) circular 1,877,273 37.9 1,881 1,786 12 67 - 16 genome Leuconostoc kimchii IMSNU 11154 chromosome [FIRMICUTES] (CP001758) circular 2,002,721 38.0 2,020 1,921 12 67 - 20 genome Leuconostoc kimchii IMSNU 11154 plasmid LkipL4701 [FIRMICUTES] (CP001753) circular 21,055 34.3 19 18 - - - 1 genome Leuconostoc kimchii IMSNU 11154 plasmid LkipL4704 [FIRMICUTES] (CP001754) circular 23,275 35.5 19 19 - - - - genome Leuconostoc kimchii IMSNU 11154 plasmid LkipL4719 [FIRMICUTES] (CP001755) circular 21,924 39.1 19 18 - - - 1 genome Leuconostoc kimchii IMSNU 11154 plasmid LkipL4726 [FIRMICUTES] (CP001756) circular 29,616 35.5 32 30 - - - 2 genome Leuconostoc mesenteroides mesenteroides ATCC 8293 chromosome [FIRMICUTES] (CP000414) circular 2,038,396 37.7 2,016 1,910 12 70 1 23 genome Leuconostoc mesenteroides mesenteroides ATCC 8293 pLEUM1 [FIRMICUTES] (CP000415) circular 37,367 35.4 45 38 - - - 7 plasmid Leuconostoc mesenteroides mesenteroides J18 chromosome [FIRMICUTES] (CP003101) circular 1,900,740 37.8 1,861 1,757 12 70 - 22 genome Leuconostoc mesenteroides mesenteroides J18 plasmid pKLE01 [FIRMICUTES] (CP003102) circular 37,252 34.8 43 42 - - - 1 genome Leuconostoc mesenteroides mesenteroides J18 plasmid pKLE02 [FIRMICUTES] (CP003103) circular 35,428 35.1 39 32 - - - 7 genome Leuconostoc mesenteroides mesenteroides J18 plasmid pKLE03 [FIRMICUTES] (CP003104) circular 24,548 38.3 24 23 - - - 1 genome Leuconostoc mesenteroides mesenteroides J18 plasmid pKLE04 [FIRMICUTES] (CP003105) circular 19,293 35.2 14 13 - - - 1 genome Leuconostoc mesenteroides mesenteroides plasmid pFR18 [FIRMICUTES] (Z99436) circular 1,828 37.3 1 1 - - - - plasmid Listeria grayi plasmid pLGUG1 [FIRMICUTES] (FR667693) circular 79,249 36.8 88 88 - - - - plasmid Listeria innocua Clip11262 chromosome [FIRMICUTES] (AL592022) circular 3,011,208 37.4 3,091 2,980 18 66 - 27 genome Listeria innocua Clip11262 plasmid pLI100 [FIRMICUTES] (AL592102) circular 81,905 35.5 80 73 - - - 7 genome Listeria ivanovii ivanovii PAM55 chromosome [FIRMICUTES] (FR687253) circular 2,928,879 37.1 2,878 2,717 18 67 - 74 genome Listeria monocytogenes 07PF0776 chromosome [FIRMICUTES] (CP003414) circular 2,901,562 38.0 2,880 2,727 18 67 - 67 genome

33 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Listeria monocytogenes 08-5578 chromosome [FIRMICUTES] (CP001602) circular 3,032,624 38.0 3,066 2,978 15 58 - 14 genome Listeria monocytogenes 08-5578 plasmid pLM5578 [FIRMICUTES] (CP001603) circular 77,054 36.6 77 73 - - - 4 genome Listeria monocytogenes 08-5923 chromosome [FIRMICUTES] (CP001604) circular 2,999,054 38.0 3,020 2,935 15 58 - 11 genome Listeria monocytogenes 10403S chromosome [FIRMICUTES] (CP002002) circular 2,903,106 38.0 2,906 2,809 18 67 - 11 genome Listeria monocytogenes ATCC 19117 chromosome [FIRMICUTES] (FR733643) circular 2,951,805 38.0 2,921 2,815 18 67 - 20 genome Listeria monocytogenes CLIP 80459 sv. 4b chromosome [FIRMICUTES] (FM242711) circular 2,912,690 38.1 2,883 2,786 18 67 - 11 genome Listeria monocytogenes EGD-e chromosome [FIRMICUTES] (AL591824) circular 2,944,528 38.0 3,055 2,867 18 67 99 6 genome Listeria monocytogenes F2365 sv. 4b chromosome [FIRMICUTES] (AE017262) circular 2,905,187 38.0 2,887 2,784 18 67 - 17 genome Listeria monocytogenes Finland 1998 chromosome [FIRMICUTES] (CP002004) circular 2,874,431 38.1 2,849 2,725 18 67 - 38 genome Listeria monocytogenes FSL R2-561 chromosome [FIRMICUTES] (CP002003) circular 2,973,801 38.0 2,994 2,867 18 67 - 41 genome Listeria monocytogenes HCC23 chromosome [FIRMICUTES] (CP001175) circular 2,976,212 38.2 3,035 2,926 18 67 - 23 genome Listeria monocytogenes J0161 chromosome [FIRMICUTES] (CP002001) circular 3,000,464 37.9 3,017 2,933 15 58 - 10 genome Listeria monocytogenes L312 chromosome [FIRMICUTES] (FR733642) circular 2,912,346 38.1 2,883 2,786 18 67 - 11 genome Listeria monocytogenes L99 sv. 4a chromosome [FIRMICUTES] (FM211688) circular 2,979,198 38.2 3,033 2,936 18 67 - 11 genome Listeria monocytogenes M7 chromosome [FIRMICUTES] (CP002816) circular 2,976,163 38.2 3,036 2,937 18 67 - 13 genome Listeria monocytogenes plasmid pLM33 [FIRMICUTES] (GU244485) circular 32,307 36.2 37 37 - - - - plasmid Listeria monocytogenes SLCC2372 sv. 1/2c chromosome [FIRMICUTES] (FR733648) circular 2,972,810 38.0 2,999 2,897 18 67 - 16 genome Listeria monocytogenes SLCC2372 sv. 1/2c plasmid pLM1-2cUG1 [FIRMICUTES] (FR667691) circular 50,100 35.5 53 52 - - - 1 genome Listeria monocytogenes SLCC2376 chromosome [FIRMICUTES] (FR733651) circular 2,840,185 38.3 2,809 2,705 18 67 - 18 genome Listeria monocytogenes SLCC2378 chromosome [FIRMICUTES] (FR733644) circular 2,941,360 38.0 2,921 2,812 18 67 - 23 genome Listeria monocytogenes SLCC2479 chromosome [FIRMICUTES] (FR733649) circular 2,972,172 38.0 2,995 2,898 18 65 - 13 genome Listeria monocytogenes SLCC2482 sv. 7 chromosome [FIRMICUTES] (FR720325) circular 2,936,689 38.0 2,906 2,770 18 67 - 50 genome Listeria monocytogenes SLCC2482 sv. 7 plasmid pLM7UG1 [FIRMICUTES] (FR667690) circular 50,100 35.5 53 51 - - - 2 genome Listeria monocytogenes SLCC2540 chromosome [FIRMICUTES] (FR733645) circular 2,976,958 37.9 2,948 2,849 18 67 - 13 genome Listeria monocytogenes SLCC2755 sv. 1/2b chromosome [FIRMICUTES] (FR733646) circular 2,966,146 38.1 2,924 2,811 18 67 - 27 genome Listeria monocytogenes SLCC2755 sv. 1/2b plasmid pLM1-2cUG1 [FIRMICUTES] (FR667692) circular 57,780 36.0 61 56 - - - 5 genome Listeria monocytogenes SLCC5850 chromosome [FIRMICUTES] (FR733647) circular 2,907,142 38.0 2,915 2,801 18 67 - 28 genome Listeria monocytogenes SLCC7179 chromosome [FIRMICUTES] (FR733650) circular 2,882,234 38.0 2,895 2,784 18 67 - 25 genome Listeria seeligeri SLCC3954 sv. 1/2b chromosome [FIRMICUTES] (FN557490) circular 2,797,636 37.4 2,770 2,661 18 67 - 22 genome Listeria welshimeri SLCC5334 sv. 6b chromosome [FIRMICUTES] (AM263198) circular 2,814,130 36.4 2,843 2,731 18 66 - 28 genome Lysinibacillus sphaericus C3-41 chromosome [FIRMICUTES] (CP000817) circular 4,639,821 37.3 4,785 4,584 31 85 - 85 genome Lysinibacillus sphaericus C3-41 plasmid pBsph [FIRMICUTES] (CP000818) circular 177,642 33.1 187 187 - - - - genome Lysinibacillus sphaericus plasmid pLG [FIRMICUTES] (AY325804) circular 11,066 37.5 23 23 - - - - plasmid Macrococcus caseolyticus JCSC5402 chromosome [FIRMICUTES] (AP009484) circular 2,102,324 36.9 2,192 2,090 13 49 - 40 genome Macrococcus caseolyticus JCSC5402 plasmid pMCCL1 [FIRMICUTES] (AP009485) circular 15,667 28.2 16 16 - - - - genome Macrococcus caseolyticus JCSC5402 plasmid pMCCL2 [FIRMICUTES] (AP009486) circular 80,545 30.8 84 84 - - - - genome Macrococcus caseolyticus JCSC5402 plasmid pMCCL4 [FIRMICUTES] (AP009488) circular 3,417 33.1 3 3 - - - - genome Macrococcus caseolyticus JCSC5402 plasmid pMCCL5 [FIRMICUTES] (AP009489) circular 4,398 31.6 5 5 - - - - genome Macrococcus caseolyticus JCSC5402 plasmid pMCCL6 [FIRMICUTES] (AP009490) circular 4,226 35.2 5 5 - - - - genome Macrococcus caseolyticus JCSC5402 plasmid pMCCL7 [FIRMICUTES] (AP009491) circular 4,061 36.3 5 5 - - - - genome Macrococcus caseolyticus JCSC5402 plasmid pMCCL8 [FIRMICUTES] (AP009492) circular 2,968 31.0 3 3 - - - - genome Mageeibacillus indolicus UPII9-5 chromosome [FIRMICUTES] (CP001850) circular 1,809,746 44.2 1,536 1,429 6 45 2 54 genome Magnetococcus marinus MC-1 chromosome [PROTEOBACTERIA] (CP000471) circular 4,719,581 54.2 3,844 3,729 9 45 3 58 genome Magnetospirillum gryphiswaldense MSR-1 plasmid pMSR-1 [PROTEOBACTERIA] (CU459004) circular 35,803 62.2 38 38 - - - - plasmid Magnetospirillum magneticum AMB-1 chromosome [PROTEOBACTERIA] (AP007255) circular 4,967,148 65.1 4,607 4,478 6 49 1 73 genome Magnetospirillum magneticum plasmid pMGT [PROTEOBACTERIA] (AB116387) circular 3,741 59.2 2 2 - - - - plasmid Mahella australiensis 50-1 BON chromosome [FIRMICUTES] (CP002360) circular 3,135,972 43.5 2,950 2,853 9 47 2 39 genome Mannheimia succiniciproducens MBEL55E chromosome [PROTEOBACTERIA] (AE016827) circular 2,314,078 42.5 2,170 2,060 19 59 1 31 genome Mannheimia varigena plasmid pMVSCS1 [PROTEOBACTERIA] (AJ319822) circular 5,621 42.4 5 5 - - - - plasmid Maribacter sp. HTCC2170 chromosome [BACTEROIDETES] (CP002157) circular 3,868,304 37.0 3,386 3,321 6 38 1 20 genome Maricaulis maris MCS10 chromosome [PROTEOBACTERIA] (CP000449) circular 3,368,780 62.7 3,160 3,064 6 45 3 42 genome Marinithermus hydrothermalis DSM 14884 chromosome [DEINOCOCCUS-THERMUS] (CP002630) circular 2,269,167 68.1 2,262 2,163 7 50 2 40 genome Marinitoga piezophila KA3 chromosome [THERMOTOGAE] (CP003257) circular 2,231,407 29.2 2,090 2,011 9 51 2 17 genome Marinitoga piezophila KA3 plasmid pMARPI01 [THERMOTOGAE] (CP003258) circular 13,386 26.5 14 14 - - - - genome Marinobacter adhaerens HP15 chromosome [PROTEOBACTERIA] (CP001978) circular 4,421,911 57.1 4,120 3,988 9 51 1 71 genome Marinobacter adhaerens HP15 plasmid pHP-187 [PROTEOBACTERIA] (CP001980) circular 187,465 51.0 146 140 - - - 6 genome Marinobacter adhaerens HP15 plasmid pHP-42e [PROTEOBACTERIA] (CP001979) circular 42,349 53.6 49 48 - - - 1 genome Marinobacter hydrocarbonoclasticus ATCC 49840 chromosome [PROTEOBACTERIA] (FO203363) circular 3,989,480 57.4 3,665 3,589 9 50 1 16 genome Marinobacter hydrocarbonoclasticus VT8 chromosome [PROTEOBACTERIA] (CP000514) circular 4,326,849 57.3 3,961 3,838 9 51 3 60 genome Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU01 [PROTEOBACTERIA] (CP000515) circular 239,623 54.1 236 235 - - - 1 genome Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU02 [PROTEOBACTERIA] (CP000516) circular 213,290 53.2 215 200 - - - 15 genome Marinobacter sp. BSs20148 chromosome [PROTEOBACTERIA] (CP003735) circular 4,063,864 54.1 3,715 3,569 9 49 1 87 genome Marinococcus halophilus plasmid pPL1 [FIRMICUTES] (U75508) linear 3,874 38.9 4 4 - - - - plasmid Marinomonas mediterranea MMB-1 chromosome [PROTEOBACTERIA] (CP002583) circular 4,684,316 44.1 4,252 4,094 21 80 2 55 genome Marinomonas posidonica IVIA-Po-181 chromosome [PROTEOBACTERIA] (CP002771) circular 3,899,940 44.3 3,600 3,473 24 80 2 21 genome Marinomonas sp. MWYL1 chromosome [PROTEOBACTERIA] (CP000749) circular 5,100,344 42.6 4,631 4,482 25 83 1 40 genome Marivirga tractuosa DSM 4126 chromosome [BACTEROIDETES] (CP002349) circular 4,511,574 35.5 3,794 3,721 6 39 2 26 genome Marivirga tractuosa DSM 4126 plasmid pFTRAC01 [BACTEROIDETES] (CP002350) circular 4,916 39.7 8 8 - - - - genome Megasphaera elsdenii DSM 20460 chromosome [FIRMICUTES] (HE576794) circular 2,474,718 52.8 2,293 2,164 21 64 1 43 genome Meiothermus ruber DSM 1279 chromosome [DEINOCOCCUS-THERMUS] (CP001743) circular 3,097,457 63.4 3,076 3,007 6 47 1 15 genome Meiothermus silvanus DSM 9946 chromosome [DEINOCOCCUS-THERMUS] (CP002042) circular 3,249,394 62.4 3,212 3,053 6 49 2 102 genome Meiothermus silvanus DSM 9946 plasmid pMESIL01 [DEINOCOCCUS-THERMUS] (CP002043) circular 347,854 64.6 322 305 - - - 17 genome Meiothermus silvanus DSM 9946 plasmid pMESIL02 [DEINOCOCCUS-THERMUS] (CP002044) circular 124,421 66.7 132 131 - - - 1 genome Melissococcus plutonius ATCC 35311 chromosome [FIRMICUTES] (AP012200) circular 1,891,014 31.4 1,670 1,442 12 60 - 156 genome Melissococcus plutonius ATCC 35311 plasmid pMP1 [FIRMICUTES] (AP012201) circular 177,718 29.2 141 131 - - - 10 genome Melissococcus plutonius DAT561 chromosome [FIRMICUTES] (AP012282) circular 1,846,178 31.4 1,587 1,444 12 54 - 77 genome Melissococcus plutonius DAT561 plasmid 1 [FIRMICUTES] (AP012283) linear 199,075 29.2 149 142 - - - 7 genome florum L1 chromosome [TENERICUTES] (AE017263) circular 793,224 27.0 715 680 6 29 - - genome Mesorhizobium ciceri bv. biserrulae WSM1271 chromosome [PROTEOBACTERIA] (CP002447) circular 6,264,489 62.7 6,100 5,870 6 52 4 168 genome Mesorhizobium ciceri bv. biserrulae WSM1271 plasmid pMESCI01 [PROTEOBACTERIA] (CP002448) circular 425,539 60.7 432 394 - - - 38 genome Mesorhizobium loti MAFF303099 chromosome [PROTEOBACTERIA] (BA000012) circular 7,036,071 62.7 6,740 6,555 6 52 1 126 genome Mesorhizobium loti MAFF303099 plasmid pMLa [PROTEOBACTERIA] (BA000013) circular 351,911 59.3 327 309 - - - 18 genome Mesorhizobium loti MAFF303099 plasmid pMLb [PROTEOBACTERIA] (AP003017) circular 208,315 59.9 221 201 - - - 20 genome Mesorhizobium opportunistum WSM2075 chromosome [PROTEOBACTERIA] (CP002279) circular 6,884,444 62.9 6,576 6,418 6 53 2 97 genome Mesotoga prima MesG1.Ag.4.2 chromosome [THERMOTOGAE] (CP003532) circular 2,974,229 45.5 2,737 2,634 6 46 24 27 genome Methylacidiphilum infernorum V4 chromosome [VERRUMICROBIA] (CP000975) circular 2,287,145 45.5 2,167 2,099 3 46 1 18 genome Methylibium petroleiphilum PM1 chromosome [PROTEOBACTERIA] (CP000555) circular 4,044,195 69.2 3,864 3,752 3 42 1 66 genome

34 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Methylibium petroleiphilum PM1 plasmid pRPME01 [PROTEOBACTERIA] (CP000556) circular 599,444 66.0 647 606 - 26 - 15 genome Methylobacillus flagellatus KT chromosome [PROTEOBACTERIA] (CP000284) circular 2,971,517 55.7 2,815 2,715 6 46 1 47 genome Methylobacterium chloromethanicum CM4 chromosome [PROTEOBACTERIA] (CP001298) circular 5,777,908 68.2 5,231 5,061 15 62 2 91 genome Methylobacterium chloromethanicum CM4 plasmid pMCHL01 [PROTEOBACTERIA] (CP001299) circular 380,207 66.3 323 300 - - - 23 genome Methylobacterium chloromethanicum CM4 plasmid pMCHL02 [PROTEOBACTERIA] (CP001300) circular 22,617 63.9 35 35 - - - - genome Methylobacterium extorquens AM1 chromosome [PROTEOBACTERIA] (CP001510) circular 5,511,322 68.7 5,056 4,899 15 57 3 82 genome Methylobacterium extorquens AM1 megaplasmid [PROTEOBACTERIA] (CP001511) circular 1,261,460 67.6 1,234 1,193 - 6 - 35 genome Methylobacterium extorquens AM1 plasmid p1META1 [PROTEOBACTERIA] (CP001512) circular 44,195 67.9 45 40 - - - 5 genome Methylobacterium extorquens AM1 plasmid p2META1 [PROTEOBACTERIA] (CP001513) circular 37,858 65.2 39 37 - - - 2 genome Methylobacterium extorquens AM1 plasmid p3META1 [PROTEOBACTERIA] (CP001514) circular 24,943 66.9 28 27 - - - 1 genome Methylobacterium extorquens DM4 chromosome [PROTEOBACTERIA] (FP103042) circular 5,943,768 68.1 5,465 5,273 15 58 16 103 genome Methylobacterium extorquens DM4 plasmid p1METDI [PROTEOBACTERIA] (FP103043) circular 141,504 65.3 132 119 - - - 13 genome Methylobacterium extorquens DM4 plasmid p2METDI [PROTEOBACTERIA] (FP103044) circular 38,579 63.7 34 33 - - - 1 genome Methylobacterium extorquens PA1 chromosome [PROTEOBACTERIA] (CP000908) circular 5,471,154 68.2 4,901 4,750 15 58 2 76 genome Methylobacterium nodulans ORS 2060 chromosome [PROTEOBACTERIA] (CP001349) circular 7,772,460 68.9 7,252 6,912 21 70 2 247 genome Methylobacterium nodulans ORS 2060 plasmid pMNOD01 [PROTEOBACTERIA] (CP001350) circular 487,734 65.9 434 379 - 2 - 53 genome Methylobacterium nodulans ORS 2060 plasmid pMNOD02 [PROTEOBACTERIA] (CP001351) circular 458,070 65.7 420 395 - - - 25 genome Methylobacterium nodulans ORS 2060 plasmid pMNOD03 [PROTEOBACTERIA] (CP001352) circular 40,463 64.2 44 42 - - - 2 genome Methylobacterium nodulans ORS 2060 plasmid pMNOD04 [PROTEOBACTERIA] (CP001353) circular 37,542 61.6 41 39 - - - 2 genome Methylobacterium nodulans ORS 2060 plasmid pMNOD05 [PROTEOBACTERIA] (CP001354) circular 20,286 61.4 16 15 - - - 1 genome Methylobacterium populi BJ001 chromosome [PROTEOBACTERIA] (CP001029) circular 5,800,441 69.4 5,349 5,211 15 56 2 65 genome Methylobacterium populi BJ001 plasmid pMPOP01 [PROTEOBACTERIA] (CP001030) circular 25,164 64.9 27 24 - - - 3 genome Methylobacterium populi BJ001 plasmid pMPOP02 [PROTEOBACTERIA] (CP001031) circular 23,392 66.8 25 24 - - - 1 genome Methylobacterium radiotolerans JCM 2831 chromosome [PROTEOBACTERIA] (CP001001) circular 6,077,833 71.5 5,681 5,562 12 55 2 50 genome Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01 [PROTEOBACTERIA] (CP001002) circular 586,164 69.6 500 480 6 1 - 13 genome Methylobacterium radiotolerans JCM 2831 plasmid pMRAD02 [PROTEOBACTERIA] (CP001003) circular 47,003 62.5 48 46 - - - 2 genome Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03 [PROTEOBACTERIA] (CP001004) circular 42,985 63.2 36 33 - 1 - 2 genome Methylobacterium radiotolerans JCM 2831 plasmid pMRAD04 [PROTEOBACTERIA] (CP001005) circular 37,743 63.7 37 35 - 1 - 1 genome Methylobacterium radiotolerans JCM 2831 plasmid pMRAD05 [PROTEOBACTERIA] (CP001006) circular 36,410 62.0 28 26 - - - 2 genome Methylobacterium radiotolerans JCM 2831 plasmid pMRAD06 [PROTEOBACTERIA] (CP001007) circular 27,836 61.0 22 19 - 1 - 2 genome Methylobacterium radiotolerans JCM 2831 plasmid pMRAD07 [PROTEOBACTERIA] (CP001008) circular 22,114 61.1 16 16 - - - - genome Methylobacterium radiotolerans JCM 2831 plasmid pMRAD08 [PROTEOBACTERIA] (CP001009) circular 21,022 65.1 22 22 - - - - genome Methylobacterium sp. 4-46 chromosome [PROTEOBACTERIA] (CP000943) circular 7,659,055 71.6 6,735 6,497 18 65 2 153 genome Methylobacterium sp. 4-46 plasmid pM44601 [PROTEOBACTERIA] (CP000944) circular 57,951 65.1 54 49 - - - 5 genome Methylobacterium sp. 4-46 plasmid pM44602 [PROTEOBACTERIA] (CP000945) circular 20,019 59.2 11 11 - - - - genome Methylocella silvestris BL2 chromosome [PROTEOBACTERIA] (CP001280) circular 4,305,430 63.1 3,982 3,836 6 48 2 90 genome Methylococcus capsulatus Bath chromosome [PROTEOBACTERIA] (AE017282) circular 3,304,561 63.6 3,052 2,956 2 54 - 42 genome Methylocystis sp. SC2 chromosome [PROTEOBACTERIA] (HE956757) circular 3,773,444 63.4 3,646 3,562 3 47 1 33 genome Methylomicrobium album BG8 plasmid pMETAL01 [PROTEOBACTERIA] (CM001476) circular 47,177 52.6 48 48 - - - - plasmid Methylomicrobium alcaliphilum 20Z plasmid MEALZ_p [PROTEOBACTERIA] (FO082061) circular 128,415 48.7 112 108 - - - 4 plasmid Methylomicrobium alcaliphilum chromosome [PROTEOBACTERIA] (FO082060) circular 4,668,296 48.7 3,990 3,860 9 45 1 74 genome Methylomonas methanica MC09 chromosome [PROTEOBACTERIA] (CP002738) circular 5,051,681 51.3 4,615 4,503 9 46 2 55 genome Methylophaga frappieri sp. JAM7 chromosome [PROTEOBACTERIA] (CP003380) circular 2,697,465 47.8 2,591 2,505 9 41 1 35 genome Methylophaga frappieri sp. JAM7 plasmid unnamed [PROTEOBACTERIA] (CP003381) circular 47,825 54.6 54 52 - - - 2 genome Methylophaga nitratireducenticrescens JAM1 chromosome [PROTEOBACTERIA] (CP003390) circular 3,137,191 44.7 2,997 2,892 9 44 1 51 genome Methylophaga thalassica plasmid pMTS1 [PROTEOBACTERIA] (AF233873) circular 1,995 42.5 3 3 - - - - plasmid Methylotenera mobilis JLW8 chromosome [PROTEOBACTERIA] (CP001672) circular 2,547,570 45.5 2,373 2,310 6 46 2 9 genome Methylotenera versatilis 301 chromosome [PROTEOBACTERIA] (CP002056) circular 3,059,871 42.6 2,824 2,731 9 47 2 35 genome Methylovorus glucosetrophus SIP3-4 chromosome [PROTEOBACTERIA] (CP001674) circular 2,995,511 54.9 2,832 2,771 6 47 2 6 genome Methylovorus glucosetrophus SIP3-4 plasmid pMsip01 [PROTEOBACTERIA] (CP001675) circular 76,680 45.7 72 72 - - - - genome Methylovorus sp. MP688 chromosome [PROTEOBACTERIA] (CP002252) circular 2,862,391 55.4 2,702 2,629 7 46 1 19 genome Micavibrio aeruginosavorus ARL-13 chromosome [PROTEOBACTERIA] (CP002382) circular 2,481,983 54.7 2,354 2,304 3 41 1 5 genome Microbacterium testaceum StLB037 chromosome [ACTINOBACTERIA] (AP012052) circular 3,982,034 70.3 3,633 3,532 6 45 1 49 genome Micrococcus luteus NCTC 2665 chromosome [ACTINOBACTERIA] (CP001628) circular 2,501,097 73.0 2,317 2,230 5 48 2 32 genome Micrococcus sp. 28 plasmid pSD10 [ACTINOBACTERIA] (AY034092) circular 50,709 68.0 51 51 - - - - plasmid Microcystis aeruginosa NIES-843 chromosome [CYANOBACTERIA] (AP009552) circular 5,842,795 42.3 5,484 5,120 6 42 2 314 genome Microlunatus phosphovorus NM-1 chromosome [ACTINOBACTERIA] (AP012204) circular 5,683,123 67.3 5,170 4,986 3 46 5 130 genome Micromonospora aurantiaca ATCC 27029 chromosome [ACTINOBACTERIA] (CP002162) circular 7,025,559 72.8 6,274 6,163 9 51 2 49 genome Micromonospora rosaria plasmid pMR2 [ACTINOBACTERIA] (AY860110) circular 11,188 67.6 13 13 - - - - plasmid Micromonospora sp. L5 chromosome [ACTINOBACTERIA] (CP002399) circular 6,962,533 72.8 6,218 6,093 8 52 2 62 genome Microscilla sp. PRE1 plasmid pSD15 [BACTEROIDETES] (AF339846) circular 101,648 41.5 64 64 - - - - plasmid Mobiluncus curtisii ATCC 43063 chromosome [ACTINOBACTERIA] (CP001992) circular 2,146,480 55.4 1,863 1,791 6 46 3 17 genome Modestobacter marinus BC501 chromosome [ACTINOBACTERIA] (FO203431) circular 5,575,517 74.1 5,293 5,110 9 47 14 112 genome Moorella thermoacetica ATCC 39073 chromosome [FIRMICUTES] (CP000232) circular 2,628,784 55.8 2,613 2,463 3 51 38 58 genome Moraxella bovis Epp63 plasmid pMBO-1 [PROTEOBACTERIA] (AB169976) circular 44,215 39.9 30 28 - - - 2 plasmid Moraxella bovis Epp63 plasmid pMBO-2 [PROTEOBACTERIA] (AB169977) circular 27,075 37.8 34 33 - - - 1 plasmid Moraxella bovis plasmid pMbo4.6 [PROTEOBACTERIA] (GQ998872) circular 4,658 38.6 4 4 - - - - plasmid Moraxella catarrhalis plasmid pEMCJH03 [PROTEOBACTERIA] (AY167745) circular 3,510 44.2 4 4 - - - - plasmid Moraxella catarrhalis plasmid pLQ510 [PROTEOBACTERIA] (AF129811) circular 12,084 37.9 7 7 - - - - plasmid Moraxella catarrhalis RH4 chromosome [PROTEOBACTERIA] (CP002005) circular 1,863,286 41.7 1,716 1,624 12 50 1 29 genome Morganella morganii plasmid R485 [PROTEOBACTERIA] (HE577112) circular 61,093 47.5 81 80 - - - 1 plasmid Muricauda ruestringensis DSM 13258 chromosome [BACTEROIDETES] (CP002999) circular 3,842,422 41.4 3,443 3,378 6 38 3 18 genome Mycobacterium abscessus ATCC 19977 chromosome [ACTINOBACTERIA] (CU458896) circular 5,067,172 64.0 4,970 4,920 3 47 - - genome Mycobacterium abscessus ATCC 19977 plasmid [ACTINOBACTERIA] (CU458745) circular 23,319 67.9 22 22 - - - - genome Mycobacterium abscessus bolletii F1725 plasmid BRA100 [ACTINOBACTERIA] (CP003505) circular 56,265 64.3 64 61 - - - - plasmid Mycobacterium abscessus bolletii GO 06 chromosome [ACTINOBACTERIA] (CP003699) circular 4,687,873 64.3 4,600 4,526 3 46 1 24 genome Mycobacterium africanum GM041182 chromosome [ACTINOBACTERIA] (FR878060) circular 4,389,314 65.6 4,089 3,970 3 45 3 68 genome Mycobacterium avium 104 chromosome [ACTINOBACTERIA] (CP000479) circular 5,475,491 69.0 5,092 4,863 3 46 2 178 genome Mycobacterium avium paratuberculosis K-10 chromosome [ACTINOBACTERIA] (AE016958) circular 4,829,781 69.3 4,457 4,289 3 46 1 118 genome Mycobacterium avium plasmid pVT2 [ACTINOBACTERIA] (AY056023) circular 12,868 66.4 7 7 - - - - plasmid Mycobacterium bovis AF2122/97 chromosome [ACTINOBACTERIA] (BX248333) circular 4,345,492 65.6 4,001 3,918 3 45 2 33 genome Mycobacterium bovis BCG Mexico chromosome [ACTINOBACTERIA] (CP002095) circular 4,350,386 65.7 4,052 3,946 3 45 2 56 genome Mycobacterium bovis BCG Pasteur 1173P2 chromosome [ACTINOBACTERIA] (AM408590) circular 4,374,522 65.6 4,079 3,967 3 47 3 59 genome Mycobacterium bovis BCG Tokyo 172 chromosome [ACTINOBACTERIA] (AP010918) circular 4,371,711 65.6 4,080 3,966 3 45 2 64 genome Mycobacterium canettii CIPT 140010059 chromosome [ACTINOBACTERIA] (HE572590) circular 4,482,059 65.6 4,137 3,999 3 45 3 87 genome Mycobacterium celatum plasmid pCLP [ACTINOBACTERIA] (AF312688) linear 22,688 65.5 18 18 - - - - plasmid Mycobacterium chubuense NBB4 chromosome [ACTINOBACTERIA] (CP003053) circular 5,583,723 68.7 5,222 5,107 6 46 2 61 genome

35 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Mycobacterium chubuense NBB4 plasmid pMYCCH.01 [ACTINOBACTERIA] (CP003054) circular 615,278 65.7 566 521 - - - 45 genome Mycobacterium chubuense NBB4 plasmid pMYCCH.02 [ACTINOBACTERIA] (CP003055) circular 143,623 63.9 115 112 - - - 3 genome Mycobacterium gilvum PYR-GCK chromosome [ACTINOBACTERIA] (CP000656) circular 5,619,607 67.9 5,295 5,175 6 45 3 66 genome Mycobacterium gilvum PYR-GCK plasmid pMFLV01 [ACTINOBACTERIA] (CP000657) linear 321,253 65.1 303 296 - 1 - 6 genome Mycobacterium gilvum PYR-GCK plasmid pMFLV02 [ACTINOBACTERIA] (CP000658) circular 25,309 64.2 25 24 - - - 1 genome Mycobacterium gilvum PYR-GCK plasmid pMFLV03 [ACTINOBACTERIA] (CP000659) circular 16,660 65.2 15 14 - - - 1 genome Mycobacterium gilvum Spyr1 chromosome [ACTINOBACTERIA] (CP002385) circular 5,547,747 67.9 5,241 5,077 6 47 2 109 genome Mycobacterium gilvum Spyr1 plasmid pMSPYR101 [ACTINOBACTERIA] (CP002386) circular 211,864 65.6 202 192 - - - 10 genome Mycobacterium gilvum Spyr1 plasmid pMSPYR102 [ACTINOBACTERIA] (CP002387) circular 23,681 64.5 23 23 - - - - genome Mycobacterium indicus pranii MTCC 9506 chromosome [ACTINOBACTERIA] (CP002275) circular 5,589,007 68.0 5,121 5,020 3 45 1 52 genome Mycobacterium intracellulare ATCC 13950 chromosome [ACTINOBACTERIA] (CP003322) circular 5,402,402 68.1 4,985 4,911 3 46 1 24 genome Mycobacterium intracellulare MOTT-02 chromosome [ACTINOBACTERIA] (CP003323) circular 5,409,696 68.1 5,005 4,912 3 47 1 42 genome Mycobacterium intracellulare MOTT-64 chromosome [ACTINOBACTERIA] (CP003324) circular 5,501,090 68.1 5,106 5,019 3 45 1 38 genome Mycobacterium leprae Br4923 chromosome [ACTINOBACTERIA] (FM211192) circular 3,268,071 57.8 2,796 2,251 3 45 2 493 genome Mycobacterium leprae TN chromosome [ACTINOBACTERIA] (AL450380) circular 3,268,203 57.8 2,770 1,605 3 45 2 1,115 genome Mycobacterium liflandii 128FXT plasmid pMUM002 [ACTINOBACTERIA] (EU271968) linear 190,588 62.9 98 86 - - - 12 genome Mycobacterium marinum DL240490 plasmid pMUM003 [ACTINOBACTERIA] (EU271967) linear 104,530 63.0 103 85 - - - 18 plasmid Mycobacterium marinum M chromosome [ACTINOBACTERIA] (CP000854) circular 6,636,827 65.7 5,503 5,398 3 46 2 54 genome Mycobacterium marinum M plasmid pMM23 [ACTINOBACTERIA] (CP000895) circular 23,317 67.9 28 28 - - - - genome Mycobacterium rhodesiae NBB3 chromosome [ACTINOBACTERIA] (CP003169) circular 6,415,739 65.5 6,190 6,044 6 46 3 91 genome Mycobacterium sinense JDM601 chromosome [ACTINOBACTERIA] (CP002329) circular 4,643,668 68.4 4,342 4,251 6 46 1 38 genome Mycobacterium smegmatis MC2 155 chromosome [ACTINOBACTERIA] (CP000480) circular 6,988,209 67.4 6,938 6,717 6 47 1 167 genome Mycobacterium smegmatis MC2 155 chromosome [ACTINOBACTERIA] (CP001663) circular 6,988,208 67.4 6,792 6,642 6 47 1 96 genome Mycobacterium sp. JLS chromosome [ACTINOBACTERIA] (CP000580) circular 6,048,425 68.4 5,781 5,658 6 48 2 67 genome Mycobacterium sp. KMS chromosome [ACTINOBACTERIA] (CP000518) circular 5,737,227 68.4 5,484 5,394 6 48 3 33 genome Mycobacterium sp. KMS plasmid pMKMS01 [ACTINOBACTERIA] (CP000519) circular 302,089 65.4 283 276 - - - 7 genome Mycobacterium sp. KMS plasmid pMKMS02 [ACTINOBACTERIA] (CP000520) circular 216,763 66.6 235 231 - - - 4 genome Mycobacterium sp. MCS chromosome [ACTINOBACTERIA] (CP000384) circular 5,705,448 68.5 5,442 5,347 6 48 2 39 genome Mycobacterium sp. MCS plasmid 1 [ACTINOBACTERIA] (CP000385) linear 215,075 66.6 234 231 - - - 3 genome Mycobacterium sp. MOTT36Y chromosome [ACTINOBACTERIA] (CP003491) circular 5,613,626 67.9 5,127 5,018 3 46 1 59 genome Mycobacterium tuberculosis CCDC5079 chromosome [ACTINOBACTERIA] (CP001641) circular 4,398,812 65.6 4,136 4,033 3 45 1 5 genome Mycobacterium tuberculosis CCDC5180 chromosome [ACTINOBACTERIA] (CP001642) circular 4,405,981 65.6 4,131 3,982 3 45 1 100 genome Mycobacterium tuberculosis CDC1551 chromosome [ACTINOBACTERIA] (AE000516) circular 4,403,837 65.6 4,113 3,964 3 45 1 100 genome Mycobacterium tuberculosis CTRI-2 chromosome [ACTINOBACTERIA] (CP002992) circular 4,398,525 65.6 4,122 4,028 3 45 1 45 genome Mycobacterium tuberculosis F11 chromosome [ACTINOBACTERIA] (CP000717) circular 4,424,435 65.6 4,139 4,043 3 45 1 47 genome Mycobacterium tuberculosis H37Ra chromosome [ACTINOBACTERIA] (CP000611) circular 4,419,977 65.6 4,153 4,069 3 45 3 33 genome Mycobacterium tuberculosis H37Rv chromosome [ACTINOBACTERIA] (AL123456) linear 4,411,532 65.6 4,008 3,906 3 45 22 30 genome Mycobacterium tuberculosis H37Rv chromosome [ACTINOBACTERIA] (CP003248) circular 4,411,709 65.6 4,132 4,058 3 45 1 25 genome Mycobacterium tuberculosis KZN 1435 chromosome [ACTINOBACTERIA] (CP001658) circular 4,398,250 65.6 4,118 4,014 3 45 1 55 genome Mycobacterium tuberculosis KZN 4207 chromosome [ACTINOBACTERIA] (CP001662) circular 4,394,985 65.6 4,115 4,028 3 45 1 38 genome Mycobacterium tuberculosis KZN 605 chromosome [ACTINOBACTERIA] (CP001976) circular 4,399,120 65.6 4,122 4,016 3 45 1 57 genome Mycobacterium tuberculosis RGTB327 chromosome [ACTINOBACTERIA] (CP003233) circular 4,380,119 65.6 3,739 3,691 3 45 - - genome Mycobacterium tuberculosis RGTB423 chromosome [ACTINOBACTERIA] (CP003234) circular 4,406,587 65.6 3,670 3,622 3 45 - - genome Mycobacterium tuberculosis UT205 chromosome [ACTINOBACTERIA] (HE608151) circular 4,418,088 64.9 4,020 3,882 3 45 1 89 genome Mycobacterium ulcerans Agy99 chromosome [ACTINOBACTERIA] (CP000325) circular 5,631,606 65.5 4,981 4,160 3 45 2 771 genome Mycobacterium ulcerans Agy99 plasmid pMUM001 [ACTINOBACTERIA] (BX649209) circular 174,155 62.8 81 81 - - - - genome Mycobacterium vanbaalenii PYR-1 chromosome [ACTINOBACTERIA] (CP000511) circular 6,491,865 67.8 6,103 5,963 6 49 3 82 genome agalactiae 5632 chromosome [TENERICUTES] (FP671138) circular 1,006,702 29.6 864 791 6 34 1 32 genome Mycoplasma agalactiae PG2 chromosome [TENERICUTES] (CU179680) circular 877,438 29.7 770 666 6 34 1 63 genome Mycoplasma arthritidis 158L3-1 chromosome [TENERICUTES] (CP001047) circular 820,453 30.7 671 631 1 36 - 4 genome Mycoplasma bovis HB0801 chromosome [TENERICUTES] (CP002058) circular 991,702 29.3 840 771 6 34 - 29 genome Mycoplasma bovis Hubei-1 chromosome [TENERICUTES] (CP002513) circular 948,121 29.3 811 737 4 34 - 36 genome Mycoplasma bovis PG45 chromosome [TENERICUTES] (CP002188) circular 1,003,404 29.3 865 788 6 34 1 36 genome Mycoplasma capricolum capricolum ATCC 27343 chromosome [TENERICUTES] (CP000123) circular 1,010,023 23.8 870 793 6 30 6 35 genome Mycoplasma conjunctivae HRC/581 chromosome [TENERICUTES] (FM864216) circular 846,214 28.6 695 652 3 28 1 11 genome Mycoplasma crocodyli MP145 chromosome [TENERICUTES] (CP001991) circular 934,379 27.0 787 740 6 34 1 6 genome Mycoplasma fermentans JER chromosome [TENERICUTES] (CP001995) circular 977,524 26.9 857 781 5 35 - 36 genome Mycoplasma fermentans M64 chromosome [TENERICUTES] (CP002458) circular 1,118,751 26.9 1,007 945 5 35 - 22 genome Mycoplasma gallisepticum CA06_2006.052-5-2P chromosome [TENERICUTES] (CP003512) circular 976,412 31.6 780 726 6 32 - 16 genome Mycoplasma gallisepticum F chromosome [TENERICUTES] (CP001873) circular 977,612 31.4 793 721 6 32 1 33 genome Mycoplasma gallisepticum NC06_2006.080-5-2P chromosome [TENERICUTES] (CP003511) circular 938,869 31.6 761 709 6 32 - 14 genome Mycoplasma gallisepticum NC08_2008.031-4-3P chromosome [TENERICUTES] (CP003513) circular 926,650 31.6 756 706 6 32 - 12 genome Mycoplasma gallisepticum NC95_13295-2-2P chromosome [TENERICUTES] (CP003507) circular 953,989 31.6 774 729 6 32 - 7 genome Mycoplasma gallisepticum NC96_1596-4-2P chromosome [TENERICUTES] (CP003508) circular 986,257 31.6 793 745 6 32 - 10 genome Mycoplasma gallisepticum NY01_2001.047-5-1P chromosome [TENERICUTES] (CP003509) circular 965,525 31.6 778 725 6 32 - 15 genome Mycoplasma gallisepticum R(high) chromosome [TENERICUTES] (CP001872) circular 1,012,027 31.5 806 739 6 32 1 28 genome Mycoplasma gallisepticum R(low) chromosome [TENERICUTES] (AE015450) circular 1,012,800 31.5 810 747 6 32 1 24 genome Mycoplasma gallisepticum VA94_7994-1-7P chromosome [TENERICUTES] (CP003506) circular 964,110 31.6 782 737 6 32 - 7 genome Mycoplasma gallisepticum WI01_2001.043-13-2P chromosome [TENERICUTES] (CP003510) circular 939,844 31.6 767 719 6 32 - 10 genome Mycoplasma genitalium G37 chromosome [TENERICUTES] (L43967) circular 580,076 31.7 557 507 3 36 4 7 genome Mycoplasma genitalium M2288 chromosome [TENERICUTES] (CP003773) circular 579,558 31.7 559 493 3 36 - 27 genome Mycoplasma genitalium M2321 chromosome [TENERICUTES] (CP003770) circular 579,977 31.7 558 484 3 36 - 35 genome Mycoplasma genitalium M6282 chromosome [TENERICUTES] (CP003771) circular 579,504 31.7 557 454 3 36 - 64 genome Mycoplasma genitalium M6320 chromosome [TENERICUTES] (CP003772) circular 579,796 31.7 559 484 3 36 - 36 genome Mycoplasma haemocanis Illinois chromosome [TENERICUTES] (CP003199) circular 919,992 35.3 1,182 1,130 3 31 - 18 genome Mycoplasma haemofelis Langford 1 chromosome [TENERICUTES] (FR773153) circular 1,147,259 38.9 1,559 1,487 3 31 1 37 genome Mycoplasma haemofelis Ohio2 chromosome [TENERICUTES] (CP002808) circular 1,155,937 38.8 1,585 1,495 3 31 - 56 genome Mycoplasma hominis ATCC 23114 chromosome [TENERICUTES] (FP236530) circular 665,445 27.1 591 541 6 33 - 11 genome Mycoplasma hyopneumoniae 168 chromosome [TENERICUTES] (CP002274) circular 925,576 28.5 733 688 3 30 - 12 genome Mycoplasma hyopneumoniae 232 chromosome [TENERICUTES] (AE017332) circular 892,758 28.6 711 657 3 30 2 19 genome Mycoplasma hyopneumoniae 7448 chromosome [TENERICUTES] (AE017244) circular 920,079 28.5 730 678 3 30 - 19 genome Mycoplasma hyopneumoniae J chromosome [TENERICUTES] (AE017243) circular 897,405 28.5 716 665 3 30 - 18 genome Mycoplasma hyorhinis GDL-1 chromosome [TENERICUTES] (CP003231) circular 837,480 25.9 777 692 3 30 - 52 genome Mycoplasma hyorhinis HUB-1 chromosome [TENERICUTES] (CP002170) circular 839,615 25.9 780 683 3 30 - 64 genome Mycoplasma hyorhinis MCLD chromosome [TENERICUTES] (CP002669) circular 829,709 25.9 770 672 3 30 - 65 genome Mycoplasma leachii 99/014/6 chromosome [TENERICUTES] (FR668087) circular 1,017,232 23.7 912 848 6 30 - 28 genome Mycoplasma leachii PG50 chromosome [TENERICUTES] (CP002108) circular 1,008,951 23.8 903 835 6 30 1 31 genome

36 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Mycoplasma leachii plasmid pBG7AU [TENERICUTES] (AF257325) circular 1,022 30.7 2 2 - - - - plasmid Mycoplasma mobile 163K chromosome [TENERICUTES] (AE017308) circular 777,079 25.0 688 649 3 28 2 6 genome Mycoplasma mycoides capri LC str. 95010 chromosome [TENERICUTES] (FQ377874) circular 1,153,998 23.8 979 918 6 30 - 25 genome Mycoplasma mycoides mycoides SC str. PG1 chromosome [TENERICUTES] (BX293980) circular 1,211,703 24.0 1,053 1,017 6 30 - - genome Mycoplasma mycoides plasmid pADB201 [TENERICUTES] (M25059) circular 1,717 29.5 2 2 - - - - plasmid Mycoplasma penetrans HF-2 chromosome [TENERICUTES] (BA000026) circular 1,358,633 25.7 1,065 1,022 3 30 - 10 genome Mycoplasma pneumoniae 309 chromosome [TENERICUTES] (AP012303) circular 817,176 40.0 776 705 3 36 1 31 genome Mycoplasma pneumoniae FH chromosome [TENERICUTES] (CP002077) circular 811,088 40.0 772 684 3 36 1 48 genome Mycoplasma pneumoniae M129 chromosome [TENERICUTES] (U00089) circular 816,394 40.0 1,061 691 3 37 315 15 genome Mycoplasma pulmonis UAB CTIP chromosome [TENERICUTES] (AL445566) circular 963,879 26.6 789 749 4 29 - 7 genome Mycoplasma putrefaciens KS1 chromosome [TENERICUTES] (CP003021) circular 832,603 27.0 740 678 6 30 - 26 genome Mycoplasma suis Illinois chromosome [TENERICUTES] (CP002525) circular 742,431 31.1 865 814 3 32 - 16 genome Mycoplasma suis KI3806 chromosome [TENERICUTES] (FQ790233) circular 709,270 31.1 814 775 3 32 - 4 genome Mycoplasma synoviae 53 chromosome [TENERICUTES] (AE017245) circular 799,476 28.5 722 658 7 34 - 23 genome Mycoplasma wenyonii Massachusetts chromosome [TENERICUTES] (CP003703) circular 650,228 33.9 714 678 3 31 - 2 genome Myxococcus fulvus HW-1 chromosome [PROTEOBACTERIA] (CP002830) circular 9,003,593 70.6 7,202 6,912 9 68 1 212 genome Myxococcus fulvus plasmid pMF1 [PROTEOBACTERIA] (EU137666) circular 18,634 68.7 23 23 - - - - plasmid Myxococcus xanthus DK 1622 chromosome [PROTEOBACTERIA] (CP000113) circular 9,139,763 68.9 7,248 7,146 12 65 3 22 genome Nakamurella multipartita DSM 44233 chromosome [ACTINOBACTERIA] (CP001737) circular 6,060,298 70.9 5,373 5,099 6 47 2 219 genome Natranaerobius thermophilus JW/NM-WN-LF chromosome [FIRMICUTES] (CP001034) circular 3,165,557 36.3 2,973 2,877 12 51 2 31 genome Natranaerobius thermophilus JW/NM-WN-LF plasmid pNTHE01 [FIRMICUTES] (CP001035) circular 17,207 34.2 16 16 - - - - genome Natranaerobius thermophilus JW/NM-WN-LF plasmid pNTHE02 [FIRMICUTES] (CP001036) circular 8,689 35.7 9 8 - - - 1 genome Nautilia profundicola AmH chromosome [PROTEOBACTERIA] (CP001279) circular 1,676,444 33.5 1,774 1,699 12 49 1 13 genome Neisseria gonorrhoeae FA 1090 chromosome [PROTEOBACTERIA] (AE004969) circular 2,153,922 52.7 1,989 1,886 12 55 - 35 genome Neisseria gonorrhoeae NCCP11945 chromosome [PROTEOBACTERIA] (CP001050) circular 2,232,025 52.4 2,415 2,219 12 55 1 128 genome Neisseria gonorrhoeae NCCP11945 plasmid pNGK [PROTEOBACTERIA] (CP001051) circular 4,153 51.5 10 10 - - - - genome Neisseria gonorrhoeae plasmid pEP5289 [PROTEOBACTERIA] (GU479466) circular 42,004 47.9 48 48 - - - - plasmid Neisseria gonorrhoeae plasmid pSJ5.2 [PROTEOBACTERIA] (DQ355980) circular 5,161 38.3 4 3 - - - - plasmid Neisseria gonorrhoeae TCDC-NG08107 chromosome [PROTEOBACTERIA] (CP002440) circular 2,154,835 52.5 2,254 2,196 12 46 - - genome Neisseria gonorrhoeae TCDC-NG08107 plasmid pNGTCDC08107 [PROTEOBACTERIA] (CP002441) circular 39,054 48.7 45 45 - - - - genome Neisseria lactamica 020-06 chromosome [PROTEOBACTERIA] (FN995097) circular 2,220,606 52.3 2,131 1,991 12 59 1 68 genome Neisseria lactamica plasmid pNL01 [PROTEOBACTERIA] (AY532623) circular 4,150 52.1 ------plasmid Neisseria lactamica plasmid pNL11 [PROTEOBACTERIA] (DQ227323) circular 2,251 46.2 1 1 - - - - plasmid Neisseria lactamica plasmid pNL14 [PROTEOBACTERIA] (DQ229164) circular 5,804 46.3 3 3 - - - - plasmid Neisseria lactamica plasmid pNL15 [PROTEOBACTERIA] (DQ227325) circular 2,248 46.0 1 1 - - - - plasmid Neisseria lactamica plasmid pNL18.1 [PROTEOBACTERIA] (DQ227326) circular 2,246 46.0 1 1 - - - - plasmid Neisseria lactamica plasmid pNL18.2 [PROTEOBACTERIA] (DQ229165) circular 3,155 42.4 2 2 - - - - plasmid Neisseria lactamica plasmid pNL3.1 [PROTEOBACTERIA] (DQ223897) circular 7,318 43.9 3 3 - - - - plasmid Neisseria lactamica plasmid pNL7.1 [PROTEOBACTERIA] (DQ227324) circular 2,248 46.0 1 1 - - - - plasmid Neisseria lactamica plasmid pNL871104 [PROTEOBACTERIA] (DQ229166) circular 5,768 46.1 3 3 - - - - plasmid Neisseria meningitidis 053442 chromosome [PROTEOBACTERIA] (CP000381) circular 2,153,416 51.7 2,219 2,048 12 59 1 99 genome Neisseria meningitidis 8013 chromosome [PROTEOBACTERIA] (FM999788) circular 2,277,550 51.4 2,338 2,154 12 59 1 112 genome Neisseria meningitidis alpha14 chromosome [PROTEOBACTERIA] (AM889136) circular 2,145,295 51.9 2,196 2,009 12 58 1 116 genome Neisseria meningitidis alpha710 chromosome [PROTEOBACTERIA] (CP001561) circular 2,242,947 51.7 2,310 2,130 12 57 1 110 genome Neisseria meningitidis FAM18 chromosome [PROTEOBACTERIA] (AM421808) circular 2,194,961 51.6 2,260 2,098 12 59 1 90 genome Neisseria meningitidis G2136 chromosome [PROTEOBACTERIA] (CP002419) circular 2,184,862 51.7 2,262 2,100 12 59 1 90 genome Neisseria meningitidis H44/76 chromosome [PROTEOBACTERIA] (CP002420) circular 2,240,883 51.4 2,307 2,157 12 59 1 78 genome Neisseria meningitidis M01-240149 chromosome [PROTEOBACTERIA] (CP002421) circular 2,223,518 51.4 2,291 2,106 12 59 1 113 genome Neisseria meningitidis M01-240355 chromosome [PROTEOBACTERIA] (CP002422) circular 2,287,777 51.5 2,330 2,146 12 59 1 112 genome Neisseria meningitidis M04-240196 chromosome [PROTEOBACTERIA] (CP002423) circular 2,250,449 51.4 2,312 2,146 12 59 1 94 genome Neisseria meningitidis MC58 chromosome [PROTEOBACTERIA] (AE002098) circular 2,272,360 51.5 2,104 1,943 12 59 - 90 genome Neisseria meningitidis NZ-05/33 chromosome [PROTEOBACTERIA] (CP002424) circular 2,248,966 51.3 2,322 2,127 12 59 1 123 genome Neisseria meningitidis WUE 2594 chromosome [PROTEOBACTERIA] (FR774048) circular 2,227,255 51.8 2,322 2,154 12 55 1 100 genome Neisseria meningitidis Z2491 chromosome [PROTEOBACTERIA] (AL157959) circular 2,184,406 51.8 2,257 2,105 12 58 1 81 genome Neorickettsia risticii Illinois chromosome [PROTEOBACTERIA] (CP001431) circular 879,977 41.3 807 759 3 33 1 11 genome Neorickettsia sennetsu Miyayama chromosome [PROTEOBACTERIA] (CP000237) circular 859,006 41.1 794 753 3 33 3 2 genome Niastella koreensis GR20-10 chromosome [BACTEROIDETES] (CP003178) circular 9,033,684 44.9 7,244 7,107 9 55 2 71 genome Nitratifractor salsuginis DSM 16511 chromosome [PROTEOBACTERIA] (CP002452) circular 2,101,285 53.9 2,146 2,076 6 43 2 19 genome Nitratiruptor sp. SB155-2 chromosome [PROTEOBACTERIA] (AP009178) circular 1,877,931 39.7 1,980 1,911 9 45 1 14 genome Nitrobacter hamburgensis X14 chromosome [PROTEOBACTERIA] (CP000319) circular 4,406,967 61.7 4,140 3,900 3 56 3 178 genome Nitrobacter hamburgensis X14 plasmid1 [PROTEOBACTERIA] (CP000320) circular 294,829 60.4 298 252 - - - 46 genome Nitrobacter hamburgensis X14 plasmid2 [PROTEOBACTERIA] (CP000321) circular 188,318 61.2 181 169 - - - 12 genome Nitrobacter hamburgensis X14 plasmid3 [PROTEOBACTERIA] (CP000322) circular 121,408 61.7 132 120 - - - 12 genome Nitrobacter winogradskyi Nb-255 chromosome [PROTEOBACTERIA] (CP000115) circular 3,402,093 62.0 3,270 3,146 3 49 3 69 genome Nitrosococcus halophilus Nc4 chromosome [PROTEOBACTERIA] (CP001798) circular 4,079,427 51.6 3,832 3,654 6 44 2 126 genome Nitrosococcus halophilus Nc4 plasmid pNHAL01 [PROTEOBACTERIA] (CP001799) circular 65,833 53.0 63 60 - - - 3 genome Nitrosococcus oceani ATCC 19707 chromosome [PROTEOBACTERIA] (CP000127) circular 3,481,691 50.3 3,219 3,103 6 46 3 61 genome Nitrosococcus oceani ATCC 19707 plasmid A [PROTEOBACTERIA] (CP000126) circular 40,420 52.4 46 46 - - - - genome Nitrosococcus watsonii C-113 chromosome [PROTEOBACTERIA] (CP002086) circular 3,328,570 50.1 3,056 2,877 6 45 2 125 genome Nitrosococcus watsonii C-113 plasmid pNWAT01 [PROTEOBACTERIA] (CP002087) circular 39,105 51.4 42 39 - - - 3 genome Nitrosococcus watsonii C-113 plasmid pNWAT02e [PROTEOBACTERIA] (CP002088) circular 5,611 53.7 8 8 - - - - genome Nitrosomonas europaea ATCC 19718 chromosome [PROTEOBACTERIA] (AL954747) circular 2,812,094 50.7 2,687 2,572 3 41 4 67 genome Nitrosomonas eutropha C91 chromosome [PROTEOBACTERIA] (CP000450) circular 2,661,057 48.5 2,574 2,450 3 41 3 77 genome Nitrosomonas eutropha C91 plasmid1 [PROTEOBACTERIA] (CP000451) circular 65,132 49.8 58 57 - - - 1 genome Nitrosomonas eutropha C91 plasmid2 [PROTEOBACTERIA] (CP000452) circular 55,635 49.7 62 62 - - - - genome Nitrosomonas sp. AL212 chromosome [PROTEOBACTERIA] (CP002552) circular 3,180,526 44.8 2,999 2,855 3 38 2 101 genome Nitrosomonas sp. AL212 plasmid pNAL21201 [PROTEOBACTERIA] (CP002553) circular 92,707 42.8 90 86 - - - 4 genome Nitrosomonas sp. AL212 plasmid pNAL21202 [PROTEOBACTERIA] (CP002554) circular 63,790 45.4 67 64 - - - 3 genome Nitrosomonas sp. Is79A3 chromosome [PROTEOBACTERIA] (CP002876) circular 3,783,444 45.4 3,515 3,354 3 38 2 118 genome Nitrosomonas sp. plasmid pAYL [PROTEOBACTERIA] (AB018481) circular 1,910 47.3 1 1 - - - - plasmid Nitrosospira multiformis ATCC 25196 chromosome [PROTEOBACTERIA] (CP000103) circular 3,184,243 53.9 2,891 2,773 3 43 3 68 genome Nitrosospira multiformis ATCC 25196 plasmid1 [PROTEOBACTERIA] (CP000104) circular 18,871 49.5 18 18 - - - - genome Nitrosospira multiformis ATCC 25196 plasmid2 [PROTEOBACTERIA] (CP000105) circular 17,036 50.0 17 17 - - - - genome Nitrosospira multiformis ATCC 25196 plasmid3 [PROTEOBACTERIA] (CP000106) circular 14,159 49.6 18 18 - - - - genome Nitrospira defluvii chromosome [NITROSPIRAE] (FP929003) circular 4,317,083 59.0 3,991 3,879 3 46 1 62 genome Nocardia aobensis plasmid pYS1 [ACTINOBACTERIA] (GU066867) circular 4,326 65.1 3 3 - - - - plasmid Nocardia brasiliensis ATCC 700358 chromosome [ACTINOBACTERIA] (CP003876) circular 9,436,348 68.0 8,430 8,243 9 51 1 126 genome

37 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Nocardia cyriacigeorgica chromosome [ACTINOBACTERIA] (FO082843) circular 6,194,645 68.4 5,558 5,405 9 49 1 94 genome Nocardia farcinica IFM 10152 chromosome [ACTINOBACTERIA] (AP006618) circular 6,021,225 70.8 5,615 5,485 9 53 3 65 genome Nocardia farcinica IFM 10152 plasmid pNF1 [ACTINOBACTERIA] (AP006619) circular 184,026 67.2 169 164 - - - 5 genome Nocardia farcinica IFM 10152 plasmid pNF2 [ACTINOBACTERIA] (AP006620) circular 87,093 68.4 89 86 - - - 3 genome Nocardia sp. 107 plasmid pXT107 [ACTINOBACTERIA] (DQ399903) circular 4,335 65.0 7 7 - - - - plasmid Nocardioides sp. JS614 chromosome [ACTINOBACTERIA] (CP000509) circular 4,985,871 71.7 4,783 4,657 6 46 3 71 genome Nocardioides sp. JS614 plasmid pNOCA01 [ACTINOBACTERIA] (CP000508) circular 307,814 68.0 272 261 - - - 11 genome Nocardiopsis alba ATCC BAA-2165 chromosome [ACTINOBACTERIA] (CP003788) circular 5,848,211 69.6 5,040 4,807 15 55 1 162 genome Nocardiopsis dassonvillei dassonvillei DSM 43111 chromosome 1 [ACTINOBACTERIA] (CP002040) circular 5,767,958 72.8 4,789 4,673 9 46 2 59 genome Nocardiopsis dassonvillei dassonvillei DSM 43111 chromosome 2 [ACTINOBACTERIA] (CP002041) circular 775,354 72.0 701 680 6 10 - 5 genome Nocardiopsis sp. 90127 plasmid pSQ10 [ACTINOBACTERIA] (DQ399904) circular 18,219 71.9 17 17 - - - - plasmid Nostoc punctiforme PCC 73102 chromosome [CYANOBACTERIA] (CP001037) circular 8,234,322 41.4 6,747 6,314 12 74 2 345 genome Nostoc punctiforme PCC 73102 pNPUN01 [CYANOBACTERIA] (CP001038) circular 354,564 40.5 289 275 - - - 14 genome Nostoc punctiforme PCC 73102 pNPUN02 [CYANOBACTERIA] (CP001039) circular 254,918 40.7 237 217 - - - 20 genome Nostoc punctiforme PCC 73102 pNPUN03 [CYANOBACTERIA] (CP001040) circular 123,028 40.9 89 86 - - - 3 genome Nostoc punctiforme PCC 73102 pNPUN04 [CYANOBACTERIA] (CP001041) circular 65,940 41.5 54 49 - - - 5 genome Nostoc punctiforme PCC 73102 pNPUN05 [CYANOBACTERIA] (CP001042) circular 26,419 42.3 26 25 - - - 1 genome Nostoc sp. PCC 7120 chromosome [CYANOBACTERIA] (BA000019) circular 6,413,771 41.3 5,282 5,129 12 47 5 89 genome Nostoc sp. PCC 7120 pCC7120alpha [CYANOBACTERIA] (BA000020) circular 408,101 40.5 374 337 - - - 37 genome Nostoc sp. PCC 7120 pCC7120beta [CYANOBACTERIA] (AP003602) circular 186,614 40.2 184 178 - - - 6 genome Nostoc sp. PCC 7120 pCC7120delta [CYANOBACTERIA] (AP003604) circular 55,414 41.6 86 59 - 21 - 6 genome Nostoc sp. PCC 7120 pCC7120epsilon [CYANOBACTERIA] (AP003605) circular 40,340 40.9 33 32 - - - 1 genome Nostoc sp. PCC 7120 pCC7120gamma [CYANOBACTERIA] (AP003603) circular 101,965 41.0 84 80 - - - 4 genome Nostoc sp. PCC 7120 pCC7120zeta [CYANOBACTERIA] (AP003606) circular 5,584 44.2 8 8 - - - - genome Nostoc sp. PCC 7524 plasmid pDU1 [CYANOBACTERIA] (AF516141) linear 6,361 45.4 6 6 - - - - plasmid Novosphingobium aromaticivorans DSM 12444 chromosome [PROTEOBACTERIA] (CP000248) circular 3,561,584 65.2 3,383 3,291 9 56 3 24 genome Novosphingobium aromaticivorans DSM 12444 plasmid pNL1 [PROTEOBACTERIA] (CP000676) circular 184,462 62.3 182 176 - - - 6 genome Novosphingobium aromaticivorans DSM 12444 plasmid pNL2 [PROTEOBACTERIA] (CP000677) circular 487,268 65.9 432 430 - - - 2 genome Novosphingobium aromaticivorans plasmid pNL1 [PROTEOBACTERIA] (AF079317) circular 184,457 62.2 186 186 - - - - plasmid Novosphingobium pentaromativorans US6-1 plasmid [PROTEOBACTERIA] (AGFM01000122) circular 188,476 62.6 181 172 - - - 9 plasmid Novosphingobium pentaromativorans US6-1 plasmid pLA2 [PROTEOBACTERIA] (AGFM01000123) circular 60,085 60.2 77 74 - - - 3 plasmid Novosphingobium sp. PP1Y chromosome [PROTEOBACTERIA] (FR856862) circular 3,911,486 63.7 3,674 3,550 9 59 1 55 genome Novosphingobium sp. PP1Y plasmid Lpl [PROTEOBACTERIA] (FR856860) circular 192,103 60.7 171 161 - - - 10 genome Novosphingobium sp. PP1Y plasmid Mpl [PROTEOBACTERIA] (FR856861) circular 1,161,602 62.3 1,000 979 - - - 21 genome Novosphingobium sp. PP1Y plasmid Spl [PROTEOBACTERIA] (FR856859) circular 48,714 60.1 52 48 - - - 4 genome Oceanimonas sp. GK1 chromosome [PROTEOBACTERIA] (CP003171) circular 3,514,537 61.1 3,290 3,164 22 89 1 14 genome Oceanimonas sp. GK1 plasmid pOCEGK01 [PROTEOBACTERIA] (CP003172) circular 8,462 55.0 9 9 - - - - genome Oceanimonas sp. GK1 plasmid pOCEGK02 [PROTEOBACTERIA] (CP003173) circular 4,245 54.4 4 4 - - - - genome Oceanithermus profundus DSM 14977 chromosome [DEINOCOCCUS-THERMUS] (CP002361) circular 2,303,940 70.0 2,259 2,195 6 46 2 10 genome Oceanithermus profundus DSM 14977 plasmid pOCEPR01 [DEINOCOCCUS-THERMUS] (CP002362) circular 135,351 66.2 145 144 - - - 1 genome Oceanobacillus iheyensis HTE831 chromosome [FIRMICUTES] (BA000028) circular 3,630,528 35.7 3,558 3,432 22 70 1 33 genome Ochrobactrum anthropi ATCC 49188 chromosome1 [PROTEOBACTERIA] (CP000758) circular 2,887,297 56.1 2,853 2,779 6 42 3 23 genome Ochrobactrum anthropi ATCC 49188 chromosome2 [PROTEOBACTERIA] (CP000759) circular 1,895,911 56.2 1,737 1,699 6 16 - 16 genome Ochrobactrum anthropi ATCC 49188 plasmid pOANT01 [PROTEOBACTERIA] (CP000760) circular 170,351 56.2 173 161 - - - 12 genome Ochrobactrum anthropi ATCC 49188 plasmid pOANT02 [PROTEOBACTERIA] (CP000761) circular 101,491 58.5 100 93 - - - 7 genome Ochrobactrum anthropi ATCC 49188 plasmid pOANT03 [PROTEOBACTERIA] (CP000762) circular 93,589 54.3 93 90 - - - 3 genome Ochrobactrum anthropi plasmid pW240 [PROTEOBACTERIA] (DQ979387) circular 4,227 50.6 2 2 - - - - plasmid Odoribacter splanchnicus DSM 20712 chromosome [BACTEROIDETES] (CP002544) circular 4,392,288 43.4 3,718 3,558 12 60 2 86 genome Oenococcus kitaharae DSM 17330 unnamed plasmid [FIRMICUTES] (CM001399) circular 8,313 37.6 13 12 - - - 1 plasmid Oenococcus oeni plasmid pRS2 [FIRMICUTES] (AJ310613) circular 2,544 35.4 3 3 - - - - plasmid Oenococcus oeni PSU-1 chromosome [FIRMICUTES] (CP000411) circular 1,780,517 37.9 1,799 1,662 6 43 - 88 genome Oligotropha carboxidovorans OM4 chromosome [PROTEOBACTERIA] (CP002821) circular 3,539,447 62.5 3,363 3,289 3 49 1 21 genome Oligotropha carboxidovorans OM4 plasmid pHCG3B [PROTEOBACTERIA] (CP002822) circular 133,055 60.6 126 124 - - - 2 genome Oligotropha carboxidovorans OM4 plasmid pOC167B [PROTEOBACTERIA] (CP002823) circular 167,269 60.6 166 164 - - - 2 genome Oligotropha carboxidovorans OM5 chromosome [PROTEOBACTERIA] (CP001196) circular 3,745,629 62.4 3,550 3,461 3 49 1 36 genome Oligotropha carboxidovorans OM5 chromosome [PROTEOBACTERIA] (CP002826) circular 3,595,748 62.5 3,410 3,347 3 49 1 10 genome Oligotropha carboxidovorans OM5 plasmid pHCG3 [PROTEOBACTERIA] (CP002827) circular 133,057 60.6 127 126 - - - 1 genome Oligotropha carboxidovorans OM5 plasmid pOC167 [PROTEOBACTERIA] (CP002828) circular 167,269 60.6 166 164 - - - 2 genome Olsenella uli DSM 7084 chromosome [ACTINOBACTERIA] (CP002106) circular 2,051,896 64.7 1,793 1,707 3 49 2 32 genome Onion yellows phytoplasma OY-M chromosome [TENERICUTES] (AP006628) circular 853,092 27.8 901 749 6 32 - 114 genome Onion yellows phytoplasma plasmid EcOYNIM_1998 [TENERICUTES] (AB479508) circular 5,044 24.2 6 6 - - - - plasmid Onion yellows phytoplasma plasmid EcOYNIM_1999 [TENERICUTES] (AB479509) circular 5,044 24.2 6 6 - - - - plasmid Onion yellows phytoplasma plasmid EcOYNIM_2000 [TENERICUTES] (AB479510) circular 5,044 24.2 6 6 - - - - plasmid Onion yellows phytoplasma plasmid EcOYNIM_2002-2004 [TENERICUTES] (AB479511) circular 5,009 24.1 6 4 - - - 2 plasmid Onion yellows phytoplasma plasmid EcOYNIM_2005 [TENERICUTES] (AB479512) circular 5,009 24.1 6 4 - - - 2 plasmid Onion yellows phytoplasma plasmid pOYM [TENERICUTES] (AB479514) circular 3,932 24.3 5 5 - - - - plasmid Onion yellows phytoplasma plasmid unknown [TENERICUTES] (AB097150) circular 5,045 24.3 6 6 - - - - plasmid Opitutus terrae PB90-1 chromosome [VERRUMICROBIA] (CP001032) circular 5,957,605 65.3 4,656 4,518 3 62 2 71 genome Orientia tsutsugamushi Boryong chromosome [PROTEOBACTERIA] (AM494475) linear 2,127,051 30.5 2,019 1,565 3 34 1 416 genome Orientia tsutsugamushi Ikeda chromosome [PROTEOBACTERIA] (AP008981) circular 2,008,987 30.5 1,901 1,532 3 34 1 331 genome Ornithobacterium rhinotracheale DSM 15997 chromosome [BACTEROIDETES] (CP003283) circular 2,399,175 37.2 2,289 2,210 9 43 2 25 genome Ornithobacterium rhinotracheale plasmid pOR1 [BACTEROIDETES] (AY513488) circular 14,787 35.7 14 14 - - - - plasmid Oscillibacter valericigenes Sjm 18-20 chromosome [FIRMICUTES] (AP012044) circular 4,410,036 53.3 4,296 4,058 9 61 3 165 genome Oscillibacter valericigenes Sjm 18-20 plasmid pOBV01 [FIRMICUTES] (AP012045) circular 60,586 43.3 62 62 - - - - genome Owenweeksia hongkongensis DSM 17368 chromosome [BACTEROIDETES] (CP003156) circular 4,000,057 40.2 3,518 3,454 6 37 2 19 genome Paenibacillus mucilaginosus 3016 chromosome [FIRMICUTES] (CP003235) circular 8,739,048 58.3 7,324 6,700 42 173 1 408 genome Paenibacillus mucilaginosus K02 chromosome [FIRMICUTES] (CP003422) circular 8,819,200 58.3 7,289 7,016 39 150 1 83 genome Paenibacillus mucilaginosus KNP414 chromosome [FIRMICUTES] (CP002869) circular 8,663,821 58.4 7,179 6,919 39 110 6 105 genome Paenibacillus polymyxa E681 chromosome [FIRMICUTES] (CP000154) circular 5,394,883 45.8 4,796 4,528 36 91 1 140 genome Paenibacillus polymyxa M1 chromosome [FIRMICUTES] (HE577054) circular 5,864,546 45.2 5,279 5,067 42 110 1 59 genome Paenibacillus polymyxa M1 plasmid pPPM1a [FIRMICUTES] (HE577055) circular 366,576 38.4 313 306 - - - 7 genome Paenibacillus polymyxa SC2 chromosome [FIRMICUTES] (CP002213) circular 5,728,392 45.2 5,107 4,897 40 110 1 59 genome Paenibacillus polymyxa SC2 plasmid pSC2 [FIRMICUTES] (CP002214) circular 510,118 37.6 639 576 - 51 - 12 genome Paenibacillus sp. JDR-2 chromosome [FIRMICUTES] (CP001656) circular 7,184,930 50.3 6,322 6,128 35 88 2 69 genome Paenibacillus sp. Y412MC10 chromosome [FIRMICUTES] (CP001793) circular 7,121,665 51.2 6,302 6,152 24 73 2 51 genome Paenibacillus terrae HPL-003 chromosome [FIRMICUTES] (CP003107) circular 6,083,395 46.8 5,396 5,137 28 89 1 141 genome Paludibacter propionicigenes WB4 chromosome [BACTEROIDETES] (CP002345) circular 3,685,504 38.9 3,040 2,957 9 53 3 18 genome

38 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Pantoea ananatis AJ13355 chromosome [PROTEOBACTERIA] (AP012032) circular 4,555,536 53.8 4,175 3,966 22 78 1 107 genome Pantoea ananatis AJ13355 plasmid pEA320 [PROTEOBACTERIA] (AP012033) circular 321,744 52.0 274 256 - - - 18 genome Pantoea ananatis LMG 20103 chromosome [PROTEOBACTERIA] (CP001875) circular 4,703,373 53.7 4,302 4,076 22 71 3 129 genome Pantoea ananatis LMG5342 chromosome [PROTEOBACTERIA] (HE617160) circular 4,605,545 53.4 4,262 4,092 22 77 1 69 genome Pantoea ananatis LMG5342 plasmid pPANA10e [PROTEOBACTERIA] (HE617161) circular 302,599 51.5 262 253 - - - 9 genome Pantoea ananatis PA13 chromosome [PROTEOBACTERIA] (CP003085) circular 4,586,378 53.7 4,304 4,159 22 83 1 38 genome Pantoea ananatis PA13 plasmid PAGR_p [PROTEOBACTERIA] (CP003086) circular 280,753 52.3 248 244 - - - 4 genome Pantoea sp. At-9b chromosome [PROTEOBACTERIA] (CP002433) circular 4,368,708 54.8 4,035 3,903 22 80 2 27 genome Pantoea sp. At-9b plasmid pPAT9B01 [PROTEOBACTERIA] (CP002434) circular 793,953 54.6 752 746 - - - 6 genome Pantoea sp. At-9b plasmid pPAT9B02 [PROTEOBACTERIA] (CP002435) circular 394,054 51.0 374 337 - 1 - 36 genome Pantoea sp. At-9b plasmid pPAT9B03 [PROTEOBACTERIA] (CP002436) circular 321,080 52.0 295 295 - - - - genome Pantoea sp. At-9b plasmid pPAT9B04 [PROTEOBACTERIA] (CP002437) circular 318,111 53.4 294 291 - - - 3 genome Pantoea sp. At-9b plasmid pPAT9B05 [PROTEOBACTERIA] (CP002438) circular 116,877 54.8 122 118 - - - 4 genome Pantoea vagans C9-1 chromosome [PROTEOBACTERIA] (CP002206) circular 4,024,986 55.5 3,719 3,556 22 77 1 63 genome Pantoea vagans C9-1 plasmid pPag1 [PROTEOBACTERIA] (CP001893) circular 167,983 53.0 139 135 - - - 4 genome Pantoea vagans C9-1 plasmid pPag2 [PROTEOBACTERIA] (CP001894) circular 165,693 51.1 163 139 - - - 23 genome Pantoea vagans C9-1 plasmid pPag3 [PROTEOBACTERIA] (CP001895) circular 529,676 53.9 488 472 - - - 16 genome Parabacteroides distasonis ATCC 8503 chromosome [BACTEROIDETES] (CP000140) circular 4,811,379 45.1 3,980 3,829 21 82 1 47 genome Parachlamydia acanthamoebae UV-7 chromosome [CHLAMYDIAE] (FR872580) circular 3,072,383 39.0 2,618 2,531 10 40 1 36 genome Paracoccus aminophilus plasmid pAMI2 [PROTEOBACTERIA] (GQ410978) circular 18,563 62.0 17 17 - - - - plasmid Paracoccus aminophilus plasmid pAMI3 [PROTEOBACTERIA] (GQ468939) circular 5,575 60.8 7 7 - - - - plasmid Paracoccus aminophilus plasmid pAMI7 [PROTEOBACTERIA] (GQ468938) circular 20,542 57.4 19 19 - - - - plasmid Paracoccus denitrificans PD1222 chromosome1 [PROTEOBACTERIA] (CP000489) circular 2,852,282 66.7 2,817 2,721 6 43 1 46 genome Paracoccus denitrificans PD1222 chromosome2 [PROTEOBACTERIA] (CP000490) circular 1,730,097 66.8 1,678 1,628 3 11 1 35 genome Paracoccus denitrificans PD1222 plasmid1 [PROTEOBACTERIA] (CP000491) circular 653,815 67.1 601 589 - - - 12 genome Paracoccus methylutens plasmid pMTH1 [PROTEOBACTERIA] (EU043115) circular 31,999 64.2 24 24 - - - - plasmid Parvibaculum lavamentivorans DS-1 chromosome [PROTEOBACTERIA] (CP000774) circular 3,914,745 62.3 3,710 3,613 3 45 3 46 genome Parvularcula bermudensis HTCC2503 chromosome [PROTEOBACTERIA] (CP002156) circular 2,902,643 60.7 2,687 2,601 3 43 1 39 genome Pasteurella multocida 36950 chromosome [PROTEOBACTERIA] (CP003022) circular 2,349,518 40.4 2,182 2,059 19 53 1 50 genome Pasteurella multocida multocida 3480 chromosome [PROTEOBACTERIA] (CP001409) circular 2,378,127 40.3 2,242 2,119 19 54 1 49 genome Pasteurella multocida multocida HN06 chromosome [PROTEOBACTERIA] (CP003313) circular 2,402,218 40.2 2,286 2,183 19 54 1 29 genome Pasteurella multocida multocida Pm70 chromosome [PROTEOBACTERIA] (AE004439) circular 2,257,487 40.4 2,090 2,008 19 56 1 6 genome Pasteurella multocida plasmid pCCK1900 [PROTEOBACTERIA] (FM179941) circular 10,226 60.7 9 9 - - - - plasmid Pasteurella multocida plasmid pCCK381 [PROTEOBACTERIA] (AJ871969) circular 10,874 60.7 6 5 - - - 1 plasmid Pasteurella multocida plasmid pCCK647 [PROTEOBACTERIA] (AJ884726) circular 5,198 42.7 5 5 - - - - plasmid Pasteurella multocida plasmid pJR1 [PROTEOBACTERIA] (AY232670) circular 6,792 45.7 6 6 - - - - plasmid Pasteurella multocida plasmid pJR2 [PROTEOBACTERIA] (AY232671) circular 5,252 41.8 5 5 - - - - plasmid Paulownia witches-broom phytoplasma plasmid pPaWBNy-1 [TENERICUTES] (EF426472) circular 4,485 24.8 6 6 - - - - plasmid Paulownia witches-broom phytoplasma plasmid pPaWBNy-2 [TENERICUTES] (EF426473) circular 3,837 25.9 5 5 - - - - plasmid Peanut witches-broom phytoplasma plasmid pPNWB [TENERICUTES] (AY270152) circular 4,226 27.0 4 4 - - - - plasmid Pectobacterium atrosepticum plasmid pECA1039 [PROTEOBACTERIA] (FJ176937) circular 5,620 45.8 12 9 - - 3 - plasmid Pectobacterium atrosepticum SCRI1043 chromosome [PROTEOBACTERIA] (BX950851) circular 5,064,019 51.0 4,462 4,300 22 77 2 61 genome Pectobacterium carotovorum carotovorum PC1 chromosome [PROTEOBACTERIA] (CP001657) circular 4,862,913 51.9 4,290 4,163 22 78 1 26 genome Pectobacterium carotovorum carotovorum PCC21 chromosome [PROTEOBACTERIA] (CP003776) circular 4,842,771 52.2 4,236 4,052 22 76 1 85 genome Pectobacterium wasabiae WPP163 chromosome [PROTEOBACTERIA] (CP001790) circular 5,063,892 50.5 4,518 4,356 22 75 2 63 genome Pediococcus acidilactici plasmid pEOC01 [FIRMICUTES] (DQ220741) circular 11,661 34.2 16 16 - - - - plasmid Pediococcus acidilactici plasmid pSMB74 [FIRMICUTES] (U02482) circular 8,971 36.4 9 9 - - - - plasmid Pediococcus claussenii ATCC BAA-344 chromosome [FIRMICUTES] (CP003137) circular 1,829,111 36.8 1,783 1,698 12 57 - 16 genome Pediococcus claussenii ATCC BAA-344 plasmid pPECL-3 [FIRMICUTES] (CP003140) circular 17,830 38.0 21 20 - - - 1 genome Pediococcus claussenii ATCC BAA-344 plasmid pPECL-4 [FIRMICUTES] (CP003141) circular 23,136 40.0 19 17 - - - 2 genome Pediococcus claussenii ATCC BAA-344 plasmid pPECL-5 [FIRMICUTES] (CP003142) circular 36,338 40.6 36 34 - - - 2 genome Pediococcus claussenii ATCC BAA-344 plasmid pPECL-6 [FIRMICUTES] (CP003143) linear 18,800 34.9 18 18 - - - - genome Pediococcus claussenii ATCC BAA-344 plasmid pPECL-7 [FIRMICUTES] (CP003144) linear 16,067 39.5 16 14 - - - 2 genome Pediococcus claussenii ATCC BAA-344 plasmid pPECL-8 [FIRMICUTES] (CP003145) linear 33,246 41.2 30 27 - - - 3 genome Pediococcus pentosaceus ATCC 25745 chromosome [FIRMICUTES] (CP000422) circular 1,832,387 37.4 1,795 1,707 15 55 - 17 genome Pediococcus pentosaceus plasmid pMD136 [FIRMICUTES] (AF033858) circular 19,515 34.1 24 24 - - - - plasmid Pediococcus pentosaceus plasmid pRS5 [FIRMICUTES] (FM163399) circular 10,153 34.9 9 9 - - - - plasmid Pedobacter heparinus DSM 2366 chromosome [BACTEROIDETES] (CP001681) circular 5,167,383 42.0 4,273 4,190 9 45 1 28 genome Pedobacter saltans DSM 12145 chromosome [BACTEROIDETES] (CP002545) circular 4,635,236 36.6 3,873 3,777 12 51 2 31 genome Pedobacter sp. BG5 plasmid pMWHK01 [BACTEROIDETES] (FJ613505) circular 6,206 34.8 8 8 - - - - plasmid Pelagibacterium halotolerans B2 chromosome [PROTEOBACTERIA] (CP003075) circular 3,944,837 61.4 3,847 3,749 6 47 1 44 genome Pelobacter carbinolicus DSM 2380 chromosome [PROTEOBACTERIA] (CP000142) circular 3,665,893 55.1 3,386 3,167 6 54 113 46 genome Pelobacter propionicus DSM 2379 chromosome [PROTEOBACTERIA] (CP000482) circular 4,008,000 59.0 3,598 3,481 12 53 2 50 genome Pelobacter propionicus DSM 2379 plasmid pPRO1 [PROTEOBACTERIA] (CP000483) circular 202,397 48.1 197 196 - - - 1 genome Pelobacter propionicus DSM 2379 plasmid pPRO2 [PROTEOBACTERIA] (CP000484) circular 30,722 56.3 32 32 - - - - genome Pelodictyon phaeoclathratiforme BU-1 chromosome [CHLOROBI] (CP001110) circular 3,018,238 48.1 2,877 2,736 9 49 1 82 genome Pelotomaculum thermopropionicum SI chromosome [FIRMICUTES] (AP009389) circular 3,025,375 53.0 2,999 2,853 6 50 1 89 genome Peptoclostridium difficile 630 chromosome [FIRMICUTES] (AM180355) circular 4,290,252 29.1 3,971 3,756 32 87 64 96 genome Peptoclostridium difficile BI1 chromosome [FIRMICUTES] (FN668941) circular 4,118,573 28.6 3,690 3,591 32 76 - - genome Peptoclostridium difficile BI1 plasmid pCDBI1 [FIRMICUTES] (FN668942) circular 45,258 28.0 64 64 - - - - genome Peptoclostridium difficile BI1 putative phage or plasmid [FIRMICUTES] (FN668943) circular 300,869 25.0 281 279 - 2 - - genome Peptoclostridium difficile CD196 chromosome [FIRMICUTES] (FN538970) circular 4,110,554 28.6 3,759 3,605 29 83 1 41 genome Peptoclostridium difficile R20291 chromosome [FIRMICUTES] (FN545816) circular 4,191,339 28.8 3,570 3,508 27 - - 35 genome Persephonella marina EX-H1 chromosome [AQUIFICAE] (CP001230) circular 1,930,284 37.2 2,012 1,956 6 40 1 9 genome Persephonella marina EX-H1 plasmid unnamed [AQUIFICAE] (CP001231) circular 53,682 34.4 66 66 - - - - genome Petrotoga mobilis SJ95 chromosome [THERMOTOGAE] (CP000879) circular 2,169,548 34.1 2,014 1,937 6 48 2 21 genome Phaeobacter gallaeciensis 2.10 chromosome [PROTEOBACTERIA] (CP002972) circular 3,758,274 59.8 3,561 3,478 12 56 1 14 genome Phaeobacter gallaeciensis 2.10 plasmid pPGA2_239 [PROTEOBACTERIA] (CP002973) linear 237,766 58.4 215 212 - 1 - 2 genome Phaeobacter gallaeciensis 2.10 plasmid pPGA2_71 [PROTEOBACTERIA] (CP002975) linear 70,384 62.8 50 48 - - - 2 genome Phaeobacter gallaeciensis 2.10 plasmid pPGA2_95 [PROTEOBACTERIA] (CP002974) linear 94,494 61.1 72 71 - - - 1 genome Phaeobacter inhibens DSM 17395 chromosome [PROTEOBACTERIA] (CP002976) circular 3,821,831 59.8 3,621 3,530 12 56 1 22 genome Phaeobacter inhibens DSM 17395 plasmid pPGA1_262 [PROTEOBACTERIA] (CP002977) circular 261,820 58.0 233 230 - 1 - 2 genome Phaeobacter inhibens DSM 17395 plasmid pPGA1_65 [PROTEOBACTERIA] (CP002979) circular 65,245 62.7 49 49 - - - - genome Phaeobacter inhibens DSM 17395 plasmid pPGA1_78 [PROTEOBACTERIA] (CP002978) circular 78,238 62.7 62 62 - - - - genome Phenylobacterium zucineum HLK1 chromosome [PROTEOBACTERIA] (CP000747) circular 3,996,255 71.3 3,898 3,808 3 42 1 44 genome Phenylobacterium zucineum HLK1 plasmid unnamed [PROTEOBACTERIA] (CP000748) circular 382,976 68.5 366 351 - - - 15 genome Photobacterium damselae damselae plasmid pAQU1 [PROTEOBACTERIA] (AB571865) circular 204,052 43.2 234 234 - - - - plasmid

39 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Photobacterium damselae damselae plasmid pPHDD1 [PROTEOBACTERIA] (FN597600) circular 153,429 37.9 172 172 - - - - plasmid Photobacterium damselae piscicida plasmid pP9014 [PROTEOBACTERIA] (AB453229) circular 55,851 44.4 61 61 - - - - plasmid Photobacterium damselae piscicida plasmid pP91278 [PROTEOBACTERIA] (AB277724) circular 131,520 51.7 161 161 - - - - plasmid Photobacterium damselae piscicida plasmid pP99-018 [PROTEOBACTERIA] (AB277723) circular 150,157 51.4 187 187 - - - - plasmid Photobacterium damselae piscicida plasmid pPHDP10 [PROTEOBACTERIA] (DQ069059) circular 9,631 39.2 8 8 - - - - plasmid Photobacterium profundum SS9 chromosome1 [PROTEOBACTERIA] (CR354531) circular 4,085,304 42.0 3,659 3,390 45 150 1 73 genome Photobacterium profundum SS9 chromosome2 [PROTEOBACTERIA] (CR354532) circular 2,237,943 41.2 2,068 1,935 4 19 - 110 genome Photobacterium profundum SS9 plasmid pPBPR1 [PROTEOBACTERIA] (CR377818) circular 80,033 44.0 73 72 - - - 1 genome Photorhabdus asymbiotica chromosome [PROTEOBACTERIA] (FM162591) circular 5,064,808 42.2 4,368 4,153 22 87 1 105 genome Photorhabdus asymbiotica plasmid pPAT [PROTEOBACTERIA] (FM162592) circular 29,330 40.5 29 28 - - - 1 genome Photorhabdus luminescens laumondii TTO1 chromosome [PROTEOBACTERIA] (BX470251) circular 5,688,987 42.8 4,863 4,620 22 84 1 135 genome Phycisphaera mikurensis NBRC 102666 chromosome [PLANCTOMYCETES] (AP012338) circular 3,803,225 73.3 3,063 2,955 3 46 2 57 genome Phycisphaera mikurensis NBRC 102666 plasmid pPSMK1 [PLANCTOMYCETES] (AP012339) circular 81,157 70.0 71 70 - - - 1 genome Pirellula staleyi DSM 6068 chromosome [PLANCTOMYCETES] (CP001848) circular 6,196,199 57.5 4,680 4,548 3 44 2 83 genome Planctomyces limnophilus DSM 3776 chromosome [PLANCTOMYCETES] (CP001744) circular 5,423,075 53.7 4,343 4,204 4 58 3 74 genome Planctomyces limnophilus DSM3776 plasmid pPLIM01 [PLANCTOMYCETES] (CP001745) circular 37,010 57.0 54 53 - 1 - - genome Planococcus sp. ZOYM plasmid pPCZ1 [FIRMICUTES] (DQ438984) circular 4,738 37.1 3 3 - - - - plasmid Planococcus sp. ZOYM plasmid pPCZ2 [FIRMICUTES] (DQ438985) circular 7,975 36.6 8 8 - - - - plasmid Polaromonas naphthalenivorans CJ2 chromosome [PROTEOBACTERIA] (CP000529) circular 4,410,291 62.5 4,105 3,983 6 48 3 65 genome Polaromonas naphthalenivorans CJ2 plasmid pPNAP01 [PROTEOBACTERIA] (CP000530) circular 353,291 57.5 305 298 - - - 7 genome Polaromonas naphthalenivorans CJ2 plasmid pPNAP02 [PROTEOBACTERIA] (CP000531) circular 190,172 58.0 165 155 - 2 - 8 genome Polaromonas naphthalenivorans CJ2 plasmid pPNAP03 [PROTEOBACTERIA] (CP000532) circular 171,866 56.9 153 145 - 1 - 7 genome Polaromonas naphthalenivorans CJ2 plasmid pPNAP04 [PROTEOBACTERIA] (CP000533) circular 143,747 59.0 142 125 - 1 - 16 genome Polaromonas naphthalenivorans CJ2 plasmid pPNAP05 [PROTEOBACTERIA] (CP000534) circular 58,808 59.6 50 47 - - - 3 genome Polaromonas naphthalenivorans CJ2 plasmid pPNAP06 [PROTEOBACTERIA] (CP000535) circular 21,611 55.7 17 16 - - - 1 genome Polaromonas naphthalenivorans CJ2 plasmid pPNAP07 [PROTEOBACTERIA] (CP000536) circular 9,898 57.1 13 13 - - - - genome Polaromonas naphthalenivorans CJ2 plasmid pPNAP08 [PROTEOBACTERIA] (CP000537) circular 6,459 52.1 7 7 - - - - genome Polaromonas sp. JS666 chromosome [PROTEOBACTERIA] (CP000316) circular 5,200,264 62.5 4,911 4,781 3 45 3 79 genome Polaromonas sp. JS666 plasmid 1 [PROTEOBACTERIA] (CP000317) circular 360,405 56.9 338 331 - - - 7 genome Polaromonas sp. JS666 plasmid 2 [PROTEOBACTERIA] (CP000318) circular 338,007 59.7 320 310 - - - 10 genome Polymorphum gilvum SL003B-26A1 chromosome [PROTEOBACTERIA] (CP002568) circular 4,649,365 67.2 4,362 4,260 6 50 1 45 genome Polymorphum gilvum SL003B-26A1 plasmid pSL003B [PROTEOBACTERIA] (CP002569) circular 69,598 61.6 62 58 - - - 4 genome Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1 chromosome [PROTEOBACTERIA] (CP000655) circular 2,159,490 44.8 2,161 2,111 3 38 1 8 genome Polynucleobacter necessarius necessarius STIR1 chromosome [PROTEOBACTERIA] (CP001010) circular 1,560,469 45.6 1,712 1,401 3 37 2 269 genome Porphyromonas asaccharolytica DSM 20707 chromosome [BACTEROIDETES] (CP002689) circular 2,186,370 52.5 1,716 1,648 6 47 2 13 genome Porphyromonas gingivalis ATCC 33277 chromosome [BACTEROIDETES] (AP009380) circular 2,354,886 48.4 1,983 1,869 12 53 1 48 genome Porphyromonas gingivalis TDC60 chromosome [BACTEROIDETES] (AP012203) circular 2,339,898 48.3 1,972 1,869 12 53 1 37 genome Porphyromonas gingivalis W83 chromosome [BACTEROIDETES] (AE015924) circular 2,343,476 48.3 1,977 1,858 12 53 1 53 genome Prevotella denticola F0289 chromosome [BACTEROIDETES] (CP002589) circular 2,937,589 50.4 2,336 2,232 12 49 2 41 genome Prevotella intermedia 17 chromosome I [BACTEROIDETES] (CP003502) circular 579,647 44.8 477 436 3 12 - 26 genome Prevotella intermedia 17 chromosome II [BACTEROIDETES] (CP003503) circular 2,119,790 43.1 1,802 1,700 9 37 1 55 genome Prevotella melaninogenica ATCC 25845 chromosome I [BACTEROIDETES] (CP002122) circular 1,796,408 40.9 1,425 1,366 9 36 2 12 genome Prevotella melaninogenica ATCC 25845 chromosome II [BACTEROIDETES] (CP002123) circular 1,371,874 41.1 1,019 990 4 12 - 13 genome Prevotella ruminicola 23 chromosome [BACTEROIDETES] (CP002006) circular 3,619,559 47.7 3,012 2,901 12 53 1 45 genome Prochlorococcus marinus AS9601 chromosome [CYANOBACTERIA] (CP000551) circular 1,669,886 31.3 1,822 1,769 3 39 3 8 genome Prochlorococcus marinus marinus CCMP1375 chromosome [CYANOBACTERIA] (AE017126) circular 1,751,080 36.4 1,930 1,882 3 40 3 1 genome Prochlorococcus marinus MIT 9211 chromosome [CYANOBACTERIA] (CP000878) circular 1,688,963 38.0 1,806 1,748 3 40 2 13 genome Prochlorococcus marinus MIT 9215 chromosome [CYANOBACTERIA] (CP000825) circular 1,738,790 31.1 1,899 1,840 3 39 4 13 genome Prochlorococcus marinus MIT 9301 chromosome [CYANOBACTERIA] (CP000576) circular 1,641,879 31.3 1,819 1,774 3 37 3 2 genome Prochlorococcus marinus MIT 9303 chromosome [CYANOBACTERIA] (CP000554) circular 2,682,675 50.0 3,136 2,997 6 43 3 78 genome Prochlorococcus marinus MIT 9312 chromosome [CYANOBACTERIA] (CP000111) circular 1,709,204 31.2 1,864 1,815 3 37 3 6 genome Prochlorococcus marinus MIT 9313 chromosome [CYANOBACTERIA] (BX548175) circular 2,410,873 50.7 2,426 2,339 6 44 4 33 genome Prochlorococcus marinus MIT 9515 chromosome [CYANOBACTERIA] (CP000552) circular 1,704,176 30.8 1,835 1,784 3 37 3 8 genome Prochlorococcus marinus NATL1A chromosome [CYANOBACTERIA] (CP000553) circular 1,864,731 35.0 2,010 1,954 3 38 3 12 genome Prochlorococcus marinus NATL2A chromosome [CYANOBACTERIA] (CP000095) circular 1,842,899 35.1 1,981 1,930 3 38 3 7 genome Prochlorococcus marinus pastoris CCMP1986 chromosome [CYANOBACTERIA] (BX548174) circular 1,657,990 30.8 1,830 1,777 3 37 4 9 genome Propionibacterium acidipropionici ATCC 4875 chromosome [ACTINOBACTERIA] (CP003493) circular 3,656,170 68.8 3,335 3,164 12 53 1 105 genome Propionibacterium acidipropionici plasmid pRGO1 [ACTINOBACTERIA] (AB007909) circular 6,868 65.3 6 6 - - - - plasmid Propionibacterium acnes 266 chromosome [ACTINOBACTERIA] (CP002409) circular 2,494,578 60.0 2,332 2,250 9 45 1 27 genome Propionibacterium acnes 6609 chromosome [ACTINOBACTERIA] (CP002815) circular 2,560,282 60.0 2,378 2,282 9 45 1 41 genome Propionibacterium acnes ATCC 11828 chromosome [ACTINOBACTERIA] (CP003084) circular 2,488,626 60.0 2,318 2,198 5 45 1 68 genome Propionibacterium acnes C1 chromosome [ACTINOBACTERIA] (CP003877) circular 2,519,002 60.1 2,377 2,276 9 45 1 46 genome Propionibacterium acnes KPA171202 chromosome [ACTINOBACTERIA] (AE017283) circular 2,560,265 60.0 2,371 2,277 9 45 1 39 genome Propionibacterium acnes SK137 chromosome [ACTINOBACTERIA] (CP001977) circular 2,495,334 60.1 2,353 2,278 9 45 2 19 genome Propionibacterium acnes TypeIA2 P.acn17 chromosome [ACTINOBACTERIA] (CP003196) circular 2,522,885 60.1 2,354 2,274 9 45 1 25 genome Propionibacterium acnes TypeIA2 P.acn31 chromosome [ACTINOBACTERIA] (CP003197) circular 2,498,766 60.0 2,324 2,246 9 45 1 23 genome Propionibacterium acnes TypeIA2 P.acn33 chromosome [ACTINOBACTERIA] (CP003195) circular 2,489,623 60.0 2,327 2,241 9 45 1 31 genome Propionibacterium freudenreichii plasmid p545 [ACTINOBACTERIA] (AF291751) circular 3,555 62.8 2 2 - - - - plasmid Propionibacterium freudenreichii plasmid pLME108 [ACTINOBACTERIA] (AJ006662) circular 2,051 63.7 1 1 - - - - plasmid Propionibacterium freudenreichii shermanii CIRM-BIA1 chromosome [ACTINOBACTERIA] (FN806773) circular 2,616,384 67.3 2,313 2,147 6 44 1 115 genome Propionibacterium granulosum cryptic plasmid pPG01 [ACTINOBACTERIA] (AY150274) circular 3,539 57.4 3 3 - - - - plasmid Propionibacterium jensenii plasmid pLME106 [ACTINOBACTERIA] (AJ250233) circular 6,868 65.3 10 10 - - - - plasmid Propionibacterium propionicum F0230a chromosome [ACTINOBACTERIA] (CP002734) circular 3,449,360 66.1 3,063 2,967 6 47 2 41 genome Prosthecochloris aestuarii DSM 271 chromosome [CHLOROBI] (CP001108) circular 2,512,923 50.1 2,325 2,240 3 46 1 35 genome Prosthecochloris aestuarii DSM 271 plasmid pPAES01 [CHLOROBI] (CP001109) circular 66,772 50.5 64 62 - - - 2 genome Proteus mirabilis HI4320 chromosome [PROTEOBACTERIA] (AM942759) circular 4,063,606 38.9 3,702 3,554 22 83 1 42 genome Proteus mirabilis HI4320 plasmid pHI4320 [PROTEOBACTERIA] (AM942760) circular 36,289 36.2 45 45 - - - - genome Proteus vulgaris plasmid pPvu1 [PROTEOBACTERIA] (AF305615) circular 4,675 42.9 11 10 - - - - plasmid Proteus vulgaris plasmid Rts1 [PROTEOBACTERIA] (AP004237) circular 217,182 45.7 300 300 - - - - plasmid Providencia rettgeri plasmid R7K [PROTEOBACTERIA] (AM901564) circular 39,792 56.7 43 40 - - - 3 plasmid Providencia stuartii MRSN 2154 chromosome [PROTEOBACTERIA] (CP003488) circular 4,402,109 41.3 4,128 3,865 22 75 1 165 genome Providencia stuartii plasmid pMR0211 [PROTEOBACTERIA] (JN687470) circular 178,277 51.4 148 148 - - - - plasmid Pseudoalteromonas atlantica T6c chromosome [PROTEOBACTERIA] (CP000388) circular 5,187,005 44.6 4,420 4,297 15 62 2 43 genome Pseudoalteromonas haloplanktis TAC125 chromosomeI [PROTEOBACTERIA] (CR954246) circular 3,214,944 40.2 2,962 2,811 28 106 1 16 genome Pseudoalteromonas haloplanktis TAC125 chromosomeII [PROTEOBACTERIA] (CR954247) circular 635,328 39.4 538 535 - - - 3 genome Pseudoalteromonas sp. 643A plasmid pKW1 [PROTEOBACTERIA] (EU636993) circular 4,583 43.2 7 7 - - - - plasmid Pseudoalteromonas sp. PS1M3 plasmid pPS1M3 [PROTEOBACTERIA] (AB022096) circular 3,138 37.1 1 1 - - - - plasmid

40 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Pseudoalteromonas sp. SANK 73390 plasmid pTML1 [PROTEOBACTERIA] (FN689524) circular 97,600 43.1 45 45 - - - - plasmid Pseudoalteromonas sp. SM9913 chromosomeI [PROTEOBACTERIA] (CP001796) circular 3,332,787 40.4 3,056 2,935 25 62 1 33 genome Pseudoalteromonas sp. SM9913 chromosomeII [PROTEOBACTERIA] (CP001797) circular 704,884 39.8 596 587 - - - 9 genome Pseudogulbenkiania sp. NH8B chromosome [PROTEOBACTERIA] (AP012224) circular 4,332,995 64.4 3,998 3,870 24 88 1 15 genome Pseudomonas aeruginosa DK2 chromosome [PROTEOBACTERIA] (CP003149) circular 6,402,658 66.3 5,919 5,788 12 63 1 55 genome Pseudomonas aeruginosa LESB58 chromosome [PROTEOBACTERIA] (FM209186) circular 6,601,757 66.3 6,125 6,005 12 67 5 36 genome Pseudomonas aeruginosa M18 chromosome [PROTEOBACTERIA] (CP002496) circular 6,327,754 66.5 5,820 5,717 12 63 1 27 genome Pseudomonas aeruginosa NCGM2.S1 chromosome [PROTEOBACTERIA] (AP012280) circular 6,764,661 66.1 6,274 6,140 12 67 1 54 genome Pseudomonas aeruginosa PA7 chromosome [PROTEOBACTERIA] (CP000744) circular 6,588,339 66.4 6,070 5,932 12 64 1 61 genome Pseudomonas aeruginosa PAO1 chromosome [PROTEOBACTERIA] (AE004091) circular 6,264,404 66.6 5,697 5,572 13 63 30 19 genome Pseudomonas aeruginosa plasmid pBS228 [PROTEOBACTERIA] (AM261760) circular 89,147 59.0 99 97 - - - 2 plasmid Pseudomonas aeruginosa plasmid pMATVIM-7 [PROTEOBACTERIA] (AM778842) circular 24,179 63.8 29 29 - - - - plasmid Pseudomonas aeruginosa plasmid Rms149 [PROTEOBACTERIA] (AJ877225) circular 57,121 59.5 52 51 - - - 1 plasmid Pseudomonas aeruginosa UCBPP-PA14 chromosome [PROTEOBACTERIA] (CP000438) circular 6,537,648 66.3 5,976 5,873 12 62 1 28 genome Pseudomonas alcaligenes plasmid pRA2 [PROTEOBACTERIA] (U88088) circular 32,743 59.8 29 29 - - - - plasmid Pseudomonas brassicacearum brassicacearum NFM421 chromosome [PROTEOBACTERIA] (CP002585) circular 6,843,248 60.8 6,047 5,916 16 65 1 49 genome Pseudomonas entomophila L48 chromosome [PROTEOBACTERIA] (CT573326) circular 5,888,780 64.2 5,138 5,003 22 78 1 34 genome Pseudomonas fluorescens A506 chromosome [PROTEOBACTERIA] (CP003041) circular 5,962,570 60.0 5,369 5,236 19 69 1 44 genome Pseudomonas fluorescens F113 chromosome [PROTEOBACTERIA] (CP003150) circular 6,845,832 60.8 6,034 5,898 16 66 2 52 genome Pseudomonas fluorescens Pf0-1 chromosome [PROTEOBACTERIA] (CP000094) circular 6,438,405 60.5 5,773 5,631 19 73 3 47 genome Pseudomonas fluorescens plasmid pNAH20 [PROTEOBACTERIA] (AY887963) circular 83,042 56.2 93 93 - - - - plasmid Pseudomonas fluorescens SBW25 chromosome [PROTEOBACTERIA] (AM181176) circular 6,722,539 60.5 6,034 5,900 16 66 1 51 genome Pseudomonas fluorescens SBW25 plasmid pQBR103 [PROTEOBACTERIA] (AM235768) circular 425,094 53.2 478 474 - - - 4 plasmid Pseudomonas fulva 12-X chromosome [PROTEOBACTERIA] (CP002727) circular 4,920,769 63.5 4,494 4,387 12 64 2 29 genome Pseudomonas fulva plasmid pNI10 [PROTEOBACTERIA] (AB084167) linear 5,128 52.4 1 1 - - - - plasmid Pseudomonas mendocina NK-01 chromosome [PROTEOBACTERIA] (CP002620) circular 5,434,353 62.5 5,039 4,940 12 66 1 20 genome Pseudomonas mendocina ymp chromosome [PROTEOBACTERIA] (CP000680) circular 5,072,807 64.7 4,658 4,547 12 67 2 30 genome Pseudomonas protegens Pf-5 chromosome [PROTEOBACTERIA] (CP000076) circular 7,074,893 63.3 6,308 6,179 16 70 2 41 genome Pseudomonas putida BIRD-1 chromosome [PROTEOBACTERIA] (CP002290) circular 5,731,541 61.7 5,163 5,021 22 65 1 54 genome Pseudomonas putida DOT-T1E chromosome [PROTEOBACTERIA] (CP003734) circular 6,260,702 61.4 17 5,721 7 58 - 5,803 genome Pseudomonas putida DOT-T1E plasmid pGRT1 [PROTEOBACTERIA] (HM626202) circular 133,451 55.8 125 125 - - - - plasmid Pseudomonas putida F1 chromosome [PROTEOBACTERIA] (CP000712) circular 5,959,964 61.9 5,331 5,207 19 76 3 26 genome Pseudomonas putida GB-1 chromosome [PROTEOBACTERIA] (CP000926) circular 6,078,430 61.9 5,490 5,356 22 75 4 33 genome Pseudomonas putida KT2440 chromosome [PROTEOBACTERIA] (AE015451) circular 6,181,863 61.5 5,516 5,350 22 74 - - genome Pseudomonas putida ND6 chromosome [PROTEOBACTERIA] (CP003588) circular 6,085,449 61.8 5,458 5,305 19 76 1 57 genome Pseudomonas putida ND6 plasmid pND6-1 [PROTEOBACTERIA] (AY208917) circular 101,858 57.0 102 102 - - - - genome Pseudomonas putida ND6 plasmid pND6-2 [PROTEOBACTERIA] (CP003589) linear 117,003 57.8 122 121 - - - 1 genome Pseudomonas putida plasmid NAH7 [PROTEOBACTERIA] (AB237655) circular 82,232 55.8 84 84 - - - - plasmid Pseudomonas putida plasmid pCAR1.2 [PROTEOBACTERIA] (AB474758) circular 200,231 56.3 199 199 - - - - plasmid Pseudomonas putida plasmid pDK1 [PROTEOBACTERIA] (AB434906) circular 128,921 56.0 112 112 - - - - plasmid Pseudomonas putida plasmid pDTG1 [PROTEOBACTERIA] (AF491307) circular 83,042 56.2 90 90 - - - - plasmid Pseudomonas putida plasmid pPP81 [PROTEOBACTERIA] (AJ289784) circular 2,534 58.6 4 4 - - - - plasmid Pseudomonas putida plasmid pW2 [PROTEOBACTERIA] (FJ948173) circular 76,494 62.1 70 70 - - - - plasmid Pseudomonas putida plasmid pWW0 [PROTEOBACTERIA] (AJ344068) circular 116,580 58.6 150 139 - - - - plasmid Pseudomonas putida plasmid pWW53 [PROTEOBACTERIA] (AB238971) circular 107,929 57.2 87 86 - - - - plasmid Pseudomonas putida plasmid pYQ39 [PROTEOBACTERIA] (AF273219) circular 2,297 58.7 3 3 - - - - plasmid Pseudomonas putida S16 chromosome [PROTEOBACTERIA] (CP002870) circular 5,984,790 62.3 5,437 5,243 19 67 1 107 genome Pseudomonas putida W619 chromosome [PROTEOBACTERIA] (CP000949) circular 5,774,330 61.4 5,279 5,147 22 75 2 33 genome Pseudomonas resinovorans plasmid pCAR1 [PROTEOBACTERIA] (AB088420) circular 199,035 56.3 198 198 - - - - plasmid Pseudomonas savastanoi pv. phaseolicola 1448A chromosome [PROTEOBACTERIA] (CP000058) circular 5,928,787 58.0 5,296 4,953 16 64 2 260 genome Pseudomonas savastanoi pv. phaseolicola 1448A large plasmid [PROTEOBACTERIA] (CP000059) circular 131,950 54.1 132 101 - - - 31 genome Pseudomonas savastanoi pv. phaseolicola 1448A small plasmid [PROTEOBACTERIA] (CP000060) circular 51,711 56.0 63 62 - - - 1 genome Pseudomonas sp. ADP plasmid pADP-1 [PROTEOBACTERIA] (U66917) circular 108,845 62.6 104 104 - - - - plasmid Pseudomonas sp. CT14 plasmid pCT14 [PROTEOBACTERIA] (DQ126685) circular 55,216 61.7 52 50 - - - - plasmid Pseudomonas sp. MC1 plasmid KOPRI126573 [PROTEOBACTERIA] (JN248563) circular 81,814 55.8 83 83 - - - - plasmid Pseudomonas sp. S-47 plasmid p47L [PROTEOBACTERIA] (AY951984) circular 3,084 63.6 3 3 - - - - plasmid Pseudomonas sp. SLT2001 plasmid pQBR55 [PROTEOBACTERIA] (AJ421512) linear 5,924 53.6 6 6 - - - - plasmid Pseudomonas stutzeri A1501 chromosome [PROTEOBACTERIA] (CP000304) circular 4,567,418 63.9 4,192 4,066 12 60 1 52 genome Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome [PROTEOBACTERIA] (CP002881) circular 4,547,930 63.9 4,173 4,021 12 59 1 79 genome Pseudomonas stutzeri CCUG 29243 chromosome [PROTEOBACTERIA] (CP003677) circular 4,709,064 62.7 4,356 4,218 12 62 1 62 genome Pseudomonas stutzeri DSM 10701 chromosome [PROTEOBACTERIA] (CP003725) circular 4,174,118 63.2 3,869 3,742 12 61 1 53 genome Pseudomonas stutzeri DSM 4166 chromosome [PROTEOBACTERIA] (CP002622) circular 4,689,946 64.0 4,350 4,219 12 60 1 57 genome Pseudomonas syringae pv. maculicola M6 plasmid pFKN [PROTEOBACTERIA] (AF359557) circular 39,554 53.5 29 26 - - - 3 plasmid Pseudomonas syringae pv. maculicola plasmid pPMA4326A [PROTEOBACTERIA] (AY603979) circular 46,697 55.0 53 50 - - - 3 plasmid Pseudomonas syringae pv. maculicola plasmid pPMA4326B [PROTEOBACTERIA] (AY603980) circular 40,110 55.3 39 29 - - - 10 plasmid Pseudomonas syringae pv. maculicola plasmid pPMA4326C [PROTEOBACTERIA] (AY603982) circular 8,244 52.9 10 10 - - - - plasmid Pseudomonas syringae pv. syringae B728a chromosome [PROTEOBACTERIA] (CP000075) circular 6,093,698 59.2 5,220 5,089 16 64 3 47 genome Pseudomonas syringae pv. syringae plasmid pPSR1 [PROTEOBACTERIA] (AY342395) circular 72,601 54.4 55 55 - - - - plasmid Pseudomonas syringae pv. tomato DC3000 chromosome [PROTEOBACTERIA] (AE016853) circular 6,397,126 58.4 5,692 5,481 15 63 29 8 genome Pseudomonas syringae pv. tomato DC3000 pDC3000A [PROTEOBACTERIA] (AE016855) circular 73,661 55.1 73 68 - - - - genome Pseudomonas syringae pv. tomato DC3000 pDC3000B [PROTEOBACTERIA] (AE016854) circular 67,473 56.2 77 70 - - - - genome Pseudonocardia autotrophica plasmid pPA43082 [ACTINOBACTERIA] (AB600171) circular 8,047 67.8 4 4 - - - - plasmid Pseudonocardia dioxanivorans CB1190 chromosome [ACTINOBACTERIA] (CP002593) circular 7,096,571 73.3 6,649 6,417 9 46 2 175 genome Pseudonocardia dioxanivorans CB1190 plasmid pPSED01 [ACTINOBACTERIA] (CP002594) circular 192,355 70.7 185 173 - - - 12 genome Pseudonocardia dioxanivorans CB1190 plasmid pPSED02 [ACTINOBACTERIA] (CP002597) linear 66,907 66.8 55 55 - - - - genome Pseudonocardia dioxanivorans CB1190 plasmid pPSED03 [ACTINOBACTERIA] (CP002598) circular 15,063 61.8 10 10 - - - - genome Pseudovibrio sp. FO-BEG1 chromosome [PROTEOBACTERIA] (CP003147) circular 5,475,670 52.4 4,937 4,821 18 69 1 28 genome Pseudovibrio sp. FO-BEG1 plasmid unnamed [PROTEOBACTERIA] (CP003148) circular 441,112 52.6 378 378 - - - - genome Pseudoxanthomonas spadix BD-a59 chromosome [PROTEOBACTERIA] (CP003093) circular 3,452,554 67.7 3,104 2,994 3 50 1 56 genome Pseudoxanthomonas suwonensis 11-1 chromosome [PROTEOBACTERIA] (CP002446) circular 3,419,049 70.2 3,109 3,023 6 52 2 26 genome Psychrobacter arcticus 273-4 chromosome [PROTEOBACTERIA] (CP000082) circular 2,650,701 42.8 2,231 2,130 12 49 3 37 genome Psychrobacter cryohalolentis K5 chromosome [PROTEOBACTERIA] (CP000323) circular 3,059,876 42.3 2,544 2,468 12 48 3 13 genome Psychrobacter cryohalolentis K5 plasmid1 [PROTEOBACTERIA] (CP000324) circular 41,221 38.3 44 42 - - - 2 genome Psychrobacter sp. PRwf-1 chromosome [PROTEOBACTERIA] (CP000713) circular 2,978,976 44.9 2,472 2,367 15 58 3 29 genome Psychrobacter sp. PRwf-1 plasmid pRWF101 [PROTEOBACTERIA] (CP000714) circular 13,956 38.3 16 16 - - - - genome Psychroflexus torquis ATCC 700755 chromosome [BACTEROIDETES] (CP003879) circular 4,321,832 34.5 3,698 3,546 9 37 1 105 genome Psychromonas ingrahamii 37 chromosome [PROTEOBACTERIA] (CP000510) circular 4,559,598 40.1 3,847 3,644 31 85 3 83 genome

41 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Pusillimonas sp. T7-7 chromosome [PROTEOBACTERIA] (CP002663) circular 3,883,605 56.9 3,603 3,504 6 47 1 44 genome Pusillimonas sp. T7-7 plasmid unnamed [PROTEOBACTERIA] (CP002664) circular 41,205 56.0 63 61 - - - 2 genome Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome [PROTEOBACTERIA] (CP003244) circular 4,861,101 52.1 4,398 4,259 22 76 2 38 genome Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201 [PROTEOBACTERIA] (CP003245) circular 463,906 52.3 408 398 - - 1 9 genome Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq202 [PROTEOBACTERIA] (CP003246) circular 115,487 50.7 107 104 - - - 3 genome Rahnella aquatilis HX2 chromosome [PROTEOBACTERIA] (CP003403) circular 4,962,173 52.2 4,493 4,325 22 76 1 68 genome Rahnella aquatilis HX2 plasmid PRA1 [PROTEOBACTERIA] (CP003404) circular 570,951 52.0 519 503 - - - 16 genome Rahnella aquatilis HX2 plasmid PRA2 [PROTEOBACTERIA] (CP003406) linear 75,160 48.7 70 66 - - - 4 genome Rahnella sp. Y9602 chromosome [PROTEOBACTERIA] (CP002505) circular 4,864,217 52.3 4,428 4,312 22 76 2 15 genome Rahnella sp. Y9602 plasmid pRAHAQ01 [PROTEOBACTERIA] (CP002506) circular 616,549 52.1 586 578 - - - 8 genome Rahnella sp. Y9602 plasmid pRAHAQ02 [PROTEOBACTERIA] (CP002507) circular 133,486 48.3 127 120 - - - 7 genome Ralstonia pickettii 12D chromosome1 [PROTEOBACTERIA] (CP001644) circular 3,647,724 63.6 3,464 3,368 6 51 2 37 genome Ralstonia pickettii 12D chromosome2 [PROTEOBACTERIA] (CP001645) circular 1,323,321 64.5 1,173 1,156 3 4 - 10 genome Ralstonia pickettii 12D plasmid pRp12D01 [PROTEOBACTERIA] (CP001646) circular 389,779 58.4 415 414 - - - 1 genome Ralstonia pickettii 12D plasmid pRp12D02 [PROTEOBACTERIA] (CP001647) circular 273,136 61.6 272 268 - - - 4 genome Ralstonia pickettii 12D plasmid pRp12D03 [PROTEOBACTERIA] (CP001648) circular 51,398 61.2 65 64 - - - 1 genome Ralstonia pickettii 12J chromosome1 [PROTEOBACTERIA] (CP001068) circular 3,942,557 63.4 3,723 3,617 6 52 3 45 genome Ralstonia pickettii 12J chromosome2 [PROTEOBACTERIA] (CP001069) circular 1,302,238 64.5 1,151 1,131 3 4 - 13 genome Ralstonia pickettii 12J plasmid pRPIC01 [PROTEOBACTERIA] (CP001070) circular 80,934 60.4 85 82 - - - 3 genome Ralstonia solanacearum CFBP2957 chromosome [PROTEOBACTERIA] (FP885897) circular 3,417,386 66.5 3,194 3,085 9 53 11 36 genome Ralstonia solanacearum GMI1000 chromosome [PROTEOBACTERIA] (AL646052) circular 3,716,413 67.0 3,429 3,316 9 54 1 49 genome Ralstonia solanacearum GMI1000 plasmid pGMI1000MP [PROTEOBACTERIA] (AL646053) circular 2,094,509 66.9 1,583 1,533 3 3 - 44 genome Ralstonia solanacearum Po82 chromosome [PROTEOBACTERIA] (CP002819) circular 3,481,091 66.6 3,214 3,101 9 53 1 50 genome Ralstonia solanacearum Po82 megaplasmid [PROTEOBACTERIA] (CP002820) circular 1,949,172 66.7 1,495 1,433 - 1 - 61 genome Ralstonia solanacearum PSI07 chromosome [PROTEOBACTERIA] (FP885906) circular 3,520,618 66.4 3,217 3,098 9 53 1 56 genome Ralstonia solanacearum PSI07 megaplasmid [PROTEOBACTERIA] (FP885891) circular 2,085,000 66.1 1,575 1,530 - 1 - 44 genome Ramlibacter tataouinensis TTB310 chromosome [PROTEOBACTERIA] (CP000245) circular 4,070,193 70.0 3,906 3,806 3 43 1 53 genome Rehmannia glutinosa phytoplasma plasmid pPARG1 [TENERICUTES] (FJ905104) circular 4,371 24.5 7 7 - - - - plasmid Renibacterium salmoninarum ATCC 33209 chromosome [ACTINOBACTERIA] (CP000910) circular 3,155,250 56.3 3,221 2,761 6 45 1 408 genome Rhizobium (Agrobacterium) radiobacter K84 chromosome1 [PROTEOBACTERIA] (CP000628) circular 4,005,130 60.3 3,883 3,791 9 52 3 28 genome Rhizobium (Agrobacterium) radiobacter K84 chromosome2 [PROTEOBACTERIA] (CP000629) circular 2,650,913 59.8 2,376 2,354 - - - 22 genome Rhizobium (Agrobacterium) radiobacter K84 plasmid pAgK84 [PROTEOBACTERIA] (CP000632) circular 44,420 53.5 39 39 - - - - genome Rhizobium (Agrobacterium) radiobacter K84 plasmid pAtK84b [PROTEOBACTERIA] (CP000630) circular 184,668 59.0 179 177 - - - 2 genome Rhizobium (Agrobacterium) radiobacter K84 plasmid pAtK84c [PROTEOBACTERIA] (CP000631) circular 388,169 57.0 354 338 - - - 16 genome Rhizobium etli CFN 42 chromosome [PROTEOBACTERIA] (CP000133) circular 4,381,608 61.3 4,219 4,076 9 50 1 83 genome Rhizobium etli CFN 42 plasmid p42a [PROTEOBACTERIA] (CP000134) circular 194,229 58.0 179 151 - - - 28 genome Rhizobium etli CFN 42 plasmid p42b [PROTEOBACTERIA] (CP000135) circular 184,338 61.8 171 168 - - - 3 genome Rhizobium etli CFN 42 plasmid p42c [PROTEOBACTERIA] (CP000136) circular 250,948 61.5 236 229 - - - 7 genome Rhizobium etli CFN 42 plasmid p42e [PROTEOBACTERIA] (CP000137) circular 505,334 61.7 478 469 - - - 9 genome Rhizobium etli CFN 42 plasmid p42f [PROTEOBACTERIA] (CP000138) circular 642,517 61.2 602 586 - - - 16 genome Rhizobium etli CFN 42 symbiotic plasmid p42d [PROTEOBACTERIA] (U80928) circular 371,254 57.8 350 322 - - - 28 genome Rhizobium etli CIAT 652 chromosome [PROTEOBACTERIA] (CP001074) circular 4,513,324 61.7 4,325 4,190 9 52 1 73 genome Rhizobium etli CIAT 652 plasmid pA [PROTEOBACTERIA] (CP001075) circular 414,090 62.2 385 379 - - - 6 genome Rhizobium etli CIAT 652 plasmid pB [PROTEOBACTERIA] (CP001076) circular 429,111 57.8 377 340 - - - 37 genome Rhizobium etli CIAT 652 plasmid pC [PROTEOBACTERIA] (CP001077) circular 1,091,523 60.9 976 946 - - - 30 genome Rhizobium leguminosarum bv. trifolii WSM1325 chromosome [PROTEOBACTERIA] (CP001622) circular 4,767,043 61.1 4,600 4,487 9 51 2 51 genome Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501 [PROTEOBACTERIA] (CP001623) circular 828,924 60.4 751 724 - - - 27 genome Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502 [PROTEOBACTERIA] (CP001624) circular 660,973 60.8 640 620 - - - 20 genome Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503 [PROTEOBACTERIA] (CP001625) circular 516,088 58.8 503 476 - - - 27 genome Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504 [PROTEOBACTERIA] (CP001626) circular 350,312 60.6 305 302 - - - 3 genome Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505 [PROTEOBACTERIA] (CP001627) circular 294,782 60.4 281 272 - - - 9 genome Rhizobium leguminosarum bv. trifolii WSM2304 chromosome [PROTEOBACTERIA] (CP001191) circular 4,537,948 61.5 4,387 4,287 9 51 2 38 genome Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201 [PROTEOBACTERIA] (CP001192) circular 1,266,105 60.4 1,199 1,163 - - - 36 genome Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202 [PROTEOBACTERIA] (CP001193) circular 501,946 62.0 455 452 - - - 3 genome Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203 [PROTEOBACTERIA] (CP001195) circular 308,747 57.9 269 262 - - - 7 genome Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG204 [PROTEOBACTERIA] (CP001194) circular 257,956 61.4 221 220 - - - 1 genome Rhizobium leguminosarum bv. viciae 3841 chromosome [PROTEOBACTERIA] (AM236080) circular 5,057,142 61.1 4,866 4,751 9 52 1 53 genome Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10 [PROTEOBACTERIA] (AM236084) circular 488,135 59.6 466 439 - - - 27 genome Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11 [PROTEOBACTERIA] (AM236085) circular 684,202 61.0 636 627 - - - 9 genome Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12 [PROTEOBACTERIA] (AM236086) circular 870,021 61.0 787 778 - - - 9 genome Rhizobium leguminosarum bv. viciae 3841 plasmid pRL7 [PROTEOBACTERIA] (AM236081) circular 151,564 57.6 154 133 - - - 21 genome Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8 [PROTEOBACTERIA] (AM236082) circular 147,463 58.7 140 135 - - - 5 genome Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9 [PROTEOBACTERIA] (AM236083) circular 352,782 61.0 308 299 - - - 9 genome Rhodobacter capsulatus SB 1003 chromosome1 [PROTEOBACTERIA] (CP001312) circular 3,738,958 66.6 3,492 3,367 12 52 2 59 genome Rhodobacter capsulatus SB 1003 plasmid pRCB133 [PROTEOBACTERIA] (CP001313) circular 132,962 66.5 142 134 - - - 8 genome Rhodobacter sphaeroides 2.4.1 chromosome1 [PROTEOBACTERIA] (CP000143) circular 3,188,524 69.0 3,144 3,040 3 42 4 55 genome Rhodobacter sphaeroides 2.4.1 chromosome2 [PROTEOBACTERIA] (CP000144) circular 943,018 69.0 901 845 6 12 - 38 genome Rhodobacter sphaeroides 2.4.1 plasmidA [PROTEOBACTERIA] (DQ232586) linear 114,045 69.3 90 87 - - - 3 genome Rhodobacter sphaeroides 2.4.1 plasmidB [PROTEOBACTERIA] (CP000145) circular 114,179 70.1 105 103 - - - 2 genome Rhodobacter sphaeroides 2.4.1 plasmidC [PROTEOBACTERIA] (CP000146) circular 105,284 63.8 90 82 - - - 8 genome Rhodobacter sphaeroides 2.4.1 plasmidD [PROTEOBACTERIA] (CP000147) circular 100,827 63.8 112 94 - - - 18 genome Rhodobacter sphaeroides ATCC 17025 chromosome [PROTEOBACTERIA] (CP000661) circular 3,217,726 68.5 3,203 3,085 3 41 3 71 genome Rhodobacter sphaeroides ATCC 17025 chromosome2/plasmid pRSPA01 [PROTEOBACTERIA] (CP000662) circular 877,879 67.0 849 802 2 17 - 30 genome Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02 [PROTEOBACTERIA] (CP000663) circular 289,489 67.6 269 243 3 3 - 20 genome Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03 [PROTEOBACTERIA] (CP000664) circular 121,962 69.4 113 111 - - - 2 genome Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA04 [PROTEOBACTERIA] (CP000665) circular 36,198 64.0 35 33 - - - 2 genome Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA05 [PROTEOBACTERIA] (CP000666) circular 13,873 58.9 14 14 - - - - genome Rhodobacter sphaeroides ATCC 17029 chromosome1 [PROTEOBACTERIA] (CP000577) circular 3,147,721 69.1 3,014 2,951 3 40 2 18 genome Rhodobacter sphaeroides ATCC 17029 chromosome2 [PROTEOBACTERIA] (CP000578) circular 1,219,053 68.6 1,086 1,040 9 16 - 21 genome Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01 [PROTEOBACTERIA] (CP000579) circular 122,606 69.6 108 106 - - - 2 genome Rhodobacter sphaeroides KD131 chromosome1 [PROTEOBACTERIA] (CP001150) circular 3,152,792 69.1 3,143 3,101 1 42 - - genome Rhodobacter sphaeroides KD131 chromosome2 [PROTEOBACTERIA] (CP001151) circular 1,297,647 68.0 1,248 1,224 3 24 - - genome Rhodobacter sphaeroides KD131 plasmid pRSKD131A [PROTEOBACTERIA] (CP001152) circular 157,345 70.1 141 138 - - - 3 genome Rhodobacter sphaeroides KD131 plasmid pRSKD131B [PROTEOBACTERIA] (CP001153) circular 103,355 69.8 93 89 - - - 4 genome Rhodobacter sphaeroides WS8N plasmid pWS8N_A [PROTEOBACTERIA] (CM001163) circular 110,310 70.5 100 96 - - - 4 plasmid Rhodobacter sphaeroides WS8N plasmid pWS8N_B [PROTEOBACTERIA] (CM001164) circular 199,892 68.8 186 175 - - - 11 plasmid Rhodococcus equi 103S chromosome [ACTINOBACTERIA] (FN563149) circular 5,043,170 68.8 4,614 4,522 12 52 1 27 genome

42 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Rhodococcus equi plasmid p103 [ACTINOBACTERIA] (AF116907) circular 80,609 64.6 64 64 - - - - plasmid Rhodococcus equi plasmid pREAT701 [ACTINOBACTERIA] (AP001204) circular 80,610 64.6 64 64 - - - - plasmid Rhodococcus equi plasmid pVAPA1037 [ACTINOBACTERIA] (AM947677) circular 80,610 64.6 73 65 - - - 8 plasmid Rhodococcus equi plasmid pVAPB1593 [ACTINOBACTERIA] (AM947676) circular 79,251 64.7 72 68 - - - 4 plasmid Rhodococcus erythropolis plasmid pBD2 [ACTINOBACTERIA] (AY223810) linear 210,205 62.2 212 212 - - - - plasmid Rhodococcus erythropolis plasmid pFAJ2600 [ACTINOBACTERIA] (AF015088) circular 5,936 60.8 8 8 - - - - plasmid Rhodococcus erythropolis plasmid pRE8424 [ACTINOBACTERIA] (AB127588) circular 5,987 54.7 6 6 - - - - plasmid Rhodococcus erythropolis PR4 chromosome [ACTINOBACTERIA] (AP008957) circular 6,516,310 62.3 6,043 5,914 15 54 5 55 genome Rhodococcus erythropolis PR4 plasmid pREC1 [ACTINOBACTERIA] (AP008932) circular 104,014 63.0 104 103 - - - 1 genome Rhodococcus erythropolis PR4 plasmid pREC2 [ACTINOBACTERIA] (AP008933) circular 3,637 62.2 5 5 - - - - genome Rhodococcus erythropolis PR4 plasmid pREL1 [ACTINOBACTERIA] (AP008931) linear 271,577 61.9 276 256 - - - 20 genome Rhodococcus jostii RHA1 chromosome [ACTINOBACTERIA] (CP000431) linear 7,804,765 67.5 7,102 6,873 12 50 2 165 genome Rhodococcus jostii RHA1 plasmid pRHL1 [ACTINOBACTERIA] (CP000432) linear 1,123,075 65.1 1,010 949 - 2 - 59 genome Rhodococcus jostii RHA1 plasmid pRHL2 [ACTINOBACTERIA] (CP000433) linear 442,536 64.0 408 371 - - - 37 genome Rhodococcus jostii RHA1 plasmid pRHL3 [ACTINOBACTERIA] (CP000434) linear 332,361 64.9 292 271 - - - 21 genome Rhodococcus opacus B4 chromosome [ACTINOBACTERIA] (AP011115) linear 7,913,450 67.9 7,182 6,959 12 50 1 160 genome Rhodococcus opacus B4 plasmid pKNR [ACTINOBACTERIA] (AP011118) circular 111,160 65.0 97 94 - - - 3 genome Rhodococcus opacus B4 plasmid pKNR01 [ACTINOBACTERIA] (AP011119) circular 4,367 64.5 7 7 - - - - genome Rhodococcus opacus B4 plasmid pROB01 [ACTINOBACTERIA] (AP011116) linear 558,192 65.8 548 526 - - - 22 genome Rhodococcus opacus B4 plasmid pROB02 [ACTINOBACTERIA] (AP011117) linear 244,997 64.2 211 196 - - - 15 genome Rhodococcus rhodochrous plasmid pNC500 [ACTINOBACTERIA] (AB266604) circular 7,637 65.7 8 8 - - - - plasmid Rhodococcus sp. B264-1 plasmid pB264 [ACTINOBACTERIA] (AY297818) circular 4,970 64.7 4 4 - - - - plasmid Rhodococcus sp. NS1 plasmid pNSL1 [ACTINOBACTERIA] (DQ888171) linear 117,252 65.4 103 103 - - - - plasmid Rhodoferax ferrireducens T118 chromosome [PROTEOBACTERIA] (CP000267) circular 4,712,337 59.9 4,295 4,179 6 45 3 62 genome Rhodoferax ferrireducens T118 plasmid 1 [PROTEOBACTERIA] (CP000268) circular 257,447 54.4 259 257 - 1 - 1 genome Rhodomicrobium vannielii ATCC 17100 chromosome [PROTEOBACTERIA] (CP002292) circular 4,014,469 62.2 3,703 3,552 6 49 2 94 genome Rhodopirellula baltica SH 1 chromosome [PLANCTOMYCETES] (BX119912) circular 7,145,586 55.4 7,404 7,325 3 76 1 - genome Rhodopseudomonas palustris BisA53 chromosome [PROTEOBACTERIA] (CP000463) circular 5,505,494 64.4 4,913 4,797 6 50 3 57 genome Rhodopseudomonas palustris BisB18 chromosome [PROTEOBACTERIA] (CP000301) circular 5,513,844 65.0 4,969 4,849 6 49 13 52 genome Rhodopseudomonas palustris BisB5 chromosome [PROTEOBACTERIA] (CP000283) circular 4,892,717 64.8 4,445 4,348 6 51 3 37 genome Rhodopseudomonas palustris CGA009 chromosome [PROTEOBACTERIA] (BX571963) circular 5,459,213 65.0 4,942 4,841 6 49 3 43 genome Rhodopseudomonas palustris CGA009 plasmid pRPA [PROTEOBACTERIA] (BX571964) circular 8,427 60.4 9 9 - - - - genome Rhodopseudomonas palustris DX-1 chromosome [PROTEOBACTERIA] (CP002418) circular 5,404,117 65.4 4,956 4,845 6 49 2 54 genome Rhodopseudomonas palustris HaA2 chromosome [PROTEOBACTERIA] (CP000250) circular 5,331,656 66.0 4,732 4,652 3 50 3 24 genome Rhodopseudomonas palustris plasmid pRPSZY [PROTEOBACTERIA] (DQ318958) circular 2,306 48.0 1 1 - - - - plasmid Rhodopseudomonas palustris TIE-1 chromosome [PROTEOBACTERIA] (CP001096) circular 5,744,041 64.9 5,276 5,164 6 52 3 51 genome Rhodospirillum centenum SW chromosome [PROTEOBACTERIA] (CP000613) circular 4,355,543 70.5 3,934 3,772 12 52 2 96 genome Rhodospirillum photometricum chromosome [PROTEOBACTERIA] (HE663493) circular 3,876,289 64.7 3,455 3,140 16 93 1 204 genome Rhodospirillum rubrum ATCC 11170 chromosome [PROTEOBACTERIA] (CP000230) circular 4,352,825 65.4 3,866 3,787 12 55 3 9 genome Rhodospirillum rubrum ATCC 11170 plasmid unnamed [PROTEOBACTERIA] (CP000231) circular 53,732 59.8 50 50 - - - - genome Rhodospirillum rubrum F11 chromosome [PROTEOBACTERIA] (CP003046) circular 4,352,825 65.4 3,886 3,802 12 55 1 16 genome Rhodothermus marinus DSM 4252 chromosome [BACTEROIDETES] (CP001807) circular 3,261,604 64.5 2,815 2,752 3 45 2 13 genome Rhodothermus marinus DSM 4252 plasmid pRMAR01 [BACTEROIDETES] (CP001808) circular 125,133 58.2 96 90 - - - 6 genome Rhodothermus marinus plasmid pRM21 [BACTEROIDETES] (U10426) circular 2,935 58.2 2 2 - - - - plasmid Rhodothermus marinus SG0.5JP17-172 chromosome [BACTEROIDETES] (CP003029) circular 3,225,536 64.4 2,838 2,763 3 46 2 24 genome Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201 [BACTEROIDETES] (CP003030) circular 105,449 59.5 88 87 - - - 1 genome Rickettsia africae ESF-5 chromosome [PROTEOBACTERIA] (CP001612) circular 1,278,540 32.4 1,397 1,219 3 33 3 139 genome Rickettsia africae ESF-5 plasmid pRAF [PROTEOBACTERIA] (CP001613) circular 12,377 33.5 11 10 - - - 1 genome Rickettsia akari Hartford chromosome [PROTEOBACTERIA] (CP000847) linear 1,231,060 32.3 1,202 980 3 33 1 185 genome Rickettsia australis Cutlack chromosome [PROTEOBACTERIA] (CP003338) circular 1,296,670 32.3 1,337 1,136 3 33 1 164 genome Rickettsia australis Cutlack plasmid pMC5_1 [PROTEOBACTERIA] (CP003339) circular 26,610 33.7 24 21 - - - 3 genome Rickettsia bellii OSU 85-389 chromosome [PROTEOBACTERIA] (CP000849) linear 1,528,980 31.6 1,507 1,376 3 34 1 93 genome Rickettsia bellii RML369-C chromosome [PROTEOBACTERIA] (CP000087) circular 1,522,076 31.6 1,486 1,372 3 34 4 73 genome Rickettsia canadensis CA410 chromosome [PROTEOBACTERIA] (CP003304) circular 1,150,228 31.0 971 875 3 33 1 59 genome Rickettsia canadensis McKiel chromosome [PROTEOBACTERIA] (CP000409) linear 1,159,772 31.1 1,002 902 3 33 1 63 genome Rickettsia conorii Malish 7 chromosome [PROTEOBACTERIA] (AE006914) circular 1,268,755 32.4 1,370 1,227 3 33 3 104 genome Rickettsia endosymbiont of Ixodes scapularis plasmid pREIS1 [PROTEOBACTERIA] (CM000771) circular 55,147 34.4 58 53 - - - 5 plasmid Rickettsia endosymbiont of Ixodes scapularis plasmid pREIS2 [PROTEOBACTERIA] (CM000772) circular 66,811 31.8 72 55 - - - 17 plasmid Rickettsia endosymbiont of Ixodes scapularis plasmid pREIS3 [PROTEOBACTERIA] (CM000773) linear 49,883 34.9 45 40 - - - 5 plasmid Rickettsia felis URRWXCal2 chromosome [PROTEOBACTERIA] (CP000053) circular 1,485,148 32.5 1,479 1,206 3 33 4 233 genome Rickettsia felis URRWXCal2 plasmid pRFdelta [PROTEOBACTERIA] (CP000055) circular 39,263 33.2 44 38 - - - 6 genome Rickettsia felis URRWXCal2 pRF [PROTEOBACTERIA] (CP000054) circular 62,829 33.6 69 58 - - - 11 genome Rickettsia heilongjiangensis 054 chromosome [PROTEOBACTERIA] (CP002912) circular 1,278,471 32.3 1,374 1,140 3 33 1 197 genome Rickettsia helvetica C9P9 plasmid pRhe [PROTEOBACTERIA] (CM001468) circular 47,188 32.6 49 44 - - - 5 plasmid Rickettsia japonica YH chromosome [PROTEOBACTERIA] (AP011533) circular 1,283,087 32.4 1,385 1,142 3 33 3 204 genome Rickettsia massiliae AZT80 chromosome [PROTEOBACTERIA] (CP003319) circular 1,263,719 32.6 1,338 1,074 3 33 1 227 genome Rickettsia massiliae AZT80 plasmid pRMB [PROTEOBACTERIA] (CP003320) circular 15,000 32.1 14 11 - - - 3 genome Rickettsia massiliae MTU5 chromosome [PROTEOBACTERIA] (CP000683) circular 1,360,898 32.5 1,468 1,141 3 33 4 287 genome Rickettsia massiliae MTU5 plasmid pRMA [PROTEOBACTERIA] (CP000684) circular 15,286 31.7 15 11 - - - 4 genome Rickettsia monacensis plasmid pRM [PROTEOBACTERIA] (EF564599) circular 23,486 31.8 23 17 - - - - plasmid Rickettsia montanensis OSU 85-930 chromosome [PROTEOBACTERIA] (CP003340) circular 1,279,798 32.6 1,374 1,125 3 33 1 212 genome Rickettsia parkeri Portsmouth chromosome [PROTEOBACTERIA] (CP003341) circular 1,300,386 32.4 1,391 1,228 3 33 1 126 genome Rickettsia peacockii Rustic chromosome [PROTEOBACTERIA] (CP001227) circular 1,288,492 32.6 964 927 3 34 - - genome Rickettsia peacockii Rustic plasmid pRPR [PROTEOBACTERIA] (CP001228) circular 26,406 34.7 20 20 - - - - genome Rickettsia philipii 364D chromosome [PROTEOBACTERIA] (CP003308) circular 1,287,740 32.5 1,349 1,218 3 33 1 94 genome Rickettsia prowazekii BuV67-CWPP chromosome [PROTEOBACTERIA] (CP003393) circular 1,111,445 29.0 897 855 3 33 1 5 genome Rickettsia prowazekii Chernikova chromosome [PROTEOBACTERIA] (CP003391) circular 1,109,804 29.0 900 860 3 33 1 3 genome Rickettsia prowazekii Dachau chromosome [PROTEOBACTERIA] (CP003394) circular 1,109,051 29.0 899 842 3 33 1 20 genome Rickettsia prowazekii GvV257 chromosome [PROTEOBACTERIA] (CP003395) circular 1,111,969 29.0 897 842 3 33 1 18 genome Rickettsia prowazekii Katsinyian chromosome [PROTEOBACTERIA] (CP003392) circular 1,111,454 29.0 899 858 3 33 1 4 genome Rickettsia prowazekii Madrid E chromosome [PROTEOBACTERIA] (AJ235269) circular 1,111,523 29.0 889 843 3 33 1 - genome Rickettsia prowazekii Rp22 chromosome [PROTEOBACTERIA] (CP001584) circular 1,111,612 29.0 900 858 3 33 1 5 genome Rickettsia prowazekii RpGvF24 chromosome [PROTEOBACTERIA] (CP003396) circular 1,112,101 29.0 897 850 3 33 1 10 genome Rickettsia rhipicephali 3-7-female6-CWPP chromosome [PROTEOBACTERIA] (CP003342) circular 1,290,368 32.4 1,402 1,105 3 33 1 260 genome Rickettsia rhipicephali 3-7-female6-CWPP plasmid pMCC_1 [PROTEOBACTERIA] (CP003343) circular 15,099 31.4 14 12 - - - 2 genome Rickettsia rickettsii 'Sheila Smith' chromosome [PROTEOBACTERIA] (CP000848) linear 1,257,710 32.5 1,331 1,207 3 34 1 86 genome Rickettsia rickettsii Arizona chromosome [PROTEOBACTERIA] (CP003307) circular 1,267,197 32.4 1,347 1,218 3 34 1 91 genome

43 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Rickettsia rickettsii Brazil chromosome [PROTEOBACTERIA] (CP003305) circular 1,255,681 32.5 1,339 1,220 3 34 1 81 genome Rickettsia rickettsii Colombia chromosome [PROTEOBACTERIA] (CP003306) circular 1,270,083 32.5 1,342 1,216 3 34 1 88 genome Rickettsia rickettsii Hauke chromosome [PROTEOBACTERIA] (CP003318) circular 1,269,774 32.5 1,347 1,220 3 34 1 89 genome Rickettsia rickettsii Hino chromosome [PROTEOBACTERIA] (CP003309) circular 1,269,837 32.5 1,346 1,218 3 34 1 90 genome Rickettsia rickettsii Hlp#2 chromosome [PROTEOBACTERIA] (CP003311) circular 1,270,751 32.5 1,339 1,199 3 34 1 102 genome Rickettsia rickettsii Iowa chromosome [PROTEOBACTERIA] (CP000766) circular 1,268,201 32.4 1,347 1,220 3 34 1 89 genome Rickettsia slovaca 13-B chromosome [PROTEOBACTERIA] (CP002428) circular 1,275,089 32.5 1,407 1,260 3 33 2 109 genome Rickettsia slovaca D-CWPP chromosome [PROTEOBACTERIA] (CP003375) circular 1,275,720 32.5 1,404 1,261 3 33 1 106 genome Rickettsia typhi B9991CWPP chromosome [PROTEOBACTERIA] (CP003398) circular 1,112,957 28.9 864 819 3 33 1 8 genome Rickettsia typhi TH1527 chromosome [PROTEOBACTERIA] (CP003397) circular 1,112,372 28.9 864 819 3 33 1 8 genome Rickettsia typhi Wilmington chromosome [PROTEOBACTERIA] (AE017197) circular 1,111,496 28.9 866 817 3 33 4 9 genome Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome [BACTEROIDETES] (CP002346) circular 2,155,121 35.0 2,027 1,967 9 40 2 9 genome Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome [BACTEROIDETES] (CP003388) circular 2,164,087 35.0 2,038 1,977 9 37 1 14 genome Riemerella anatipestifer plasmid pCFC1 [BACTEROIDETES] (AF048718) circular 3,966 27.2 4 4 - - - - plasmid Riemerella anatipestifer plasmid pCFC2 [BACTEROIDETES] (AF082180) circular 5,609 28.0 3 3 - - - - plasmid Riemerella anatipestifer RA-CH-1 chromosome [BACTEROIDETES] (CP003787) circular 2,309,519 35.1 2,178 2,086 9 41 1 41 genome Riemerella anatipestifer RA-GD chromosome [BACTEROIDETES] (CP002562) circular 2,166,384 35.0 2,045 1,888 9 40 3 105 genome Robiginitalea biformata HTCC2501 chromosome [BACTEROIDETES] (CP001712) circular 3,530,383 55.3 3,124 3,043 6 41 1 33 genome Roseburia hominis A2-183 chromosome [FIRMICUTES] (CP003040) circular 3,592,125 48.5 3,285 3,143 12 57 1 72 genome Roseiflexus castenholzii DSM 13941 chromosome [CHLOROFLEXI] (CP000804) circular 5,723,298 60.7 4,601 4,492 6 48 1 54 genome Roseiflexus sp. RS-1 chromosome [CHLOROFLEXI] (CP000686) circular 5,801,598 60.4 4,763 4,639 6 48 2 68 genome Roseobacter denitrificans OCh 114 chromosome [PROTEOBACTERIA] (CP000362) circular 4,133,097 59.0 3,898 3,818 3 37 2 38 genome Roseobacter denitrificans OCh 114 plasmid pTB1 [PROTEOBACTERIA] (CP000464) circular 106,469 56.0 99 96 - - - 3 genome Roseobacter denitrificans OCh 114 plasmid pTB2 [PROTEOBACTERIA] (CP000465) circular 69,269 59.2 57 54 - - - 3 genome Roseobacter denitrificans OCh 114 plasmid pTB3 [PROTEOBACTERIA] (CP000466) circular 16,575 55.0 15 15 - - - - genome Roseobacter denitrificans OCh 114 plasmid pTB4 [PROTEOBACTERIA] (CP000467) circular 5,824 55.6 9 9 - - - - genome Roseobacter litoralis Och 149 chromosome [PROTEOBACTERIA] (CP002623) circular 4,505,211 57.2 4,325 4,211 3 37 1 73 genome Roseobacter litoralis Och 149 plasmid pRLO149_83 [PROTEOBACTERIA] (CP002625) circular 83,129 58.8 93 92 - - - 1 genome Roseobacter litoralis Och 149 plasmid pRLO149_83 [PROTEOBACTERIA] (CP002626) circular 63,532 55.2 54 41 - - - 13 genome Roseobacter litoralis Och 149 plasmid pRLO149_94 [PROTEOBACTERIA] (CP002624) circular 93,578 58.4 87 87 - - - - genome Rothia dentocariosa ATCC 17931 chromosome [ACTINOBACTERIA] (CP002280) circular 2,506,025 53.7 2,126 2,040 10 49 3 24 genome Rothia mucilaginosa chromosome [ACTINOBACTERIA] (AP011540) circular 2,264,603 59.6 1,764 1,695 9 49 1 10 genome Rubinisphaera brasiliensis DSM 5305 chromosome [PLANCTOMYCETES] (CP002546) circular 6,006,602 56.4 4,816 4,715 6 45 2 48 genome Rubrivivax gelatinosus IL144 chromosome [PROTEOBACTERIA] (AP012320) circular 5,043,253 71.2 4,588 4,475 9 50 3 51 genome Rubrobacter xylanophilus DSM 9941 chromosome [ACTINOBACTERIA] (CP000386) circular 3,225,748 70.5 3,207 3,101 3 45 3 55 genome Ruegeria pomeroyi DSS-3 chromosome [PROTEOBACTERIA] (CP000031) circular 4,109,437 64.2 3,952 3,844 9 50 1 48 genome Ruegeria pomeroyi DSS-3 megaplasmid [PROTEOBACTERIA] (CP000032) circular 491,611 62.8 460 450 - 2 - 8 genome Ruegeria sp. PR1b plasmid pSD20 [PROTEOBACTERIA] (AF416330) circular 76,093 62.6 52 52 - - - - plasmid Ruegeria sp. PR1b plasmid pSD25 [PROTEOBACTERIA] (AF416331) circular 148,650 59.6 133 133 - - - - plasmid Ruegeria sp. TM1040 chromosome [PROTEOBACTERIA] (CP000377) circular 3,200,938 60.4 3,061 2,998 3 39 3 18 genome Ruegeria sp. TM1040 megaplasmid [PROTEOBACTERIA] (CP000376) circular 821,788 59.4 753 713 9 18 - 13 genome Ruegeria sp. TM1040 plasmid unnamed [PROTEOBACTERIA] (CP000375) circular 130,973 55.7 108 99 3 4 - 2 genome Ruminiclostridium thermocellum ATCC 27405 chromosome [FIRMICUTES] (CP000568) circular 3,843,301 39.0 3,376 3,224 12 56 3 81 genome Ruminiclostridium thermocellum DSM 1313 chromosome [FIRMICUTES] (CP002416) circular 3,561,619 39.1 3,087 2,975 12 56 2 42 genome Ruminococcus albus 7 chromosome [FIRMICUTES] (CP002403) circular 3,685,408 44.2 3,337 3,201 12 60 2 62 genome Ruminococcus albus 7 pRUMAL01 [FIRMICUTES] (CP002404) circular 420,706 38.1 402 373 - 13 - 16 genome Ruminococcus albus 7 pRUMAL02 [FIRMICUTES] (CP002405) circular 352,646 44.4 303 293 - - - 10 genome Ruminococcus albus 7 pRUMAL04 [FIRMICUTES] (CP002407) circular 7,420 42.8 11 11 - - - - genome Runella slithyformis DSM 19594 chromosome [BACTEROIDETES] (CP002859) circular 6,568,739 46.6 5,537 5,415 6 42 2 72 genome Runella slithyformis DSM 19594 plasmid pRUNSL01 [BACTEROIDETES] (CP002860) circular 106,999 46.3 78 78 - - - - genome Runella slithyformis DSM 19594 plasmid pRUNSL02 [BACTEROIDETES] (CP002861) circular 93,527 41.4 90 90 - - - - genome Runella slithyformis DSM 19594 plasmid pRUNSL03 [BACTEROIDETES] (CP002862) circular 66,926 40.8 64 62 - - - 2 genome Runella slithyformis DSM 19594 plasmid pRUNSL04 [BACTEROIDETES] (CP002863) circular 44,754 43.2 41 41 - - - - genome Runella slithyformis DSM 19594 plasmid pRUNSL05 [BACTEROIDETES] (CP002864) circular 38,784 44.2 32 32 - - - - genome Saccharomonospora glauca K62 pSACGL01 [ACTINOBACTERIA] (CM001485) circular 25,362 66.8 29 29 - - - - plasmid Saccharomonospora viridis DSM 43017 chromosome [ACTINOBACTERIA] (CP001683) circular 4,308,349 67.3 3,897 3,772 9 47 2 67 genome Saccharophagus degradans 2-40 chromosome [PROTEOBACTERIA] (CP000282) circular 5,057,531 45.8 4,184 4,084 6 41 3 50 genome Saccharopolyspora erythraea NRRL 2338 chromosome [ACTINOBACTERIA] (AM420293) circular 8,212,805 71.1 7,130 7,005 12 50 1 62 genome Salinibacter ruber DSM 13855 chromosome [BACTEROIDETES] (CP000159) circular 3,551,823 66.2 2,865 2,801 3 44 1 11 genome Salinibacter ruber DSM 13855 plasmid pSR35 [BACTEROIDETES] (CP000160) circular 35,505 57.9 33 32 - - - 1 genome Salinibacter ruber M8 chromosome [BACTEROIDETES] (FP565814) circular 3,619,447 66.1 3,009 2,935 3 44 1 26 genome Salinibacter ruber M8 plasmid pSR11 [BACTEROIDETES] (FP565810) circular 11,229 63.3 12 12 - - - - genome Salinibacter ruber M8 plasmid pSR56 [BACTEROIDETES] (FP565811) circular 56,529 60.0 35 35 - - - - genome Salinibacter ruber M8 plasmid pSR61 [BACTEROIDETES] (FP565812) circular 61,373 59.6 38 38 - - - - genome Salinibacter ruber M8 plasmid pSR84 [BACTEROIDETES] (FP565813) circular 84,340 63.2 57 51 - 1 - 5 genome Salinispora arenicola CNS-205 chromosome [ACTINOBACTERIA] (CP000850) circular 5,786,361 69.5 4,985 4,844 9 52 2 78 genome Salinispora tropica CNB-440 chromosome [ACTINOBACTERIA] (CP000667) circular 5,183,331 69.5 4,627 4,477 9 50 2 89 genome Salmonella bongori NCTC 12419 chromosome [PROTEOBACTERIA] (FR877557) circular 4,460,105 51.3 4,191 4,010 22 84 - 75 genome Salmonella enterica arizonae sv. 62:z4 z23:- str. RSK2980 chromosome [PROTEOBACTERIA] (CP000880) circular 4,600,800 51.4 4,387 4,071 22 84 1 209 genome Salmonella enterica enterica CVM19633 sv. Schwarzengrund plasmid pCVM19633_110 [PROTEOBACTERIA] (CP001125) circular 110,227 54.0 119 108 - - - 11 genome Salmonella enterica enterica CVM19633 sv. Schwarzengrund plasmid pCVM19633_4 [PROTEOBACTERIA] (CP001126) circular 4,585 47.5 4 4 - - - - genome Salmonella enterica enterica CVM19633 sv. Schwarzengrund chromosome [PROTEOBACTERIA] (CP001127) circular 4,709,075 52.2 4,565 4,411 22 84 3 45 genome Salmonella enterica enterica sv. Agona str. SL483 chromosome [PROTEOBACTERIA] (CP001138) circular 4,798,660 52.1 4,628 4,473 22 84 10 39 genome Salmonella enterica enterica sv. Agona str. SL483 plasmidunnamed [PROTEOBACTERIA] (CP001137) circular 37,978 40.7 52 52 - - - - genome Salmonella enterica enterica sv. Brandenburg plasmid pUO-SbR5 [PROTEOBACTERIA] (AM746675) linear 6,478 50.7 10 9 - - - 1 plasmid Salmonella enterica enterica sv. Choleraesuis plasmid cryptic plasmid [PROTEOBACTERIA] (AB076707) circular 6,066 53.6 7 7 - - - - plasmid Salmonella enterica enterica sv. Choleraesuis plasmid pKDSC50 [PROTEOBACTERIA] (AB040415) circular 49,503 52.1 48 48 - - - - plasmid Salmonella enterica enterica sv. Choleraesuis plasmid pMAK1 [PROTEOBACTERIA] (AB366440) circular 208,409 47.4 236 222 - - - 14 plasmid Salmonella enterica enterica sv. Choleraesuis plasmid pOU7519 [PROTEOBACTERIA] (EU219534) circular 127,212 52.8 143 127 - - - 16 plasmid Salmonella enterica enterica sv. Choleraesuis str. SC-B67 chromosome [PROTEOBACTERIA] (AE017220) circular 4,755,700 52.2 4,641 4,340 22 85 - 194 genome Salmonella enterica enterica sv. Choleraesuis str. SC-B67 plasmid pSC138 [PROTEOBACTERIA] (AY509004) circular 138,742 51.3 156 141 - - - 15 genome Salmonella enterica enterica sv. Choleraesuis str. SC-B67 plasmid pSCV50 [PROTEOBACTERIA] (AY509003) circular 49,558 52.1 61 56 - - - 5 genome Salmonella enterica enterica sv. Choleraesuis str. SCSA50 plasmid pSCV50 [PROTEOBACTERIA] (CM001063) circular 49,558 52.1 61 56 - - - 5 plasmid Salmonella enterica enterica sv. Dublin plasmid IncW pIE321 [PROTEOBACTERIA] (EF633507) circular 38,150 58.4 45 43 - - - 2 plasmid Salmonella enterica enterica sv. Dublin plasmid pMAK2 [PROTEOBACTERIA] (AB366441) circular 61,571 53.8 54 52 - - - 2 plasmid Salmonella enterica enterica sv. Dublin plasmid pMAK3 [PROTEOBACTERIA] (AB366442) circular 39,924 56.9 52 51 - - - 1 plasmid Salmonella enterica enterica sv. Dublin plasmid pOU1114 [PROTEOBACTERIA] (DQ115387) circular 34,595 41.5 47 47 - - - - plasmid

44 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Salmonella enterica enterica sv. Dublin plasmid pOU1115 [PROTEOBACTERIA] (DQ115388) circular 74,589 48.6 89 88 - - - 1 plasmid Salmonella enterica enterica sv. Dublin str. CT_02021853 chromosome [PROTEOBACTERIA] (CP001144) circular 4,842,908 52.2 4,700 4,488 22 82 3 105 genome Salmonella enterica enterica sv. Dublin str. CT_02021853 plasmid pCT02021853_74 [PROTEOBACTERIA] (CP001143) circular 74,551 48.6 85 78 - - 1 6 genome Salmonella enterica enterica sv. Dublin str. SD3246 plasmid p3246_74 [PROTEOBACTERIA] (CM001152) circular 74,548 48.6 84 78 - - - 6 plasmid Salmonella enterica enterica sv. Enteritidis plasmid pC [PROTEOBACTERIA] (AY079201) circular 5,269 48.4 4 4 - - - - plasmid Salmonella enterica enterica sv. Enteritidis plasmid pP [PROTEOBACTERIA] (AY079199) circular 4,301 49.5 3 3 - - - - plasmid Salmonella enterica enterica sv. Enteritidis plasmid pSE34 [PROTEOBACTERIA] (EU219533) circular 32,950 41.2 53 53 - - - - plasmid Salmonella enterica enterica sv. Enteritidis plasmid pSLA5 [PROTEOBACTERIA] (HE663166) circular 59,374 52.0 76 69 - - - 7 plasmid Salmonella enterica enterica sv. Enteritidis plasmid pVCM04 [PROTEOBACTERIA] (HM231165) circular 3,583 53.6 5 5 - - - - plasmid Salmonella enterica enterica sv. Enteritidis str. P125109 chromosome [PROTEOBACTERIA] (AM933172) circular 4,685,848 52.2 4,519 4,373 22 83 - 41 genome Salmonella enterica enterica sv. Gallinarum str. 287/91 chromosome [PROTEOBACTERIA] (AM933173) circular 4,658,697 52.2 4,473 4,165 22 75 - 211 genome Salmonella enterica enterica sv. Gallinarum str. SG9 unnamed plasmid [PROTEOBACTERIA] (CM001154) circular 87,371 53.5 106 98 - - - 8 plasmid Salmonella enterica enterica sv. Gallinarum/pullorum str. RKS5078 chromosome [PROTEOBACTERIA] (CP003047) circular 4,637,962 52.2 4,457 4,091 22 73 - 271 genome Salmonella enterica enterica sv. Heidelberg palsmid pQnrS1-cp17s [PROTEOBACTERIA] (JN393220) circular 10,047 50.6 11 11 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pCS0010A_95 [PROTEOBACTERIA] (HQ114283) circular 95,175 49.6 95 95 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pNF1358 [PROTEOBACTERIA] (DQ017661) circular 99,331 50.0 71 70 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSal6919a [PROTEOBACTERIA] (JF274991) circular 112,673 54.1 140 140 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSal8934a [PROTEOBACTERIA] (JF274993) circular 91,369 49.8 125 125 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSal8934b [PROTEOBACTERIA] (JF274992) circular 133,216 53.4 163 163 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSARA30 [PROTEOBACTERIA] (JX139735) circular 37,697 41.2 41 41 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSARC14-41 [PROTEOBACTERIA] (JQ418540) circular 43,577 47.4 67 67 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSD_174 [PROTEOBACTERIA] (JF267651) circular 173,673 52.5 198 198 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSD_77 [PROTEOBACTERIA] (JF267653) circular 77,331 48.8 112 112 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSD_88 [PROTEOBACTERIA] (JF267652) circular 88,505 51.6 117 117 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSD107 [PROTEOBACTERIA] (JX566770) circular 107,637 51.6 150 144 - - 1 5 plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSD4.0 [PROTEOBACTERIA] (JX566767) circular 4,060 49.4 4 4 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSD5.6 [PROTEOBACTERIA] (JX566769) circular 5,687 46.2 6 6 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSGSC3045-121 [PROTEOBACTERIA] (JQ418541) circular 108,459 50.0 179 179 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSH111_227 [PROTEOBACTERIA] (JN983042) circular 227,608 45.6 258 258 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSH146_65 [PROTEOBACTERIA] (JN983044) circular 65,030 42.4 96 96 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSH163_135 [PROTEOBACTERIA] (JN983045) circular 135,168 52.2 163 163 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSH696_117 [PROTEOBACTERIA] (JN983047) circular 117,278 50.8 152 152 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSPI12 [PROTEOBACTERIA] (GU949535) circular 4,080 51.8 7 7 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSPUV [PROTEOBACTERIA] (JN885081) circular 86,686 53.3 118 114 - - - 4 plasmid Salmonella enterica enterica sv. Heidelberg plasmid pSRC15 [PROTEOBACTERIA] (GQ379901) circular 8,688 61.0 10 10 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pVQS1 [PROTEOBACTERIA] (JQ609357) circular 40,995 50.0 48 48 - - - - plasmid Salmonella enterica enterica sv. Heidelberg plasmid pYT2 [PROTEOBACTERIA] (AB605179) circular 132,842 53.4 163 163 - - - - plasmid Salmonella enterica enterica sv. Heidelberg pSENV [PROTEOBACTERIA] (JN885080) circular 59,368 52.0 89 84 - - - 5 plasmid Salmonella enterica enterica sv. Heidelberg pSH111_166 [PROTEOBACTERIA] (JN983043) circular 165,791 53.1 200 200 - - - - plasmid Salmonella enterica enterica sv. Heidelberg pSH1148_107 [PROTEOBACTERIA] (JN983049) circular 106,833 52.4 132 132 - - - - plasmid Salmonella enterica enterica sv. Heidelberg pSH146_32 [PROTEOBACTERIA] (JX258655) circular 32,447 40.8 49 49 - - - - plasmid Salmonella enterica enterica sv. Heidelberg pSH146_87 [PROTEOBACTERIA] (JX445149) circular 86,586 50.2 121 121 - - - - plasmid Salmonella enterica enterica sv. Heidelberg pSH163_120 [PROTEOBACTERIA] (JN983046) circular 120,524 51.0 164 164 - - - - plasmid Salmonella enterica enterica sv. Heidelberg pSH163_34 [PROTEOBACTERIA] (JX258656) circular 33,763 41.5 52 52 - - - - plasmid Salmonella enterica enterica sv. Heidelberg pSH696_135 [PROTEOBACTERIA] (JN983048) circular 135,423 52.2 161 161 - - - - plasmid Salmonella enterica enterica sv. Heidelberg pSH696_34 [PROTEOBACTERIA] (JX258654) circular 33,765 41.5 52 52 - - - - plasmid Salmonella enterica enterica sv. Heidelberg str. B182 chromosome [PROTEOBACTERIA] (CP003416) circular 4,750,465 52.2 4,584 4,371 21 84 1 107 genome Salmonella enterica enterica sv. Heidelberg str. B182 plasmid pB182_37 [PROTEOBACTERIA] (CP003417) circular 37,581 41.2 39 37 - - - 2 genome Salmonella enterica enterica sv. Heidelberg str. SL476 chromosome [PROTEOBACTERIA] (CP001120) circular 4,888,768 52.1 4,730 4,585 22 84 4 35 genome Salmonella enterica enterica sv. Heidelberg str. SL476 plasmid pSL476_3 [PROTEOBACTERIA] (CP001119) circular 3,373 55.1 4 4 - - - - genome Salmonella enterica enterica sv. Heidelberg str. SL476 plasmid pSL476_91 [PROTEOBACTERIA] (CP001118) circular 91,374 50.3 100 99 - - - 1 genome Salmonella enterica enterica sv. Kentucky str. CVM29188 plasmid pCVM29188_101 [PROTEOBACTERIA] (CP001121) linear 101,461 50.1 111 110 - - - 1 plasmid Salmonella enterica enterica sv. Kentucky str. CVM29188 plasmid pCVM29188_146 [PROTEOBACTERIA] (CP001122) linear 146,811 49.4 151 141 - - 5 5 plasmid Salmonella enterica enterica sv. Kentucky str. CVM29188 plasmid pCVM29188_46 [PROTEOBACTERIA] (CP001123) linear 46,121 42.8 43 31 - - 2 10 plasmid Salmonella enterica enterica sv. Newport str. SL254 chromosome [PROTEOBACTERIA] (CP001113) circular 4,827,641 52.2 4,675 4,529 22 85 3 36 genome Salmonella enterica enterica sv. Newport str. SL254 plasmid pSL254_3 [PROTEOBACTERIA] (CP001112) circular 3,605 43.0 2 1 - - 1 - genome Salmonella enterica enterica sv. Newport str. SL254 plasmid pSN254 [PROTEOBACTERIA] (CP000604) circular 176,473 52.8 198 195 - - - 3 genome Salmonella enterica enterica sv. Paratyphi A str. AKU_12601 chromosome [PROTEOBACTERIA] (FM200053) circular 4,581,797 52.2 4,482 4,185 22 81 33 161 genome Salmonella enterica enterica sv. Paratyphi A str. ATCC 9150 chromosome [PROTEOBACTERIA] (CP000026) circular 4,585,229 52.2 4,490 4,185 22 82 36 165 genome Salmonella enterica enterica sv. Paratyphi B str. SPB7 chromosome [PROTEOBACTERIA] (CP000886) circular 4,858,887 52.1 4,715 4,553 22 85 - 55 genome Salmonella enterica enterica sv. Paratyphi C str. RKS4594 chromosome [PROTEOBACTERIA] (CP000857) circular 4,833,080 52.2 4,701 4,419 22 83 - 177 genome Salmonella enterica enterica sv. Paratyphi C str. RKS4594 plasmid pSPCV [PROTEOBACTERIA] (CP000858) circular 55,414 52.8 63 57 - - - 6 genome Salmonella enterica enterica sv. Typhi plasmid R27 [PROTEOBACTERIA] (AF250878) circular 180,461 45.8 207 207 - - - - plasmid Salmonella enterica enterica sv. Typhi str. 404ty plasmid pBSSB1 [PROTEOBACTERIA] (AM419040) linear 27,037 36.6 33 33 - - - - plasmid Salmonella enterica enterica sv. Typhi str. CT18 chromosome [PROTEOBACTERIA] (AL513382) circular 4,809,037 52.1 4,455 4,111 22 79 9 233 genome Salmonella enterica enterica sv. Typhi str. CT18 plasmid pHCM1 [PROTEOBACTERIA] (AL513383) circular 218,160 47.6 246 235 - - - 10 genome Salmonella enterica enterica sv. Typhi str. CT18 plasmid pHCM2 [PROTEOBACTERIA] (AL513384) linear 106,516 50.6 129 128 - 1 - - genome Salmonella enterica enterica sv. Typhi str. P-stx-12 chromosome [PROTEOBACTERIA] (CP003278) circular 4,768,352 52.1 4,696 4,430 22 77 - 167 genome Salmonella enterica enterica sv. Typhi str. P-stx-12 plasmid unnamed [PROTEOBACTERIA] (CP003279) circular 181,431 46.4 195 188 - - - 7 genome Salmonella enterica enterica sv. Typhi str. Ty2 chromosome [PROTEOBACTERIA] (AE014613) circular 4,791,961 52.1 4,716 4,453 22 78 - 163 genome Salmonella enterica enterica sv. Typhimurium plasmid pAnkS [PROTEOBACTERIA] (DQ916413) circular 8,271 47.1 4 4 - - - - plasmid Salmonella enterica enterica sv. Typhimurium plasmid pSBardo-Kan [PROTEOBACTERIA] (HQ230977) circular 8,198 46.8 10 8 - - 2 - plasmid Salmonella enterica enterica sv. Typhimurium plasmid pSC101 [PROTEOBACTERIA] (X01654) circular 9,263 51.2 6 6 - - - - plasmid Salmonella enterica enterica sv. Typhimurium plasmid pSe-Kan [PROTEOBACTERIA] (HQ230976) circular 7,132 45.9 9 7 - - 2 - plasmid Salmonella enterica enterica sv. Typhimurium plasmid pSLT-BT [PROTEOBACTERIA] (FN432031) circular 117,047 53.5 120 110 - - - 5 plasmid Salmonella enterica enterica sv. Typhimurium plasmid pSN11/00Kan [PROTEOBACTERIA] (GQ470395) circular 5,698 52.8 8 6 - - 2 - plasmid Salmonella enterica enterica sv. Typhimurium plasmid pU302L [PROTEOBACTERIA] (AY333434) circular 84,514 54.0 104 103 - - - - plasmid Salmonella enterica enterica sv. Typhimurium plasmid pU302S [PROTEOBACTERIA] (AY333433) circular 3,208 49.4 6 4 - - 2 - plasmid Salmonella enterica enterica sv. Typhimurium plasmid pYT1 [PROTEOBACTERIA] (AB576781) circular 112,670 54.1 119 119 - - - - plasmid Salmonella enterica enterica sv. Typhimurium plasmid R621a [PROTEOBACTERIA] (AP011954) circular 93,185 48.8 110 103 - - 1 - plasmid Salmonella enterica enterica sv. Typhimurium plasmid R64 [PROTEOBACTERIA] (AP005147) circular 120,826 49.6 134 134 - - - - plasmid Salmonella enterica enterica sv. Typhimurium str. 14028S chromosome [PROTEOBACTERIA] (CP001363) circular 4,870,265 52.2 4,702 4,558 22 85 1 36 genome Salmonella enterica enterica sv. Typhimurium str. 14028S plasmid unnamed [PROTEOBACTERIA] (CP001362) circular 93,832 53.1 112 106 - - 1 5 genome Salmonella enterica enterica sv. Typhimurium str. 798 chromosome [PROTEOBACTERIA] (CP003386) circular 4,876,219 52.2 4,709 4,531 22 82 - 74 genome Salmonella enterica enterica sv. Typhimurium str. 798 plasmid p798_93 [PROTEOBACTERIA] (CP003387) circular 93,877 53.1 110 104 - - - 6 genome Salmonella enterica enterica sv. Typhimurium str. D23580 chromosome [PROTEOBACTERIA] (FN424405) circular 4,879,400 52.2 4,719 4,565 22 87 - 45 genome Salmonella enterica enterica sv. Typhimurium str. LT2 chromosome [PROTEOBACTERIA] (AE006468) circular 4,857,432 52.2 4,631 4,451 22 86 10 54 genome

45 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Salmonella enterica enterica sv. Typhimurium str. LT2 plasmid pSLT [PROTEOBACTERIA] (AE006471) circular 93,939 53.1 112 102 - - 1 - genome Salmonella enterica enterica sv. Typhimurium str. SL1344 chromosome [PROTEOBACTERIA] (FQ312003) circular 4,878,012 52.2 4,713 4,567 22 85 - 39 genome Salmonella enterica enterica sv. Typhimurium str. SL1344 plasmid pCol1B9_SL1344 [PROTEOBACTERIA] (HE654725) circular 86,908 50.2 97 96 - - 1 - genome Salmonella enterica enterica sv. Typhimurium str. SL1344 plasmid pRSF1010_SL1344 [PROTEOBACTERIA] (HE654726) circular 8,688 61.0 10 10 - - - - genome Salmonella enterica enterica sv. Typhimurium str. SL1344 plasmid pSLT_SL1344 [PROTEOBACTERIA] (HE654724) circular 93,842 53.1 113 108 - - 1 4 genome Salmonella enterica enterica sv. Typhimurium str. ST4/74 chromosome [PROTEOBACTERIA] (CP002487) circular 4,878,013 52.2 4,713 4,568 22 85 - 38 genome Salmonella enterica enterica sv. Typhimurium str. ST4/74 plasmid TY474p1 [PROTEOBACTERIA] (CP002488) circular 93,842 53.1 112 108 - - - 4 genome Salmonella enterica enterica sv. Typhimurium str. ST4/74 plasmid TY474p2 [PROTEOBACTERIA] (CP002489) circular 86,908 50.2 96 96 - - - - genome Salmonella enterica enterica sv. Typhimurium str. ST4/74 plasmid TY474p3 [PROTEOBACTERIA] (CP002490) circular 8,688 61.0 10 10 - - - - genome Salmonella enterica enterica sv. Typhimurium str. T000240 chromosome [PROTEOBACTERIA] (AP011957) circular 4,954,814 52.2 4,802 4,653 22 83 - 44 genome Salmonella enterica enterica sv. Typhimurium str. T000240 plasmid pSTMDT12_L [PROTEOBACTERIA] (AP011958) circular 106,510 53.5 127 119 - - - 8 genome Salmonella enterica enterica sv. Typhimurium str. T000240 plasmid pSTMDT12_S [PROTEOBACTERIA] (AP011959) circular 8,670 60.9 10 10 - - - - genome Salmonella enterica enterica sv. Typhimurium str. UK-1 chromosome [PROTEOBACTERIA] (CP002614) circular 4,817,868 52.2 4,634 4,496 22 85 - 31 genome Salmonella enterica enterica sv. Typhimurium str. UK-1 plasmid pSTUK-100 [PROTEOBACTERIA] (CP002615) circular 93,277 53.0 110 104 - - - 6 genome Salmonella enterica enterica sv. Virchow str. SL491 plasmid pSL491_5 [PROTEOBACTERIA] (CP001148) circular 5,880 46.9 7 7 - - - - plasmid Salmonella enterica enterica sv. Westhampton plasmid pWES-1 [PROTEOBACTERIA] (DQ268764) circular 10,908 62.2 12 11 - - - 1 plasmid Salmonella enterica plasmid pAM04528 [PROTEOBACTERIA] (FJ621587) circular 158,213 51.9 180 180 - - - - plasmid Salmonella enterica plasmid pOU1113 [PROTEOBACTERIA] (AY517905) circular 80,156 53.8 89 83 - - - - plasmid Salmonella enterica plasmid pSFD10 [PROTEOBACTERIA] (AY048853) circular 4,091 51.8 6 6 - - - - plasmid Sanguibacter keddieii DSM 10542 chromosome [ACTINOBACTERIA] (CP001819) circular 4,253,413 71.9 3,731 3,562 12 51 2 104 genome Saprospira grandis Lewin chromosome [BACTEROIDETES] (CP002831) circular 4,345,237 46.4 3,843 3,725 10 48 5 55 genome Saprospira grandis Lewin plasmid unnamed [BACTEROIDETES] (CP002832) circular 54,948 46.5 48 47 - - - 1 genome Sebaldella termitidis ATCC 33386 chromosome [FUSOBACTERIA] (CP001739) circular 4,418,842 33.5 4,102 4,014 12 40 2 34 genome Sebaldella termitidis ATCC 33386 plasmid pSTERM01 [FUSOBACTERIA] (CP001740) circular 54,160 28.2 56 56 - - - - genome Sebaldella termitidis ATCC 33386 plasmid pSTERM02 [FUSOBACTERIA] (CP001741) circular 13,648 29.4 16 15 - - - 1 genome secondary endosymbiont of Ctenarytaina eucalypti Thao2000 chromosome [PROTEOBACTERIA] (CP003546) circular 1,441,139 43.3 827 765 3 40 2 17 genome secondary endosymbiont of Heteropsylla cubana Thao2000 chromosome [PROTEOBACTERIA] (CP003547) circular 1,121,596 28.9 595 530 3 38 2 21 genome Segniliparus rotundus DSM 44985 chromosome [ACTINOBACTERIA] (CP001958) circular 3,157,527 66.8 3,062 2,963 3 47 2 47 genome Selenomonas ruminantium lactilytica TAM6421 chromosome [FIRMICUTES] (AP012292) circular 3,003,680 50.7 2,873 2,757 21 69 3 23 genome Selenomonas ruminantium lactilytica TAM6421 plasmid pSRC1 [FIRMICUTES] (AP012299) circular 285,449 50.0 250 238 - - - 12 genome Selenomonas ruminantium lactilytica TAM6421 plasmid pSRC2 [FIRMICUTES] (AP012293) circular 94,348 46.1 110 103 - - - 7 genome Selenomonas ruminantium lactilytica TAM6421 plasmid pSRC3 [FIRMICUTES] (AP012300) circular 73,380 44.8 87 85 - 1 - 1 genome Selenomonas ruminantium lactilytica TAM6421 plasmid pSRC4 [FIRMICUTES] (AP012294) circular 72,893 45.7 82 80 - 2 - - genome Selenomonas ruminantium lactilytica TAM6421 plasmid pSRC5 [FIRMICUTES] (AP012301) circular 35,182 46.7 41 40 - - - 1 genome Selenomonas ruminantium lactilytica TAM6421 plasmid pSRC6 [FIRMICUTES] (AP012295) circular 29,913 42.0 28 28 - - - - genome Selenomonas ruminantium lactilytica TAM6421 plasmid pSRC7 [FIRMICUTES] (AP012296) circular 29,781 48.4 16 16 - - - - genome Selenomonas ruminantium lactilytica TAM6421 plasmid pSRC8 [FIRMICUTES] (AP012297) circular 4,693 44.4 5 5 - - - - genome Selenomonas ruminantium plasmid pONE429 [FIRMICUTES] (AB003192) circular 2,100 41.2 1 1 - - - - plasmid Selenomonas ruminantium plasmid pONE430 [FIRMICUTES] (AB003193) circular 1,527 46.4 1 1 - - - - plasmid Selenomonas ruminantium plasmid pSRD191 [FIRMICUTES] (AY572460) circular 1,447 45.1 1 1 - - - - plasmid Selenomonas ruminantium plasmid pSRD192 [FIRMICUTES] (DQ186900) circular 2,334 42.5 1 1 - - - - plasmid Selenomonas ruminantium plasmid pSRD77 [FIRMICUTES] (JF807312) circular 1,471 46.5 1 1 - - - - plasmid Selenomonas sputigena ATCC 35185 chromosome [FIRMICUTES] (CP002637) circular 2,568,361 57.1 2,339 2,254 12 53 2 18 genome Serratia entomophila plasmid pADAP [PROTEOBACTERIA] (AF135182) circular 153,404 50.7 149 141 - - - - plasmid Serratia marcescens plasmid pSM22 [PROTEOBACTERIA] (HQ896493) circular 43,190 58.5 31 31 - - - - plasmid Serratia marcescens plasmid R478 [PROTEOBACTERIA] (BX664015) circular 274,762 45.5 294 290 - - - 4 plasmid Serratia marcescens plasmid R478 [PROTEOBACTERIA] (U59131) linear 2,120 36.9 2 2 - - - - plasmid Serratia plymuthica AS9 chromosome [PROTEOBACTERIA] (CP002773) circular 5,442,880 56.0 5,012 4,882 22 86 2 20 genome Serratia proteamaculans 568 chromosome [PROTEOBACTERIA] (CP000826) circular 5,448,853 55.1 5,038 4,895 22 84 3 34 genome Serratia proteamaculans 568 plasmid pSPRO01 [PROTEOBACTERIA] (CP000827) circular 46,804 49.2 69 67 - - - 2 genome Serratia sp. AS12 chromosome [PROTEOBACTERIA] (CP002774) circular 5,443,009 56.0 5,013 4,883 22 86 2 20 genome Serratia sp. AS13 chromosome [PROTEOBACTERIA] (CP002775) circular 5,442,549 56.0 5,012 4,879 22 86 2 23 genome Serratia symbiotica str. Cinara cedri chromosome [PROTEOBACTERIA] (CP002295) circular 1,762,765 29.2 772 672 3 36 3 59 genome Shewanella amazonensis SB2B chromosome [PROTEOBACTERIA] (CP000507) circular 4,306,142 53.6 3,800 3,638 25 101 4 31 genome Shewanella baltica BA175 chromosome [PROTEOBACTERIA] (CP002767) circular 5,066,051 46.2 4,363 4,176 31 108 2 45 genome Shewanella baltica BA175 plasmid pSBAL17501 [PROTEOBACTERIA] (CP002768) circular 72,392 43.6 64 61 - - - 3 genome Shewanella baltica BA175 plasmid pSBAL17502 [PROTEOBACTERIA] (CP002769) circular 60,958 43.6 51 50 - - - 1 genome Shewanella baltica OS117 chromosome [PROTEOBACTERIA] (CP002811) circular 5,242,964 46.2 4,613 4,375 31 95 2 109 genome Shewanella baltica OS117 plasmid pSBAL11701 [PROTEOBACTERIA] (CP002812) circular 120,153 41.4 125 124 - - - 1 genome Shewanella baltica OS117 plasmid pSBAL11702 [PROTEOBACTERIA] (CP002814) circular 71,173 42.2 83 78 - - - 5 genome Shewanella baltica OS117 plasmid pSBAL11703 [PROTEOBACTERIA] (CP002813) circular 91,728 42.9 99 97 - - - 2 genome Shewanella baltica OS155 chromosome [PROTEOBACTERIA] (CP000563) circular 5,127,376 46.3 4,518 4,270 31 107 2 107 genome Shewanella baltica OS155 plasmid pSbal01 [PROTEOBACTERIA] (CP000564) circular 116,763 46.7 101 90 - 10 - 1 genome Shewanella baltica OS155 plasmid pSbal02 [PROTEOBACTERIA] (CP000565) circular 74,000 42.4 86 81 - - - 5 genome Shewanella baltica OS185 chromosome [PROTEOBACTERIA] (CP000753) circular 5,229,686 46.3 4,521 4,336 31 105 3 45 genome Shewanella baltica OS185 plasmid pS18501 [PROTEOBACTERIA] (CP000754) circular 83,224 43.7 87 86 - - - 1 genome Shewanella baltica OS195 chromosome [PROTEOBACTERIA] (CP000891) circular 5,347,283 46.3 4,654 4,483 31 106 1 32 genome Shewanella baltica OS195 plasmid pS19501 [PROTEOBACTERIA] (CP000892) circular 75,605 42.7 70 70 - - - - genome Shewanella baltica OS195 plasmid pS19502 [PROTEOBACTERIA] (CP000893) circular 75,508 44.1 75 74 - - - 1 genome Shewanella baltica OS195 plasmid pS19503 [PROTEOBACTERIA] (CP000894) circular 49,148 42.9 53 53 - - - - genome Shewanella baltica OS223 chromosome [PROTEOBACTERIA] (CP001252) circular 5,145,902 46.3 4,417 4,221 31 108 1 55 genome Shewanella baltica OS223 plasmid pS22301 [PROTEOBACTERIA] (CP001253) circular 88,311 44.4 84 83 - - - 1 genome Shewanella baltica OS223 plasmid pS22302 [PROTEOBACTERIA] (CP001254) circular 65,448 44.6 62 62 - - - - genome Shewanella baltica OS223 plasmid pS22303 [PROTEOBACTERIA] (CP001255) circular 59,223 46.7 49 48 - - - 1 genome Shewanella baltica OS678 chromosome [PROTEOBACTERIA] (CP002383) circular 5,288,069 46.3 4,587 4,412 31 104 2 37 genome Shewanella baltica OS678 plasmid pSBAL67801 [PROTEOBACTERIA] (CP002384) circular 80,698 44.7 71 68 - - - 3 genome Shewanella denitrificans OS217 chromosome [PROTEOBACTERIA] (CP000302) circular 4,545,906 45.1 3,930 3,740 25 93 3 69 genome Shewanella frigidimarina NCIMB 400 chromosome [PROTEOBACTERIA] (CP000447) circular 4,845,257 41.6 4,175 4,000 28 96 3 48 genome Shewanella halifaxensis HAW-EB4 chromosome [PROTEOBACTERIA] (CP000931) circular 5,226,917 44.6 4,462 4,277 31 124 2 28 genome Shewanella loihica PV-4 chromosome [PROTEOBACTERIA] (CP000606) circular 4,602,594 53.7 4,004 3,855 25 94 3 27 genome Shewanella oneidensis MR-1 chromosome [PROTEOBACTERIA] (AE014299) circular 4,969,811 46.0 4,403 4,065 28 102 13 195 genome Shewanella oneidensis MR-1 plasmid pMR-1 [PROTEOBACTERIA] (AE014300) circular 161,613 43.7 184 149 - - - 35 genome Shewanella pealeana ATCC 700345 chromosome [PROTEOBACTERIA] (CP000851) circular 5,174,581 44.7 4,466 4,264 34 142 3 23 genome Shewanella piezotolerans WP3 chromosome [PROTEOBACTERIA] (CP000472) circular 5,396,476 43.3 4,588 4,391 25 86 1 85 genome Shewanella putrefaciens 200 chromosome [PROTEOBACTERIA] (CP002457) circular 4,840,251 44.5 4,402 4,201 25 100 4 72 genome Shewanella putrefaciens CN-32 chromosome [PROTEOBACTERIA] (CP000681) circular 4,659,220 44.5 4,147 3,974 25 101 3 44 genome Shewanella sediminis HAW-EB3 chromosome [PROTEOBACTERIA] (CP000821) circular 5,517,674 46.1 4,711 4,513 37 126 3 32 genome

46 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Shewanella sp. 33B plasmid pSFKW33 [PROTEOBACTERIA] (FJ626843) circular 8,021 38.3 8 8 - - - - plasmid Shewanella sp. ANA-3 chromosome [PROTEOBACTERIA] (CP000469) circular 4,972,204 48.1 4,325 4,150 28 104 4 39 genome Shewanella sp. ANA-3 plasmid1 [PROTEOBACTERIA] (CP000470) circular 278,942 45.7 267 258 - - - 9 genome Shewanella sp. MR-4 chromosome [PROTEOBACTERIA] (CP000446) circular 4,706,287 47.9 4,110 3,955 28 101 3 23 genome Shewanella sp. MR-7 chromosome [PROTEOBACTERIA] (CP000444) circular 4,792,610 47.9 4,212 4,053 28 103 3 25 genome Shewanella sp. MR-7 plasmid1 [PROTEOBACTERIA] (CP000445) circular 6,499 43.1 10 10 - - - - genome Shewanella sp. W3-18-1 chromosome [PROTEOBACTERIA] (CP000503) circular 4,708,380 44.6 4,255 4,078 25 100 3 49 genome Shewanella violacea DSS12 chromosome [PROTEOBACTERIA] (AP011177) circular 4,962,103 44.7 4,117 3,873 43 126 1 73 genome Shewanella woodyi ATCC 51908 chromosome [PROTEOBACTERIA] (CP000961) circular 5,935,403 43.7 5,069 4,858 31 125 6 48 genome Shigella boydii CDC 3083-94 chromosome [PROTEOBACTERIA] (CP001063) circular 4,615,997 51.3 5,110 4,532 22 100 - 455 genome Shigella boydii CDC 3083-94 plasmid pBS512_211 [PROTEOBACTERIA] (CP001062) circular 210,919 46.1 272 247 - - - 25 genome Shigella boydii CDC 3083-94 plasmid pBS512_33 [PROTEOBACTERIA] (CP001059) circular 33,103 41.4 45 45 - - - - genome Shigella boydii CDC 3083-94 plasmid pBS512_5 [PROTEOBACTERIA] (CP001060) circular 5,114 46.4 5 5 - - - - genome Shigella boydii Sb227 chromosome [PROTEOBACTERIA] (CP000036) circular 4,519,823 51.2 4,919 4,391 22 91 - 411 genome Shigella boydii Sb227 plasmid pSB4_227 [PROTEOBACTERIA] (CP000037) circular 126,697 47.4 166 149 - - - 17 genome Shigella dysenteriae Sd197 chromosome [PROTEOBACTERIA] (CP000034) circular 4,369,232 51.2 4,602 4,063 22 85 - 427 genome Shigella dysenteriae Sd197 plasmid pSD1_197 [PROTEOBACTERIA] (CP000035) circular 182,726 44.8 224 223 - - - 1 genome Shigella dysenteriae Sd197 plasmid pSD197_spA [PROTEOBACTERIA] (CP000640) circular 8,953 39.7 8 8 - - - - genome Shigella flexneri 2002017 chromosome [PROTEOBACTERIA] (CP001383) circular 4,650,856 50.9 4,979 4,441 22 102 - 413 genome Shigella flexneri 2002017 plasmid pSFxv_1e [PROTEOBACTERIA] (CP001384) circular 223,364 45.9 295 260 - - - 35 genome Shigella flexneri 2002017 plasmid pSFxv_2 [PROTEOBACTERIA] (CP001385) circular 6,850 44.0 6 5 - - - 1 genome Shigella flexneri 2002017 plasmid pSFxv_3 [PROTEOBACTERIA] (CP001386) circular 6,200 52.6 5 5 - - - - genome Shigella flexneri 2002017 plasmid pSFxv_5 [PROTEOBACTERIA] (CP001388) circular 3,180 45.0 2 2 - - - - genome Shigella flexneri 2a plasmid p2457TS2 [PROTEOBACTERIA] (AY028316) circular 3,179 45.1 2 2 - - - - plasmid Shigella flexneri 2a str. 2457T chromosome [PROTEOBACTERIA] (AE014073) circular 4,599,354 50.9 4,911 4,385 22 100 - 404 genome Shigella flexneri 2a str. 301 chromosome [PROTEOBACTERIA] (AE005674) circular 4,607,202 50.9 4,522 4,053 22 97 10 337 genome Shigella flexneri 2a str. 301 plasmid pCP301 [PROTEOBACTERIA] (AF386526) circular 221,618 45.8 268 262 - - - 6 genome Shigella flexneri 5 str. 8401 chromosome [PROTEOBACTERIA] (CP000266) circular 4,574,284 50.9 4,859 4,336 22 97 - 404 genome Shigella flexneri 5a str. M90T plasmid pWR501 [PROTEOBACTERIA] (AF348706) circular 221,851 46.4 294 293 - - 1 - plasmid Shigella sonnei 53G chromosome [PROTEOBACTERIA] (HE616528) circular 4,988,504 51.0 5,223 4,778 22 96 - 327 genome Shigella sonnei 53G plasmid A [PROTEOBACTERIA] (HE616529) circular 215,774 45.2 258 228 - - - 30 genome Shigella sonnei 53G plasmid B [PROTEOBACTERIA] (HE616530) circular 5,153 45.7 6 6 - - - - genome Shigella sonnei 53G plasmid E [PROTEOBACTERIA] (HE616532) circular 8,953 39.7 11 8 - - - 3 genome Shigella sonnei plasmid pEG356 [PROTEOBACTERIA] (FN594520) circular 70,275 52.3 102 88 - - - 14 plasmid Shigella sonnei Ss046 chromosome [PROTEOBACTERIA] (CP000038) circular 4,825,265 51.0 5,030 4,563 22 97 - 348 genome Shigella sonnei Ss046 plasmid pSS_046 [PROTEOBACTERIA] (CP000039) circular 214,396 45.3 260 229 - - - 31 genome Shigella sonnei Ss046 plasmid pSS046_spB [PROTEOBACTERIA] (CP000642) circular 5,153 45.8 6 6 - - - - genome Shimwella (Escherichia) blattae DSM 4481 chromosome [PROTEOBACTERIA] (CP001560) circular 4,158,725 56.5 3,884 3,743 25 88 1 27 genome Sideroxydans lithotrophicus ES-1 chromosome [PROTEOBACTERIA] (CP001965) circular 3,003,656 57.5 2,985 2,908 6 45 2 24 genome Simiduia agarivorans SA1 = DSM 21679 chromosome [PROTEOBACTERIA] (CP003746) circular 4,300,227 55.8 3,837 3,733 9 41 1 53 genome Simkania negevensis Z chromosome [CHLAMYDIAE] (FR872582) circular 2,496,337 41.8 2,274 2,218 3 35 1 17 genome Simkania negevensis Z plasmid pSn [CHLAMYDIAE] (FR872581) circular 132,038 38.3 128 128 - - - - genome Slackia heliotrinireducens DSM 20476 chromosome [ACTINOBACTERIA] (CP001684) circular 3,165,038 60.2 2,810 2,697 6 48 2 57 genome Sodalis glossinidius plasmid pSG1 [PROTEOBACTERIA] (AJ868433) circular 81,553 49.1 91 66 - - - 25 plasmid Sodalis glossinidius plasmid pSG1 [PROTEOBACTERIA] (AJ868434) circular 81,553 49.1 91 66 - - - 25 plasmid Sodalis glossinidius plasmid pSG2 [PROTEOBACTERIA] (AJ868435) circular 27,240 44.7 31 27 - - - 4 plasmid Sodalis glossinidius plasmid pSG2 [PROTEOBACTERIA] (AJ868436) circular 27,240 44.7 31 27 - - - 4 plasmid Sodalis glossinidius plasmid pSG3 [PROTEOBACTERIA] (AJ868437) circular 19,201 50.7 25 23 - - - 2 plasmid Sodalis glossinidius plasmid pSG4 [PROTEOBACTERIA] (AJ868438) circular 10,816 47.8 13 6 - - - 7 plasmid Sodalis glossinidius plasmid pSG4 [PROTEOBACTERIA] (AJ868439) circular 10,816 47.8 13 9 - - - 4 plasmid Sodalis glossinidius str. morsitans chromosome [PROTEOBACTERIA] (AP008232) circular 4,171,146 54.7 4,546 3,454 22 72 1 997 genome Sodalis glossinidius str. morsitans plasmid pSG1 [PROTEOBACTERIA] (AP008233) circular 83,306 48.9 101 80 - - - 21 genome Sodalis glossinidius str. morsitans plasmid pSG2 [PROTEOBACTERIA] (AP008234) circular 27,240 44.7 32 27 - - - 5 genome Sodalis glossinidius str. morsitans plasmid pSG3 [PROTEOBACTERIA] (AP008235) circular 10,810 47.8 12 11 - - - 1 genome Solibacillus silvestris StLB046 chromosome [FIRMICUTES] (AP012157) circular 3,969,327 38.6 3,959 3,788 36 97 - 38 genome Solibacillus silvestris StLB046 plasmid pSSIL1 [FIRMICUTES] (AP012158) circular 14,902 36.0 12 12 - - - - genome Solitalea canadensis DSM 3403 chromosome [BACTEROIDETES] (CP003349) circular 5,202,069 37.3 4,406 4,277 12 59 2 56 genome Sorangium cellulosum So ce56 chromosome [PROTEOBACTERIA] (AM746676) circular 13,033,779 71.4 9,524 9,326 12 61 1 124 genome Sphaerobacter thermophilus DSM 20745 chromosome1 [CHLOROFLEXI] (CP001823) circular 2,741,033 68.1 2,465 2,385 3 47 2 28 genome Sphaerobacter thermophilus DSM 20745 chromosome2 [CHLOROFLEXI] (CP001824) circular 1,252,731 68.1 1,042 1,018 3 3 - 18 genome Sphaerochaeta coccoides DSM 17374 chromosome [SPIROCHAETAE] (CP002659) circular 2,227,296 50.6 1,907 1,820 9 47 2 29 genome Sphaerochaeta globosa Buddy chromosome [SPIROCHAETAE] (CP002541) circular 3,316,466 48.9 3,096 3,019 14 48 2 13 genome Sphaerochaeta pleomorpha Grapes chromosome [SPIROCHAETAE] (CP003155) circular 3,590,853 46.2 3,269 3,188 15 49 3 14 genome Sphingobacterium sp. 21 chromosome [BACTEROIDETES] (CP002584) circular 6,226,409 41.1 5,202 5,084 12 50 2 54 genome Sphingobium chlorophenolicum L-1 chromosome 1 [PROTEOBACTERIA] (CP002798) circular 3,080,818 63.9 2,915 2,824 3 49 2 37 genome Sphingobium chlorophenolicum L-1 chromosome 2 [PROTEOBACTERIA] (CP002799) circular 1,368,670 63.6 1,141 1,090 6 8 - 37 genome Sphingobium chlorophenolicum L-1 plasmid pSPHCH01 [PROTEOBACTERIA] (CP002800) circular 123,733 64.8 124 122 - - - 2 genome Sphingobium chungbukense plasmid pSY2 [PROTEOBACTERIA] (JN180627) circular 18,779 59.5 22 22 - - - - plasmid Sphingobium japonicum UT26S chromosome 1 [PROTEOBACTERIA] (AP010803) circular 3,514,822 64.8 3,337 3,257 3 52 3 22 genome Sphingobium japonicum UT26S chromosome 2 [PROTEOBACTERIA] (AP010804) circular 681,892 65.9 571 558 6 4 - 3 genome Sphingobium japonicum UT26S plasmid pCHQ1 [PROTEOBACTERIA] (AP010805) circular 190,974 63.0 200 195 - - - 5 genome Sphingobium japonicum UT26S plasmid pUT1 [PROTEOBACTERIA] (AP010806) circular 31,776 63.7 38 36 - - - 2 genome Sphingobium japonicum UT26S plasmid pUT2 [PROTEOBACTERIA] (AP010807) circular 5,398 61.0 7 7 - - - - genome Sphingobium sp. SYK-6 chromosome [PROTEOBACTERIA] (AP012222) circular 4,199,332 65.6 3,873 3,755 6 50 2 60 genome Sphingobium sp. SYK-6 plasmid pSLPG [PROTEOBACTERIA] (AP012223) circular 148,801 64.4 147 144 - - - 3 genome Sphingobium xenophagum QYY plasmid pSx-Qyy [PROTEOBACTERIA] (AY787146) circular 5,683 56.2 4 4 - - - - plasmid Sphingobium yanoikuyae plasmid pYAN-1 [PROTEOBACTERIA] (AB265740) circular 5,182 62.0 1 1 - - - - plasmid Sphingomonas sp. A1 plasmid pA1 [PROTEOBACTERIA] (AB231906) circular 46,557 65.3 49 49 - - - - plasmid Sphingomonas sp. KA1 plasmid pCAR3 [PROTEOBACTERIA] (AB270530) circular 254,797 62.9 263 263 - - - - plasmid Sphingomonas wittichii RW1 chromosome [PROTEOBACTERIA] (CP000699) circular 5,382,261 68.4 4,926 4,852 6 48 3 17 genome Sphingomonas wittichii RW1 pSWIT01 [PROTEOBACTERIA] (CP000700) circular 310,228 64.1 294 285 - - - 9 genome Sphingomonas wittichii RW1 pSWIT02 [PROTEOBACTERIA] (CP000701) circular 222,757 61.2 198 180 - - - 18 genome Sphingopyxis alaskensis RB2256 chromosome [PROTEOBACTERIA] (CP000356) circular 3,345,170 65.5 3,225 3,147 3 45 1 29 genome Sphingopyxis macrogoltabida plasmid pSM103mini [PROTEOBACTERIA] (AB534719) circular 4,328 57.5 5 5 - - - - plasmid Spirochaeta africana DSM 8902 chromosome [SPIROCHAETAE] (CP003282) circular 3,285,855 57.8 2,839 2,748 9 46 2 34 genome Spirochaeta caldaria DSM 7334 chromosome [SPIROCHAETAE] (CP002868) circular 3,239,340 45.6 2,911 2,826 9 48 2 26 genome Spirochaeta smaragdinae DSM 11293 chromosome [SPIROCHAETAE] (CP002116) circular 4,653,970 49.0 4,331 4,258 6 48 2 16 genome

47 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Spirochaeta thermophila DSM 6192 chromosome [SPIROCHAETAE] (CP001698) circular 2,472,645 61.9 2,260 2,195 6 46 1 12 genome Spirochaeta thermophila DSM 6578 chromosome [SPIROCHAETAE] (CP002903) circular 2,560,222 60.9 2,344 2,258 6 46 2 32 genome citri plasmid pBJS-O [TENERICUTES] (AJ972409) circular 13,374 28.9 10 10 - - - - plasmid Spiroplasma citri plasmid pSci1 [TENERICUTES] (AJ969069) circular 12,989 28.7 12 12 - - - - plasmid Spiroplasma citri plasmid pSci2 [TENERICUTES] (AJ969070) circular 14,407 29.0 12 10 - - - 2 plasmid Spiroplasma citri plasmid pSci3 [TENERICUTES] (AJ969071) circular 19,325 27.8 16 14 - - - 2 plasmid Spiroplasma citri plasmid pSci4 [TENERICUTES] (AJ969072) circular 20,224 28.6 19 17 - - - 2 plasmid Spiroplasma citri plasmid pSci5 [TENERICUTES] (AJ969073) circular 27,778 27.0 26 24 - - - 2 plasmid Spiroplasma citri plasmid pSci6 [TENERICUTES] (AJ969074) circular 35,318 25.6 37 25 - - - 12 plasmid Spiroplasma citri plasmid pSciA [TENERICUTES] (AJ966734) circular 7,790 21.3 8 8 - - - - plasmid Spiroplasma kunkelii CR2-3x plasmid pSKU146 [TENERICUTES] (AY528560) circular 14,615 28.1 18 18 - - - - plasmid Spirosoma linguale DSM 74 chromosome [BACTEROIDETES] (CP001769) circular 8,078,757 50.2 6,701 6,524 11 46 3 117 genome Spirosoma linguale DSM 74 plasmid pSLIN01 [BACTEROIDETES] (CP001770) circular 189,452 49.2 185 177 - - - 8 genome Spirosoma linguale DSM 74 plasmid pSLIN02 [BACTEROIDETES] (CP001771) circular 146,936 51.3 147 142 - - - 5 genome Spirosoma linguale DSM 74 plasmid pSLIN03 [BACTEROIDETES] (CP001772) circular 36,434 44.3 41 40 - - - 1 genome Spirosoma linguale DSM 74 plasmid pSLIN04 [BACTEROIDETES] (CP001773) circular 9,965 47.8 15 14 - 1 - - genome Spirosoma linguale DSM 74 plasmid pSLIN05 [BACTEROIDETES] (CP001774) circular 8,651 44.2 12 12 - - - - genome Spirosoma linguale DSM 74 plasmid pSLIN06 [BACTEROIDETES] (CP001775) circular 7,683 47.3 11 10 - 1 - - genome Spirosoma linguale DSM 74 plasmid pSLIN07 [BACTEROIDETES] (CP001776) circular 7,308 47.6 12 11 - 1 - - genome Spirosoma linguale DSM 74 plasmid pSLIN08 [BACTEROIDETES] (CP001777) circular 6,072 48.0 8 8 - - - - genome Stackebrandtia nassauensis DSM 44728 chromosome [ACTINOBACTERIA] (CP001778) circular 6,841,557 68.1 6,405 6,229 6 46 2 122 genome Staphylococcus argenteus MSHR1132 chromosome [FIRMICUTES] (FR821777) circular 2,762,785 32.4 2,681 2,536 16 57 - 72 genome Staphylococcus argenteus MSHR1132 plasmid pST75 [FIRMICUTES] (FR821778) circular 24,853 28.5 21 20 - - - 1 genome Staphylococcus aureus 04-02981 chromosome [FIRMICUTES] (CP001844) circular 2,821,452 32.9 2,861 2,750 17 61 - 33 genome Staphylococcus aureus 08BA02176 chromosome [FIRMICUTES] (CP003808) circular 2,782,313 32.9 2,768 2,626 17 57 - 68 genome Staphylococcus aureus aureus 11819-97 chromosome [FIRMICUTES] (CP003194) circular 2,846,546 32.9 2,892 2,770 16 58 - 48 genome Staphylococcus aureus aureus 11819-97 plasmid p11819-97 [FIRMICUTES] (CP003193) linear 22,317 29.1 22 21 - - - 1 genome Staphylococcus aureus aureus 71193 chromosome [FIRMICUTES] (CP003045) circular 2,715,000 32.9 2,710 2,574 18 56 - 62 genome Staphylococcus aureus aureus COL chromosome [FIRMICUTES] (CP000046) circular 2,809,422 32.8 2,860 2,764 19 52 1 24 genome Staphylococcus aureus aureus COL plasmid pT181 [FIRMICUTES] (CP000045) linear 4,440 30.0 3 3 - - - - genome Staphylococcus aureus aureus ECT-R 2 chromosome [FIRMICUTES] (FR714927) circular 2,729,540 32.9 2,743 2,630 16 59 - 38 genome Staphylococcus aureus aureus ECT-R 2 plasmid pLUH02 [FIRMICUTES] (FR714929) circular 27,271 27.2 27 27 - - - - genome Staphylococcus aureus aureus ED133 chromosome [FIRMICUTES] (CP001996) circular 2,832,478 32.9 2,892 2,740 16 58 - 78 genome Staphylococcus aureus aureus ED98 chromosome [FIRMICUTES] (CP001781) circular 2,824,404 32.8 2,879 2,751 16 59 2 51 genome Staphylococcus aureus aureus ED98 plasmid pAVX [FIRMICUTES] (CP001784) circular 17,256 29.0 20 18 - - - 2 genome Staphylococcus aureus aureus ED98 plasmid pT181 [FIRMICUTES] (CP001783) circular 4,440 30.1 4 3 - - 1 - genome Staphylococcus aureus aureus HO 5096 0412 chromosome [FIRMICUTES] (HE681097) circular 2,832,299 32.8 2,863 2,720 19 59 - 65 genome Staphylococcus aureus aureus JH1 chromosome [FIRMICUTES] (CP000736) circular 2,906,507 33.0 2,976 2,863 19 59 1 34 genome Staphylococcus aureus aureus JH1 plasmid pSJH101 [FIRMICUTES] (CP000737) circular 30,429 29.6 30 29 - - - 1 genome Staphylococcus aureus aureus JH9 chromosome [FIRMICUTES] (CP000703) circular 2,906,700 32.9 2,975 2,860 19 58 2 36 genome Staphylococcus aureus aureus JH9 plasmid pSJH901 [FIRMICUTES] (CP000704) circular 30,429 29.6 30 30 - - - - genome Staphylococcus aureus aureus JKD6008 chromosome [FIRMICUTES] (CP002120) circular 2,924,344 32.9 3,020 2,879 16 82 - 43 genome Staphylococcus aureus aureus JKD6159 chromosome [FIRMICUTES] (CP002114) circular 2,811,435 32.8 2,821 2,672 16 55 - 78 genome Staphylococcus aureus aureus JKD6159 plasmid pSaa6159 [FIRMICUTES] (CP002115) circular 20,730 28.4 24 23 - - - 1 genome Staphylococcus aureus aureus LGA251 chromosome [FIRMICUTES] (FR821779) circular 2,750,834 33.0 2,748 2,591 19 59 - 79 genome Staphylococcus aureus aureus M013 chromosome [FIRMICUTES] (CP003166) circular 2,788,636 32.9 2,785 2,607 16 58 - 104 genome Staphylococcus aureus aureus MRSA252 chromosome [FIRMICUTES] (BX571856) circular 2,902,619 32.8 2,927 2,781 16 59 - 71 genome Staphylococcus aureus aureus MSSA476 chromosome [FIRMICUTES] (BX571857) circular 2,799,802 32.9 2,820 2,709 19 59 - 33 genome Staphylococcus aureus aureus MSSA476 plasmid pSAS [FIRMICUTES] (BX571858) circular 20,652 28.4 24 23 - - - 1 genome Staphylococcus aureus aureus Mu3 chromosome [FIRMICUTES] (AP009324) circular 2,880,168 32.9 2,927 2,812 16 59 - 40 genome Staphylococcus aureus aureus Mu50 chromosome [FIRMICUTES] (BA000017) circular 2,878,529 32.9 2,927 2,812 16 59 - 40 genome Staphylococcus aureus aureus Mu50 plasmidVRSAp [FIRMICUTES] (AP003367) circular 25,107 28.9 29 25 - - - 4 genome Staphylococcus aureus aureus MW2 chromosome [FIRMICUTES] (BA000033) circular 2,820,462 32.8 2,846 2,740 19 59 - 28 genome Staphylococcus aureus aureus N315 chromosome [FIRMICUTES] (BA000018) circular 2,814,816 32.8 2,833 2,714 16 61 - 42 genome Staphylococcus aureus aureus N315 plasmid pN315 [FIRMICUTES] (AP003139) circular 24,653 28.7 28 28 - - - - genome Staphylococcus aureus aureus NCTC 8325 chromosome [FIRMICUTES] (CP000253) circular 2,821,361 32.9 2,872 2,767 16 61 - 30 genome Staphylococcus aureus aureus Newman chromosome [FIRMICUTES] (AP009351) circular 2,878,897 32.9 2,990 2,894 16 59 - 21 genome Staphylococcus aureus aureus ST398 chromosome [FIRMICUTES] (AM990992) circular 2,872,582 32.9 2,905 2,747 18 59 - 81 genome Staphylococcus aureus aureus ST398 plasmid pKKS825 [FIRMICUTES] (FN377602) circular 14,362 33.2 9 9 - - - - plasmid Staphylococcus aureus aureus ST398 plasmid pS0385-1 [FIRMICUTES] (AM990993) circular 5,246 30.7 4 3 - - - 1 genome Staphylococcus aureus aureus ST398 plasmid pS0385-2 [FIRMICUTES] (AM990994) circular 4,381 31.6 5 5 - - - - genome Staphylococcus aureus aureus T0131 chromosome [FIRMICUTES] (CP002643) circular 2,913,900 32.8 2,972 2,856 16 54 - 46 genome Staphylococcus aureus aureus TCH60 chromosome [FIRMICUTES] (CP002110) circular 2,802,675 32.9 2,798 2,631 19 59 2 87 genome Staphylococcus aureus aureus TCH60 plasmid unnamed [FIRMICUTES] (CP002111) circular 24,491 28.2 24 24 - - - - genome Staphylococcus aureus aureus TW20 chromosome [FIRMICUTES] (FN433596) circular 3,043,210 32.8 3,130 3,009 16 60 - 45 genome Staphylococcus aureus aureus TW20 plasmid pTW20_1 [FIRMICUTES] (FN433597) circular 29,585 32.9 31 30 - - - 1 genome Staphylococcus aureus aureus USA300_FPR3757 chromosome [FIRMICUTES] (CP000255) circular 2,872,769 32.8 2,938 2,845 16 52 1 24 genome Staphylococcus aureus aureus USA300_FPR3757 plasmid pUSA02 [FIRMICUTES] (CP000257) circular 4,439 30.0 3 3 - - - - genome Staphylococcus aureus aureus USA300_FPR3757 plasmid pUSA03 [FIRMICUTES] (CP000258) circular 37,136 28.7 38 36 - - - 2 genome Staphylococcus aureus aureus USA300_TCH1516 chromosome [FIRMICUTES] (CP000730) circular 2,872,915 32.8 2,943 2,844 16 59 - 24 genome Staphylococcus aureus aureus USA300_TCH1516 plasmid pUSA300HOUMR [FIRMICUTES] (CP000731) circular 27,041 30.5 32 29 - - - 3 genome Staphylococcus aureus aureus USA300_TCH959 plasmid pUSA300HOUMS [FIRMICUTES] (CP000732) circular 20,413 28.1 20 20 - - - - plasmid Staphylococcus aureus aureus VC40 chromosome [FIRMICUTES] (CP003033) circular 2,692,570 32.8 2,723 2,611 16 59 - 37 genome Staphylococcus aureus plasmid EDINA [FIRMICUTES] (AP003089) circular 34,986 28.7 52 52 - - - - plasmid Staphylococcus aureus plasmid J3358 [FIRMICUTES] (U36910) linear 6,024 31.2 2 2 - - - - plasmid Staphylococcus aureus plasmid p18805-P03 [FIRMICUTES] (CP002132) circular 27,069 30.5 38 38 - - - - plasmid Staphylococcus aureus plasmid p18806-P03 [FIRMICUTES] (CP002134) circular 27,068 30.5 36 36 - - - - plasmid Staphylococcus aureus plasmid p18807-P03 [FIRMICUTES] (CP002135) circular 26,972 30.5 38 38 - - - - plasmid Staphylococcus aureus plasmid p18808-P03 [FIRMICUTES] (CP002137) circular 27,059 30.5 39 39 - - - - plasmid Staphylococcus aureus plasmid p18809-P03 [FIRMICUTES] (CP002139) circular 27,068 30.5 36 36 - - - - plasmid Staphylococcus aureus plasmid p18809-P04 [FIRMICUTES] (CP002146) circular 28,404 31.9 40 40 - - - - plasmid Staphylococcus aureus plasmid p18810-P03 [FIRMICUTES] (CP002141) circular 27,067 30.5 37 37 - - - - plasmid Staphylococcus aureus plasmid p18811-P03 [FIRMICUTES] (CP002143) circular 27,070 30.5 39 39 - - - - plasmid Staphylococcus aureus plasmid p18813-P03 [FIRMICUTES] (CP002145) circular 30,127 27.9 43 43 - - - - plasmid Staphylococcus aureus plasmid p19321-P01 [FIRMICUTES] (CP002148) circular 2,473 30.8 3 3 - - - - plasmid Staphylococcus aureus plasmid p19321-P03 [FIRMICUTES] (CP002147) circular 27,425 27.2 34 34 - - - - plasmid Staphylococcus aureus plasmid p21 [FIRMICUTES] (AF128883) circular 20,719 28.6 21 20 - - - - plasmid

48 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Staphylococcus aureus plasmid p9b [FIRMICUTES] (JF968542) circular 2,367 31.1 2 2 - - - - plasmid Staphylococcus aureus plasmid pBORa53 [FIRMICUTES] (AY917098) circular 17,334 28.4 14 14 - - - - plasmid Staphylococcus aureus plasmid pC194 [FIRMICUTES] (V01277) circular 2,910 29.4 4 4 - - - - plasmid Staphylococcus aureus plasmid pC221 [FIRMICUTES] (X02166) circular 4,555 31.6 4 4 - - - - plasmid Staphylococcus aureus plasmid pC221 [FIRMICUTES] (X02529) linear 4,557 31.6 4 4 - - - - plasmid Staphylococcus aureus plasmid pC223 [FIRMICUTES] (AY355285) circular 4,608 31.5 5 5 - - - - plasmid Staphylococcus aureus plasmid pCPS32 [FIRMICUTES] (FN806791) circular 5,718 34.1 3 3 - - - - plasmid Staphylococcus aureus plasmid pDLK1 [FIRMICUTES] (GU562624) circular 2,402 30.9 2 2 - - - - plasmid Staphylococcus aureus plasmid pDLK2 [FIRMICUTES] (GU562625) circular 2,908 29.4 2 2 - - - - plasmid Staphylococcus aureus plasmid pDLK3 [FIRMICUTES] (GU562626) circular 1,365 32.0 2 2 - - - - plasmid Staphylococcus aureus plasmid pE194 [FIRMICUTES] (V01278) circular 3,728 31.7 5 5 - - - - plasmid Staphylococcus aureus plasmid pETB [FIRMICUTES] (AP003088) circular 38,211 27.7 50 50 - - - - plasmid Staphylococcus aureus plasmid pGO1 [FIRMICUTES] (FM207042) circular 54,000 30.3 55 53 - - - 2 plasmid Staphylococcus aureus plasmid pKH13 [FIRMICUTES] (EU170347) circular 2,909 29.5 2 2 - - - - plasmid Staphylococcus aureus plasmid pKH15 [FIRMICUTES] (EU170348) circular 2,907 29.4 2 2 - - - - plasmid Staphylococcus aureus plasmid pKH16 [FIRMICUTES] (EU365621) circular 4,442 30.1 3 3 - - - - plasmid Staphylococcus aureus plasmid pKH17 [FIRMICUTES] (EU365622) circular 4,441 30.0 3 3 - - - - plasmid Staphylococcus aureus plasmid pKH19 [FIRMICUTES] (EU350089) circular 2,473 30.8 2 2 - - - - plasmid Staphylococcus aureus plasmid pKH20 [FIRMICUTES] (EU350090) circular 2,412 30.7 2 2 - - - - plasmid Staphylococcus aureus plasmid pKH6 [FIRMICUTES] (U38428) circular 4,439 30.1 3 3 - - - - plasmid Staphylococcus aureus plasmid pKH7 [FIRMICUTES] (U38429) linear 4,118 28.8 3 3 - - - - plasmid Staphylococcus aureus plasmid pKKS49 [FIRMICUTES] (HE611647) circular 4,809 39.4 5 5 - - - - plasmid Staphylococcus aureus plasmid pLW043 [FIRMICUTES] (AE017171) circular 57,889 30.8 61 57 - - - - plasmid Staphylococcus aureus plasmid pMW2 [FIRMICUTES] (AP004832) circular 20,654 28.4 27 27 - - - - plasmid Staphylococcus aureus plasmid pPM1 [FIRMICUTES] (AB699881) circular 25,961 29.0 23 22 - - - - plasmid Staphylococcus aureus plasmid pPR9 [FIRMICUTES] (GU237136) circular 41,715 28.3 42 42 - - - - plasmid Staphylococcus aureus plasmid pRJ6 [FIRMICUTES] (AF241888) circular 7,904 30.1 13 13 - - - - plasmid Staphylococcus aureus plasmid pS194 [FIRMICUTES] (X06627) circular 4,397 31.5 4 4 - - - - plasmid Staphylococcus aureus plasmid pSA1379 [FIRMICUTES] (AB255366) circular 22,787 29.3 21 21 - - - - plasmid Staphylococcus aureus plasmid pSK1 [FIRMICUTES] (GU565967) circular 28,150 31.0 32 28 - - - - plasmid Staphylococcus aureus plasmid pSK3 [FIRMICUTES] (U96609) linear 1,658 34.0 2 2 - - - - plasmid Staphylococcus aureus plasmid pSK41 [FIRMICUTES] (AF051917) circular 46,445 29.7 46 44 - - - 2 plasmid Staphylococcus aureus plasmid pSK6 [FIRMICUTES] (U96610) linear 1,551 33.5 2 2 - - - - plasmid Staphylococcus aureus plasmid pSK67 [FIRMICUTES] (GQ900447) circular 27,439 27.2 32 32 - - - - plasmid Staphylococcus aureus plasmid pSN2 [FIRMICUTES] (V01282) circular 1,288 36.3 1 1 - - - - plasmid Staphylococcus aureus plasmid pTZ2162 [FIRMICUTES] (AB304512) circular 35,380 29.5 44 44 - - - - plasmid Staphylococcus aureus plasmid pTZ4 [FIRMICUTES] (AB369999) circular 4,555 31.6 3 3 - - - - plasmid Staphylococcus aureus plasmid pUB101 [FIRMICUTES] (AY373761) circular 21,845 29.1 26 25 - - - - plasmid Staphylococcus aureus plasmid pUR2355 [FIRMICUTES] (JQ312422) circular 7,609 32.6 6 6 - - - - plasmid Staphylococcus aureus plasmid pUR4128 [FIRMICUTES] (JQ861960) circular 7,567 32.4 6 6 - - - - plasmid Staphylococcus aureus plasmid pV030-8 [FIRMICUTES] (EU366902) circular 39,041 28.1 17 17 - - - - plasmid Staphylococcus aureus plasmid pVGA [FIRMICUTES] (FJ207465) circular 5,713 34.1 3 3 - - - - plasmid Staphylococcus aureus plasmid pWBG1773 [FIRMICUTES] (EF537646) circular 2,916 28.8 3 3 - - - - plasmid Staphylococcus aureus plasmid pWBG738 [FIRMICUTES] (DQ088624) circular 2,473 30.9 3 3 - - - - plasmid Staphylococcus aureus plasmid pWBG744 [FIRMICUTES] (GQ900398) circular 27,268 27.2 34 34 - - - - plasmid Staphylococcus aureus plasmid pWBG747 [FIRMICUTES] (GQ900399) circular 33,701 28.2 43 43 - - - - plasmid Staphylococcus aureus plasmid pWBG750 [FIRMICUTES] (GQ900392) circular 20,653 28.4 25 25 - - - - plasmid Staphylococcus aureus plasmid pWBG751 [FIRMICUTES] (GQ900393) circular 2,473 30.8 3 3 - - - - plasmid Staphylococcus aureus plasmid pWBG752 [FIRMICUTES] (GQ900394) circular 24,654 28.7 30 30 - - - - plasmid Staphylococcus aureus plasmid pWBG757 [FIRMICUTES] (GQ900397) circular 20,730 28.4 25 25 - - - - plasmid Staphylococcus aureus plasmid pWBG763 [FIRMICUTES] (GQ900467) circular 20,730 28.4 25 25 - - - - plasmid Staphylococcus aureus plasmid pWBG764 [FIRMICUTES] (GQ900468) circular 2,397 27.8 3 3 - - - - plasmid Staphylococcus aureus plasmid SAP_008A [FIRMICUTES] (GQ900376) circular 9,968 28.4 12 12 - - - - plasmid Staphylococcus aureus plasmid SAP_012A [FIRMICUTES] (GQ900377) circular 27,267 27.2 35 35 - - - - plasmid Staphylococcus aureus plasmid SAP_013A [FIRMICUTES] (GQ900378) circular 29,254 33.7 32 32 - - - - plasmid Staphylococcus aureus plasmid SAP_014A [FIRMICUTES] (GQ900379) circular 50,429 29.9 57 57 - - - - plasmid Staphylococcus aureus plasmid SAP_016A [FIRMICUTES] (GQ900381) circular 43,807 31.1 55 55 - - - - plasmid Staphylococcus aureus plasmid SAP_017A [FIRMICUTES] (GQ900382) circular 32,650 29.8 40 40 - - - - plasmid Staphylococcus aureus plasmid SAP_018A [FIRMICUTES] (GQ900383) circular 32,487 30.5 42 42 - - - - plasmid Staphylococcus aureus plasmid SAP_018B [FIRMICUTES] (GQ900384) circular 8,226 32.4 9 9 - - - - plasmid Staphylococcus aureus plasmid SAP_019A [FIRMICUTES] (GQ900385) circular 27,435 30.7 29 29 - - - - plasmid Staphylococcus aureus plasmid SAP_020A [FIRMICUTES] (GQ900386) circular 64,909 29.1 78 78 - - - - plasmid Staphylococcus aureus plasmid SAP_026A [FIRMICUTES] (GQ900387) circular 33,660 32.4 44 44 - - - - plasmid Staphylococcus aureus plasmid SAP_027A [FIRMICUTES] (GQ900388) circular 29,646 30.5 35 35 - - - - plasmid Staphylococcus aureus plasmid SAP_028A [FIRMICUTES] (GQ900389) circular 38,204 29.9 49 49 - - - - plasmid Staphylococcus aureus plasmid SAP_029A [FIRMICUTES] (GQ900390) circular 33,702 28.2 42 42 - - - - plasmid Staphylococcus aureus plasmid SAP_031A [FIRMICUTES] (GQ900391) circular 38,087 30.1 47 47 - - - - plasmid Staphylococcus aureus plasmid SAP_034A [FIRMICUTES] (GQ900395) circular 30,047 29.8 31 31 - - - - plasmid Staphylococcus aureus plasmid SAP_040A [FIRMICUTES] (GQ900400) circular 38,045 32.2 51 51 - - - - plasmid Staphylococcus aureus plasmid SAP_041A [FIRMICUTES] (GQ900401) circular 28,384 28.5 28 28 - - - - plasmid Staphylococcus aureus plasmid SAP_045A [FIRMICUTES] (GQ900402) circular 37,564 28.0 46 46 - - - - plasmid Staphylococcus aureus plasmid SAP_047A [FIRMICUTES] (GQ900405) circular 28,974 27.9 36 36 - - - - plasmid Staphylococcus aureus plasmid SAP_052A [FIRMICUTES] (GQ900412) circular 32,445 30.9 43 43 - - - - plasmid Staphylococcus aureus plasmid SAP_055A [FIRMICUTES] (GQ900414) circular 20,453 29.1 25 25 - - - - plasmid Staphylococcus aureus plasmid SAP_057A [FIRMICUTES] (GQ900415) circular 39,308 27.7 48 48 - - - - plasmid Staphylococcus aureus plasmid SAP_060A [FIRMICUTES] (GQ900416) circular 22,987 27.3 30 30 - - - - plasmid Staphylococcus aureus plasmid SAP_060B [FIRMICUTES] (GQ900417) circular 4,498 30.1 4 4 - - - - plasmid Staphylococcus aureus plasmid SAP_063A [FIRMICUTES] (GQ900418) circular 26,016 28.2 37 37 - - - - plasmid Staphylococcus aureus plasmid SAP_064A [FIRMICUTES] (GQ900419) circular 30,857 32.1 41 41 - - - - plasmid Staphylococcus aureus plasmid SAP_068A [FIRMICUTES] (GQ900421) circular 50,500 29.3 55 55 - - - - plasmid Staphylococcus aureus plasmid SAP_069A [FIRMICUTES] (GQ900422) circular 42,198 28.7 50 50 - - - - plasmid Staphylococcus aureus plasmid SAP_076A [FIRMICUTES] (GQ900427) circular 35,114 30.3 42 42 - - - - plasmid Staphylococcus aureus plasmid SAP_077B [FIRMICUTES] (GQ900429) circular 13,342 30.1 15 15 - - - - plasmid Staphylococcus aureus plasmid SAP_079A [FIRMICUTES] (GQ900432) circular 47,322 28.8 53 53 - - - - plasmid Staphylococcus aureus plasmid SAP_080A [FIRMICUTES] (GQ900433) circular 43,892 29.2 49 49 - - - - plasmid Staphylococcus aureus plasmid SAP_082A [FIRMICUTES] (GQ900434) circular 44,116 29.2 49 49 - - - - plasmid Staphylococcus aureus plasmid SAP_083A [FIRMICUTES] (GQ900435) circular 21,806 37.6 27 27 - - - - plasmid

49 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Staphylococcus aureus plasmid SAP_085B [FIRMICUTES] (GQ900438) circular 3,961 32.6 4 4 - - - - plasmid Staphylococcus aureus plasmid SAP_087A [FIRMICUTES] (GQ900439) circular 2,396 27.8 3 3 - - - - plasmid Staphylococcus aureus plasmid SAP_095A [FIRMICUTES] (GQ900444) circular 23,983 33.7 29 29 - - - - plasmid Staphylococcus aureus plasmid SAP_096A [FIRMICUTES] (GQ900446) circular 22,694 34.7 27 27 - - - - plasmid Staphylococcus aureus plasmid SAP_099A [FIRMICUTES] (GQ900448) circular 45,052 29.0 59 59 - - - - plasmid Staphylococcus aureus plasmid SAP_099B [FIRMICUTES] (GQ900449) circular 16,428 29.7 22 22 - - - - plasmid Staphylococcus aureus plasmid SAP_104B [FIRMICUTES] (GQ900451) circular 1,552 33.5 2 2 - - - - plasmid Staphylococcus aureus plasmid SAP_105A [FIRMICUTES] (GQ900452) circular 26,236 32.7 36 36 - - - - plasmid Staphylococcus aureus plasmid SAP_105B [FIRMICUTES] (GQ900453) circular 16,775 27.4 18 18 - - - - plasmid Staphylococcus aureus plasmid SAP_106A [FIRMICUTES] (GQ900454) circular 38,556 27.7 41 41 - - - - plasmid Staphylococcus aureus plasmid SAP_106B [FIRMICUTES] (GQ900455) circular 8,435 32.7 12 12 - - - - plasmid Staphylococcus aureus plasmid SAP_107A [FIRMICUTES] (GQ900456) circular 42,623 32.3 39 39 - - - - plasmid Staphylococcus aureus plasmid SAP_107B [FIRMICUTES] (GQ900457) circular 10,445 29.9 16 16 - - - - plasmid Staphylococcus aureus plasmid SAP_108A [FIRMICUTES] (GQ900458) circular 24,518 29.1 26 26 - - - - plasmid Staphylococcus aureus plasmid SAP_108B [FIRMICUTES] (GQ900459) circular 6,206 31.8 7 7 - - - - plasmid Staphylococcus aureus plasmid SAP_108C [FIRMICUTES] (GQ900460) circular 4,572 32.7 6 6 - - - - plasmid Staphylococcus aureus plasmid SAP_109A [FIRMICUTES] (GQ900462) circular 23,263 30.4 26 26 - - - - plasmid Staphylococcus aureus plasmid SAP_109B [FIRMICUTES] (GQ900463) circular 4,607 31.5 6 6 - - - - plasmid Staphylococcus aureus plasmid SAP_110A [FIRMICUTES] (GQ900465) circular 24,711 29.1 25 25 - - - - plasmid Staphylococcus aureus plasmid SAP_110B [FIRMICUTES] (GQ900466) circular 6,794 30.1 9 9 - - - - plasmid Staphylococcus aureus plasmid SAP015A [FIRMICUTES] (GQ900380) circular 27,068 30.5 36 36 - - - - plasmid Staphylococcus aureus plasmid SAP046A [FIRMICUTES] (GQ900403) circular 27,068 30.5 36 36 - - - - plasmid Staphylococcus aureus plasmid SAP048A [FIRMICUTES] (GQ900406) circular 27,268 27.2 34 34 - - - - plasmid Staphylococcus aureus plasmid SAP049A [FIRMICUTES] (GQ900407) circular 25,022 30.6 34 34 - - - - plasmid Staphylococcus aureus plasmid SAP050A [FIRMICUTES] (GQ900409) circular 27,067 30.5 37 37 - - - - plasmid Staphylococcus aureus plasmid SAP051A [FIRMICUTES] (GQ900410) circular 23,059 30.4 30 30 - - - - plasmid Staphylococcus aureus plasmid SAP053A [FIRMICUTES] (GQ900413) circular 20,672 28.4 27 27 - - - - plasmid Staphylococcus aureus plasmid SAP065A [FIRMICUTES] (GQ900420) circular 2,908 29.4 3 3 - - - - plasmid Staphylococcus aureus plasmid SAP072A [FIRMICUTES] (GQ900424) circular 20,653 28.4 25 25 - - - - plasmid Staphylococcus aureus plasmid SAP073A [FIRMICUTES] (GQ900425) circular 20,729 28.4 25 25 - - - - plasmid Staphylococcus aureus plasmid SAP074A [FIRMICUTES] (GQ900426) circular 27,268 27.2 33 33 - - - - plasmid Staphylococcus aureus plasmid SAP077A [FIRMICUTES] (GQ900428) circular 35,510 30.4 43 43 - - - - plasmid Staphylococcus aureus plasmid SAP078A [FIRMICUTES] (GQ900430) circular 35,508 30.4 43 43 - - - - plasmid Staphylococcus aureus plasmid SAP078B [FIRMICUTES] (GQ900431) circular 2,415 30.9 2 2 - - - - plasmid Staphylococcus aureus plasmid SAP084A [FIRMICUTES] (GQ900436) circular 4,595 31.5 5 5 - - - - plasmid Staphylococcus aureus plasmid SAP085A [FIRMICUTES] (GQ900437) circular 4,439 30.1 3 3 - - - - plasmid Staphylococcus aureus plasmid SAP089A [FIRMICUTES] (GQ900440) circular 4,595 31.5 5 5 - - - - plasmid Staphylococcus aureus plasmid SAP093A [FIRMICUTES] (GQ900441) circular 4,439 30.1 3 3 - - - - plasmid Staphylococcus aureus plasmid SAP093B [FIRMICUTES] (GQ900442) circular 1,290 20.9 1 1 - - - - plasmid Staphylococcus aureus plasmid SAP094A [FIRMICUTES] (GQ900443) circular 4,439 30.1 3 3 - - - - plasmid Staphylococcus aureus plasmid SAP095B [FIRMICUTES] (GQ900445) circular 4,439 30.0 3 3 - - - - plasmid Staphylococcus aureus RF122 chromosome [FIRMICUTES] (AJ938182) circular 2,742,531 32.8 2,788 2,560 16 60 - 152 genome Staphylococcus carnosus carnosus TM300 chromosome [FIRMICUTES] (AM295250) linear 2,566,424 34.6 2,491 2,357 15 58 - 61 genome Staphylococcus chromogenes plasmid pLNU1 [FIRMICUTES] (AM184099) circular 2,361 29.3 2 2 - - - - plasmid Staphylococcus chromogenes plasmid pLNU9 [FIRMICUTES] (AM399082) circular 3,783 29.5 3 3 - - - - plasmid Staphylococcus epidermidis ATCC 12228 chromosome [FIRMICUTES] (AE015929) circular 2,499,279 32.1 2,492 2,416 16 60 - - genome Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-01 [FIRMICUTES] (AE015930) circular 4,439 30.1 3 3 - - - - genome Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-02 [FIRMICUTES] (AE015931) circular 4,679 31.8 6 6 - - - - genome Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-03 [FIRMICUTES] (AE015932) circular 8,007 35.6 8 8 - - - - genome Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-04 [FIRMICUTES] (AE015933) circular 17,261 28.0 16 16 - - - - genome Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-05 [FIRMICUTES] (AE015934) circular 24,365 29.3 22 22 - - - - genome Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-06 [FIRMICUTES] (AE015935) circular 6,585 31.5 11 11 - - - - genome Staphylococcus epidermidis plasmid pSepCH [FIRMICUTES] (AY092027) circular 2,391 29.0 3 3 - - - - plasmid Staphylococcus epidermidis plasmid pSK639 [FIRMICUTES] (U40259) circular 8,013 33.8 11 11 - - - - plasmid Staphylococcus epidermidis RP62A chromosome [FIRMICUTES] (CP000029) circular 2,616,530 32.2 2,459 2,359 19 59 - 22 genome Staphylococcus epidermidis RP62A plasmid pSERP [FIRMICUTES] (CP000028) circular 27,310 31.9 34 32 - - - 2 genome Staphylococcus haemolyticus JCSC1435 chromosome [FIRMICUTES] (AP006716) circular 2,685,015 32.8 2,580 2,457 16 60 - 47 genome Staphylococcus haemolyticus JCSC1435 plasmid pSHaeB [FIRMICUTES] (AP006718) circular 2,366 31.1 2 2 - - - - genome Staphylococcus haemolyticus JCSC1435 plasmid pSHaeC [FIRMICUTES] (AP006719) circular 8,180 30.3 9 9 - - - - genome Staphylococcus hyicus plasmid pKKS966 [FIRMICUTES] (FN677368) circular 4,957 36.1 5 5 - - - - plasmid Staphylococcus lentus plasmid pSTE2 [FIRMICUTES] (AJ888003) circular 6,913 30.4 5 5 - - - - plasmid Staphylococcus lugdunensis HKU09-01 chromosome [FIRMICUTES] (CP001837) circular 2,658,366 33.9 2,513 2,410 19 60 - 24 genome Staphylococcus lugdunensis N920143 chromosome [FIRMICUTES] (FR870271) circular 2,595,888 33.8 2,460 2,359 14 56 - 31 genome Staphylococcus lugdunensis plasmid pLUG10 [FIRMICUTES] (U74623) circular 3,117 29.6 3 3 - - - - plasmid Staphylococcus pasteuri plasmid pSP187 [FIRMICUTES] (AM040731) circular 5,550 28.3 7 7 - - - - plasmid Staphylococcus pseudintermedius ED99 chromosome [FIRMICUTES] (CP002478) circular 2,572,216 37.6 2,386 2,275 16 58 4 33 genome Staphylococcus pseudintermedius HKU10-03 chromosome [FIRMICUTES] (CP002439) circular 2,617,381 37.5 2,477 2,366 19 59 - 33 genome Staphylococcus saprophyticus saprophyticus ATCC 15305 chromosome [FIRMICUTES] (AP008934) circular 2,516,575 33.2 2,438 2,292 19 58 - 69 genome Staphylococcus saprophyticus saprophyticus ATCC 15305 plasmid pSSP1 [FIRMICUTES] (AP008935) circular 38,454 30.8 40 39 - - - 1 genome Staphylococcus saprophyticus saprophyticus ATCC 15305 plasmid pSSP2 [FIRMICUTES] (AP008936) circular 22,870 31.3 21 19 - - - 2 genome Staphylococcus saprophyticus saprophyticus plasmid pSSAP1 [FIRMICUTES] (FR687301) circular 66,104 32.4 54 45 - - - 9 plasmid Staphylococcus saprophyticus saprophyticus plasmid pSSAP2 [FIRMICUTES] (HE616681) circular 36,907 29.9 41 35 - - - 6 plasmid Staphylococcus sciuri plasmid pC194-like [FIRMICUTES] (EU602348) circular 2,908 29.4 4 4 - - - - plasmid Staphylococcus sciuri plasmid pSCFS1 [FIRMICUTES] (AJ579365) linear 17,108 34.0 14 14 - - - - plasmid Staphylococcus sciuri sciuri plasmid pACK6 [FIRMICUTES] (AF093750) circular 4,431 28.1 4 3 - 1 - - plasmid Staphylococcus simulans bv. staphylolyticus plasmid pACK1 [FIRMICUTES] (GU228571) circular 55,171 31.4 49 49 - - - - plasmid Staphylococcus simulans bv. staphylolyticus plasmid pACK2 [FIRMICUTES] (HQ170520) circular 37,683 32.3 19 19 - - - - plasmid Staphylococcus simulans bv. staphylolyticus plasmid pACK3 [FIRMICUTES] (GU228572) circular 28,613 31.4 26 26 - - - - plasmid Staphylococcus simulans bv. staphylolyticus plasmid pACK4 [FIRMICUTES] (EU930825) circular 3,592 36.0 4 4 - - - - plasmid Staphylococcus simulans bv. staphylolyticus plasmid pACK5 [FIRMICUTES] (HQ170521) circular 3,191 29.8 3 3 - - - - plasmid Staphylococcus sp. 693-2 plasmid pLEW6932 [FIRMICUTES] (DQ390456) circular 51,514 31.5 56 56 - - - - plasmid Staphylococcus warneri plasmid pPI-1 [FIRMICUTES] (AB125341) circular 30,201 28.7 33 32 - - - - plasmid Staphylococcus warneri plasmid pPI-2 [FIRMICUTES] (AB125342) circular 2,779 29.5 3 3 - - - - plasmid Staphylococcus warneri plasmid pSW174 [FIRMICUTES] (AM040729) circular 5,767 29.9 6 2 - - - 4 plasmid Staphylococcus warneri plasmid pSW49 [FIRMICUTES] (AM040730) circular 3,552 30.8 4 2 - - - 2 plasmid Starkeya novella DSM 506 chromosome [PROTEOBACTERIA] (CP002026) circular 4,765,023 67.9 4,477 4,359 3 46 2 67 genome Stenotrophomonas maltophilia D457 chromosome [PROTEOBACTERIA] (HE798556) circular 4,769,156 66.8 4,381 4,220 13 73 23 52 genome

50 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Stenotrophomonas maltophilia JV3 chromosome [PROTEOBACTERIA] (CP002986) circular 4,544,477 66.9 4,128 4,022 13 74 2 17 genome Stenotrophomonas maltophilia K279a chromosome [PROTEOBACTERIA] (AM743169) circular 4,851,126 66.3 4,458 4,328 12 74 1 43 genome Stenotrophomonas maltophilia plasmid pSM76 [PROTEOBACTERIA] (EF535851) circular 2,927 63.9 4 4 - - - - plasmid Stenotrophomonas maltophilia R551-3 chromosome [PROTEOBACTERIA] (CP001111) circular 4,573,969 66.3 4,112 4,011 13 73 2 13 genome Stigmatella aurantiaca DW4/3-1 chromosome [PROTEOBACTERIA] (CP002271) circular 10,260,756 67.5 8,213 8,112 6 49 1 45 genome Streptobacillus moniliformis DSM 12112 chromosome [FUSOBACTERIA] (CP001779) circular 1,662,578 26.3 1,525 1,437 16 39 2 31 genome Streptococcus agalactiae 2603V/R chromosome [FIRMICUTES] (AE009948) circular 2,160,267 35.6 2,279 2,127 21 80 - - genome Streptococcus agalactiae A909 chromosome [FIRMICUTES] (CP000114) circular 2,127,839 35.6 2,150 2,026 21 80 1 22 genome Streptococcus agalactiae GD201008-001 chromosome [FIRMICUTES] (CP003810) circular 2,063,112 35.6 2,059 1,940 21 77 - 21 genome Streptococcus agalactiae NEM316 chromosome [FIRMICUTES] (AL732656) linear 2,211,485 35.6 2,217 2,103 21 80 - 13 genome Streptococcus agalactiae plasmid pGB354 [FIRMICUTES] (U83488) circular 6,437 32.9 5 5 - - - - plasmid Streptococcus agalactiae plasmid pGB3631 [FIRMICUTES] (X72021) circular 5,842 33.6 8 6 - - - - plasmid Streptococcus agalactiae SA20-06 chromosome [FIRMICUTES] (CP003919) circular 1,820,886 35.6 1,859 1,646 21 79 - 113 genome Streptococcus dysgalactiae equisimilis AC-2713 chromosome [FIRMICUTES] (HE858529) circular 2,179,445 39.5 2,114 1,952 15 57 - 89 genome Streptococcus dysgalactiae equisimilis ATCC 12394 chromosome [FIRMICUTES] (CP002215) circular 2,159,491 39.5 2,092 1,886 15 57 - 133 genome Streptococcus dysgalactiae equisimilis GGS_124 chromosome [FIRMICUTES] (AP010935) circular 2,106,340 39.6 2,108 1,965 15 57 - 70 genome Streptococcus dysgalactiae equisimilis RE378 chromosome [FIRMICUTES] (AP011114) circular 2,151,145 39.5 2,081 1,909 15 56 - 100 genome Streptococcus equi equi 4047 chromosome [FIRMICUTES] (FM204883) circular 2,253,793 41.3 2,196 2,000 18 66 - 112 genome Streptococcus equi zooepidemicus ATCC 35246 chromosome [FIRMICUTES] (CP002904) circular 2,167,264 41.6 2,039 1,898 15 57 - 69 genome Streptococcus equi zooepidemicus H70 chromosome [FIRMICUTES] (FM204884) circular 2,149,868 41.5 2,003 1,887 15 57 - 44 genome Streptococcus equi zooepidemicus MGCS10565 chromosome [FIRMICUTES] (CP001129) circular 2,024,171 41.8 1,896 1,749 15 57 - 75 genome Streptococcus gallolyticus gallolyticus ATCC 43143 chromosome [FIRMICUTES] (AP012053) circular 2,362,241 37.5 2,333 2,224 15 60 - 33 genome Streptococcus gallolyticus gallolyticus ATCC BAA-2069 chromosome [FIRMICUTES] (FR824043) circular 2,356,444 37.6 2,341 2,204 21 80 - 35 genome Streptococcus gallolyticus gallolyticus ATCC BAA-2069 plasmid pSGG1 [FIRMICUTES] (FR824044) circular 20,765 37.3 19 18 - - - 1 genome Streptococcus gallolyticus UCN34 chromosome [FIRMICUTES] (FN597254) circular 2,350,911 37.5 2,333 2,224 15 60 - 33 genome Streptococcus gordonii str. Challis substr. CH1 chromosome [FIRMICUTES] (CP000725) circular 2,196,662 40.5 2,109 2,003 12 59 2 32 genome Streptococcus infantarius infantarius CJ18 chromosome [FIRMICUTES] (CP003295) circular 1,988,420 37.6 1,934 1,762 10 48 1 112 genome Streptococcus infantarius infantarius CJ18 plasmid pSICJ18-1 [FIRMICUTES] (CP003296) circular 19,829 35.0 23 16 - - - 7 genome Streptococcus intermedius JTH08 chromosome [FIRMICUTES] (AP010969) circular 1,933,610 37.7 1,896 1,786 12 67 - 30 genome Streptococcus macedonicus ACA-DC 198 chromosome [FIRMICUTES] (HE613569) circular 2,130,034 37.6 2,100 1,794 18 70 - 218 genome Streptococcus macedonicus ACA-DC 198 plasmid pSMA198 [FIRMICUTES] (HE613570) circular 12,728 35.0 16 14 - - - 2 genome Streptococcus mitis B6 chromosome [FIRMICUTES] (FN568063) circular 2,146,611 40.0 2,096 2,002 12 61 18 12 genome Streptococcus mutans GS-5 chromosome [FIRMICUTES] (CP003686) circular 2,027,088 36.8 1,963 1,820 15 64 - 63 genome Streptococcus mutans LJ23 chromosome [FIRMICUTES] (AP012336) circular 2,015,626 37.1 1,966 1,853 15 64 2 31 genome Streptococcus mutans NN2025 chromosome [FIRMICUTES] (AP010655) linear 2,013,587 36.8 1,955 1,848 15 64 - 27 genome Streptococcus mutans UA159 chromosome [FIRMICUTES] (AE014133) circular 2,032,925 36.8 2,042 1,960 15 65 - 3 genome Streptococcus oralis Uo5 chromosome [FIRMICUTES] (FR720602) circular 1,958,690 41.1 1,946 1,823 12 61 9 41 genome Streptococcus parasanguinis ATCC 15912 chromosome [FIRMICUTES] (CP002843) circular 2,153,652 41.7 2,028 1,924 12 61 1 30 genome Streptococcus parasanguinis FW213 chromosome [FIRMICUTES] (CP003122) circular 2,171,609 41.6 2,061 1,949 12 61 - 39 genome Streptococcus parasanguinis plasmid pFW213 [FIRMICUTES] (EU685104) circular 7,078 35.3 5 5 - - - - plasmid Streptococcus parauberis KCTC 11537 chromosome [FIRMICUTES] (CP002471) circular 2,143,887 35.5 2,198 1,839 15 60 - 283 genome Streptococcus pasteurianus ATCC 43144 chromosome [FIRMICUTES] (AP012054) circular 2,100,077 37.4 2,051 1,869 15 60 - 106 genome Streptococcus pneumoniae 670-6B chromosome [FIRMICUTES] (CP002176) circular 2,240,045 39.6 2,408 2,258 12 59 - 78 genome Streptococcus pneumoniae 70585 chromosome [FIRMICUTES] (CP000918) linear 2,184,682 39.7 2,335 2,178 12 59 6 79 genome Streptococcus pneumoniae AP200 chromosome [FIRMICUTES] (CP002121) circular 2,130,580 39.5 2,258 2,096 12 54 - 95 genome Streptococcus pneumoniae ATCC 700669 chromosome [FIRMICUTES] (FM211187) circular 2,221,315 39.5 2,332 2,200 12 59 - 60 genome Streptococcus pneumoniae CGSP14 chromosome [FIRMICUTES] (CP001033) circular 2,209,198 39.5 2,324 2,176 12 58 - 77 genome Streptococcus pneumoniae D39 chromosome [FIRMICUTES] (CP000410) circular 2,046,115 39.7 2,165 2,051 12 59 - 42 genome Streptococcus pneumoniae G54 chromosome [FIRMICUTES] (CP001015) circular 2,078,953 39.7 2,182 2,007 12 58 1 103 genome Streptococcus pneumoniae gamPNI0373 chromosome [FIRMICUTES] (CP001845) circular 2,064,154 39.8 2,207 2,060 12 58 1 75 genome Streptococcus pneumoniae Hungary19A-6 chromosome [FIRMICUTES] (CP000936) circular 2,245,615 39.6 2,376 2,227 12 58 2 77 genome Streptococcus pneumoniae INV104 chromosome [FIRMICUTES] (FQ312030) circular 2,142,122 39.6 2,266 2,108 12 59 - 86 genome Streptococcus pneumoniae INV200 chromosome [FIRMICUTES] (FQ312029) circular 2,093,317 39.6 2,207 2,070 12 58 - 66 genome Streptococcus pneumoniae JJA chromosome [FIRMICUTES] (CP000919) circular 2,120,234 39.7 2,247 2,099 12 59 - 76 genome Streptococcus pneumoniae OXC141 chromosome [FIRMICUTES] (FQ312027) circular 2,036,867 39.8 2,189 2,043 12 59 - 74 genome Streptococcus pneumoniae P1031 chromosome [FIRMICUTES] (CP000920) circular 2,111,882 39.7 2,263 2,112 12 59 6 73 genome Streptococcus pneumoniae R6 chromosome [FIRMICUTES] (AE007317) circular 2,038,615 39.7 1,967 1,814 12 58 3 79 genome Streptococcus pneumoniae SPNA45 chromosome [FIRMICUTES] (HE983624) circular 2,129,934 39.8 2,316 2,097 12 59 - 147 genome Streptococcus pneumoniae ST556 chromosome [FIRMICUTES] (CP003357) circular 2,150,813 39.7 2,280 2,147 12 58 - 62 genome Streptococcus pneumoniae Taiwan19F-14 chromosome [FIRMICUTES] (CP000921) circular 2,112,148 39.8 2,233 2,086 12 58 6 70 genome Streptococcus pneumoniae TCH8431/19A chromosome [FIRMICUTES] (CP001993) circular 2,088,772 39.8 2,207 2,063 12 58 4 69 genome Streptococcus pneumoniae TIGR4 chromosome [FIRMICUTES] (AE005672) circular 2,160,842 39.7 2,287 2,138 12 58 - 78 genome Streptococcus pseudopneumoniae IS7493 chromosome [FIRMICUTES] (CP002925) circular 2,190,731 39.8 2,254 2,106 3 41 - 103 genome Streptococcus pseudopneumoniae IS7493 plasmid pDRPIS7493 [FIRMICUTES] (CP002926) circular 4,727 38.3 6 6 - - - - genome Streptococcus pyogenes A20 chromosome [FIRMICUTES] (CP003901) circular 1,837,281 38.5 1,833 1,724 18 67 - 23 genome Streptococcus pyogenes Alab49 chromosome [FIRMICUTES] (CP003068) circular 1,827,308 38.6 1,816 1,699 18 67 - 31 genome Streptococcus pyogenes M1 GAS chromosome [FIRMICUTES] (AE004092) circular 1,852,433 38.5 1,801 1,693 12 60 1 35 genome Streptococcus pyogenes Manfredo chromosome [FIRMICUTES] (AM295007) circular 1,841,271 38.6 1,841 1,720 18 66 - 36 genome Streptococcus pyogenes MGAS10270 chromosome [FIRMICUTES] (CP000260) circular 1,928,252 38.4 1,922 1,780 18 67 - 56 genome Streptococcus pyogenes MGAS10394 chromosome [FIRMICUTES] (CP000003) circular 1,899,877 38.7 1,875 1,738 18 67 - 51 genome Streptococcus pyogenes MGAS10750 chromosome [FIRMICUTES] (CP000262) circular 1,937,111 38.3 1,924 1,772 18 67 - 66 genome Streptococcus pyogenes MGAS15252 chromosome [FIRMICUTES] (CP003116) circular 1,750,832 38.5 1,693 1,587 15 57 - 33 genome Streptococcus pyogenes MGAS1882 chromosome [FIRMICUTES] (CP003121) circular 1,781,029 38.5 1,728 1,624 15 57 - 31 genome Streptococcus pyogenes MGAS2096 chromosome [FIRMICUTES] (CP000261) circular 1,860,355 38.7 1,811 1,614 18 67 - 111 genome Streptococcus pyogenes MGAS315 chromosome [FIRMICUTES] (AE014074) circular 1,900,521 38.6 1,924 1,809 18 67 - 29 genome Streptococcus pyogenes MGAS5005 chromosome [FIRMICUTES] (CP000017) circular 1,838,562 38.5 1,835 1,727 18 67 - 22 genome Streptococcus pyogenes MGAS6180 chromosome [FIRMICUTES] (CP000056) circular 1,897,573 38.4 1,873 1,753 18 67 - 34 genome Streptococcus pyogenes MGAS8232 chromosome [FIRMICUTES] (AE009949) circular 1,895,017 38.5 1,920 1,794 18 67 - 40 genome Streptococcus pyogenes MGAS9429 chromosome [FIRMICUTES] (CP000259) circular 1,836,467 38.5 1,801 1,683 18 67 - 32 genome Streptococcus pyogenes NZ131 chromosome [FIRMICUTES] (CP000829) circular 1,815,785 38.6 1,791 1,629 18 66 - 77 genome Streptococcus pyogenes plasmid pSM19035 [FIRMICUTES] (AY357120) circular 28,975 34.8 35 35 - - - - plasmid Streptococcus pyogenes SSI-1 chromosome [FIRMICUTES] (BA000034) circular 1,894,275 38.6 1,912 1,808 15 57 - 31 genome Streptococcus salivarius CCHSS3 (JIM8780) chromosome [FIRMICUTES] (FR873481) circular 2,217,184 39.9 2,063 1,932 18 68 - 44 genome Streptococcus salivarius JIM8777 chromosome [FIRMICUTES] (FR873482) circular 2,210,574 40.1 2,031 1,922 18 68 - 23 genome Streptococcus sanguinis SK36 chromosome [FIRMICUTES] (CP000387) circular 2,388,435 43.4 2,348 2,270 12 61 1 4 genome Streptococcus suis 05ZYH33 chromosome [FIRMICUTES] (CP000407) circular 2,096,309 41.1 2,254 2,186 12 56 - - genome Streptococcus suis 98HAH33 chromosome [FIRMICUTES] (CP000408) circular 2,095,698 41.1 2,257 2,189 12 56 - - genome

51 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Streptococcus suis A7 chromosome [FIRMICUTES] (CP002570) circular 2,038,409 41.2 1,998 1,882 12 56 - 47 genome Streptococcus suis BM407 chromosome [FIRMICUTES] (FM252032) circular 2,146,229 41.1 2,118 1,932 12 52 13 104 genome Streptococcus suis BM407 plasmid pBM407 [FIRMICUTES] (FM252033) circular 24,579 36.4 18 15 - - - 3 genome Streptococcus suis D12 chromosome [FIRMICUTES] (CP002644) circular 2,183,059 41.3 2,147 1,991 12 56 - 87 genome Streptococcus suis D9 chromosome [FIRMICUTES] (CP002641) circular 2,177,656 41.0 2,130 1,951 12 54 - 112 genome Streptococcus suis GZ1 chromosome [FIRMICUTES] (CP000837) circular 2,038,034 41.4 2,005 1,858 12 49 - 85 genome Streptococcus suis JS14 chromosome [FIRMICUTES] (CP002465) circular 2,137,435 41.2 2,107 1,968 12 62 - 64 genome Streptococcus suis P1/7 chromosome [FIRMICUTES] (AM946016) circular 2,007,491 41.3 1,982 1,894 12 56 - 19 genome Streptococcus suis S735 chromosome [FIRMICUTES] (CP003736) circular 1,980,887 41.4 1,944 1,833 12 56 - 42 genome Streptococcus suis SC84 chromosome [FIRMICUTES] (FM252031) circular 2,095,898 41.1 2,056 1,967 12 56 - 20 genome Streptococcus suis SS12 chromosome [FIRMICUTES] (CP002640) circular 2,096,866 41.2 2,087 1,983 12 59 - 32 genome Streptococcus suis ST1 chromosome [FIRMICUTES] (CP002651) circular 2,034,321 41.4 2,028 1,849 12 58 - 108 genome Streptococcus suis ST3 chromosome [FIRMICUTES] (CP002633) circular 2,028,815 41.3 1,992 1,847 12 55 - 77 genome Streptococcus thermophilus CNRZ1066 chromosome [FIRMICUTES] (CP000024) circular 1,796,226 39.1 1,900 1,694 18 67 - 121 genome Streptococcus thermophilus JIM 8232 chromosome [FIRMICUTES] (FR875178) circular 1,929,905 38.9 2,005 1,797 18 67 - 123 genome Streptococcus thermophilus LMD-9 chromosome [FIRMICUTES] (CP000419) circular 1,856,368 39.1 1,953 1,736 18 67 - 132 genome Streptococcus thermophilus LMD-9 plasmid 1 [FIRMICUTES] (CP000420) circular 4,449 37.0 5 5 - - - - genome Streptococcus thermophilus LMG 18311 chromosome [FIRMICUTES] (CP000023) circular 1,796,846 39.1 1,887 1,679 18 67 - 123 genome Streptococcus thermophilus MN-ZLW-002 chromosome [FIRMICUTES] (CP003499) circular 1,848,520 39.1 1,937 1,745 15 57 - 119 genome Streptococcus thermophilus ND03 chromosome [FIRMICUTES] (CP002340) circular 1,831,949 39.0 1,933 1,746 15 57 - 115 genome Streptococcus thermophilus plasmid pER371 [FIRMICUTES] (AF022180) circular 2,672 38.2 3 3 - - - - plasmid Streptococcus thermophilus plasmid pSMQ-316 [FIRMICUTES] (DQ295022) circular 6,710 37.7 5 5 - - - - plasmid Streptococcus thermophilus plasmid pSMQ173b [FIRMICUTES] (AY312235) circular 4,449 37.0 5 5 - - - - plasmid Streptococcus thermophilus plasmid pSMQ308 [FIRMICUTES] (AY312234) circular 8,144 37.8 6 6 - - - - plasmid Streptococcus uberis 0140J chromosome [FIRMICUTES] (AM946015) circular 1,852,352 36.6 1,858 1,762 15 59 - 22 genome Streptomyces albulus plasmid pNO33 [ACTINOBACTERIA] (AB058947) circular 36,955 68.9 16 16 - - - - plasmid Streptomyces avermitilis MA-4680 chromosome [ACTINOBACTERIA] (BA000030) linear 9,025,608 70.7 7,678 7,342 18 72 4 242 genome Streptomyces avermitilis MA-4680 plasmid pSAP1 [ACTINOBACTERIA] (AP005645) linear 94,287 69.2 89 84 - - - 5 genome Streptomyces bingchenggensis BCW-1 chromosome [ACTINOBACTERIA] (CP002047) linear 11,936,683 70.8 9,793 9,339 18 66 1 369 genome Streptomyces cattleya NRRL 8057 = DSM 46488 chromosome [ACTINOBACTERIA] (CP003219) linear 6,282,967 72.9 5,490 5,360 18 64 1 47 genome Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT [ACTINOBACTERIA] (CP003229) linear 1,812,548 73.3 1,608 1,589 - - - 19 genome Streptomyces cattleya NRRL 8057 = DSM 46488 chromosome [ACTINOBACTERIA] (FQ859185) linear 6,283,062 72.9 5,505 5,362 18 63 20 42 genome Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCA [ACTINOBACTERIA] (FQ859184) linear 1,809,491 73.3 1,611 1,592 - - 3 16 genome Streptomyces clavuligerus ATCC 27064 plasmid pSCL4 [ACTINOBACTERIA] (CM000914) linear 1,796,500 71.8 1,432 1,405 - - - 27 plasmid Streptomyces clavuligerus ATCC 27064 plasmid pSCL [ACTINOBACTERIA] (X54107) linear 11,696 71.9 6 6 - - - - plasmid Streptomyces clavuligerus ATCC 27064 plasmid pSCL1 [ACTINOBACTERIA] (CM001016) linear 10,466 71.3 10 10 - - - - plasmid Streptomyces clavuligerus ATCC 27064 plasmid pSCL2 [ACTINOBACTERIA] (CM001017) linear 149,426 70.0 148 143 - - - 5 plasmid Streptomyces clavuligerus ATCC 27064 plasmid pSCL3 [ACTINOBACTERIA] (CM001018) linear 444,192 70.7 401 371 - 1 - 29 plasmid Streptomyces clavuligerus ATCC 27064 plasmid pSCL4 [ACTINOBACTERIA] (CM001019) linear 1,797,117 71.8 1,425 1,405 - - - 20 plasmid Streptomyces coelicolor A3(2) chromosome [ACTINOBACTERIA] (AL645882) linear 8,667,507 72.1 7,910 7,767 18 65 3 56 genome Streptomyces coelicolor A3(2) plasmid pSCP1 [ACTINOBACTERIA] (AL589148) linear 356,023 69.1 355 351 - - - 4 genome Streptomyces coelicolor A3(2) plasmid pSCP2 [ACTINOBACTERIA] (AL645771) circular 31,317 72.1 34 34 - - - - genome Streptomyces cyaneus plasmid pSA1.1 [ACTINOBACTERIA] (AB010724) linear 9,014 68.7 ------plasmid Streptomyces flavovirens plasmid pSN22 [ACTINOBACTERIA] (D14281) circular 11,046 71.9 9 9 - - - - plasmid Streptomyces ghanaensis plasmid pSG5 [ACTINOBACTERIA] (X80774) circular 12,207 70.0 11 11 - - - - plasmid Streptomyces griseus griseus NBRC 13350 chromosome [ACTINOBACTERIA] (AP009493) linear 8,545,929 72.2 7,092 6,942 18 66 3 63 genome Streptomyces hygroscopicus jinggangensis 5008 chromosome [ACTINOBACTERIA] (CP003275) linear 10,145,833 71.9 8,872 8,675 18 70 2 107 genome Streptomyces hygroscopicus jinggangensis 5008 plasmid pSHJG1 [ACTINOBACTERIA] (CP003276) linear 164,566 69.0 154 151 - - - 3 genome Streptomyces hygroscopicus jinggangensis 5008 plasmid pSHJG2 [ACTINOBACTERIA] (CP003277) circular 73,285 70.9 73 72 - - - 1 genome Streptomyces laurentii plasmid pSLS [ACTINOBACTERIA] (AB093554) linear 15,397 70.9 10 10 - - - - plasmid Streptomyces lavendulae plasmid pSLG33 [ACTINOBACTERIA] (X69872) linear 2,661 65.2 ------plasmid Streptomyces lividans 1326 plasmid SLP2 [ACTINOBACTERIA] (AY225511) linear 50,410 68.4 43 42 - - - - plasmid Streptomyces natalensis plasmid pSNA1 [ACTINOBACTERIA] (AJ243257) circular 9,367 71.3 4 4 - - - - plasmid Streptomyces phaeochromogenes plasmid pJV1 [ACTINOBACTERIA] (U23762) circular 11,143 71.7 9 9 - - - - plasmid Streptomyces pratensis ATCC 33331 chromosome [ACTINOBACTERIA] (CP002475) linear 7,337,497 71.1 6,396 6,226 18 68 2 82 genome Streptomyces pratensis ATCC 33331 plasmid pSFLA01 [ACTINOBACTERIA] (CP002476) linear 188,552 67.8 181 166 - - - 15 genome Streptomyces pratensis ATCC 33331 plasmid pSFLA02 [ACTINOBACTERIA] (CP002477) linear 130,055 67.2 116 105 - - - 11 genome Streptomyces rochei plasmid pSLA2-L [ACTINOBACTERIA] (AB088224) linear 210,614 72.8 143 142 - - - 1 plasmid Streptomyces scabiei 87.22 chromosome [ACTINOBACTERIA] (FN554889) linear 10,148,695 71.5 8,690 8,450 18 75 1 146 genome Streptomyces sp. 44030 plasmid pRL1 [ACTINOBACTERIA] (DQ322649) linear 32,759 66.9 33 33 - - - - plasmid Streptomyces sp. 44414 plasmid pRL2 [ACTINOBACTERIA] (DQ322650) linear 20,252 70.4 26 26 - - - - plasmid Streptomyces sp. EN27 plasmid pEN2701 [ACTINOBACTERIA] (AF533985) circular 12,855 72.6 13 13 - - - - plasmid Streptomyces sp. F11 plasmid pFP11 [ACTINOBACTERIA] (AY943952) circular 35,159 69.4 37 37 - - - - plasmid Streptomyces sp. FQ1 plasmid pFP1 [ACTINOBACTERIA] (AY943953) circular 39,360 72.1 44 44 - - - - plasmid Streptomyces sp. FR1 plasmid pFRL1 [ACTINOBACTERIA] (DQ322651) linear 54,288 72.1 59 59 - - - - plasmid Streptomyces sp. HK1 plasmid pSHK1 [ACTINOBACTERIA] (EU372836) linear 187,263 70.1 158 158 - - - - plasmid Streptomyces sp. SirexAA-E chromosome [ACTINOBACTERIA] (CP002993) circular 7,414,440 71.7 6,492 6,333 19 64 2 74 genome Streptomyces sp. Tu6071 plasmid pTu6071 [ACTINOBACTERIA] (CM001166) linear 147,347 70.9 132 124 - - - 8 plasmid Streptomyces sp. W9 plasmid pCQ3 [ACTINOBACTERIA] (GQ983381) circular 85,518 69.3 110 110 - - - - plasmid Streptomyces sp. x3 plasmid pTSC2 [ACTINOBACTERIA] (GQ984145) circular 7,516 72.3 6 6 - - - - plasmid Streptomyces sp. Y27 plasmid pWTY27 [ACTINOBACTERIA] (GU226194) circular 14,288 71.8 15 15 - - - - plasmid Streptomyces sp. ZL12 plasmid pZL12 [ACTINOBACTERIA] (GQ919031) circular 90,435 69.5 112 112 - - - - plasmid Streptomyces venezuelae ATCC 10712 chromosome [ACTINOBACTERIA] (FR845719) linear 8,226,158 72.4 7,361 7,080 12 66 1 202 genome Streptomyces venezuelae plasmid pSVH1 [ACTINOBACTERIA] (AM087403) circular 12,652 71.3 11 11 - - - - plasmid Streptomyces violaceoruber plasmid pSV2 [ACTINOBACTERIA] (AY211023) linear 96,742 69.8 111 111 - - - - plasmid Streptomyces violaceusniger Tu 4113 chromosome [ACTINOBACTERIA] (CP002994) circular 10,657,107 71.0 8,714 8,252 18 64 2 378 genome Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01 [ACTINOBACTERIA] (CP002995) circular 290,055 68.2 266 250 - - - 16 genome Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02 [ACTINOBACTERIA] (CP002996) circular 191,151 69.7 223 219 - 1 - 3 genome Streptosporangium roseum DSM 43021 chromosome [ACTINOBACTERIA] (CP001814) circular 10,341,314 70.9 9,043 8,767 18 63 2 193 genome Streptosporangium roseum DSM 43021 plasmid pSROS01 [ACTINOBACTERIA] (CP001815) circular 28,204 69.6 33 30 - - - 3 genome Sulfobacillus acidophilus DSM 10332 chromosome [FIRMICUTES] (CP003179) circular 3,472,898 56.8 3,594 3,384 13 53 3 141 genome Sulfobacillus acidophilus TPY chromosome [FIRMICUTES] (CP002901) circular 3,551,206 56.8 3,837 3,754 15 52 - 16 genome Sulfobacillus thermotolerans plasmid pY0017 [FIRMICUTES] (JN119830) circular 59,212 58.2 61 61 - - - - plasmid Sulfuricurvum kujiense DSM 16994 chromosome [PROTEOBACTERIA] (CP002355) circular 2,574,824 45.0 2,572 2,492 9 49 2 20 genome Sulfuricurvum kujiense DSM 16994 plasmid pSULKU01 [PROTEOBACTERIA] (CP002356) circular 118,585 40.6 114 110 - - - 4 genome Sulfuricurvum kujiense DSM 16994 plasmid pSULKU02 [PROTEOBACTERIA] (CP002357) circular 71,513 40.3 85 84 - - - 1 genome Sulfuricurvum kujiense DSM 16994 plasmid pSULKU03 [PROTEOBACTERIA] (CP002358) circular 51,014 38.2 55 54 - - - 1 genome

52 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Sulfurihydrogenibium azorense Az-Fu1 chromosome [AQUIFICAE] (CP001229) circular 1,640,877 32.8 1,735 1,667 6 39 1 22 genome Sulfurihydrogenibium sp. YO3AOP1 chromosome [AQUIFICAE] (CP001080) circular 1,838,442 32.0 1,823 1,710 9 40 2 62 genome Sulfurimonas autotrophica DSM 16294 chromosome [PROTEOBACTERIA] (CP002205) circular 2,153,198 35.2 2,191 2,128 12 43 1 7 genome Sulfurimonas denitrificans DSM 1251 chromosome [PROTEOBACTERIA] (CP000153) circular 2,201,561 34.5 2,189 2,120 12 44 1 12 genome Sulfurospirillum barnesii SES-3 chromosome [PROTEOBACTERIA] (CP003333) circular 2,510,109 38.8 2,541 2,478 6 41 2 14 genome Sulfurospirillum deleyianum DSM 6946 chromosome [PROTEOBACTERIA] (CP001816) circular 2,306,351 39.0 2,318 2,258 9 43 2 6 genome Sulfurovum sp. NBC37-1 chromosome [PROTEOBACTERIA] (AP009179) circular 2,562,277 43.9 2,570 2,490 9 43 1 27 genome Symbiobacterium thermophilum IAM 14863 chromosome [FIRMICUTES] (AP006840) circular 3,566,135 68.7 3,319 3,160 18 97 - 44 genome Synechococcus elongatus PCC 6301 chromosome [CYANOBACTERIA] (AP008231) circular 2,696,255 55.5 2,582 2,527 2 55 - - genome Synechococcus elongatus PCC 7942 chromosome [CYANOBACTERIA] (CP000100) circular 2,695,903 55.5 2,659 2,601 6 44 3 5 genome Synechococcus elongatus PCC 7942 plasmid pANL [CYANOBACTERIA] (AF441790) circular 46,366 52.9 58 58 - - - - plasmid Synechococcus elongatus PCC 7942 plasmid1e [CYANOBACTERIA] (CP000101) circular 46,366 52.9 54 54 - - - - genome Synechococcus sp. CC9311 chromosome [CYANOBACTERIA] (CP000435) circular 2,606,748 52.4 2,690 2,627 6 43 3 11 genome Synechococcus sp. CC9605 chromosome [CYANOBACTERIA] (CP000110) circular 2,510,659 59.2 2,674 2,583 6 46 3 36 genome Synechococcus sp. CC9902 chromosome [CYANOBACTERIA] (CP000097) circular 2,234,828 54.2 2,349 2,289 6 44 1 8 genome Synechococcus sp. JA-2-3B'a(2-13) chromosome [CYANOBACTERIA] (CP000240) circular 3,046,682 58.5 2,794 2,705 6 44 2 37 genome Synechococcus sp. JA-3-3Ab chromosome [CYANOBACTERIA] (CP000239) circular 2,932,766 60.2 2,726 2,590 6 46 3 81 genome Synechococcus sp. PCC 7002 chromosome [CYANOBACTERIA] (CP000951) circular 3,008,047 49.6 2,835 2,758 6 42 2 27 genome Synechococcus sp. PCC 7002 plasmid pAQ3 [CYANOBACTERIA] (CP000953) circular 16,103 45.9 17 17 - - - - genome Synechococcus sp. PCC 7002 plasmid pAQ4 [CYANOBACTERIA] (CP000954) circular 31,972 44.1 33 32 - - - 1 genome Synechococcus sp. PCC 7002 plasmid pAQ5 [CYANOBACTERIA] (CP000955) circular 38,515 42.6 40 39 - - - 1 genome Synechococcus sp. PCC 7002 plasmid pAQ6 [CYANOBACTERIA] (CP000956) circular 124,030 45.1 108 107 - - - 1 genome Synechococcus sp. PCC 7002 plasmid pAQ7 [CYANOBACTERIA] (CP000957) circular 186,459 47.3 166 164 - - - 2 genome Synechococcus sp. RCC307 chromosome [CYANOBACTERIA] (CT978603) circular 2,224,914 60.8 2,415 2,348 3 41 4 18 genome Synechococcus sp. WH 7803 chromosome [CYANOBACTERIA] (CT971583) circular 2,366,980 60.2 2,505 2,439 6 43 4 13 genome Synechococcus sp. WH 8102 chromosome [CYANOBACTERIA] (BX548020) circular 2,434,428 59.4 2,552 2,461 6 43 4 38 genome Synechocystis sp. PCC 6803 chromosome [CYANOBACTERIA] (BA000022) circular 3,573,470 47.7 3,299 3,230 6 41 1 21 genome Synechocystis sp. PCC 6803 plasmid pSYSA [CYANOBACTERIA] (AP004311) circular 103,307 44.5 100 99 - - - 1 genome Synechocystis sp. PCC 6803 plasmid pSYSG [CYANOBACTERIA] (AP004312) circular 44,343 48.6 48 48 - - - - genome Synechocystis sp. PCC 6803 plasmid pSYSM [CYANOBACTERIA] (AP004310) circular 119,895 43.0 124 123 - - - 1 genome Synechocystis sp. PCC 6803 plasmid pSYSX [CYANOBACTERIA] (AP006585) circular 106,004 42.7 102 102 - - - - genome Synechocystis sp. PCC 6803 substr. GT-I chromosome [CYANOBACTERIA] (AP012276) circular 3,570,004 47.7 3,289 3,221 6 41 1 20 genome Synechocystis sp. PCC 6803 substr. GT-S chromosome [CYANOBACTERIA] (AP012205) circular 3,571,103 47.7 3,289 3,224 6 41 1 17 genome Synechocystis sp. PCC 6803 substr. PCC-N chromosome [CYANOBACTERIA] (AP012277) circular 3,570,103 47.7 3,298 3,231 6 41 1 19 genome Synechocystis sp. PCC 6803 substr. PCC-P chromosome [CYANOBACTERIA] (AP012278) circular 3,570,114 47.7 3,300 3,233 6 41 1 19 genome Syntrophobacter fumaroxidans MPOB chromosome [PROTEOBACTERIA] (CP000478) circular 4,990,251 59.9 4,207 4,084 6 50 3 64 genome Syntrophobotulus glycolicus DSM 8271 chromosome [FIRMICUTES] (CP002547) circular 3,406,739 46.4 3,363 3,236 12 54 2 59 genome Syntrophomonas wolfei wolfei Goettingen chromosome [FIRMICUTES] (CP000448) circular 2,936,195 44.9 2,660 2,548 11 46 3 52 genome Syntrophothermus lipocalidus DSM 12680 chromosome [FIRMICUTES] (CP002048) circular 2,405,559 51.0 2,366 2,287 6 45 2 26 genome Syntrophus aciditrophicus SB chromosome [PROTEOBACTERIA] (CP000252) circular 3,179,300 51.5 2,967 2,862 3 49 1 52 genome Tannerella forsythia ATCC 43037 chromosome [BACTEROIDETES] (CP003191) circular 3,405,521 47.0 2,786 2,662 6 46 1 71 genome Taylorella asinigenitalis MCE3 chromosome [PROTEOBACTERIA] (CP003059) circular 1,638,559 38.3 1,544 1,480 9 38 1 16 genome Taylorella equigenitalis ATCC 35865 chromosome [PROTEOBACTERIA] (CP003264) circular 1,732,123 37.3 1,602 1,530 9 38 1 24 genome Taylorella equigenitalis MCE9 chromosome [PROTEOBACTERIA] (CP002456) circular 1,695,860 37.4 1,563 1,503 9 38 1 12 genome Tepidanaerobacter acetatoxydans Re1 chromosome [FIRMICUTES] (CP002728) circular 2,759,867 37.5 2,643 2,539 6 52 1 45 genome Teredinibacter turnerae T7901 chromosome [PROTEOBACTERIA] (CP001614) circular 5,193,164 50.9 4,198 4,113 9 40 5 31 genome Terriglobus roseus DSM 18391 chromosome [ACIDOBACTERIA] (CP003379) circular 5,227,858 60.3 4,319 4,176 6 53 2 82 genome Terriglobus saanensis SP1PR4 chromosome [ACIDOBACTERIA] (CP002467) circular 5,095,226 57.3 4,261 4,163 3 46 2 47 genome Tetragenococcus halophilus NBRC12171 chromosome [FIRMICUTES] (AP012046) circular 2,562,720 36.0 2,540 2,387 15 62 1 75 genome Tetragenococcus halophilus plasmid pHDC [FIRMICUTES] (AB362339) circular 29,924 35.9 27 27 - - - - plasmid Tetragenococcus halophilus plasmid pHDC-A [FIRMICUTES] (AB588176) circular 32,501 36.0 26 26 - - - - plasmid Tetragenococcus halophilus plasmid pHDC-HO [FIRMICUTES] (AB588177) circular 36,638 35.8 29 29 - - - - plasmid Tetragenococcus halophilus plasmid pHDC-I [FIRMICUTES] (AB588179) circular 23,071 36.3 20 20 - - - - plasmid Tetragenococcus halophilus plasmid pHDC-RI [FIRMICUTES] (AB588180) circular 21,231 36.1 18 18 - - - - plasmid Tetragenococcus halophilus plasmid pSKPB18 [FIRMICUTES] (AB250926) circular 3,350 35.9 2 2 - - - - plasmid Tetragenococcus muriaticus plasmid pHDC-Tm [FIRMICUTES] (AB588178) circular 21,516 37.3 16 16 - - - - plasmid Thauera sp. MZ1T chromosome [PROTEOBACTERIA] (CP001281) circular 4,496,212 68.4 3,962 3,831 12 58 3 58 genome Thauera sp. MZ1T plasmid pTha01 [PROTEOBACTERIA] (CP001282) circular 78,374 62.3 67 66 - - - 1 genome Thermacetogenium phaeum DSM 12270 chromosome [FIRMICUTES] (CP003732) circular 2,939,057 53.9 2,894 2,766 9 50 1 68 genome Thermaerobacter marianensis DSM 12885 chromosome [FIRMICUTES] (CP002344) circular 2,844,696 72.5 2,370 2,235 6 50 2 77 genome Thermanaerovibrio acidaminovorans DSM 6589 chromosome [SYNERGISTETES] (CP001818) circular 1,848,474 63.8 1,821 1,730 9 50 4 28 genome Thermincola potens JR chromosome [FIRMICUTES] (CP002028) circular 3,157,416 45.9 3,028 2,926 9 51 2 40 genome Thermoanaerobacter brockii finnii Ako-1 chromosome [FIRMICUTES] (CP002466) circular 2,344,824 34.5 2,326 2,201 12 56 2 55 genome Thermoanaerobacter italicus Ab9 chromosome [FIRMICUTES] (CP001936) circular 2,451,061 34.1 2,399 2,248 12 54 2 83 genome Thermoanaerobacter mathranii mathranii A3 chromosome [FIRMICUTES] (CP002032) circular 2,306,092 34.3 2,281 2,152 12 59 2 56 genome Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome [FIRMICUTES] (CP000924) circular 2,362,816 34.5 2,340 2,219 12 56 2 51 genome Thermoanaerobacter sp. X513 chromosome [FIRMICUTES] (CP002210) circular 2,456,520 34.5 2,430 2,317 12 56 2 43 genome Thermoanaerobacter sp. X514 chromosome [FIRMICUTES] (CP000923) circular 2,457,259 34.5 2,428 2,312 12 54 2 48 genome Thermoanaerobacter wiegelii Rt8.B1 chromosome [FIRMICUTES] (CP002991) circular 2,785,056 34.3 2,717 2,432 12 57 2 214 genome Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome [FIRMICUTES] (CP002171) circular 2,785,752 34.1 2,732 2,568 15 57 2 90 genome Thermoanaerobacterium thermosaccharolyticum JW/SL-YS485 chromosome [FIRMICUTES] (CP003184) circular 2,726,530 35.3 2,733 2,643 13 57 - 20 genome Thermoanaerobacterium thermosaccharolyticum JW/SL-YS485 phage THSA-485A [FIRMICUTES] (CP003186) circular 41,938 36.8 57 57 - - - - genome Thermoanaerobacterium thermosaccharolyticum JW/SL-YS485 plasmid pMU3262 [FIRMICUTES] (CP003185) circular 110,881 29.0 141 140 - - - 1 genome Thermoanaerobacterium xylanolyticum LX-11 chromosome [FIRMICUTES] (CP002739) circular 2,534,358 35.0 2,435 2,312 15 57 2 49 genome Thermobaculum terrenum ATCC BAA-798 chromosome1 [CHLOROFLEXI] (CP001825) circular 2,026,947 48.1 1,907 1,825 6 50 1 25 genome Thermobaculum terrenum ATCC BAA-798 chromosome2 [CHLOROFLEXI] (CP001826) circular 1,074,634 63.8 976 961 - - - 15 genome Thermobifida fusca YX chromosome [ACTINOBACTERIA] (CP000088) circular 3,642,249 67.5 3,098 3,017 12 52 3 14 genome Thermobispora bispora DSM 43833 chromosome [ACTINOBACTERIA] (CP001874) circular 4,189,976 72.4 3,566 3,403 10 53 2 98 genome Thermocrinis albus DSM 14484 chromosome [AQUIFICAE] (CP001931) circular 1,500,577 46.9 1,626 1,567 3 43 1 12 genome Thermodesulfatator indicus DSM 15286 chromosome [THERMODESULFOBACTERIA] (CP002683) circular 2,322,224 42.4 2,282 2,199 6 49 2 25 genome Thermodesulfobacterium sp. OPB45 chromosome [THERMODESULFOBACTERIA] (CP002829) circular 1,634,377 30.6 1,682 1,608 3 46 2 23 genome Thermodesulfobium narugense DSM 14796 chromosome [FIRMICUTES] (CP002690) circular 1,898,865 33.9 1,891 1,825 6 46 2 12 genome Thermodesulfovibrio yellowstonii DSM 11347 chromosome [NITROSPIRAE] (CP001147) circular 2,003,803 34.1 2,084 2,028 3 47 4 2 genome Thermomicrobium roseum DSM 5159 chromosome [CHLOROFLEXI] (CP001275) circular 2,003,006 63.6 1,846 1,763 3 45 - 35 genome Thermomicrobium roseum DSM 5159 plasmid unnamed [CHLOROFLEXI] (CP001276) circular 917,738 65.7 818 796 3 3 - 16 genome Thermomonospora curvata DSM 43183 chromosome [ACTINOBACTERIA] (CP001738) circular 5,639,016 71.6 4,883 4,730 12 59 2 80 genome Thermosediminibacter oceani DSM 16646 chromosome [FIRMICUTES] (CP002131) circular 2,280,035 46.8 2,313 2,197 9 51 2 54 genome

53 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Thermosipho africanus TCF52B chromosome [THERMOTOGAE] (CP001185) circular 2,016,657 30.8 2,013 1,907 9 48 1 48 genome Thermosipho melanesiensis BI429 chromosome [THERMOTOGAE] (CP000716) circular 1,915,238 31.4 1,973 1,878 12 50 3 30 genome Thermosynechococcus elongatus BP-1 chromosome [CYANOBACTERIA] (BA000039) circular 2,593,857 53.9 2,525 2,476 3 42 4 - genome Thermotoga lettingae TMO chromosome [THERMOTOGAE] (CP000812) circular 2,135,342 38.7 2,118 2,047 3 46 3 19 genome Thermotoga maritima MSB8 chromosome [THERMOTOGAE] (AE000512) circular 1,860,725 46.2 1,928 1,858 3 46 - - genome Thermotoga naphthophila RKU-10 chromosome [THERMOTOGAE] (CP001839) circular 1,809,823 46.1 1,856 1,768 3 46 2 37 genome Thermotoga neapolitana DSM 4359 chromosome [THERMOTOGAE] (CP000916) circular 1,884,562 46.9 1,928 1,829 3 48 1 47 genome Thermotoga petrophila RKU-1 chromosome [THERMOTOGAE] (CP000702) circular 1,823,511 46.1 1,850 1,772 3 46 1 28 genome Thermotoga sp. RQ2 chromosome [THERMOTOGAE] (CP000969) circular 1,877,693 46.2 1,909 1,832 3 46 2 26 genome Thermotoga thermarum DSM 5069 chromosome [THERMOTOGAE] (CP002351) circular 2,039,943 40.3 2,048 1,965 3 46 2 32 genome Thermovibrio ammonificans HB-1 chromosome [AQUIFICAE] (CP002444) circular 1,682,965 52.1 1,761 1,693 9 46 2 11 genome Thermovibrio ammonificans HB-1 plasmid pTHEAM01 [AQUIFICAE] (CP002445) circular 76,561 52.5 97 97 - - - - genome Thermovirga lienii DSM 17291 chromosome [SYNERGISTETES] (CP003096) circular 1,967,774 47.1 1,943 1,854 9 48 2 30 genome Thermus oshimai JL-2 chromosome [DEINOCOCCUS-THERMUS] (CP003249) circular 2,072,393 68.6 2,189 2,111 6 50 2 20 genome Thermus oshimai JL-2 plasmid pTHEOS01 [DEINOCOCCUS-THERMUS] (CP003250) circular 271,713 68.6 263 256 - - - 7 genome Thermus oshimai JL-2 plasmid pTHEOS02 [DEINOCOCCUS-THERMUS] (CP003251) circular 57,223 68.4 72 69 - 1 - 2 genome Thermus scotoductus SA-01 chromosome [DEINOCOCCUS-THERMUS] (CP001962) circular 2,346,803 64.9 2,470 2,385 5 48 1 31 genome Thermus thermophilus plasmid pTF62 [DEINOCOCCUS-THERMUS] (DQ058601) circular 10,402 67.6 15 15 - - - - plasmid Thermus thermophilus HB27 chromosome [DEINOCOCCUS-THERMUS] (AE017221) circular 1,894,877 69.4 2,026 1,932 6 49 1 38 genome Thermus thermophilus HB27 plasmid pTT27 [DEINOCOCCUS-THERMUS] (AE017222) circular 232,605 69.2 223 206 - - - 17 genome Thermus thermophilus HB8 chromosome [DEINOCOCCUS-THERMUS] (AP008226) circular 1,849,742 69.5 1,980 1,908 6 47 - 19 genome Thermus thermophilus HB8 plasmid pTT27 [DEINOCOCCUS-THERMUS] (AP008227) circular 256,992 69.4 251 251 - - - - genome Thermus thermophilus HB8 plasmid pTT8 [DEINOCOCCUS-THERMUS] (AB119193) circular 9,328 69.0 8 8 - - - - plasmid Thermus thermophilus HB8 plasmid pTT8 [DEINOCOCCUS-THERMUS] (AP008228) circular 9,322 69.0 14 14 - - - - genome Thermus thermophilus JL-18 chromosome [DEINOCOCCUS-THERMUS] (CP003252) circular 1,902,595 69.1 2,047 1,961 6 47 2 31 genome Thermus thermophilus JL-18 plasmid pTTJL1801 [DEINOCOCCUS-THERMUS] (CP003253) circular 265,886 68.5 279 259 - - - 20 genome Thermus thermophilus JL-18 plasmid pTTJL1802 [DEINOCOCCUS-THERMUS] (CP003254) circular 142,731 68.3 159 151 - 1 - 7 genome Thermus thermophilus SG0.5JP17-16 chromosome [DEINOCOCCUS-THERMUS] (CP002777) circular 1,863,201 68.9 2,006 1,912 6 48 2 38 genome Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601 [DEINOCOCCUS-THERMUS] (CP002778) circular 440,026 67.4 441 410 - - - 31 genome Thermus sp. 4C plasmid pL4C [DEINOCOCCUS-THERMUS] (EF407946) circular 21,248 68.6 34 34 - - - - plasmid Thermus sp. CCB_US3_UF1 chromosome [DEINOCOCCUS-THERMUS] (CP003126) circular 2,243,772 68.6 2,261 2,179 6 48 1 27 genome Thermus sp. CCB_US3_UF1 plasmid pTCCB09 [DEINOCOCCUS-THERMUS] (CP003127) circular 19,716 65.6 22 22 - - - - genome Thioalkalimicrobium cyclicum ALM1 chromosome [PROTEOBACTERIA] (CP002776) circular 1,932,455 47.0 1,709 1,649 6 41 2 11 genome Thioalkalivibrio sp. K90mix chromosome [PROTEOBACTERIA] (CP001905) circular 2,744,800 65.9 2,612 2,532 3 45 2 30 genome Thioalkalivibrio sp. K90mix plasmid pTK9001 [PROTEOBACTERIA] (CP001906) linear 240,256 61.7 272 271 - - - 1 genome Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome [PROTEOBACTERIA] (CP001339) circular 3,464,554 65.1 3,326 3,233 3 44 2 44 genome Thiobacillus denitrificans ATCC 25259 chromosome [PROTEOBACTERIA] (CP000116) circular 2,909,809 66.1 2,826 2,756 6 43 3 18 genome Thiocystis violascens DSM 198 chromosome [PROTEOBACTERIA] (CP003154) circular 5,017,071 62.6 4,465 4,261 9 50 5 140 genome Thiomicrospira crunogena XCL-2 chromosome [PROTEOBACTERIA] (CP000109) circular 2,427,734 43.1 2,300 2,237 9 43 1 10 genome Thiomonas arsenitoxydans 3As chromosome [PROTEOBACTERIA] (FP475956) circular 3,738,778 63.8 3,535 3,423 3 43 9 57 genome Thiomonas arsenitoxydans 3As plasmid pTHI [PROTEOBACTERIA] (FP475957) circular 46,756 60.5 57 56 - - - 1 genome Thiomonas intermedia K12 chromosome [PROTEOBACTERIA] (CP002021) circular 3,396,378 63.9 3,202 3,084 3 43 2 70 genome Thiomonas intermedia K12 plasmid pTINT01 [PROTEOBACTERIA] (CP002022) circular 45,943 61.5 45 41 - - - 4 genome Thiomonas intermedia K12 plasmid pTINT02 [PROTEOBACTERIA] (CP002023) circular 19,774 60.1 22 19 - - - 3 genome Tistrella mobilis KA081020-065 chromosome [PROTEOBACTERIA] (CP003236) circular 3,919,492 68.1 3,593 3,458 6 41 - 88 genome Tistrella mobilis KA081020-065 plasmid pTM1 [PROTEOBACTERIA] (CP003237) circular 692,456 68.3 571 548 - - - 23 genome Tistrella mobilis KA081020-065 plasmid pTM2 [PROTEOBACTERIA] (CP003238) circular 690,188 67.6 592 580 - 1 - 11 genome Tistrella mobilis KA081020-065 plasmid pTM3 [PROTEOBACTERIA] (CP003239) circular 1,126,962 68.1 943 906 3 9 1 24 genome Tistrella mobilis KA081020-065 plasmid pTM4 [PROTEOBACTERIA] (CP003240) circular 83,885 67.3 76 70 3 3 - - genome Tolumonas auensis DSM 9187 chromosome [PROTEOBACTERIA] (CP001616) circular 3,471,292 49.0 3,249 3,106 25 90 2 26 genome Tomato big bud phytoplasma plasmid pTBBperi [TENERICUTES] (DQ119297) circular 3,319 26.8 4 4 - - - - plasmid Treponema azotonutricium ZAS-9 chromosome [SPIROCHAETAE] (CP001841) circular 3,855,671 49.8 3,434 3,338 6 46 2 42 genome Treponema brennaborense DSM 12168 chromosome [SPIROCHAETAE] (CP002696) circular 3,055,580 51.5 2,668 2,577 12 45 2 32 genome Treponema denticola ATCC 35405 chromosome [SPIROCHAETAE] (AE017226) circular 2,843,201 37.9 2,838 2,767 6 44 2 19 genome Treponema pallidum pallidum Chicago chromosome [SPIROCHAETAE] (CP001752) circular 1,139,281 52.8 1,030 969 6 45 2 8 genome Treponema pallidum pallidum DAL-1 chromosome [SPIROCHAETAE] (CP003115) circular 1,139,971 52.8 1,030 969 6 45 2 8 genome Treponema pallidum pallidum Mexico A chromosome [SPIROCHAETAE] (CP003064) circular 1,140,038 52.8 1,029 968 6 45 2 8 genome Treponema pallidum pallidum Nichols chromosome [SPIROCHAETAE] (AE000520) circular 1,138,011 52.8 1,044 970 6 45 1 22 genome Treponema pallidum pallidum SS14 chromosome [SPIROCHAETAE] (CP000805) circular 1,139,457 52.8 1,042 971 6 45 1 19 genome Treponema pallidum pertenue CDC2 chromosome [SPIROCHAETAE] (CP002375) circular 1,139,744 52.8 1,030 973 6 45 2 4 genome Treponema pallidum pertenue Gauthier chromosome [SPIROCHAETAE] (CP002376) circular 1,139,417 52.8 1,029 971 6 45 2 5 genome Treponema pallidum pertenue SamoaD chromosome [SPIROCHAETAE] (CP002374) circular 1,139,330 52.8 1,027 971 6 45 2 3 genome Treponema paraluiscuniculi Cuniculi A chromosome [SPIROCHAETAE] (CP002103) circular 1,133,390 52.7 1,022 945 6 45 3 23 genome Treponema primitia ZAS-2 chromosome [SPIROCHAETAE] (CP001843) circular 4,059,867 50.8 3,536 3,427 6 51 2 49 genome Treponema succinifaciens DSM 2489 chromosome [SPIROCHAETAE] (CP002631) circular 2,731,853 39.2 2,627 2,517 13 49 2 46 genome Treponema succinifaciens DSM 2489 plasmid pTRESU01 [SPIROCHAETAE] (CP002632) circular 165,572 38.7 164 164 - - - - genome Trichodesmium erythraeum IMS101 chromosome [CYANOBACTERIA] (CP000393) circular 7,750,108 34.1 4,844 4,394 5 38 3 404 genome Trichormus (Nostoc) azollae 0708 chromosome [CYANOBACTERIA] (CP002059) circular 5,354,700 38.4 5,096 3,931 12 42 1 1,110 genome Trichormus (Nostoc) azollae 0708 plasmid pAzo01 [CYANOBACTERIA] (CP002060) circular 109,570 35.7 93 46 - - - 47 genome Tropheryma whipplei TW08/27 chromosome [ACTINOBACTERIA] (BX072543) circular 925,938 46.3 898 839 3 50 2 4 genome Tropheryma whipplei Twist chromosome [ACTINOBACTERIA] (AE014184) circular 927,303 46.3 889 833 3 51 1 1 genome Truepera radiovictrix DSM 17093 chromosome [DEINOCOCCUS-THERMUS] (CP002049) circular 3,260,398 68.1 2,966 2,850 6 45 1 64 genome Trueperella pyogenes plasmid pAP1 [ACTINOBACTERIA] (U83788) circular 2,439 53.8 3 3 - - - - plasmid Trueperella pyogenes plasmid pAP2 [ACTINOBACTERIA] (AY255627) circular 9,304 58.4 8 8 - - - - plasmid Tsukamurella paurometabola DSM 20162 chromosome [ACTINOBACTERIA] (CP001966) circular 4,379,918 68.4 4,221 4,088 6 48 2 77 genome Tsukamurella paurometabola DSM 20162 plasmid pTpau01 [ACTINOBACTERIA] (CP001967) circular 99,806 67.8 86 84 - - - 2 genome Turneriella parva DSM 21527 chromosome [SPIROCHAETAE] (CP002959) circular 4,384,015 53.6 4,182 4,103 6 38 - 35 genome Turneriella parva DSM 21527 plasmid pTURPA.01 [SPIROCHAETAE] (CP002960) circular 25,287 53.1 29 29 - - - - genome uncultured bacterium plasmid pB10 [Environmental sample] (AJ564903) circular 64,508 64.2 65 65 - - - - plasmid uncultured bacterium plasmid PB11 [Environmental sample] (CP002152) circular 66,911 62.9 85 85 - - - - plasmid uncultured bacterium plasmid pB4 [Environmental sample] (AJ431260) circular 79,370 62.8 83 83 - - - - plasmid uncultured bacterium plasmid PB5 [Environmental sample] (CP002151) circular 64,696 62.4 82 82 - - - - plasmid uncultured bacterium plasmid pIE1115 [Environmental sample] (AJ293027) circular 10,687 56.2 11 11 - - - - plasmid uncultured bacterium plasmid pIE1130 [Environmental sample] (AJ271879) circular 10,687 57.0 12 12 - - - - plasmid uncultured bacterium plasmid pRSB101 [Environmental sample] (AJ698325) circular 47,829 56.4 45 45 - - - - plasmid uncultured bacterium plasmid PSP21 [Environmental sample] (CP002153) circular 72,683 62.2 83 83 - - - - plasmid uncultured bacterium plasmid pTB11 [Environmental sample] (AJ744860) circular 68,869 31.1 78 78 - - - - plasmid

54 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs uncultured bacterium plasmid pTP6 [Environmental sample] (AM048832) circular 54,344 64.8 67 67 - - - - plasmid uncultured bacterium plasmid pTRACA17 [human gut mobile metagenome] (AM263036) circular 2,745 49.6 2 2 - - - - plasmid uncultured bacterium plasmid pTRACA22 [human gut mobile metagenome] (FN429767) circular 5,903 51.4 9 9 - - - - plasmid uncultured bacterium plasmid pTRACA30 [human gut mobile metagenome] (FN429768) circular 10,827 49.6 18 18 - - - - plasmid uncultured Termite group 1 bacterium phylotype Rs-D17 chromosome [ELUSIMICROBIA] (AP009510) circular 1,125,857 35.2 809 761 3 45 - - genome Ureaplasma parvum sv. 3 ATCC 27815 chromosome [TENERICUTES] (CP000942) circular 751,679 25.5 644 601 6 30 2 5 genome Ureaplasma parvum sv. 3 ATCC 700970 chromosome [TENERICUTES] (AF222894) circular 751,719 25.5 646 593 6 30 3 14 genome Ureaplasma urealyticum sv. 10 ATCC 33699 chromosome [TENERICUTES] (CP001184) circular 874,478 25.8 692 644 6 30 1 11 genome Variovorax paradoxus EPS chromosome [PROTEOBACTERIA] (CP002417) circular 6,550,056 66.5 6,004 5,884 6 58 2 54 genome Variovorax paradoxus S110 chromosome1 [PROTEOBACTERIA] (CP001635) circular 5,626,353 67.6 5,259 5,172 6 48 2 31 genome Variovorax paradoxus S110 chromosome2 [PROTEOBACTERIA] (CP001636) circular 1,128,644 67.0 1,050 1,017 - 15 - 18 genome Veillonella parvula DSM 2008 chromosome [FIRMICUTES] (CP001820) circular 2,132,142 38.6 1,893 1,822 12 48 2 9 genome Verminephrobacter eiseniae EF01-2 chromosome [PROTEOBACTERIA] (CP000542) circular 5,566,749 65.3 4,875 4,648 9 47 3 167 genome Verminephrobacter eiseniae EF01-2 plasmid pVEIS01 [PROTEOBACTERIA] (CP000543) circular 31,194 58.6 43 43 - - - - genome Verrucosispora maris AB-18-032 chromosome [ACTINOBACTERIA] (CP002638) circular 6,673,976 70.9 5,894 5,710 9 50 1 124 genome Verrucosispora maris AB-18-032 plasmid pVMKU [ACTINOBACTERIA] (CP002639) circular 58,295 70.3 51 50 - - - 1 genome Vibrio alginolyticus plasmid pVAE259 [PROTEOBACTERIA] (GQ395338) circular 6,075 42.2 7 7 - - - - plasmid Vibrio anguillarum 775 chromosome1 [PROTEOBACTERIA] (CP002284) circular 3,063,912 44.6 2,798 2,589 20 82 1 106 genome Vibrio anguillarum 775 chromosome2 [PROTEOBACTERIA] (CP002285) circular 988,135 44.1 858 817 - 4 1 36 genome Vibrio anguillarum 775 plasmid pJM1 [PROTEOBACTERIA] (AY312585) circular 65,009 42.6 59 57 - - 2 - plasmid Vibrio anguillarum sv. O2 plasmid pLO2 [PROTEOBACTERIA] (AM238700) circular 7,941 41.7 10 10 - - - - plasmid Vibrio antiquarius sp. Ex25 chromosome1 [PROTEOBACTERIA] (CP001805) circular 3,259,580 44.9 2,994 2,842 31 111 1 9 genome Vibrio antiquarius sp. Ex25 chromosome2 [PROTEOBACTERIA] (CP001806) circular 1,829,445 44.9 1,588 1,562 3 13 - 10 genome Vibrio cholerae IEC224 chromosome1 [PROTEOBACTERIA] (CP003330) circular 3,007,450 47.7 2,795 2,667 25 94 1 8 genome Vibrio cholerae IEC224 chromosome2 [PROTEOBACTERIA] (CP003331) circular 1,072,136 46.9 1,023 1,010 - 4 - 9 genome Vibrio cholerae LMA3984-4 chromosome1 [PROTEOBACTERIA] (CP002555) circular 2,791,729 48.1 2,597 2,272 24 89 1 211 genome Vibrio cholerae LMA3984-4 chromosome2 [PROTEOBACTERIA] (CP002556) circular 946,986 47.6 874 804 - 3 - 63 genome Vibrio cholerae M66-2 chromosome1 [PROTEOBACTERIA] (CP001233) circular 2,892,523 47.8 2,665 2,533 22 93 1 16 genome Vibrio cholerae M66-2 chromosome2 [PROTEOBACTERIA] (CP001234) circular 1,046,382 47.0 991 972 - 4 - 8 genome Vibrio cholerae MJ-1236 chromosome1 [PROTEOBACTERIA] (CP001485) circular 3,149,584 47.5 2,917 2,782 22 94 1 18 genome Vibrio cholerae MJ-1236 chromosome2 [PROTEOBACTERIA] (CP001486) circular 1,086,784 46.7 1,038 1,023 - 4 - 6 genome Vibrio cholerae O1 2010EL-1786 chromosome1 [PROTEOBACTERIA] (CP003069) circular 3,031,375 47.7 2,791 2,685 22 75 1 8 genome Vibrio cholerae O1 2010EL-1786 chromosome2 [PROTEOBACTERIA] (CP003070) circular 1,046,365 47.0 992 977 - 4 - 6 genome Vibrio cholerae O1 bv. El Tor N16961 chromosome1 [PROTEOBACTERIA] (AE003852) circular 2,961,149 47.7 2,690 2,534 25 94 - 37 genome Vibrio cholerae O1 bv. El Tor N16961 chromosome2 [PROTEOBACTERIA] (AE003853) circular 1,072,315 46.9 1,003 970 - 4 - 29 genome Vibrio cholerae O395 chromosome1 [PROTEOBACTERIA] (CP000626) circular 1,108,250 46.9 1,071 1,046 - 4 - 17 genome Vibrio cholerae O395 chromosome1 [PROTEOBACTERIA] (CP001235) circular 3,024,078 47.8 2,844 2,702 25 92 1 24 genome Vibrio cholerae O395 chromosome2 [PROTEOBACTERIA] (CP000627) circular 3,024,069 47.8 2,846 2,701 25 92 2 26 genome Vibrio cholerae O395 chromosome2 [PROTEOBACTERIA] (CP001236) circular 1,111,222 46.9 1,075 1,050 - 4 - 17 genome Vibrio cholerae plasmid pSIO1 [PROTEOBACTERIA] (AY876057) circular 4,906 48.0 3 3 - - - - plasmid Vibrio cholerae plasmid pVCG1.2 [PROTEOBACTERIA] (DQ787204) circular 2,357 53.5 4 4 - - - - plasmid Vibrio fluvialis plasmid pBD146 [PROTEOBACTERIA] (EU574928) circular 7,472 42.0 6 6 - - - - plasmid Vibrio furnissii NCTC 11218 chromosome1 [PROTEOBACTERIA] (CP002377) circular 3,294,546 50.7 3,069 2,901 22 93 1 52 genome Vibrio furnissii NCTC 11218 chromosome2 [PROTEOBACTERIA] (CP002378) circular 1,621,862 50.5 1,472 1,450 - 5 - 17 genome Vibrio harveyi ATCC BAA-1116 chromosome1 [PROTEOBACTERIA] (CP000789) circular 3,765,351 45.5 3,481 3,231 29 105 1 115 genome Vibrio harveyi ATCC BAA-1116 chromosome2 [PROTEOBACTERIA] (CP000790) circular 2,204,018 45.3 2,021 1,875 3 16 - 127 genome Vibrio harveyi ATCC BAA-1116 plasmid pVIBHAR [PROTEOBACTERIA] (CP000791) circular 89,008 43.8 94 89 - - - 5 genome Vibrio nigripulchritudo plasmid pSFn1 [PROTEOBACTERIA] (EU156059) linear 11,237 45.5 10 10 - - - - plasmid Vibrio nigripulchritudo plasmid VIBNI_pA [PROTEOBACTERIA] (FP893246) circular 247,271 45.7 182 166 - - 1 15 plasmid Vibrio parahaemolyticus plasmid pSA19 [PROTEOBACTERIA] (D85144) circular 4,839 40.3 ------plasmid Vibrio parahaemolyticus RIMD 2210633 chromosome1 [PROTEOBACTERIA] (BA000031) circular 3,288,558 45.4 3,222 3,079 31 112 - - genome Vibrio parahaemolyticus RIMD 2210633 chromosome2 [PROTEOBACTERIA] (BA000032) circular 1,877,212 45.4 1,769 1,752 3 14 - - genome Vibrio shilonii plasmid pAK1 [PROTEOBACTERIA] (EU159455) linear 13,415 44.9 10 10 - - - - plasmid Vibrio sp. 09022 plasmid p09022A [PROTEOBACTERIA] (CP000757) circular 31,036 42.4 32 32 - - - - plasmid Vibrio sp. 0908 plasmid p0908 [PROTEOBACTERIA] (CP000756) circular 81,413 49.2 99 95 - - - 4 plasmid Vibrio sp. 23023 plasmid p23023 [PROTEOBACTERIA] (CP000755) circular 52,527 44.7 63 63 - - - - plasmid Vibrio sp. EJY3 chromosome1 [PROTEOBACTERIA] (CP003241) circular 3,478,307 45.0 3,164 3,003 25 107 1 28 genome Vibrio sp. EJY3 chromosome2 [PROTEOBACTERIA] (CP003242) circular 1,974,339 44.6 1,713 1,690 3 13 - 7 genome Vibrio tapetis plasmid pVT1 [PROTEOBACTERIA] (EU573358) circular 82,266 45.5 85 85 - - - - plasmid Vibrio tasmaniensis LGP32 chromosome1 [PROTEOBACTERIA] (FM954972) circular 3,299,303 44.0 2,957 2,799 22 97 3 36 genome Vibrio tasmaniensis LGP32 chromosome2 [PROTEOBACTERIA] (FM954973) circular 1,675,515 43.6 1,418 1,378 3 17 - 20 genome Vibrio vulnificus CMCP6 chromosome1 [PROTEOBACTERIA] (AE016795) circular 3,281,866 46.5 3,035 2,869 25 98 1 42 genome Vibrio vulnificus CMCP6 chromosome2 [PROTEOBACTERIA] (AE016796) circular 1,844,830 47.1 1,543 1,505 3 13 - 22 genome Vibrio vulnificus MO6-24/O chromosome1 [PROTEOBACTERIA] (CP002469) circular 3,194,232 46.7 2,973 2,826 25 100 1 21 genome Vibrio vulnificus MO6-24/O chromosome2 [PROTEOBACTERIA] (CP002470) circular 1,813,536 47.4 1,521 1,498 3 11 - 9 genome Vibrio vulnificus plasmid pC4602-1 [PROTEOBACTERIA] (AM293859) circular 56,628 45.2 69 69 - - - - plasmid Vibrio vulnificus plasmid pC4602-2 [PROTEOBACTERIA] (AM293860) circular 66,946 43.3 67 67 - - - - plasmid Vibrio vulnificus plasmid pR99 [PROTEOBACTERIA] (AM293858) circular 68,446 43.8 71 71 - - - - plasmid Vibrio vulnificus YJ016 chromosome1 [PROTEOBACTERIA] (BA000037) circular 3,354,505 46.4 3,111 2,952 25 100 3 31 genome Vibrio vulnificus YJ016 chromosome2 [PROTEOBACTERIA] (BA000038) circular 1,857,073 47.2 1,538 1,517 3 12 - 6 genome Vibrio vulnificus YJ016 plasmid pYJ016 [PROTEOBACTERIA] (AP005352) circular 48,508 44.9 54 54 - - - - genome Waddlia chondrophila WSU 86-1044 chromosome [CHLAMYDIAE] (CP001928) circular 2,116,312 43.8 1,889 1,828 6 37 1 17 genome Waddlia chondrophila WSU 86-1044 plasmid pWc [CHLAMYDIAE] (CP001929) circular 15,593 37.6 23 23 - - - - genome Weeksella virosa DSM 16922 chromosome [BACTEROIDETES] (CP002455) circular 2,272,954 35.9 2,164 2,061 15 59 2 27 genome Weissella cibaria plasmid pKLCA [FIRMICUTES] (AY188776) circular 1,490 41.7 1 1 - - - - plasmid Weissella koreensis KACC 15510 chromosome [FIRMICUTES] (CP002899) circular 1,422,478 35.5 1,375 1,299 15 55 - 6 genome Weissella koreensis KACC 15510 plasmid WKp2903 [FIRMICUTES] (CP002900) circular 18,992 36.7 20 20 - - - - genome Wigglesworthia glossinidia (Glossina brevipalpis) chromosome [PROTEOBACTERIA] (BA000021) circular 697,724 22.5 675 625 6 34 1 9 genome Wigglesworthia glossinidia (Glossina brevipalpis) plasmid pWb1 [PROTEOBACTERIA] (AB063523) circular 5,280 22.0 6 6 - - - - genome Wigglesworthia glossinidia (Glossina morsitans morsitans Yale colony) chromosome [PROTEOBACTERIA] (CP003315) circular 719,535 25.2 691 637 6 35 3 10 genome Wolbachia endosymbiont of Culex quinquefasciatus Pel chromosome [PROTEOBACTERIA] (AM999887) circular 1,482,455 34.2 1,382 1,273 3 34 1 71 genome Wolbachia endosymbiont of Drosophila melanogaster chromosome [PROTEOBACTERIA] (AE017196) circular 1,267,782 35.2 1,195 1,073 3 34 3 82 genome Wolbachia endosymbiont of Onchocerca ochengi Adamawa Cameroon chromosome [PROTEOBACTERIA] (HE660029) circular 957,990 32.1 721 643 3 34 2 39 genome Wolbachia endosymbiont str. TRS of Brugia malayi chromosome [PROTEOBACTERIA] (AE017321) circular 1,080,084 34.2 984 826 3 34 1 120 genome Wolbachia sp. wRi chromosome [PROTEOBACTERIA] (CP001391) circular 1,445,873 35.2 1,350 1,248 3 34 2 63 genome Wolinella succinogenes DSM 1740 chromosome [PROTEOBACTERIA] (BX571656) circular 2,110,355 48.5 2,102 2,034 9 40 1 18 genome Xanthobacter autotrophicus Py2 chromosome [PROTEOBACTERIA] (CP000781) circular 5,308,934 67.5 4,845 4,679 6 51 3 106 genome

55 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Xanthobacter autotrophicus Py2 plasmid pXAUT01 [PROTEOBACTERIA] (CP000782) circular 316,164 65.3 309 281 - - - 28 genome Xanthomonas albilineans GPE PC73 chromosome [PROTEOBACTERIA] (FP565176) circular 3,768,695 63.0 3,104 2,946 6 51 1 99 genome Xanthomonas albilineans GPE PC73 plasmid plasmI [PROTEOBACTERIA] (FP340279) circular 24,837 58.4 28 27 - - - 1 genome Xanthomonas albilineans GPE PC73 plasmid plasmII [PROTEOBACTERIA] (FP340278) circular 31,555 60.0 35 34 - - - 1 genome Xanthomonas albilineans GPE PC73 plasmid plasmIII [PROTEOBACTERIA] (FP340277) circular 27,212 57.3 31 31 - - - - genome Xanthomonas arboricola pv. pruni CFBP 5530 plasmid pXap41 [PROTEOBACTERIA] (FR875157) circular 41,102 62.3 44 43 - - - 1 plasmid Xanthomonas axonopodis pv. citri 306 chromosome [PROTEOBACTERIA] (AE008923) circular 5,175,554 64.8 4,406 4,232 6 54 2 100 genome Xanthomonas axonopodis pv. citri 306 plasmid pXAC33 [PROTEOBACTERIA] (AE008924) circular 33,700 61.9 36 34 - - - 2 genome Xanthomonas axonopodis pv. citri 306 plasmid pXAC64 [PROTEOBACTERIA] (AE008925) circular 64,920 61.4 65 61 - - - 4 genome Xanthomonas axonopodis pv. citrumelo F1 chromosome [PROTEOBACTERIA] (CP002914) circular 4,967,469 64.9 4,188 4,020 6 54 1 107 genome Xanthomonas axonopodis pv. glycines plasmid pAG1 [PROTEOBACTERIA] (AY780631) circular 15,143 62.4 16 16 - - - - plasmid Xanthomonas axonopodis pv. glycines plasmid pXAG81 [PROTEOBACTERIA] (AY780632) circular 26,721 61.4 34 34 - - - - plasmid Xanthomonas campestris pv. campestris 8004 chromosome [PROTEOBACTERIA] (CP000050) circular 5,148,708 65.0 4,381 4,248 6 54 1 72 genome Xanthomonas campestris pv. campestris ATCC 33913 chromosome [PROTEOBACTERIA] (AE008922) circular 5,076,188 65.1 4,240 4,179 6 53 2 - genome Xanthomonas campestris pv. campestris B100 chromosome [PROTEOBACTERIA] (AM920689) circular 5,079,002 65.0 4,334 4,202 6 54 1 71 genome Xanthomonas campestris pv. raphani 756C chromosome [PROTEOBACTERIA] (CP002789) circular 4,941,214 65.3 4,140 4,007 6 57 1 69 genome Xanthomonas campestris pv. vesicatoria 85-10 chromosome [PROTEOBACTERIA] (AM039952) circular 5,178,466 64.7 4,442 4,211 6 54 1 170 genome Xanthomonas campestris pv. vesicatoria 85-10 plasmid pXCV183 [PROTEOBACTERIA] (AM039951) circular 182,572 60.5 178 175 - 1 - 2 genome Xanthomonas campestris pv. vesicatoria 85-10 plasmid pXCV19 [PROTEOBACTERIA] (AM039949) circular 19,146 59.8 23 22 - 1 - - genome Xanthomonas campestris pv. vesicatoria 85-10 plasmid pXCV38 [PROTEOBACTERIA] (AM039950) circular 38,116 60.7 48 48 - - - - genome Xanthomonas citri plasmid pXcB [PROTEOBACTERIA] (AY228335) circular 37,106 60.8 38 38 - - - - plasmid Xanthomonas oryzae pv. oryzae KACC 10331 chromosome [PROTEOBACTERIA] (AE013598) circular 4,941,439 63.7 4,568 4,055 6 53 1 453 genome Xanthomonas oryzae pv. oryzae MAFF 311018 chromosome [PROTEOBACTERIA] (AP008229) circular 4,940,217 63.7 4,575 4,183 6 53 1 332 genome Xanthomonas oryzae pv. oryzae PXO99A chromosome [PROTEOBACTERIA] (CP000967) circular 5,238,555 63.6 4,798 4,375 6 54 1 362 genome Xanthomonas oryzae pv. oryzicola BLS256 chromosome [PROTEOBACTERIA] (CP003057) circular 4,831,746 64.1 4,161 3,755 6 54 1 345 genome Xenorhabdus bovienii SS-2004 chromosome [PROTEOBACTERIA] (FN667741) circular 4,225,498 45.0 3,769 3,536 22 82 2 127 genome Xenorhabdus nematophila ATCC 19061 chromosome [PROTEOBACTERIA] (FN667742) circular 4,432,590 44.2 3,923 3,569 22 79 2 251 genome Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p [PROTEOBACTERIA] (FN667743) circular 155,327 46.0 176 154 - - - 22 genome Xylanimonas cellulosilytica DSM 15894 chromosome [ACTINOBACTERIA] (CP001821) circular 3,742,776 72.5 3,382 3,254 9 52 2 65 genome Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01 [ACTINOBACTERIA] (CP001822) circular 88,604 71.0 98 98 - - - - genome Xylella fastidiosa 9a5c chromosome [PROTEOBACTERIA] (AE003849) circular 2,679,306 52.7 2,420 2,247 6 49 1 117 genome Xylella fastidiosa 9a5c plasmid pXF51 [PROTEOBACTERIA] (AE003851) circular 51,158 49.6 66 62 - - - 4 genome Xylella fastidiosa fastidiosa GB514 chromosome [PROTEOBACTERIA] (CP002165) circular 2,491,203 51.8 2,172 1,957 6 49 1 158 genome Xylella fastidiosa fastidiosa GB514 plasmid unnamed [PROTEOBACTERIA] (CP002166) circular 26,180 49.3 37 35 - - - 2 genome Xylella fastidiosa M12 chromosome [PROTEOBACTERIA] (CP000941) circular 2,475,130 51.9 2,187 2,054 6 50 2 75 genome Xylella fastidiosa M23 chromosome [PROTEOBACTERIA] (CP001011) circular 2,535,690 51.8 2,242 2,152 6 50 2 31 genome Xylella fastidiosa M23 plasmid pXFAS01 [PROTEOBACTERIA] (CP001012) circular 38,297 49.2 42 41 - - - 1 genome Xylella fastidiosa plasmid pXF-RIV11 [PROTEOBACTERIA] (GU938457) circular 25,105 49.0 33 33 - - - - plasmid Xylella fastidiosa plasmid pXF-RIV19 [PROTEOBACTERIA] (GU938459) circular 24,372 49.0 30 30 - - - - plasmid Xylella fastidiosa Temecula1 chromosome [PROTEOBACTERIA] (AE009442) circular 2,519,802 51.8 2,247 2,156 6 49 2 33 genome Yersinia enterocolitica enterocolitica 8081 chromosome [PROTEOBACTERIA] (AM286415) circular 4,615,899 47.3 4,171 3,952 22 82 40 74 genome Yersinia enterocolitica enterocolitica 8081 plasmid pYVe8081 [PROTEOBACTERIA] (AM286416) circular 67,721 43.9 88 71 - - - 17 genome Yersinia enterocolitica palearctica 105.5R(r) chromosome [PROTEOBACTERIA] (CP002246) circular 4,552,107 47.0 4,111 3,893 22 71 1 111 genome Yersinia enterocolitica palearctica 105.5R(r) plasmid 105.5R(r)p [PROTEOBACTERIA] (CP002247) circular 69,704 44.2 89 83 - - - 6 genome Yersinia enterocolitica palearctica Y11 chromosome [PROTEOBACTERIA] (FR729477) circular 4,553,420 47.0 4,133 3,907 22 69 1 122 genome Yersinia enterocolitica palearctica Y11 plasmid pYV03 [PROTEOBACTERIA] (FR745874) circular 72,460 44.0 94 86 - - - 8 genome Yersinia enterocolitica plasmid pYe4449-1 [PROTEOBACTERIA] (FJ696405) circular 4,357 53.7 6 6 - - - - plasmid Yersinia enterocolitica plasmid pYe4449-2 [PROTEOBACTERIA] (FJ696406) circular 14,662 54.9 14 14 - - - - plasmid Yersinia enterocolitica plasmid pYE854 [PROTEOBACTERIA] (AM905950) circular 95,499 42.2 232 232 - - - - plasmid Yersinia enterocolitica plasmid pYVe8081 [PROTEOBACTERIA] (AF336309) circular 67,720 43.9 67 66 - - - - plasmid Yersinia enterocolitica W22703 plasmid pYVa127/90 [PROTEOBACTERIA] (AY150843) circular 66,591 43.6 74 73 - - 1 - plasmid Yersinia enterocolitica W22703 plasmid pYVe227 [PROTEOBACTERIA] (AF102990) circular 69,673 44.2 69 69 - - - - plasmid Yersinia pestis A1122 chromosome [PROTEOBACTERIA] (CP002956) circular 4,553,770 47.6 4,219 4,069 18 67 1 57 genome Yersinia pestis A1122 plasmid unnamed [PROTEOBACTERIA] (CP002957) circular 96,210 50.2 108 107 - - 1 - genome Yersinia pestis A1122 plasmid unnamed [PROTEOBACTERIA] (CP002958) circular 8,431 44.0 9 9 - - - - genome Yersinia pestis Angola chromosome [PROTEOBACTERIA] (CP000901) circular 4,504,254 47.6 4,250 3,921 22 68 22 210 genome Yersinia pestis Angola new plasmid pCD [PROTEOBACTERIA] (CP000902) circular 68,190 44.6 86 84 - - 1 1 genome Yersinia pestis Angola plasmid pMT-pPCP [PROTEOBACTERIA] (CP000900) circular 114,570 50.0 130 120 - - 4 6 genome Yersinia pestis Antiqua chromosome [PROTEOBACTERIA] (CP000308) circular 4,702,289 47.7 4,346 4,146 22 66 1 105 genome Yersinia pestis Antiqua plasmid pCD [PROTEOBACTERIA] (CP000311) circular 70,299 44.8 88 87 - - - 1 genome Yersinia pestis Antiqua plasmid pMT [PROTEOBACTERIA] (CP000309) circular 96,471 50.2 107 104 - - 1 2 genome Yersinia pestis Antiqua plasmid pPCP [PROTEOBACTERIA] (CP000310) circular 10,777 45.4 11 11 - - - - genome Yersinia pestis bv. Medievalis str. Harbin 35 chromosome [PROTEOBACTERIA] (CP001608) circular 4,532,063 47.6 4,179 3,944 22 70 5 132 genome Yersinia pestis bv. Medievalis str. Harbin 35 plasmid pCD [PROTEOBACTERIA] (CP001609) circular 68,552 44.6 88 83 - - 1 4 genome Yersinia pestis bv. Medievalis str. Harbin 35 plasmid pMT [PROTEOBACTERIA] (CP001610) circular 99,286 50.2 110 108 - - 1 1 genome Yersinia pestis bv. Medievalis str. Harbin 35 plasmid pPCP [PROTEOBACTERIA] (CP001611) circular 9,600 45.3 10 9 - - - 1 genome Yersinia pestis bv. Microtus str. 91001 chromosome [PROTEOBACTERIA] (AE017042) circular 4,595,065 47.7 4,191 4,013 22 71 1 78 genome Yersinia pestis bv. Microtus str. 91001 plasmid pCD1 [PROTEOBACTERIA] (AE017043) circular 70,159 44.8 89 88 - - - 1 genome Yersinia pestis bv. Microtus str. 91001 plasmid pCRY [PROTEOBACTERIA] (AE017044) circular 21,742 49.1 28 27 - - - 1 genome Yersinia pestis bv. Microtus str. 91001 plasmid pMT1 [PROTEOBACTERIA] (AE017045) circular 106,642 50.3 119 115 - - 1 3 genome Yersinia pestis bv. Microtus str. 91001 plasmid pPCP1 [PROTEOBACTERIA] (AE017046) circular 9,609 45.3 10 10 - - - - genome Yersinia pestis bv. Orientalis str. IP275 plasmid pIP1202 [PROTEOBACTERIA] (CP000603) circular 182,913 52.9 225 217 - - - 8 plasmid Yersinia pestis CA88-4125 plasmid pCD1 [PROTEOBACTERIA] (CP000722) circular 70,305 44.8 91 89 - - 1 1 plasmid Yersinia pestis CA88-4125 plasmid pMT1 [PROTEOBACTERIA] (CP000723) circular 96,210 50.2 108 107 - - 1 - plasmid Yersinia pestis CO92 chromosome [PROTEOBACTERIA] (AL590842) circular 4,653,728 47.6 4,012 3,798 19 70 14 112 genome Yersinia pestis CO92 plasmid pCD1 [PROTEOBACTERIA] (AL117189) circular 70,305 44.8 102 71 - - 1 4 genome Yersinia pestis CO92 plasmid pMT1 [PROTEOBACTERIA] (AL117211) circular 96,210 50.2 107 101 - - - 3 genome Yersinia pestis CO92 plasmid pPCP1 [PROTEOBACTERIA] (AL109969) circular 9,612 45.3 9 9 - - - - genome Yersinia pestis D106004 chromosome [PROTEOBACTERIA] (CP001585) circular 4,640,720 47.6 4,267 4,000 19 68 1 173 genome Yersinia pestis D106004 plasmid pCD1 [PROTEOBACTERIA] (CP001586) circular 68,342 44.6 86 84 - - - 2 genome Yersinia pestis D106004 plasmid pMT1 [PROTEOBACTERIA] (CP001587) circular 94,249 50.2 105 103 - - 1 1 genome Yersinia pestis D106004 plasmid pPCY1 [PROTEOBACTERIA] (CP001588) circular 9,611 45.3 10 9 - - - 1 genome Yersinia pestis D182038 chromosome [PROTEOBACTERIA] (CP001589) circular 4,626,944 47.6 4,271 3,933 19 72 1 238 genome Yersinia pestis D182038 plasmid pCD1 [PROTEOBACTERIA] (CP001590) circular 69,665 44.7 88 87 - - - 1 genome Yersinia pestis D182038 plasmid pMT1 [PROTEOBACTERIA] (CP001591) circular 96,046 50.2 108 100 - - 1 7 genome Yersinia pestis D182038 plasmid pPCP1 [PROTEOBACTERIA] (CP001592) circular 9,608 45.3 10 9 - - - 1 genome Yersinia pestis Java 9 plasmid pCD [PROTEOBACTERIA] (CP002182) circular 77,072 45.4 122 116 - - - 6 plasmid

56 Other Replicon Shape Size (bp) GC% Genes Proteins rRNAs tRNAs Ψ Set RNAs Yersinia pestis Java 9 plasmid pJARS35 [PROTEOBACTERIA] (CP002179) circular 35,044 43.0 46 44 - - - 2 plasmid Yersinia pestis Java 9 plasmid pJARS36 [PROTEOBACTERIA] (CP002181) circular 36,085 46.8 51 51 - - - - plasmid Yersinia pestis Java 9 plasmid pPCP [PROTEOBACTERIA] (CP002180) circular 16,030 47.7 26 26 - - - - plasmid Yersinia pestis KIM10+ chromosome [PROTEOBACTERIA] (AE009952) circular 4,600,755 47.6 4,218 4,051 22 71 4 62 genome Yersinia pestis KIM10+ plasmid pCD1 [PROTEOBACTERIA] (AF053946) circular 70,504 44.8 66 64 - - - 2 genome Yersinia pestis KIM10+ plasmid pCD1 [PROTEOBACTERIA] (AF074612) circular 70,559 44.8 80 76 - - 1 3 genome Yersinia pestis KIM10+ plasmid pMT-1 [PROTEOBACTERIA] (AF074611) circular 100,990 50.2 114 112 - - 1 1 genome Yersinia pestis KIM10+ plasmid pMT1 [PROTEOBACTERIA] (AF053947) circular 100,984 50.2 78 78 - - - - genome Yersinia pestis KIM10+ plasmid pPCP1 [PROTEOBACTERIA] (AF053945) circular 9,610 45.3 5 5 - - - - plasmid Yersinia pestis Nepal516 chromosome [PROTEOBACTERIA] (CP000305) circular 4,534,590 47.6 4,176 4,017 22 70 1 60 genome Yersinia pestis Nepal516 plasmid pMT [PROTEOBACTERIA] (CP000306) circular 100,918 50.2 114 112 - - 1 1 genome Yersinia pestis Nepal516 plasmid pPCP [PROTEOBACTERIA] (CP000307) circular 10,778 45.4 11 11 - - - - genome Yersinia pestis Pestoides F chromosome [PROTEOBACTERIA] (CP000668) circular 4,517,345 47.6 4,158 3,951 22 70 12 97 genome Yersinia pestis Pestoides F plasmid pCD [PROTEOBACTERIA] (CP000669) circular 71,507 44.9 91 87 - - - 4 genome Yersinia pestis Pestoides F plasmid pMT [PROTEOBACTERIA] (CP000670) circular 137,010 52.0 148 145 - - 2 1 genome Yersinia pestis plasmid pG8786 [PROTEOBACTERIA] (AJ698720) circular 137,036 52.0 148 146 - - 1 1 plasmid Yersinia pestis plasmid pYC [PROTEOBACTERIA] (AF152923) circular 5,919 40.4 12 12 - - - - plasmid Yersinia pestis Z176003 chromosome [PROTEOBACTERIA] (CP001593) circular 4,553,586 47.7 4,214 4,058 19 67 1 62 genome Yersinia pestis Z176003 plasmid pCD1 [PROTEOBACTERIA] (CP001594) circular 68,342 44.6 86 85 - - - 1 genome Yersinia pestis Z176003 plasmid pMT1 [PROTEOBACTERIA] (CP001595) circular 94,251 50.2 105 104 - - 1 - genome Yersinia pseudotuberculosis IP 31758 chromosome [PROTEOBACTERIA] (CP000720) circular 4,723,306 47.5 4,230 3,995 22 82 26 97 genome Yersinia pseudotuberculosis IP 31758 plasmid_153kb [PROTEOBACTERIA] (CP000719) circular 153,140 40.4 159 156 - - - 3 genome Yersinia pseudotuberculosis IP 31758 plasmid_59kb [PROTEOBACTERIA] (CP000718) circular 58,679 40.2 68 68 - - - - genome Yersinia pseudotuberculosis IP 32953 chromosome [PROTEOBACTERIA] (BX936398) circular 4,744,671 47.6 4,272 4,074 22 82 15 71 genome Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953 [PROTEOBACTERIA] (BX936400) circular 27,702 44.6 32 32 - - - - genome Yersinia pseudotuberculosis IP 32953 plasmid pYV [PROTEOBACTERIA] (BX936399) circular 68,525 44.6 84 82 - - - 2 genome Yersinia pseudotuberculosis PB1/+ chromosome [PROTEOBACTERIA] (CP001048) circular 4,695,619 47.5 4,217 4,029 22 81 1 76 genome Yersinia pseudotuberculosis PB1/+ plasmid pYPTS01 [PROTEOBACTERIA] (CP001049) circular 69,812 44.7 85 83 - - - 2 genome Yersinia pseudotuberculosis plasmid pGDT4 [PROTEOBACTERIA] (FM178282) circular 94,967 48.6 100 100 - - - - genome Yersinia pseudotuberculosis YPIII chromosome [PROTEOBACTERIA] (CP000950) circular 4,689,441 47.5 4,272 4,062 22 80 1 99 genome Yersinia ruckeri plasmid pYR1 [PROTEOBACTERIA] (CP000602) circular 158,038 50.9 185 185 - - - - plasmid Zobellia galactanivorans chromosome [BACTEROIDETES] (FP476056) circular 5,521,712 42.8 4,497 4,407 6 40 1 43 genome Zunongwangia profunda SM-A87 chromosome [BACTEROIDETES] (CP001650) circular 5,128,187 36.2 4,471 4,336 9 49 1 76 genome Zymomonas mobilis mobilis ATCC 10988 chromosome [PROTEOBACTERIA] (CP002850) circular 2,021,773 46.2 1,815 1,731 6 48 2 27 genome Zymomonas mobilis mobilis ATCC 10988 plasmid pZMOB01 [PROTEOBACTERIA] (CP002851) circular 32,479 43.5 28 26 - - - 2 genome Zymomonas mobilis mobilis ATCC 10988 plasmid pZMOB02 [PROTEOBACTERIA] (CP002852) circular 32,283 45.4 27 24 - - - 3 genome Zymomonas mobilis mobilis ATCC 10988 plasmid pZMOB03 [PROTEOBACTERIA] (CP002853) circular 31,692 43.2 25 24 - - - 1 genome Zymomonas mobilis mobilis ATCC 10988 plasmid pZMOB04 [PROTEOBACTERIA] (CP002854) circular 18,461 41.8 27 26 - - - 1 genome Zymomonas mobilis mobilis ATCC 10988 plasmid pZMOB06 [PROTEOBACTERIA] (CP002856) circular 2,750 41.3 2 2 - - - - genome Zymomonas mobilis mobilis ATCC 10988 plasmid unknown [PROTEOBACTERIA] (X14438) circular 2,749 41.3 2 2 - - - - plasmid Zymomonas mobilis mobilis ATCC 29191 chromosome [PROTEOBACTERIA] (CP003704) circular 1,961,306 46.2 1,787 1,684 9 51 2 41 genome Zymomonas mobilis mobilis ATCC 29191 plasmid pZZ6.02 [PROTEOBACTERIA] (CP003706) circular 14,947 42.2 18 18 - - - - genome Zymomonas mobilis mobilis ATCC 29191 plasmid pZZ6.03 [PROTEOBACTERIA] (CP003707) circular 13,742 44.2 11 10 - - - 1 genome Zymomonas mobilis mobilis CP4 = NRRL B-14023 plasmid pCP4.2 [PROTEOBACTERIA] (EU709732) circular 32,623 43.3 28 27 - - - 1 plasmid Zymomonas mobilis mobilis NCIMB 11163 chromosome [PROTEOBACTERIA] (CP001722) circular 2,124,771 46.8 1,879 1,797 9 51 2 20 genome Zymomonas mobilis mobilis NCIMB 11163 plasmid pZA1001 [PROTEOBACTERIA] (CP001723) circular 53,380 42.3 53 51 - - - 2 genome Zymomonas mobilis mobilis NCIMB 11163 plasmid pZA1002 [PROTEOBACTERIA] (CP001724) circular 40,818 43.8 32 31 - - - 1 genome Zymomonas mobilis mobilis NCIMB 11163 plasmid pZA1003 [PROTEOBACTERIA] (CP001725) circular 4,551 36.4 6 6 - - - - genome Zymomonas mobilis mobilis ZM4 chromosome [PROTEOBACTERIA] (AE008692) circular 2,056,363 46.3 1,819 1,746 9 51 1 12 genome Zymomonas mobilis mobilis ZM4 plasmid 1 [PROTEOBACTERIA] (AY057845) circular 40,991 42.8 43 43 - - - - plasmid Zymomonas mobilis mobilis ZM4 plasmid pZZM401 [PROTEOBACTERIA] (CP001881) circular 37,066 42.4 53 51 - - - 2 plasmid Zymomonas mobilis mobilis ZM4 plasmid pZZM402 [PROTEOBACTERIA] (CP001882) circular 33,915 42.3 33 30 - - - 3 plasmid Zymomonas mobilis mobilis ZM4 plasmid pZZM403 [PROTEOBACTERIA] (CP001883) circular 32,801 43.3 25 21 - - - 4 plasmid Zymomonas mobilis mobilis ZM4 plasmid pZZM404 [PROTEOBACTERIA] (CP001884) circular 32,400 43.7 31 28 - - - 3 plasmid Zymomonas mobilis mobilis ZM4 plasmid pZZM405 [PROTEOBACTERIA] (CP001885) circular 30,952 43.7 27 26 - - - 1 plasmid Zymomonas mobilis pomaceae ATCC 29192 chromosome [PROTEOBACTERIA] (CP002865) circular 1,989,865 44.1 1,761 1,673 9 51 2 26 genome Zymomonas mobilis pomaceae ATCC 29192 plasmid pZYMOP01 [PROTEOBACTERIA] (CP002866) circular 37,387 41.0 38 37 - - - 1 genome Zymomonas mobilis pomaceae ATCC 29192 plasmid pZYMOP02 [PROTEOBACTERIA] (CP002867) circular 34,161 44.0 34 33 - - - 1 genome

57