6.2. Paths and Cycles 6.2.1. Paths. a Path from V0 to Vn of Length N Is a Sequence of N+1 Vertices (Vk) and N Edges (Ek) Of
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												  Networkx: Network Analysis with PythonNetworkX: Network Analysis with Python Salvatore Scellato Full tutorial presented at the XXX SunBelt Conference “NetworkX introduction: Hacking social networks using the Python programming language” by Aric Hagberg & Drew Conway Outline 1. Introduction to NetworkX 2. Getting started with Python and NetworkX 3. Basic network analysis 4. Writing your own code 5. You are ready for your project! 1. Introduction to NetworkX. Introduction to NetworkX - network analysis Vast amounts of network data are being generated and collected • Sociology: web pages, mobile phones, social networks • Technology: Internet routers, vehicular flows, power grids How can we analyze this networks? Introduction to NetworkX - Python awesomeness Introduction to NetworkX “Python package for the creation, manipulation and study of the structure, dynamics and functions of complex networks.” • Data structures for representing many types of networks, or graphs • Nodes can be any (hashable) Python object, edges can contain arbitrary data • Flexibility ideal for representing networks found in many different fields • Easy to install on multiple platforms • Online up-to-date documentation • First public release in April 2005 Introduction to NetworkX - design requirements • Tool to study the structure and dynamics of social, biological, and infrastructure networks • Ease-of-use and rapid development in a collaborative, multidisciplinary environment • Easy to learn, easy to teach • Open-source tool base that can easily grow in a multidisciplinary environment with non-expert users
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												  1 Hamiltonian Path6.S078 Fine-Grained Algorithms and Complexity MIT Lecture 17: Algorithms for Finding Long Paths (Part 1) November 2, 2020 In this lecture and the next, we will introduce a number of algorithmic techniques used in exponential-time and FPT algorithms, through the lens of one parametric problem: Definition 0.1 (k-Path) Given a directed graph G = (V; E) and parameter k, is there a simple path1 in G of length ≥ k? Already for this simple-to-state problem, there are quite a few radically different approaches to solving it faster; we will show you some of them. We’ll see algorithms for the case of k = n (Hamiltonian Path) and then we’ll turn to “parameterizing” these algorithms so they work for all k. A number of papers in bioinformatics have used quick algorithms for k-Path and related problems to analyze various networks that arise in biology (some references are [SIKS05, ADH+08, YLRS+09]). In the following, we always denote the number of vertices jV j in our given graph G = (V; E) by n, and the number of edges jEj by m. We often associate the set of vertices V with the set [n] := f1; : : : ; ng. 1 Hamiltonian Path Before discussing k-Path, it will be useful to first discuss algorithms for the famous NP-complete Hamiltonian path problem, which is the special case where k = n. Essentially all algorithms we discuss here can be adapted to obtain algorithms for k-Path! The naive algorithm for Hamiltonian Path takes time about n! = 2Θ(n log n) to try all possible permutations of the nodes (which can also be adapted to get an O?(k!)-time algorithm for k-Path, as we’ll see).
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												  Matroid TheoryMATROID THEORY HAYLEY HILLMAN 1 2 HAYLEY HILLMAN Contents 1. Introduction to Matroids 3 1.1. Basic Graph Theory 3 1.2. Basic Linear Algebra 4 2. Bases 5 2.1. An Example in Linear Algebra 6 2.2. An Example in Graph Theory 6 3. Rank Function 8 3.1. The Rank Function in Graph Theory 9 3.2. The Rank Function in Linear Algebra 11 4. Independent Sets 14 4.1. Independent Sets in Graph Theory 14 4.2. Independent Sets in Linear Algebra 17 5. Cycles 21 5.1. Cycles in Graph Theory 22 5.2. Cycles in Linear Algebra 24 6. Vertex-Edge Incidence Matrix 25 References 27 MATROID THEORY 3 1. Introduction to Matroids A matroid is a structure that generalizes the properties of indepen- dence. Relevant applications are found in graph theory and linear algebra. There are several ways to define a matroid, each relate to the concept of independence. This paper will focus on the the definitions of a matroid in terms of bases, the rank function, independent sets and cycles. Throughout this paper, we observe how both graphs and matrices can be viewed as matroids. Then we translate graph theory to linear algebra, and vice versa, using the language of matroids to facilitate our discussion. Many proofs for the properties of each definition of a matroid have been omitted from this paper, but you may find complete proofs in Oxley[2], Whitney[3], and Wilson[4]. The four definitions of a matroid introduced in this paper are equiv- alent to each other.
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												  Graph Theory 1 Introduction6.042/18.062J Mathematics for Computer Science March 1, 2005 Srini Devadas and Eric Lehman Lecture Notes Graph Theory 1 Introduction Informally, a graph is a bunch of dots connected by lines. Here is an example of a graph: B H D A F G I C E Sadly, this definition is not precise enough for mathematical discussion. Formally, a graph is a pair of sets (V, E), where: • Vis a nonempty set whose elements are called vertices. • Eis a collection of twoelement subsets of Vcalled edges. The vertices correspond to the dots in the picture, and the edges correspond to the lines. Thus, the dotsandlines diagram above is a pictorial representation of the graph (V, E) where: V={A, B, C, D, E, F, G, H, I} E={{A, B} , {A, C} , {B, D} , {C, D} , {C, E} , {E, F } , {E, G} , {H, I}} . 1.1 Definitions A nuisance in first learning graph theory is that there are so many definitions. They all correspond to intuitive ideas, but can take a while to absorb. Some ideas have multi ple names. For example, graphs are sometimes called networks, vertices are sometimes called nodes, and edges are sometimes called arcs. Even worse, no one can agree on the exact meanings of terms. For example, in our definition, every graph must have at least one vertex. However, other authors permit graphs with no vertices. (The graph with 2 Graph Theory no vertices is the single, stupid counterexample to many wouldbe theorems— so we’re banning it!) This is typical; everyone agrees moreorless what each term means, but dis agrees about weird special cases.
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												  K-Path Centrality: a New Centrality Measure in Social NetworksCentrality Metrics in Social Network Analysis K-path: A New Centrality Metric Experiments Summary K-Path Centrality: A New Centrality Measure in Social Networks Adriana Iamnitchi University of South Florida joint work with Tharaka Alahakoon, Rahul Tripathi, Nicolas Kourtellis and Ramanuja Simha Adriana Iamnitchi K-Path Centrality: A New Centrality Measure in Social Networks 1 of 23 Centrality Metrics in Social Network Analysis Centrality Metrics Overview K-path: A New Centrality Metric Betweenness Centrality Experiments Applications Summary Computing Betweenness Centrality Centrality Metrics in Social Network Analysis Betweenness Centrality - how much a node controls the flow between any other two nodes Closeness Centrality - the extent a node is near all other nodes Degree Centrality - the number of ties to other nodes Eigenvector Centrality - the relative importance of a node Adriana Iamnitchi K-Path Centrality: A New Centrality Measure in Social Networks 2 of 23 Centrality Metrics in Social Network Analysis Centrality Metrics Overview K-path: A New Centrality Metric Betweenness Centrality Experiments Applications Summary Computing Betweenness Centrality Betweenness Centrality measures the extent to which a node lies on the shortest path between two other nodes betweennes CB (v) of a vertex v is the summation over all pairs of nodes of the fractional shortest paths going through v. Definition (Betweenness Centrality) For every vertex v 2 V of a weighted graph G(V ; E), the betweenness centrality CB (v) of v is defined by X X σst (v) CB
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												  Matroids You Have Known26 MATHEMATICS MAGAZINE Matroids You Have Known DAVID L. NEEL Seattle University Seattle, Washington 98122 [email protected] NANCY ANN NEUDAUER Pacific University Forest Grove, Oregon 97116 nancy@pacificu.edu Anyone who has worked with matroids has come away with the conviction that matroids are one of the richest and most useful ideas of our day. —Gian Carlo Rota [10] Why matroids? Have you noticed hidden connections between seemingly unrelated mathematical ideas? Strange that finding roots of polynomials can tell us important things about how to solve certain ordinary differential equations, or that computing a determinant would have anything to do with finding solutions to a linear system of equations. But this is one of the charming features of mathematics—that disparate objects share similar traits. Properties like independence appear in many contexts. Do you find independence everywhere you look? In 1933, three Harvard Junior Fellows unified this recurring theme in mathematics by defining a new mathematical object that they dubbed matroid [4]. Matroids are everywhere, if only we knew how to look. What led those junior-fellows to matroids? The same thing that will lead us: Ma- troids arise from shared behaviors of vector spaces and graphs. We explore this natural motivation for the matroid through two examples and consider how properties of in- dependence surface. We first consider the two matroids arising from these examples, and later introduce three more that are probably less familiar. Delving deeper, we can find matroids in arrangements of hyperplanes, configurations of points, and geometric lattices, if your tastes run in that direction.
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												  Incremental Dynamic Construction of Layered Polytree Networks )440 Incremental Dynamic Construction of Layered Polytree Networks Keung-Chi N g Tod S. Levitt lET Inc., lET Inc., 14 Research Way, Suite 3 14 Research Way, Suite 3 E. Setauket, NY 11733 E. Setauket , NY 11733 [email protected] [email protected] Abstract Many exact probabilistic inference algorithms1 have been developed and refined. Among the earlier meth ods, the polytree algorithm (Kim and Pearl 1983, Certain classes of problems, including per Pearl 1986) can efficiently update singly connected ceptual data understanding, robotics, discov belief networks (or polytrees) , however, it does not ery, and learning, can be represented as incre work ( without modification) on multiply connected mental, dynamically constructed belief net networks. In a singly connected belief network, there is works. These automatically constructed net at most one path (in the undirected sense) between any works can be dynamically extended and mod pair of nodes; in a multiply connected belief network, ified as evidence of new individuals becomes on the other hand, there is at least one pair of nodes available. The main result of this paper is the that has more than one path between them. Despite incremental extension of the singly connect the fact that the general updating problem for mul ed polytree network in such a way that the tiply connected networks is NP-hard (Cooper 1990), network retains its singly connected polytree many propagation algorithms have been applied suc structure after the changes. The algorithm cessfully to multiply connected networks, especially on is deterministic and is guaranteed to have networks that are sparsely connected. These methods a complexity of single node addition that is include clustering (also known as node aggregation) at most of order proportional to the number (Chang and Fung 1989, Pearl 1988), node elimination of nodes (or size) of the network.
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												  A Framework for the Evaluation and Management of Network Centrality ∗A Framework for the Evaluation and Management of Network Centrality ∗ Vatche Ishakiany D´oraErd}osz Evimaria Terzix Azer Bestavros{ Abstract total number of shortest paths that go through it. Ever Network-analysis literature is rich in node-centrality mea- since, researchers have proposed different measures of sures that quantify the centrality of a node as a function centrality, as well as algorithms for computing them [1, of the (shortest) paths of the network that go through it. 2, 4, 10, 11]. The common characteristic of these Existing work focuses on defining instances of such mea- measures is that they quantify a node's centrality by sures and designing algorithms for the specific combinato- computing the number (or the fraction) of (shortest) rial problems that arise for each instance. In this work, we paths that go through that node. For example, in a propose a unifying definition of centrality that subsumes all network where packets propagate through nodes, a node path-counting based centrality definitions: e.g., stress, be- with high centrality is one that \sees" (and potentially tweenness or paths centrality. We also define a generic algo- controls) most of the traffic. rithm for computing this generalized centrality measure for In many applications, the centrality of a single node every node and every group of nodes in the network. Next, is not as important as the centrality of a group of we define two optimization problems: k-Group Central- nodes. For example, in a network of lobbyists, one ity Maximization and k-Edge Centrality Boosting. might want to measure the combined centrality of a In the former, the task is to identify the subset of k nodes particular group of lobbyists.
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												  HABILITATION THESIS Petr Gregor Combinatorial Structures InHABILITATION THESIS Petr Gregor Combinatorial Structures in Hypercubes Computer Science - Theoretical Computer Science Prague, Czech Republic April 2019 Contents Synopsis of the thesis4 List of publications in the thesis7 1 Introduction9 1.1 Hypercubes...................................9 1.2 Queue layouts.................................. 14 1.3 Level-disjoint partitions............................ 19 1.4 Incidence colorings............................... 24 1.5 Distance magic labelings............................ 27 1.6 Parity vertex colorings............................. 29 1.7 Gray codes................................... 30 1.8 Linear extension diameter........................... 36 Summary....................................... 38 2 Queue layouts 51 3 Level-disjoint partitions 63 4 Incidence colorings 125 5 Distance magic labelings 143 6 Parity vertex colorings 149 7 Gray codes 155 8 Linear extension diameter 235 3 Synopsis of the thesis The thesis is compiled as a collection of 12 selected publications on various combinatorial structures in hypercubes accompanied with a commentary in the introduction. In these publications from years between 2012 and 2018 we solve, in some cases at least partially, several open problems or we significantly improve previously known results. The list of publications follows after the synopsis. The thesis is organized into 8 chapters. Chapter 1 is an umbrella introduction that contains background, motivation, and summary of the most interesting results. Chapter 2 studies queue layouts of hypercubes. A queue layout is a linear ordering of vertices together with a partition of edges into sets, called queues, such that in each set no two edges are nested with respect to the ordering. The results in this chapter significantly improve previously known upper and lower bounds on the queue-number of hypercubes associated with these layouts.
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												  HAMILTONICITY in CAYLEY GRAPHS and DIGRAPHS of FINITE ABELIAN GROUPS. Contents 1. Introduction. 1 2. Graph Theory: IntroductoryHAMILTONICITY IN CAYLEY GRAPHS AND DIGRAPHS OF FINITE ABELIAN GROUPS. MARY STELOW Abstract. Cayley graphs and digraphs are introduced, and their importance and utility in group theory is formally shown. Several results are then pre- sented: firstly, it is shown that if G is an abelian group, then G has a Cayley digraph with a Hamiltonian cycle. It is then proven that every Cayley di- graph of a Dedekind group has a Hamiltonian path. Finally, we show that all Cayley graphs of Abelian groups have Hamiltonian cycles. Further results, applications, and significance of the study of Hamiltonicity of Cayley graphs and digraphs are then discussed. Contents 1. Introduction. 1 2. Graph Theory: Introductory Definitions. 2 3. Cayley Graphs and Digraphs. 2 4. Hamiltonian Cycles in Cayley Digraphs of Finite Abelian Groups 5 5. Hamiltonian Paths in Cayley Digraphs of Dedekind Groups. 7 6. Cayley Graphs of Finite Abelian Groups are Guaranteed a Hamiltonian Cycle. 8 7. Conclusion; Further Applications and Research. 9 8. Acknowledgements. 9 References 10 1. Introduction. The topic of Cayley digraphs and graphs exhibits an interesting and important intersection between the world of groups, group theory, and abstract algebra and the world of graph theory and combinatorics. In this paper, I aim to highlight this intersection and to introduce an area in the field for which many basic problems re- main open.The theorems presented are taken from various discrete math journals. Here, these theorems are analyzed and given lengthier treatment in order to be more accessible to those without much background in group or graph theory.
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												  The Cube of Every Connected Graph Is 1-HamiltonianJOURNAL OF RESEARCH of the National Bureau of Standards- B. Mathematical Sciences Vol. 73B, No.1, January- March 1969 The Cube of Every Connected Graph is l-Hamiltonian * Gary Chartrand and S. F. Kapoor** (November 15,1968) Let G be any connected graph on 4 or more points. The graph G3 has as its point set that of C, and two distinct pointE U and v are adjacent in G3 if and only if the distance betwee n u and v in G is at most three. It is shown that not only is G" hamiltonian, but the removal of any point from G" still yields a hamiltonian graph. Key Words: C ube of a graph; graph; hamiltonian. Let G be a graph (finite, undirected, with no loops or multiple lines). A waLk of G is a finite alternating sequence of points and lines of G, beginning and ending with a point and where each line is incident with the points immediately preceding and followin g it. A walk in which no point is repeated is called a path; the Length of a path is the number of lines in it. A graph G is connected if between every pair of distinct points there exists a path, and for such a graph, the distance between two points u and v is defined as the length of the shortest path if u 0;1= v and zero if u = v. A walk with at least three points in which the first and last points are the same but all other points are dis tinct is called a cycle.
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												  A Survey of Line Graphs and Hamiltonian Paths Meagan FieldUniversity of Texas at Tyler Scholar Works at UT Tyler Math Theses Math Spring 5-7-2012 A Survey of Line Graphs and Hamiltonian Paths Meagan Field Follow this and additional works at: https://scholarworks.uttyler.edu/math_grad Part of the Mathematics Commons Recommended Citation Field, Meagan, "A Survey of Line Graphs and Hamiltonian Paths" (2012). Math Theses. Paper 3. http://hdl.handle.net/10950/86 This Thesis is brought to you for free and open access by the Math at Scholar Works at UT Tyler. It has been accepted for inclusion in Math Theses by an authorized administrator of Scholar Works at UT Tyler. For more information, please contact [email protected]. A SURVEY OF LINE GRAPHS AND HAMILTONIAN PATHS by MEAGAN FIELD A thesis submitted in partial fulfillment of the requirements for the degree of Master’s of Science Department of Mathematics Christina Graves, Ph.D., Committee Chair College of Arts and Sciences The University of Texas at Tyler May 2012 Contents List of Figures .................................. ii Abstract ...................................... iii 1 Definitions ................................... 1 2 Background for Hamiltonian Paths and Line Graphs ........ 11 3 Proof of Theorem 2.2 ............................ 17 4 Conclusion ................................... 34 References ..................................... 35 i List of Figures 1GraphG..................................1 2GandL(G)................................3 3Clawgraph................................4 4Claw-freegraph..............................4 5Graphwithaclawasaninducedsubgraph...............4 6GraphP .................................. 7 7AgraphCcontainingcomponents....................8 8Asimplegraph,Q............................9 9 First and second step using R2..................... 9 10 Third and fourth step using R2..................... 10 11 Graph D and its reduced graph R(D).................. 10 12 S5 and its line graph, K5 ......................... 13 13 S8 and its line graph, K8 ......................... 14 14 Line graph of graph P .........................