On the Cretaceous Origin of the Order Syracosphaerales and the Genus Syracosphaera
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
The Coccolithophore Family Calciosoleniaceae with Report of A
The coccolithophore family Calciosoleniaceae with report of a new species: Calciosolenia subtropicus from the southern Indian Ocean Shramik Patil, Rahul Mohan, Syed Jafar, Sahina Gazi, Pallavi Choudhari, Xavier Crosta To cite this version: Shramik Patil, Rahul Mohan, Syed Jafar, Sahina Gazi, Pallavi Choudhari, et al.. The coccolithophore family Calciosoleniaceae with report of a new species: Calciosolenia subtropicus from the southern Indian Ocean. Micropaleontology, Micropaleontology Press, 2019. hal-02323185 HAL Id: hal-02323185 https://hal.archives-ouvertes.fr/hal-02323185 Submitted on 22 Oct 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. The coccolithophore family Calciosoleniaceae with report of a new species: Calciosolenia subtropicus from the southern Indian Ocean Shramik Patil1, Rahul Mohan1, Syed A. Jafar2, Sahina Gazi1, Pallavi Choudhari1 and Xavier Crosta3 1National Centre for Polar and Ocean Research (NCPOR), Headland Sada, Vasco-da-Gama, Goa-403804, India email: [email protected] 2Flat 5-B, Whispering Meadows, Haralur Road, Bangalore-560 102, India 3UMR-CNRS 5805 EPOC, Université de Bordeaux, Allée Geoffroy Saint Hilaire, 33615 Pessac Cedex, France ABSTRACT: The families Calciosoleniaceae, Syracosphaeraceae and Rhabdosphaeraceae belong to the order Syracosphaerales and constitute a significant component of extant coccolithophore species, sharing similar ultrastructural bauplans. -
Observations on Syracosphaera Rhombica Sp. Nov
Disponible en ligne sur ScienceDirect www.sciencedirect.com Revue de micropaléontologie 59 (2016) 233–237 Coccolithophores in modern oceans Observations on Syracosphaera rhombica sp. nov. Observations sur Syracosphaera rhombica sp. nov. a b c,∗ Harald Andruleit , Aisha Ejura Agbali , Richard W. Jordan a Bundesanstalt für Geowissenschaften und Rohstoffe (BGR), Stilleweg 2, 30655 Hannover, Germany b Earth, Ocean and Atmospheric Science, Florida State University, P.O. Box 3064520, Tallahassee, FL 32306-4520, USA c Department of Earth & Environmental Sciences, Faculty of Science, Yamagata University, 1-4-12 Kojirakawa-machi, Yamagata 990-8560, Japan Abstract A spherical coccosphere and two collapsed coccospheres composed of monomorphic rhombic coccoliths were encountered in 2005 in the Java upwelling system of the SE Indian Ocean, while a further two specimens with elongate coccospheres were recently found in the Gulf of Mexico. All of the specimens were collected from the lower photic zone (75–160 m). The coccoliths possess a proximal flange, a slightly flared wall with a serrated distal margin, and a relatively plain central area structure comprised only of overlapping laths. The taxon appears to be an undescribed species of the Syracosphaera nodosa group, so we describe it herein as Syracosphaera rhombica sp. nov. © 2016 Published by Elsevier Masson SAS. Keywords: Coccolithophorid; Gulf of Mexico; Indian Ocean; Lower photic zone; Syracosphaera Résumé Une coccosphère sphérique (ainsi que deux coccosphères effondrées) composée de coccolithes rhombiques monomorphiques a été rencontrée en 2005 dans le système de remontée d’eaux profondes de Java dans l’océan Indien du Sud-Est, tandis que deux autres spécimens avec coccosphères allongées ont été récemment trouvées dans le golfe du Mexique. -
A Sea of Lilliputians
1 5/27/08 A Sea of Lilliputians by Marie-Pierre Aubry Department of Earth and Planetary Sciences Rutgers University 610 Taylor Road, Piscataway, New Jersey 08854-8066 and Department of Geology and Geophysics Woods Hole Oceanographic Institution Woods Hole Ma 02543 Fax: 732 445 3374, [email protected] Abstract Smaller size is generally seen as a negative response of organisms to stressful environmental conditions, associated with low diversity and species dominance. The mean size of the coccolithophorids decreased through the Neogene, leading to the prediction that their extant representatives are characterized by poor diversification and low specialization. The study of the (exo)coccospheres of selected taxa in the order Syracosphaerales negates this prediction, revealing that on the contrary some extant lineages are highly diversified and remarkably specialized. Whereas the general role of coccoliths remains indeterminate, this analysis suggests that some highly derived coccoliths may be modified for the collection of food particles, including picoplankton, thus implying that mixotrophy may characterize these lineages. In the extant coccolithophorids, species richness of genera is inversely correlated with the size of cells, definitive evidence that small size is part of a morphologic strategy rather than a sign of evolutionary failure. Because of their extreme minuteness, the extant nannoplankton can be well compared to Lilliputians, but the trend toward size decrease in Neogene lineages is not attributable to the Lilliput effect described by Urbanek (1993). 2 5/27/08 Key words: Extant coccolithophorids, Neogene, size, exococcospheres, functional morphology, mixotrophy. 1. Introduction Cope’s law, which in its broadest concept states that the size of organisms increases as lineages diversify, is generally regarded as prevalent among organisms despite a considerable debate as to its significance (e.g., Stanley, 1973, Gould, 1997, Jablonski, 1997, Alroy, 1998, Trammer, 2002). -
A 15 Million-Year Long Record of Phenotypic Evolution in the Heavily Calcified Coccolithophore Helicosphaera and Its Biogeochemical Implications
A 15 million-year long record of phenotypic evolution in the heavily calcified coccolithophore Helicosphaera and its biogeochemical implications 5 Luka Šupraha1, a, Jorijntje Henderiks1, 2 1 Department of Earth Sciences, Uppsala University, Villavägen 16, SE-752 36 Uppsala, Sweden. 2 Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, P.O. Box 1066 Blindern, 0316 Oslo, Norway. a Present address: Section for Aquatic Biology and Toxicology (AQUA), Department of Biosciences, University of Oslo, P.O. 10 Box 1066 Blindern, 0316 Oslo, Norway Correspondence to: Luka Šupraha ([email protected]) Abstract. The biogeochemical impact of coccolithophores is defined by their overall abundance in the oceans, but also by a wide range in physiological traits such as cell size, degree of calcification and carbon production rates between different species. Species’ “sensitivity” to environmental forcing has been suggested to relate to their cellular PIC:POC ratio and other 15 physiological constraints. Understanding both the short and longer-term adaptive strategies of different coccolithophore lineages, and how these in turn shape the biogeochemical role of the group, is therefore crucial for modeling the ongoing changes in the global carbon cycle. Here we present data on the phenotypic evolution of a large and heavily-calcified genus Helicosphaera (order Zygodiscales) over the past 15 million years (Ma), at two deep-sea drill sites from the tropical Indian Ocean and temperate South Atlantic. The modern species Helicosphaera carteri, which displays eco-physiological adaptations 20 in modern strains, was used to benchmark the use of its coccolith morphology as a physiological proxy in the fossil record. -
Calcareous Nannoplankton As a Tracer of the Marine Influence on the NW Coast of Portugal Over the Last 14 000 Years
J. Nannoplankton Res. 27 (2), 2005, pp.159-172 © 2005 International Nannoplankton Association 159 ISSN 1210-8049 Printed by Cambridge University Press, UK Calcareous nannoplankton as a tracer of the marine influence on the NW coast of Portugal over the last 14 000 years C. Guerreiro Centre of Geology, University of Lisbon, Building C6, 6.4.67, Campo Grande, 1749-016 Lisboa, Portugal; [email protected] M. Cachão Centre of Geology, University of Lisbon, Building C6, 6.4.67, Campo Grande, 1749-016 Lisboa, Portugal & Department of Geology, Faculty of Sciences, University of Lisbon, Building C6, 6.4.55, Campo Grande, 1749-016 Lisboa, Portugal T. Drago INIAP, IPIMAR, CRIPSUL, 8700-305 Olhão, Portugal Manuscript received 22nd March, 2005; revised manuscript accepted 19th August, 2005 Abstract A calcareous nannoplankton taphonomic and palaeoecological study was performed on cores from the Minho and Douro Estuaries (NW Portugal) and from the NW Portuguese middle continental shelf. Because certain nannoplankton species are taphonomically resistant to the highly energetic and aggressive conditions between the estuaries and the shelf, their sedimentary record acts as an oceanic tracer in such coastal domains. For the Late Quaternary, this allows interpretation of eustatic variation from the induced sequence of palaeoenvironmental changes. Palaeogeographically, the time-series pattern of nannofossil abundances in these coastal sediments is inter- preted as follows: (1) persistently high amounts of nannofossils (2x107 nannofossils/g) are related to marine envi- ronmental conditions, produced by post-glacial flooding of pre-existing valleys; (2) the gradual increase in intermit- tency of nannofossil abundances through time indicates a regressive trend, first due to recovery of the estuarine con- ditions, followed by a total absence of nannofossils, indicating evolution towards complete emersion either by flu- vial (Core CPF1) or barrier-beach sediments (Cores M1, M2, D1A and D1B). -
Haptophyte Diversity and Vertical Distribution Explored by 18S And
Received Date : 15-Sep-2016 Revised Date : 06-Dec-2016 Accepted Date : 07-Dec-2016 Article type : Original Article Gran-Stadniczeñko et al.--- Haptophyta Diversity and Distribution by Metabarcoding Haptophyte Diversity and Vertical Distribution Explored by 18S and 28S Ribosomal RNA Gene Metabarcoding and Scanning Electron Microscopy Sandra Gran-Stadniczeñko*a, Luka Šupraha*b, Elianne D. Eggea and Bente Edvardsena *equal contribution a Department of Biosciences, University of Oslo, PO Box 1066 Blindern, 0316 Oslo, Norway Article b Department of Earth Sciences, Uppsala University, Villavägen 16, SE-75236 Uppsala, Sweden Corresponding author S. Gran-Stadniczeñko, Department of Biosciences, University of Oslo, P. O. Box 1066 Blindern, 0316 Oslo, Norway Telephone number: +47-22-85-73-65, FAX number: 0047 22 85 47 26 e-mail: [email protected] ABSTRACT Haptophyta encompasses more than 300 species of mostly marine pico- and nanoplanktonic flagellates. Our aims were to investigate the Oslofjorden haptophyte diversity and vertical distribution by metabarcoding, and to improve the approach to study haptophyte community composition, richness and proportional abundance by comparing two rRNA markers and scanning electron microscopy (SEM). Samples were collected in August 2013 at the Outer Oslofjorden, Norway. Total RNA/cDNA was amplified by haptophyte-specific primers targeting the V4 region of the 18S, and the D1-D2 region of the 28S rRNA. Taxonomy was assigned using curated haptophyte This article has been accepted for publication and undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. -
Physiology Regulates the Relationship Between Coccosphere Geometry and Growth-Phase in Coccolithophores Rosie M
Physiology regulates the relationship between coccosphere geometry and growth-phase in coccolithophores Rosie M. Sheward1,2, Alex J. Poulton3, Samantha J. Gibbs1, Chris J. Daniels3, Paul R. Bown4 1 Ocean and Earth Science, University of Southampton, National Oceanography Centre, Southampton, SO14 3ZH, United 5 Kingdom. 2 Institute of Geosciences, Goethe-University Frankfurt, 60438 Frankfurt am Main, Germany. 3 Ocean Biogeochemistry and Ecosystems, National Oceanography Centre, Southampton, SO14 3ZH, United Kingdom. 4 Department of Earth Sciences, University College London, Gower Street, London, WC1E 6BT, United Kingdom. 10 Correspondence to: Rosie M. Sheward ([email protected]) Abstract. Coccolithophores are an abundant phytoplankton group that exhibit remarkable diversity in their biology, ecology, and calcitic exoskeletons (coccospheres). Their extensive fossil record is testament to their important biogeochemical role and is a valuable archive of biotic responses to environmental change stretching back over 200 million years. However, to 15 realise the full potential of this archive for (paleo-)biology and biogeochemistry requires an understanding of the physiological processes that underpin coccosphere architecture. Using culturing experiments on four modern coccolithophore species (Calcidiscus leptoporus, Calcidiscus quadriperforatus, Helicosphaera carteri and Coccolithus braarudii) from three long-lived families, we investigate how coccosphere architecture responds to shifts from exponential (rapid cell division) to stationary (slowed cell division) growth phases as cell physiology reacts to nutrient depletion. These 20 experiments reveal statistical differences in coccosphere size and the number of coccoliths per cell between these two growth phases, specifically that cells in exponential-phase growth are typically smaller with fewer coccoliths, whereas cells experiencing growth-limiting nutrient depletion have larger coccosphere sizes and greater numbers of coccoliths per cell. -
Novel Heterococcolithophores, Holococcolithophores and Life Cycle Combinations from the Families Syracosphaeraceae and Papposphaeraceae and the Genus Florisphaera
J. Micropalaeontology, 40, 75–99, 2021 https://doi.org/10.5194/jm-40-75-2021 © Author(s) 2021. This work is distributed under the Creative Commons Attribution 4.0 License. Novel heterococcolithophores, holococcolithophores and life cycle combinations from the families Syracosphaeraceae and Papposphaeraceae and the genus Florisphaera Sabine Keuter1,2, Jeremy R. Young3, Gil Koplovitz1, Adriana Zingone4, and Miguel J. Frada1,2 1The Interuniversity Institute for Marine Sciences in Eilat, POB 469, 88103 Eilat, Israel 2Dept. of Ecology, Evolution and Behavior – Alexander Silberman Institute of Life Sciences, Hebrew University of Jerusalem, 91904 Jerusalem, Israel 3Department of Earth Sciences, University College London, Gower Street, London WC1E 6BT, UK 4Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy Correspondence: Miguel J. Frada ([email protected]) and Jeremy R. Young ([email protected]) Received: 14 April 2021 – Revised: 18 June 2021 – Accepted: 22 June 2021 – Published: 18 August 2021 Abstract. Coccolithophores are a diverse group of calcifying phytoplankton, which are responsible for a large part of the modern oceanic carbonate production. Here, we describe novel or poorly known coccolithophores and novel life cycle combination coccospheres detected in samples collected either in the Gulf of Aqaba in the northern Red Sea or in the Gulf of Naples in the western Mediterranean. These include Syracosphaera win- teri, for which detached coccoliths have previously been recorded but both a formal description and taxonomic affiliation were lacking, and five undescribed sets of combination cells linking HET and HOL forms for S. pul- chra, S. mediterranea, S. azureaplaneta, S. lamina and S. orbicula. We also propose the replacement name S. -
Calcification Patterns of the Coccolithophore Coccolithus Braarudii (Haptophyta), from the Late Quaternary to Present in the Southern Ocean
Calcification patterns of the coccolithophore Coccolithus braarudii (Haptophyta), from the late Quaternary to present in the Southern Ocean by Joana Carolina Cubillos BSc. Hons., University of Tasmania Submitted in fulfilment of the requirements for the degree of Doctor of Philosophy University of Tasmania June, 2013 Declaration of Originality I declare that the material presented in this thesis is original, except where due acknowledgement is given, and has not been accepted for award of any other degree or diploma ___________________________ Joana Carolina Cubillos June, 2013 i Authority of Access This thesis may be available for loan and limited copying in accordance with the Copyright Act 1968 ___________________________ Joana Carolina Cubillos June, 2013 ii Statement regarding published work contained in the thesis The publishers of the paper comprising Chapter 2 hold the copyright for that content, and access to the material should be sought from the respective journals. The remaining non-published content of the thesis may be made available for loan and limited copying and communication in accordance with the Copyright Act 1968. iii Statement of authorship (Chapter 2) The following people contributed to the publication of the work undertaken as part of this thesis: Joana C. Cubillos (candidate) (50%), Jorijntje Henderiks (author 2) (35%), Luc Beaufort (author 3) (2.5%), Will R. Howard (author 4) (2.5%), Gustaaf Hallegraeff (author 5) (10%) Details of authors roles: Joana C. Cubillos (the candidate) and Jorijntje Henderiks contributed to the idea, method development and method refinement, presentation and formalization. Luc Beaufort contributed to the original idea and training on the original methodology. Gustaaf Hallegraeff contributed with his expertise, feedback, laboratory facilities, presentation and formalization. -
The Potential of Fossil Coccospheres in Coccolithophore Research Bown
Coccolithophores 2014 - workshop volume 5 Searching for cells: the potential of fossil coccospheres in coccolithophore research Paul R. Bown Department of Earth Sciences, University College London, Gower Street, London WC1E 6BT, UK; [email protected] Samantha J. Gibbs, Rosie Sheward, Sarah O’dea and david Higgins Ocean and Earth Science, National Oceanography Centre, Southampton, University of Southampton, Southampton, SO14 3ZH, UK. Abstract: The majority of fossil coccolithophore studies are based on disaggregated coccoliths but preserved complete coccospheres provide documentation of true cellular traits (cell size, numbers of coccoliths per cell and calcite quotas) and represent a relatively untapped archive of palaeobiological information. Coccospheres are more frequently present when coc- colith preservation is good or exceptional. Their preservation is dependent on a variety of taphonomic factors that combine to minimize the destructive effects of grazing and sinking, seafloor bioturbation and, finally, carbonate diagenesis. Clay-rich hemipelagic sediments that have not been deeply buried are particularly productive. Herein, we highlight the occurrences and potential of these coccosphere fossils and illustrate the range of morphologies we have so far encountered, predominantly from the Paleogene interval. Our observations show that coccosphere morphology is generally a conservative, long-lived character, with fossil representatives of living taxa (e.g., Braarudosphaera, Coccolithus, Helicosphaera, Reticulofenestra), all showing very similar coccosphere style back through their evolutionary history. In addition, we have also observed a variety of sphere shapes (ovoid, ellipsoidal, cylindrical) and significant coccolith polymorphism and varimorphism across a number of differ- ent families and in taxa for which fossil coccospheres have not previously been known. Fossil Acanthoica and Calciosolenia spheres, for example, indicate that polymorphism is a long-lived characteristic of the Syracosphaerales group. -
INA Newsletter Vol 15 Part 1 1993
15/1 NEWSLEIIEA INTERNATIONAL NANNOPLANKTON ASSOCIATION VOLUME 15 NUMBER 1 1993 THE INTERNATIONAL NANNOPLANKTON ASSOCIATION PRESIDENT NEWSLETTER EDITOR Katharina von Salis Perch-Nielsen Jeremy R. Young Geologisches lnstitut ETH-Z Palaeontology Dept. CH-8092 Zurich The Natural History Museum Switzerland London SW7 5BD, UK Fax. 41-(0)1-252-0819 Tel. 44-(0)71-938-8996 Fax. 44-(0)71-938-9277 SECRETARY EMAIL [email protected] Kevin Cooper Stratigraphic Services lnt. DEPUTY EDITOR Surrey Research Park PauiR.Bown Guildford GU2 5YL, UK Micropalaeontology Unit Fax 44-(0)483-311 06 University College London London WC1 E 6BT, UK TREASURER Fax. 44-(0)71-387-8057 Nicky Hine Industrial Palynology Unit BIBLIOGRAPHER Sheffield University William G. Siesser Mappin St. Dept. of Geology Sheffield S1 3JD, UK Vanderbilt University Fax . 44-(0)742-799088 Nashville Tennessee 37235, USA US TREASURER Stephan A. Root S!LICOFLAGELLATE BIBLIOGRAPHER Mobil EPSI Stacia Spaulding P.O. Box 650232 1929 Brighton Place Dallas Harvey Texas 75265-0232, USA Louisiana 70058, USA NOMENCLATURALSECRETARY ODPCORRESPONDENT Shirley E. van Heck John Firth Sarawak Shell Berhad Ocean Drilling Project Sabah Shell Petroleum Texas A&M University Lutong College Station Sarawak, Malaysia Texas 77840, USA INA MEMBERSHIP: Open to anyone interested, on receipt of subscription. Subscription is £12 (students £6) per annum. Send to Treasurer. Or $20 (Students $1 0), send to US Treasurer. Membership queries and changes of address send to Secretary. BIBLIOGRAPHIES: Please send reprints of any coccolith, calclsphere or silicoflagellate articles to the relevant bibliographer. BACK ISSUES: All issues available, except 7/2 and 11/2 (conference abstracts).