Effect of Host Tree Species on Cellulase Activity and Bacterial Community Composition in the Gut of Larval Asian Longhorned Beetle
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A Rubber-Degrading Organism Growing from a Human Body
International Journal of Infectious Diseases (2010) 14, e75—e76 http://intl.elsevierhealth.com/journals/ijid CASE REPORT A rubber-degrading organism growing from a human body Mohit Gupta *, Deepali Prasad, Harshit S. Khara, David Alcid Department of Internal Medicine, Drexel University College of Medicine — Saint Peter’s University Hospital, 254 Easton Avenue, New Brunswick, NJ 08901, USA Received 24 October 2008; received in revised form 27 February 2009; accepted 3 March 2009 Corresponding Editor: Timothy Barkham, Tan Tock Seng, Singapore KEYWORDS Summary Patients with hematological malignancies are susceptible to unusual infections, Gordonia because of the use of broad-spectrum anti-infective agents, invasive procedures, and other polyisoprenivorans; immunocompromising procedures and medications. Gordonia polyisoprenivorans, a ubiquitous Pneumonia; environmental aerobic actinomycete belonging to the family of Gordoniaceae in the order Rubber-degrading Actinomycetales, is a very rare cause of bacteremia in these patients. We report the first case organism; of pneumonia with associated bacteremia due to this organism, which was initially described in Bacteremia; 1999 as a rubber-degrading bacterium following isolation from stagnant water inside a deterio- Leukemia rated automobile tire. We believe that hematologically immunocompromised patients on broad- spectrum antibiotics and with long-term central catheters select the possibility of infection with G. polyisoprenivorans. These infections can be prevented by handling catheters under aseptic conditions. We propose that blood cultures of persistently febrile neutropenic patients should be incubated for at least 4 weeks. Being a rare infection, there are no data available on treatment other than early removal of the foreign bodies. # 2009 International Society for Infectious Diseases. Published by Elsevier Ltd. -
Alpine Soil Bacterial Community and Environmental Filters Bahar Shahnavaz
Alpine soil bacterial community and environmental filters Bahar Shahnavaz To cite this version: Bahar Shahnavaz. Alpine soil bacterial community and environmental filters. Other [q-bio.OT]. Université Joseph-Fourier - Grenoble I, 2009. English. tel-00515414 HAL Id: tel-00515414 https://tel.archives-ouvertes.fr/tel-00515414 Submitted on 6 Sep 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE Pour l’obtention du titre de l'Université Joseph-Fourier - Grenoble 1 École Doctorale : Chimie et Sciences du Vivant Spécialité : Biodiversité, Écologie, Environnement Communautés bactériennes de sols alpins et filtres environnementaux Par Bahar SHAHNAVAZ Soutenue devant jury le 25 Septembre 2009 Composition du jury Dr. Thierry HEULIN Rapporteur Dr. Christian JEANTHON Rapporteur Dr. Sylvie NAZARET Examinateur Dr. Jean MARTIN Examinateur Dr. Yves JOUANNEAU Président du jury Dr. Roberto GEREMIA Directeur de thèse Thèse préparée au sien du Laboratoire d’Ecologie Alpine (LECA, UMR UJF- CNRS 5553) THÈSE Pour l’obtention du titre de Docteur de l’Université de Grenoble École Doctorale : Chimie et Sciences du Vivant Spécialité : Biodiversité, Écologie, Environnement Communautés bactériennes de sols alpins et filtres environnementaux Bahar SHAHNAVAZ Directeur : Roberto GEREMIA Soutenue devant jury le 25 Septembre 2009 Composition du jury Dr. -
Mycobacterium Tuberculosis Rv0366c-Rv0367c Encodes a Non
www.nature.com/scientificreports OPEN Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin- Received: 3 August 2018 Accepted: 27 November 2018 antitoxin pair Published: xx xx xxxx Himani Tandon 1, Arun Sharma2, Sankaran Sandhya1, Narayanaswamy Srinivasan1 & Ramandeep Singh2 Toxin-antitoxin (TA) systems are ubiquitously existing addiction modules with essential roles in bacterial persistence and virulence. The genome of Mycobacterium tuberculosis encodes approximately 79 TA systems. Through computational and experimental investigations, we report for the frst time that Rv0366c-Rv0367c is a non-canonical PezAT-like toxin-antitoxin system in M. tuberculosis. Homology searches with known PezT homologues revealed that residues implicated in nucleotide, antitoxin-binding and catalysis are conserved in Rv0366c. Unlike canonical PezA antitoxins, the N-terminal of Rv0367c is predicted to adopt the ribbon-helix-helix (RHH) motif for deoxyribonucleic acid (DNA) recognition. Further, the modelled complex predicts that the interactions between PezT and PezA involve conserved residues. We performed a large-scale search in sequences encoded in 101 mycobacterial and 4500 prokaryotic genomes and show that such an atypical PezAT organization is conserved in 20 other mycobacterial organisms and in families of class Actinobacteria. We also demonstrate that overexpression of Rv0366c induces bacteriostasis and this growth defect could be restored upon co-expression of cognate antitoxin, Rv0367c. Further, we also observed that inducible expression of Rv0366c in Mycobacterium smegmatis results in decreased cell-length and enhanced tolerance against a front-line tuberculosis (TB) drug, ethambutol. Taken together, we have identifed and functionally characterized a novel non-canonical TA system from M. tuberculosis. Bacterial toxin-antitoxin (TA) systems are plasmid or chromosome-encoded, mobile genetic elements expressed as part of the same operon1–3. -
Insect - Leaves - Trunks and Twigs - Roots - Animal - Nematodes
Biotic Problems - Disease - Bacterial - Fungal - Virus - Insect - Leaves - Trunks and twigs - Roots - Animal - Nematodes Anthracnose – 60 species, Fungal - Warm wet springs Sycamore, Dogwood, Maple Anthracnose Infects buds causing first leaves to shrivel, die and fall off. Trees can re-leaf but expend energy and lose time to do photosynthesis. Repeated outbreaks weaken trees. Cankers form on the tops of twigs and branches Anthracnose Damage Powdery Mildew Fungus, over 500 species Red Leaf Norway Maple Lilac Apples Warm days and cool nights Honey Locust Knot Bacterial, not much known, eventually fatal, sterilize tools Sequoiadendron giganteum Canker caused by Botryosphaeria dothidea, Joe Travis photo English Walnut Botryosphaeria and Phomopsis Cankers Coryneum Blight, aka Shothole Blight Stone fruit – cherry, plumb, peach, almond Damage to buds, twigs, leaves, blossoms, fruit PNW Plant Disease Handbook photos Fire Blight Bacteria Rose Family- Apples, Pears Wind & water, bees can carry, pruning can spread Moves quickly, population doubles quickly Significant damage to trees UC Davis photo Verticillum Wilt Fungal Effects over 80 species Stains tissue of branches and trunk Heat brings on symptoms Soil borne Maples are susceptible Impedes vascular system Don’t fertilize with high N Extra water Cytosproa Canker Bulls eye shape Peach apricot apple aspen Looks like callus, prune below canker 12” Trees loose vigor over a number of years PNW Handbook Nectria Canker 60 hosts Apple, ash, dogwood, honey locust, sweet gum, walnut Causes branch die back -
Co-Option and Detoxification of a Phage Lysin for Housekeeping Function Amelia Randich, David Kysela, Cécile Morlot, Yves Brun
Co-option and Detoxification of a Phage Lysin for Housekeeping Function Amelia Randich, David Kysela, Cécile Morlot, Yves Brun To cite this version: Amelia Randich, David Kysela, Cécile Morlot, Yves Brun. Co-option and Detoxification of a Phage Lysin for Housekeeping Function. 2018. hal-01930210 HAL Id: hal-01930210 https://hal.archives-ouvertes.fr/hal-01930210 Preprint submitted on 21 Nov 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. bioRxiv preprint first posted online Sep. 16, 2018; doi: http://dx.doi.org/10.1101/418723. The copyright holder for this preprint (which was not peer-reviewed) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license. 1 1 Title 2 Co-option and Detoxification of a Phage Lysin for Housekeeping Function 3 4 Authors 5 Amelia M. Randich, Indiana University, Bloomington, IN USA 6 David T. Kysela, Bloomington, IN USA 7 Cécile Morlot, Institut de Biologie Structurale (IBS), Université Grenoble Alpes, CEA, CNRS, 8 France 9 Yves V. Brun, Indiana University, Bloomington, IN USA 10 11 Correspondence: Y.V.B. -
Williamsia Soli Sp. Nov., Isolated from Thermal Power Plant in Yantai
Williamsia soli sp. nov., Isolated from Thermal Power Plant in Yantai Ming-Jing Zhang ShanDong University Xue-Han Li ShanDong University Li-Yang Peng ShanDong University Shuai-Ting Yun ShanDong University Zhuo-Cheng Liu ShanDong University Yan-Xia Zhou ( [email protected] ) Shandong University https://orcid.org/0000-0003-0393-8136 Research Article Keywords: Aerobic, Genomic Analysis, Predominant fatty acid, Soil, Thermal power plant, Williamsia soli sp. nov Posted Date: June 10th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-594776/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License 1 Williamsia soli sp. nov., isolated from thermal power plant in Yantai 2 Ming-Jing Zhang · Xue-Han Li · Li-Yang Peng · Shuai-Ting Yun · Zhuo-Cheng 3 Liu · Yan-Xia Zhou* 4 Marine College, Shandong University, Weihai 264209, China 5 *Correspondence: Yan-Xia Zhou; Email: [email protected] 6 Abstract 7 Strain C17T, a novel strain belonging to the phylum Actinobacteria, was isolated from 8 thermal power plant in Yantai, Shandong Province, China. Cells of strain C17T were 9 Gram-stain-positive, aerobic, pink, non-motile and round with neat edges. Strain C17T 10 was able to grow at 4–42 °C (optimum 28 °C), pH 5.5–9.5 (optimum 7.5) and with 11 0.0–5.0% NaCl (optimum 1.0%, w/v). Phylogenetically, the strain was a member of 12 the family Gordoniaceae, order Mycobacteriales, class Actinobacteria. Phylogenetic 13 analysis based on 16S rRNA gene sequence comparisons revealed that the closest 14 relative was the type strain of Williamsia faeni JCM 17784T with pair-wise sequence 15 similarity of 98.4%. -
(Coleoptera) of the Huron Mountains in Northern Michigan
The Great Lakes Entomologist Volume 19 Number 3 - Fall 1986 Number 3 - Fall 1986 Article 3 October 1986 Ecology of the Cerambycidae (Coleoptera) of the Huron Mountains in Northern Michigan D. C. L. Gosling Follow this and additional works at: https://scholar.valpo.edu/tgle Part of the Entomology Commons Recommended Citation Gosling, D. C. L. 1986. "Ecology of the Cerambycidae (Coleoptera) of the Huron Mountains in Northern Michigan," The Great Lakes Entomologist, vol 19 (3) Available at: https://scholar.valpo.edu/tgle/vol19/iss3/3 This Peer-Review Article is brought to you for free and open access by the Department of Biology at ValpoScholar. It has been accepted for inclusion in The Great Lakes Entomologist by an authorized administrator of ValpoScholar. For more information, please contact a ValpoScholar staff member at [email protected]. Gosling: Ecology of the Cerambycidae (Coleoptera) of the Huron Mountains i 1986 THE GREAT LAKES ENTOMOLOGIST 153 ECOLOGY OF THE CERAMBYCIDAE (COLEOPTERA) OF THE HURON MOUNTAINS IN NORTHERN MICHIGAN D. C. L Gosling! ABSTRACT Eighty-nine species of Cerambycidae were collected during a five-year survey of the woodboring beetle fauna of the Huron Mountains in Marquette County, Michigan. Host plants were deteTITIined for 51 species. Observations were made of species abundance and phenology, and the blossoms visited by anthophilous cerambycids. The Huron Mountains area comprises approximately 13,000 ha of forested land in northern Marquette County in the Upper Peninsula of Michigan. More than 7000 ha are privately owned by the Huron Mountain Club, including a designated, 2200 ha, Nature Research Area. The variety of habitats combines with differences in the nature and extent of prior disturbance to produce an exceptional diversity of forest communities, making the area particularly valuable for studies of forest insects. -
Marine Rare Actinomycetes: a Promising Source of Structurally Diverse and Unique Novel Natural Products
Review Marine Rare Actinomycetes: A Promising Source of Structurally Diverse and Unique Novel Natural Products Ramesh Subramani 1 and Detmer Sipkema 2,* 1 School of Biological and Chemical Sciences, Faculty of Science, Technology & Environment, The University of the South Pacific, Laucala Campus, Private Mail Bag, Suva, Republic of Fiji; [email protected] 2 Laboratory of Microbiology, Wageningen University & Research, Stippeneng 4, 6708 WE Wageningen, The Netherlands * Correspondence: [email protected]; Tel.: +31-317-483113 Received: 7 March 2019; Accepted: 23 April 2019; Published: 26 April 2019 Abstract: Rare actinomycetes are prolific in the marine environment; however, knowledge about their diversity, distribution and biochemistry is limited. Marine rare actinomycetes represent a rather untapped source of chemically diverse secondary metabolites and novel bioactive compounds. In this review, we aim to summarize the present knowledge on the isolation, diversity, distribution and natural product discovery of marine rare actinomycetes reported from mid-2013 to 2017. A total of 97 new species, representing 9 novel genera and belonging to 27 families of marine rare actinomycetes have been reported, with the highest numbers of novel isolates from the families Pseudonocardiaceae, Demequinaceae, Micromonosporaceae and Nocardioidaceae. Additionally, this study reviewed 167 new bioactive compounds produced by 58 different rare actinomycete species representing 24 genera. Most of the compounds produced by the marine rare actinomycetes present antibacterial, antifungal, antiparasitic, anticancer or antimalarial activities. The highest numbers of natural products were derived from the genera Nocardiopsis, Micromonospora, Salinispora and Pseudonocardia. Members of the genus Micromonospora were revealed to be the richest source of chemically diverse and unique bioactive natural products. -
Management Indicator Species of the Kaibab National Forest: an Evaluation of Population and Habitat Trends Version 3.0 2010
Management Indicator Species of the Kaibab National Forest: an evaluation of population and habitat trends Version 3.0 2010 Isolated aspen stand. Photo by Heather McRae. Pygmy nuthatch. Photo by the Smithsonian Inst. Pumpkin Fire, Kaibab National Forest Mule deer. Photo by Bill Noble Red-naped sapsucker. Photo by the Smithsonian Inst. Northern Goshawk © Tom Munson Tree encroachment, Kaibab National Forest Prepared by: Valerie Stein Foster¹, Bill Noble², Kristin Bratland¹, and Roger Joos³ ¹Wildlife Biologist, Kaibab National Forest Supervisor’s Office ²Forest Biologist, Kaibab National Forest, Supervisor’s Office ³Wildlife Biologist, Kaibab National Forest, Williams Ranger District Table of Contents 1. MANAGEMENT INDICATOR SPECIES ................................................................ 4 INTRODUCTION .......................................................................................................... 4 Regulatory Background ...................................................................................................... 8 Management Indicator Species Population Estimates ...................................................... 10 SPECIES ACCOUNTS ................................................................................................ 18 Aquatic Macroinvertebrates ...................................................................................... 18 Cinnamon Teal .......................................................................................................... 21 Northern Goshawk ................................................................................................... -
Cerambycidae of Tennessee
Cerambycidae of Tennessee! Disteniinae: Disteniini! Parandrinae: Parandriini! Closed circles represent previously published county records, museum specimen records, and specimens examined. Open circles are county records reported in Jamerson (1973) for which a specimen could not be located. Future collections are needed to substantiate these accounts. Fig. 2. Elytrimitatrix (Elytrimitatrix) undata (F.)! Fig. 3. Neandra brunnea (F.)! Prioninae: Macrotomini! Prioninae: Meroscheliscini! Fig. 4. Archodontes melanoplus melanoplus (L.)! Fig. 5. Mallodon dasystomus dasystomus Say! Fig. 6. Tragosoma harrisii (LeConte)! Prioninae: Prionini! Fig. 7. Derobrachus brevicollis Audinet-Serville! Fig. 8. Orthosoma brunneum (Forster)! Fig. 9. Prionus (Neopolyarthron) imbricornis (L.)! Prioninae! : Solenopterini! Fig. 10. Prionus (Prionus) laticollis (Drury) ! Fig. 11. Prionus (Prionus) pocularis Dalman ! Fig. 12. Sphenosethus taslei (Buquet) ! Necydalinae: Necydalini! Spondylidinae: Asemini! Fig. 13. Necydalis melitta (Say)! Fig. 14. Arhopalus foveicollis (Haldeman)! Fig. 15. Arhopalus rusticus obsoletus (Randall)! ! ! Suppl. Figs. 2-15. Tennessee county collection localities for longhorned beetle (Cerambycidae) species: Disteniinae, Parandrinae, Prioninae, Necydalinae, Spondylinae: Asemini (in part). ! Spondylidinae: Asemini (ctd.)! Fig. 16. Asemum striatum (L.)! Fig. 17. Tetropium schwarzianum Casey! Fig. 18. Atimia confusa confusa (Say)! ! Spondylidinae: Saphanini! Lepturinae: Desmocerini! Lepturinae: Encyclopini! Fig. 19. Michthisoma heterodoxum LeConte -
Characterization of Diverse Mechanisms of Salicin Degradation in Populus Microbiome Isolates
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 12-2019 Characterization of Diverse Mechanisms of Salicin Degradation in Populus Microbiome Isolates Sanjeev Dahal University of Tennessee, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Recommended Citation Dahal, Sanjeev, "Characterization of Diverse Mechanisms of Salicin Degradation in Populus Microbiome Isolates. " PhD diss., University of Tennessee, 2019. https://trace.tennessee.edu/utk_graddiss/5720 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by Sanjeev Dahal entitled "Characterization of Diverse Mechanisms of Salicin Degradation in Populus Microbiome Isolates." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Doctor of Philosophy, with a major in Life Sciences. Jennifer Morrell-Falvey, Major Professor We have read this dissertation and recommend its acceptance: Dale Pelletier, Sarah Lebeis, Cong Trinh, Daniel Jacobson Accepted for the Council: Dixie L. Thompson Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) Characterization of Diverse Mechanisms of Salicin Degradation in Populus Microbiome Isolates A Dissertation Presented for the Doctor of Philosophy Degree The University of Tennessee, Knoxville Sanjeev Dahal December 2019 Dedication I would like to dedicate this dissertation, first and foremost to my family. -
A Selective Bibliography on Insects Causing Wood Defects in Living Eastern Hardwood Trees By
Historic, Archive Document Do not assume content reflects current scientific knowledge, policies, or practices. V1 Inited States epartment of .griculture A SELECTIVE Forest Service BIBLIOGRAPHY ON Bibliographies and Literature of Agriculture No. 15 INSECTS CAUSING t»4 WOOD DEFECTS IN LIVING EASTERN HARDWOOD TREES o cr-r m c m TO CO ^ze- es* A Selective Bibliography on Insects Causing Wood Defects in Living Eastern Hardwood Trees by C. John Hay Research Entomologist Forestry Sciences Laboratory Northeastern Forest Experiment Station U.S. Department of Agriculture Forest Service Delaware, Ohio J. D. Solomon Principal Research Entomologist Southern Hardwoods Laboratory Southern Forest Experiment Station U.S. Department of Agriculture Forest Service Stoneville, Miss. Bibliographies and Literature of Agriculture No. 15 U.S. Department of Agriculture Forest Service July 1981 3 8 Contents Introduction 1 Tylonotus bimaculatus Haldeman, ash and Host Tree Species 2 privet borer 18 Hardwood Borers Xylotrechus aceris Fisher, gallmaking maple borer*. 1 General and miscellaneous species 4 Curculionidae Coleoptera Conotrachelus anaglypticus Say, cambium curculio . 18 General and miscellaneous species 7 Cryptorhynchus lapathi (Linnaeus), poplar-and- Brentidae willow borer* 18 Arrhenodes minutus (Drury), oak timbenvorm* .. 8 Lymexylonidae Buprestidae Melittomma sericeum (Harris), chestnut General and miscellaneous species 9 timbenvorm* 22 Agrilus acutipennis Mannerheim 9 Scolytidae Agrilus anxius Gory, bronze birch borer* 9 General and miscellaneous species