DOCSLIB.ORG

Genome-Resolved Metagenomic Analyses Reveal the Presence of a Bacterial Endosymbiont in an Avian Nasal Mite (Rhinonyssidae; Mesostigmata)

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Genome-Resolved Metagenomic Analyses Reveal the Presence of a Bacterial Endosymbiont in an Avian Nasal Mite (Rhinonyssidae; Mesostigmata) bioRxiv preprint doi: https://doi.org/10.1101/2021.07.12.452008; this version posted July 12, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Genome-resolved metagenomic analyses reveal the presence of a bacterial endosymbiont in an avian nasal mite (Rhinonyssidae; Mesostigmata) Carolina Osuna-Mascaró 1,, Jorge Doña 2,3, Kevin P. Johnson 2, Manuel de Ro as !," 1 De#ar$%en$ of Biology, )niversi$( of *evada, Reno+ [email protected] 2 -llinois *atural His$ory /urve(, Prairie Research -ns$i$u$e, )niversi$( o& -llinois at )r0ana-Cha%#aign, Cham#aign, )/1+ [email protected] 2 -llinois *atural His$ory /urve(, Prairie Research -ns$i$u$e, )niversi$( o& -llinois at )r0ana-Cha%#aign, Cham#aign, )/1+ 2# ohnso,illinois.edu 3De#ar$amen$o de Biología Ani%al, )niversidad de 4ranada, 4ranada, /#ain 4 De#ar$%en$ of Micro0iology and Parasi$olog(, 5acul$y of Phar%ac(, )niversidad de /evilla, /evilla, /#ain+ dero as,us.es Abstract: Rhinon(ssidae (Mesos$igmata) is a &amil( o& nasal mites onl( &ound in 0irds. 1ll species are hema$o#hagous endo#arasites, 8hich ma( damage $he nasal cavities o& 0irds, and also could 0e #o$ential reservoirs or vec$ors o& o$her infec$ions. Ho8ever, $he role o& me%0ers o& Rhinon(ssidae as disease vec$ors in 8ild 0ird #o#ulations remains uninves$igated, 8ith s$udies o& $he micro0iomes o& Rhinon(ssidae 0eing almos$ non-exis$ent. -n $he nasal mite 6Tinaminyssus melloi7 fro% roc2 doves 6Columba livia), a #revious s$ud( &ound evidence o& a highl( abundant #u$ativel( endosy%0io$ic 0ac$eria fro% Class 1lphapro$eo0ac$eria. Here, 8e e9#anded $he sam#le size o& $his species, incor#orated contamination controls, and increased se;uencing de#$h in sho$gun se;uencing and genome-resolved me$agenomic anal(ses. Our goal 8as $o increase $he information regarding $his mite species 8i$h its #u$ative endosy%0iont. Our results su##or$ $he endosy%0io$ic nature o& $his 0ac$erial $axon, 8hich is $he <rs$ described &or 0ird's nasal mites $o date, and im#rove $he overall unders$anding o& $he micro0io$a inhabiting these mites. *Corres#onding au$hors> COM> cosuna,unr.edu+ MR, e%ail> dero as,us.es Ke(8ords> Rhinonyssidae+ endos(%0ion$+ %e$ageno%ic; Brucella bioRxiv preprint doi: https://doi.org/10.1101/2021.07.12.452008; this version posted July 12, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1. Introd!ction Mites are one of the mos$ diverse grou#s of eu2ar(o$es on ear$h [1]. Mites are u0i;uitous, occu#(ing aquatic, terres$rial, and ar0oreal habitats [2-8]. On some occasions, mites have an intimate association (sy%0iosis) with a different organism, which, in the mos$ e9$re%e scenario (permanent sy%0ionts), re#resents the habitat in which the( undergo their entire life-c(cle [9]. For exam#le, a single species of insec$, mammal, or bird can o&$en hos$ several mite species and have different t(#es of interac$ions with the% [9, 10-12]. The nature of these interac$ions can range from mu$ualism (e.g., mites inhabiting and cleaning birds' feathers; [13]) to parasitism (e.g., mites inhabiting the nasal passages and lungs of seals causing illness $o the%+ [14, 15]). -n some cases, mites can affec$ the hos$'s heal$h and be responsible for transmit$ing zoono$ic diseases [9]. For exam#le, the itch mite Sarcoptes scabiei has caused the po#ulation decline of different mammal species b( transmit$ing scabies [16-19]. In ano$her case, Varroa destructor, a parasitic mite of the Asian hone(0ee (Apis cerana) has caused the decline of the Huro#ean hone(0ee b( transmit$ing a virus [20]. In some cases, disease transmission ma( be mediated b( endosy%0io$ic pa$hogens that inhabit the mites. One exa%#le of this mechanism is Leptotrombidium scutellare, a mite tha$ parasitizes mice and carries the endosy%0iont 0ac$eria Orientia tsutsugamushi, responsible for the scru0 t(#hus disease [21]. Endosy%0ionts as causal agents of diseases have also been widel( re#or$ed in tic2s [22-24]. Ho8ever, exa%#les of endosy%0ionts in mites are s$ill rare. Rhinon(ssidae (Mesos$igmata) is a famil( of nasal mites with more than 500 species described world8ide [25-28]. The( have been descri0ed from birds [29]. Almos$ all species of 0irds are inhabited b( nasal mites, which usuall( live in the nasal cavit( on vascularized e#i$helial tissue [9]. All rhinon(ssid species are hema$o#hagous endo#arasites [30]. /#ecificall(, rhinon(ssid mites damage the nasal cavities of birds, which, in rare cases, ma( lead to the death of the hos$s (Rhinon(ssidosis aviu% disease7 [28]. Moreover, it has been bioRxiv preprint doi: https://doi.org/10.1101/2021.07.12.452008; this version posted July 12, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. sugges$ed that these mites could be po$ential reservoirs or vec$ors of o$her infec$ions (such as Ies$ Nile fever, Q fever, avian influenza, and L(me diseases), as demons$rated in mites of the &amil( Derman(ssidae [31]. Ho8ever, the role of species of Rhinon(ssidae as disease vec$ors in wild bird po#ulations is ye$ to be unders$ood. In addition, s$udies on rhinon(ssid micro0iomes more generall( are almos$ non-exis$ent. -n a preliminar( previous s$ud(, the micro0iome of t8o different s#ecies of rhinon(ssid mites (Tinaminyssus melloi and Ptilonyssus chlori) from t8o different avian hos$ species 6Columba livia and Chloris chloris, respec$ivel(7 was charac$erized [32]. The results of that s$ud( sugges$ed that the nasal mite Tinaminyssus melloi har0ored a po$ential endosy%0iont 1lphapro$eo0ac$eria (Famil(: Bar$onellaceae) in a high abundance. Ho8ever, the lo8 se;uencing coverage, small sam#le size, and lac2 of control sam#les did no$ allo8 de<nitive conclusions to be made. In par$icular, onl( a par$ial (~26%) asse%0l( of the bac$erial genome 8as achieved, and it could no$ be ruled ou$ co%#le$el( if this bac$erial taxon came from the 0ird hos$ ins$ead of the mite. Here, we focused on e9#anding kno8ledge of the micro0iome of this mite species 6Tinaminyssus melloi), e%#hasizing increasing the information of its association wi$h this #u$ative endosy%0iont. In the current s$ud(, we e9#anded the sam#le size, used contamination controls, and increased se;uencing de#$h. In par$icular, we collec$ed t8o mite #ools (five mite individuals per pool) plus a control bird saliva sam#le from t8o different individual Roc2 doves (Columba livia). Then, we conduc$ed sho$gun and genome-resolved me$agenomic anal(ses to charac$erize the miteOs micro0iome along with evaluating the genome pro#er$ies of this bac$erial taxon, which ma( be informative regarding its endosy%0io$ic s$atus. 2. Materials and Methods 1 to$al of ten nasal mites were collec$ed from t8o different freshl( dead Columba livia individuals (i.e., 5 mites per individual hos$). The nasal cavities of the birds were dissec$ed bioRxiv preprint doi: https://doi.org/10.1101/2021.07.12.452008; this version posted July 12, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. under a s$ereomicrosco#e, and the mites were taxonomicall( identified. A saliva sam#le was also collec$ed from each individual. Mite and saliva sam#les were preserved at -20°C in tu0es 8i$h 100% e$hanol. 'e&ore DN1 isolation, sam#les were washed three times with e$hanol to remove #ossible e9$ernal contaminants follo8ing [13] and [33]. To$al genomic DN1 was isolated fro% all sam#les using the Quic2-DN1 MicroPre# kit (Z(mo), specificall( designed to isolate DN1 from small sam#les. A sam#le that did no$ contain tissue was included and treated as a regular sam#le to chec2 for cross-contamination during the DN1 isolation procedure. To$al DN1 was quantified using the Qu0it High Sensitivit( dsDN1 Assa( (Thermo Fisher Scientific). Libraries were pre#ared using the Ne9$era DN1 Flex Librar( Pre# kit (Illumina), s$ric$l( follo8ing the manu&ac$urer's ins$ruc$ions. BrieK(, DN1 was enzymaticall( cu$, and ada#$ers were added in a single s$e#. The ligated DN1 was am#lified, and oligonucleo$ide indices were added to bo$h ends of the frag%ents for pos$-se;uencing de%ultiplexing. The cons$ruc$ed libraries were quantified with the Qu0it dsDN1 HT Assa( kit (Ehermo Scientific), and qualit( chec2ed on an Agilent 2100 Bioanal(zer (Agilent Technologies). According to the Ju0it results, the libraries were pooled in e;uimolar amounts, and this pool was se;uenced on a NovaSe; PH150 single lane frac$ion (Illumina), aiming for a to$al ou$#u$ of 30 gigabases. Ehe DN1 isolation, am#lification, librar( pre#ara$ion, and whole-genome se;uencing were carried ou$ in AllGene$ics & Biolog( SL (w88.allgene$ics.eu). 5or the genome-resolved me$agenomic anal(ses, we trimmed the ra8 reads using fas$# [34].
Load more

Recommended publications
  • Molecular Epidemiology of House Dust Mites In
    MOLECULAR EPIDEMIOLOGY OF HOUSE DUST MITES IN POTHWAR, PAKISTAN RUBABA SHAFIQUE 10-arid-1986 Department of Zoology/Biology Faculty of Sciences Pir Mehr Ali Shah Arid Agriculture University Rawalpindi Pakistan 2018 MOLECULAR EPIDEMIOLOGY OF HOUSE DUST MITES IN POTHWAR, PAKISTAN by RUBABA SHAFIQUE (10-arid-1986) A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Zoology Department of Zoology/Biology Faculty of Sciences Pir Mehr Ali Shah Arid Agriculture University Rawalpindi Pakistan 2018 CERTIFICATION I hereby undertake that this research is an original and no part of this thesis fall under plagiarism. If found otherwise, at any stage, I will be responsible for the consequences. Name: Rubaba Shafique Signature: ______________________ Registration No: 10-arid-1986 Date: __________________________ Certified that, the contents and form of thesis entitled “Molecular Epidemiology of House Dust Mites in Pothwar, Pakistan” submitted by Ms. Rubaba Shafique have been found satisfactory for the requirement of degree. Supervisor: ______________________ (Dr. Shamim Akhter) Co-Supervisor: ______________________ (Dr. Muhammad Ismail) Member: ______________________ (Prof. Dr. Mazhar Qayyum) Member: ______________________ (Dr. Farhana Riaz Ch.) Member: _____________________ (Prof. Dr. Azra Khanum) Chairman: ________________ Dean: ____________________ Director Advanced Studies: _________________________ ii Dedicated to my beloved mother and my sweet family who stood by me throughout my PhD iii CONTENTS
    [Show full text]
  • Host–Parasite Relationships and Co-Infection of Nasal Mites of Chrysomus Ruficapillus (Passeriformes: Icteridae) in Southern Brazil
    Iheringia Série Zoologia Museu de Ciências Naturais e-ISSN 1678-4766 www.scielo.br/isz Fundação Zoobotânica do Rio Grande do Sul Host–Parasite relationships and co-infection of nasal mites of Chrysomus ruficapillus (Passeriformes: Icteridae) in southern Brazil Fabiana Fedatto Bernardon1 , Carolina S. Mascarenhas1 , Joaber Pereira Jr2 & Gertrud Müller1 1. Laboratório de Parasitologia de Animais Silvestres (LAPASIL), Departamento de Microbiologia e Parasitologia, Instituto de Biologia, Universidade Federal de Pelotas, Caixa Postal 354, 96010-900, Pelotas, RS, Brazil. ([email protected]) 2. Laboratório de Biologia de Parasitos de Organismos Aquáticos (LABPOA), Instituto de Oceanografia, Universidade Federal do Rio Grande, Caixa Postal 474, 96650-900 Rio Grande, Rio Grande do Sul, Brazil Received 14 December 2017 Accepted 8 May 2018 Published 21 June 2018 DOI: 10.1590/1678-4766e2018025 ABSTRACT. One hundred twenty-two Chrysomus ruficapillus were examined in southern Brazil, in order to research the presence of nasal mites and the parasite-host relationships. Nasal mite infections were analyzed for: presence of Ereynetidae and Rhinonyssidae considering the total number of hosts examined; Sexual maturity of males (juveniles and adults); Periods of bird collection and presence of co-infections. Were identified five taxa, four belongs to Rhinonyssidae (Sternostoma strandtmanni, Ptilonyssus sairae, P. icteridius and Ptilonyssus sp.) and one to Ereynetidae (Boydaia agelaii). Adult males were parasitized for one taxa more than juvenile males. Co-infections occurred in 22 hosts, between two, three and four taxa, belonging to Ereynetidae and Rhinonyssidae.The co-infections were more prevalent in austral autumn / winter. The host-parasite relations and co-infections by nasal mites in C.
    [Show full text]
  • Rhinonyssidae (Acari) in the House Sparrows, Passer Domesticus
    Short Communication ISSN 1984-2961 (Electronic) www.cbpv.org.br/rbpv Braz. J. Vet. Parasitol., Jaboticabal, v. 27, n. 4, p. 597-603, oct.-dec. 2018 Doi: https://doi.org/10.1590/S1984-296120180064 Rhinonyssidae (Acari) in the house sparrows, Passer domesticus (Linnaeus, 1758) (Passeriformes: Passeridae), from southern Brazil Ácaros nasais Rhinonyssidae parasitos de Passer domesticus (Linnaeus, 1758) (Passeriformes: Passeridae) no extremo sul do Brasil Luciana Siqueira Silveira dos Santos1*; Carolina Silveira Mascarenhas2; Paulo Roberto Silveira dos Santos3; Nara Amélia da Rosa Farias1 1 Laboratório de Parasitologia, Departamento de Microbiologia e Parasitologia, Instituto de Biologia, Universidade Federal de Pelotas – UFPel, Capão do Leão, RS, Brasil 2 Laboratório de Parasitologia de Animais Silvestres, Departamento de Microbiologia e Parasitologia, Instituto de Biologia, Universidade Federal de Pelotas – UFPel, Capão do Leão, RS, Brasil 3 Centro Nacional de Pesquisa para a Conservação das Aves Silvestres – CEMAVE, Instituto Chico Mendes de Conservação da Biodiversidade – ICMBio, Pelotas, RS, Brasil Received March 29, 2018 Accepted August 7, 2018 Abstract We report the occurrence and infection parameters of two species of nasal mites in Passer domesticus (Linnaeus, 1758) (house sparrow). Nasal passages, trachea, lungs, and air sacs of 100 house sparrows captured in an urban area at the city of Pelotas, State of Rio Grande do Sul, southern Brazil, were examined with a stereomicroscope. The mite, Sternostoma tracheacolum Lawrence, 1948 was present in the trachea and/or lungs (or both) of 13 birds (13%) at a mean intensity of 6.7 mites/infected host. Ptilonyssus hirsti (Castro & Pereira, 1947) was found in the nasal cavity of 1 sparrow (1%); coinfection was not observed in this bird.
    [Show full text]
  • COOPERATIVE NATIONAL PARK RESOURCES STUDIES UNIT UNIVERSITY of HAWAII at MANOA Department of Botany Honolulu, Hawaii 96822 (808) 948-8218 Clifford W
    COOPERATIVE NATIONAL PARK RESOURCES STUDIES UNIT UNIVERSITY OF HAWAII AT MANOA Department of Botany Honolulu, Hawaii 96822 (808) 948-8218 Clifford W. Smith, Unit Director Associate Professor of Botany Technical Report 29 MITES (CHELICERATA: ACARI) PARASITIC ON BIRDS IN HAWAII VOLCANOES NATIONAL PARK Technical Report 30 DISTRIBUTION OF MOSQUITOES (DIPTERA: CULICIDAE) ON THE EAST FLANK OF MAUNA LOA VOLCANO, HAWAI'I M. Lee Goff February 1980 UNIVERSITY OF HAWAII AT MANOA NATIONAL PARK SERVICE Contract No. CX 8000 7 0009 Contribution Nos. CPSU/UH 022/7 and CPSU/UH 022/8 MITES (CHELICERATA: ACARI) PARASITIC ON BIRDS IN HAWAII VOLCANOES NATIONAL PARK M. Lee Goff Department of Entomology B. P. Bishop Museum P. 0. Box 6037 Honolulu, Hawaii 96818 ABSTRACT The external parasites of native and exotic birds captured in Hawaii Volcanoes National Park are recorded. Forty-nine species of mites in 13 families were recovered from 10 species of birds. First records of Harpyrhynchidae are given for 'Amakihi and 'Apapane; Cytodites sp. (Cytoditidae) is recorded from the Red-b'illed Leiothrix for the first time in Hawaili. Two undescribed species of Cheyletiellidae, 1 undescribed species of Pyroglyphidae, and 19 undescribed feather mites of the super- family Analgoidea are noted. RECOMMENDATIONS Information presented in this report is primarily of a pre- liminary nature due to the incomplete state of the taxonomy of mites. This data will add to the basic knowledge of the stress placed on the bird populations within the Park. The presence of Ornithonyssus sylviarum in collections made of the House Finch provides a potential vector for viral and other diseases of birds, including various encephalides and Newcastles Disease.
    [Show full text]
  • Genome-Resolved Metagenomic Analyses Reveal the Presence of a Putative Bacterial Endosymbiont in an Avian Nasal Mite (Rhinonyssidae; Mesostigmata)
    microorganisms Article Genome-Resolved Metagenomic Analyses Reveal the Presence of a Putative Bacterial Endosymbiont in an Avian Nasal Mite (Rhinonyssidae; Mesostigmata) Carolina Osuna-Mascaró 1,*, Jorge Doña 2,3, Kevin P. Johnson 2 and Manuel de Rojas 4,* 1 Department of Biology, University of Nevada, 1664 N Virginia St., Reno, NV 89557, USA 2 Illinois Natural History Survey, Prairie Research Institute, University of Illinois at Urbana-Champaign, Champaign, IL 61820, USA; [email protected] (J.D.); [email protected] (K.P.J.) 3 Departamento de Biología Animal, Universitario de Cartuja, Calle Prof. Vicente Callao, 3, 18011 Granada, Spain 4 Department of Microbiology and Parasitology, Faculty of Pharmacy, Universidad de Sevilla, Calle San Fernando, 4, 41004 Sevilla, Spain * Correspondence: [email protected] (C.O.-M.); [email protected] (M.d.R.) Abstract: Rhinonyssidae (Mesostigmata) is a family of nasal mites only found in birds. All species are hematophagous endoparasites, which may damage the nasal cavities of birds, and also could be potential reservoirs or vectors of other infections. However, the role of members of Rhinonyssidae as disease vectors in wild bird populations remains uninvestigated, with studies of the microbiomes of Rhinonyssidae being almost non-existent. In the nasal mite (Tinaminyssus melloi) from rock doves (Columba livia), a previous study found evidence of a highly abundant putatively endosymbiotic bacteria from Class Alphaproteobacteria. Here, we expanded the sample size of this species (two Citation: Osuna-Mascaró, C.; Doña, different hosts- ten nasal mites from two independent samples per host), incorporated contamination J.; Johnson, K.P.; de Rojas, M. Genome-Resolved Metagenomic controls, and increased sequencing depth in shotgun sequencing and genome-resolved metagenomic Analyses Reveal the Presence of a analyses.
    [Show full text]
  • Endoparasitic Mites (Rhinonyssidae) on Urban Pigeons and Doves: Updating Morphological and Epidemiological Information
    diversity Article Endoparasitic Mites (Rhinonyssidae) on Urban Pigeons and Doves: Updating Morphological and Epidemiological Information Jesús Veiga 1 , Ivan Dimov 2 and Manuel de Rojas 3,* 1 Department of Functional and Evolutionary Ecology, Experimental Station of Arid Zones (EEZA-CSIC), 04120 Almería, Spain; [email protected] 2 Departament of Human Anatomy, State Pediatric Medical University, Litovskaya st. 2, 194100 St. Petersburg, Russia; [email protected] 3 Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, Profesor García González 2, 41012 Sevilla, Spain * Correspondence: [email protected]; Tel.: +34-954-556-450 Abstract: Rhynonyssidae is a family of endoparasitic hematophagous mites, which are still largely unknown even though they could act as vector or reservoir of different pathogens like dermanyssids. Sampling requirements have prevented deeper analysis. Rhinonyssids have been explored in a few host specimens per species, leading to undetailed morphological descriptions and inaccurate epidemi- ology. We explore the relationships established between these parasites in two Columbiformes urban birds (domestic pigeon (Columba livia domestica) and Eurasian collared dove (Streptopelia decaocto)), assesing 250 individuals of each type in Seville (Spain). As expected, Mesonyssus melloi (Castro, 1948) and Mesonyssus columbae (Crossley, 1950) were found in domestic pigeons, and Mesonyssus streptopeliae (Fain, 1962) in Eurasian collared doves. However, M. columbae was found for the first time in Eurasian collared doves. This relationship could be common in nature, but sampling methodology or host switching could also account for this result. An additional unknown specimen was found in a Eurasian collared dove, which could be a new species or an aberrant individual. We also provide an Citation: Veiga, J.; Dimov, I.; de Rojas, epidemiological survey of the three mite species, with M.
    [Show full text]
  • Acari: Mesostigmata) Associated with Small Mammals and Birds in Liberia, West Africa 435-441 ©Zoologisches Museum Hamburg, Entomol
    ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Entomologische Mitteilungen aus dem Zoologischen Museum Hamburg Jahr/Year: 1981 Band/Volume: 7 Autor(en)/Author(s): Rack Gisela, Okereke Titus Asiegbu Artikel/Article: Notes on gamasid mites (Acari: Mesostigmata) associated with small mammals and birds in Liberia, West Africa 435-441 ©Zoologisches Museum Hamburg, www.zobodat.at Entomol. Mitt. zool. Mus. Hamburg Bd. 7 (1983) Nr. 119 Notes on gamasid mites (Acari: Mesostigmata) associated with small mammals and birds in Liberia, West Africa TITUS ASIEGBU OKEREKE and GISELA RACK Abstract Gamasid mites associated with small mammals and birds from different localities in Liberia were examined. The collection was found to consist mainly of three genera: Laelaps, Androlaelaps and Ptilonyssus. This fauna is discussed against the backround of similar studies in Nigeria. Introduction The fauna of mesostigmatic mites parasitic on wild verte­ brates and birds in the Ethiopian zoogeographical region is relatively poorly studied. Present knowledge of this fauna is based mainly on studies in Southern Africa, Angola, Zaire Sudan and Egypt. The fauna of the West Africa subregion has remained comparatively less well known, although some contri bution to studies in this subregion has been made from Ni­ geria between 1968 and 1979 (OKEREKE 1968, 1970, 1971, 1973, 1979) Ghana (PAPERNA et al. 1970) and Liberia (FAIN et al. 1 974) . The present report based on a collection from Liberia is, therefore, of particular interest. The mites were collected by Dr. J. VOELKER between 1968 and 1971 during his studies of the helminths of Liberian mammals and birds at the depart ment of the Tropical Institute of Hamburg in Bongtown near Monrovia.
    [Show full text]
  • Designing Ultraconserved Elements for Acari Phylogeny
    Received: 16 May 2018 | Revised: 26 October 2018 | Accepted: 30 October 2018 DOI: 10.1111/1755-0998.12962 RESOURCE ARTICLE Advancing mite phylogenomics: Designing ultraconserved elements for Acari phylogeny Matthew H. Van Dam1 | Michelle Trautwein1 | Greg S. Spicer2 | Lauren Esposito1 1Entomology Department, Institute for Biodiversity Science and Sustainability, Abstract California Academy of Sciences, San Mites (Acari) are one of the most diverse groups of life on Earth; yet, their evolu- Francisco, California tionary relationships are poorly understood. Also, the resolution of broader arachnid 2Department of Biology, San Francisco State University, San Francisco, California phylogeny has been hindered by an underrepresentation of mite diversity in phy- logenomic analyses. To further our understanding of Acari evolution, we design tar- Correspondence Matthew H. Van Dam, Entomology geted ultraconserved genomic elements (UCEs) probes, intended for resolving the Department, Institute for Biodiversity complex relationships between mite lineages and closely related arachnids. We then Science and Sustainability, California Academy of Sciences, San Francisco, test our Acari UCE baits in‐silico by constructing a phylogeny using 13 existing Acari California. genomes, as well as 6 additional taxa from a variety of genomic sources. Our Acari‐ Email: [email protected] specific probe kit improves the recovery of loci within mites over an existing general Funding information arachnid UCE probe set. Our initial phylogeny recovers the major mite lineages, yet Schlinger Foundation; Doolin Foundation for Biodiversity finds mites to be non‐monophyletic overall, with Opiliones (harvestmen) and Ricin- uleidae (hooded tickspiders) rendering Parasitiformes paraphyletic. KEYWORDS Acari, Arachnida, mites, Opiliones, Parasitiformes, partitioning, phylogenomics, Ricinuleidae, ultraconserved elements 1 | INTRODUCTION Babbitt, 2002; Regier et al., 2010; Sharma et al., 2014; Shultz, 2007; Starrett et al., 2017; Wheeler & Hayashi, 1998).
    [Show full text]
  • A Catalog of Acari of the Hawaiian Islands
    The Library of Congress has catalogued this serial publication as follows: Research extension series / Hawaii Institute of Tropical Agri­ culture and Human Resources.-OOl--[Honolulu, Hawaii]: The Institute, [1980- v. : ill. ; 22 cm. Irregular. Title from cover. Separately catalogued and classified in LC before and including no. 044. ISSN 0271-9916 = Research extension series - Hawaii Institute of Tropical Agriculture and Human Resources. 1. Agriculture-Hawaii-Collected works. 2. Agricul­ ture-Research-Hawaii-Collected works. I. Hawaii Institute of Tropical Agriculture and Human Resources. II. Title: Research extension series - Hawaii Institute of Tropical Agriculture and Human Resources S52.5.R47 630'.5-dcI9 85-645281 AACR 2 MARC-S Library of Congress [8506] ACKNOWLEDGMENTS Any work of this type is not the product of a single author, but rather the compilation of the efforts of many individuals over an extended period of time. Particular assistance has been given by a number of individuals in the form of identifications of specimens, loans of type or determined material, or advice. I wish to thank Drs. W. T. Atyeo, E. W. Baker, A. Fain, U. Gerson, G. W. Krantz, D. C. Lee, E. E. Lindquist, B. M. O'Con­ nor, H. L. Sengbusch, J. M. Tenorio, and N. Wilson for their assistance in various forms during the com­ pletion of this work. THE AUTHOR M. Lee Goff is an assistant entomologist, Department of Entomology, College of Tropical Agriculture and Human Resources, University of Hawaii. Cover illustration is reprinted from Ectoparasites of Hawaiian Rodents (Siphonaptera, Anoplura and Acari) by 1. M. Tenorio and M. L.
    [Show full text]
  • Persistence of Passerine Ectoparasites on the Diederik Cuckoo Chrysococcyx Caprius
    J. Zool., Lond. (1998) 244, 145±153 # 1998 The Zoological Society of London Printed in the United Kingdom Persistence of passerine ectoparasites on the diederik cuckoo Chrysococcyx caprius Anna K. Lindholm1*, Gert J. Venter2 and Edward A. Ueckermann3 1 Department of Zoology, Downing Street, Cambridge CB2 3EJ, U.K. and Department of Zoology & Entomology, University of Natal, Private Bag X01, Scottsville 3209, South Africa 2 Onderstepoort Veterinary Institute, Private Bag X5, Onderstepoort 0110, South Africa 3 Plant Protection Research Institute, Private Bag X134, Pretoria 0001, South Africa (Accepted 3 June 1997) Abstract Using the African diederik cuckoo Chrysococcyx caprius and four sympatric passerine foster species in the subfamily Ploceinae, we show that nestling cuckoos are infested by feather lice and mites derived from the ectoparasite fauna typical of the foster species. Adult cuckoos had ®ve species of lice and mites normally found on ploceines, which demonstrates that these ectoparasites are able to survive on foreign hosts. This is the ®rst record of persistence of passerine ectoparasites on a cuckoo. Adult diederik cuckoos also harboured four species of mites and lice speci®c to cuckoos; since these were not detected on nestlings, cuckoo-speci®c lice and mites apparently transfer to cuckoos after they leave the nest. Contrary to prediction, ectoparasites with a life cycle involving a permanent association with their host (feather mites and lice) were more likely to transfer to cuckoo nestlings than ectoparasites which spend part of their life cycle away from their host (haematophagous mites and phoretic skin mites). New host records are established for the lice genera Brueelia, Cuculoecus, Machaerilaemus, Myrsidea, Philopterus as well as for the mite species Microlichus americanus, Ornithonyssus bursa, Ornithocheyla megaphallos, Pellonyssus reedi, Pteronyssoides passeris, Pternonyssus glossifer, Trouessartia baupi, T.
    [Show full text]
  • Abhandlungen Und Berichte
    ISSN 1618-8977 Mesostigmata Band 7 (1) 2007 Staatliches Museum für Naturkunde Görlitz ACARI Bibliographia Acarologica Herausgeber: Dr. Axel Christian im Auftrag des Staatlichen Museums für Naturkunde Görlitz Anfragen erbeten an: ACARI Dr. Axel Christian Staatliches Museum für Naturkunde Görlitz PF 300 154, 02806 Görlitz „ACARI“ ist zu beziehen über: Staatliches Museum für Naturkunde Görlitz – Bibliothek PF 300 154, 02806 Görlitz Eigenverlag Staatliches Museum für Naturkunde Görlitz Alle Rechte vorbehalten Titelgrafik: E. Mättig Druck: MAXROI Graphics GmbH, Görlitz Editor-in-chief: Dr Axel Christian authorised by the Staatliches Museum für Naturkunde Görlitz Enquiries should be directed to: ACARI Dr Axel Christian Staatliches Museum für Naturkunde Görlitz PF 300 154, 02806 Görlitz, Germany ‘ACARI’ may be orderd through: Staatliches Museum für Naturkunde Görlitz – Bibliothek PF 300 154, 02806 Görlitz, Germany Published by the Staatliches Museum für Naturkunde Görlitz All rights reserved Cover design by: E. Mättig Printed by MAXROI Graphics GmbH, Görlitz, Germany ACARI Bibliographia Acarologica 7 (1): 1-27, 2007 ISSN 1618-8977 Mesostigmata Nr. 18 Axel Christian und Kerstin Franke Staatliches Museum für Naturkunde Görlitz Jährlich werden in der Bibliographie die neuesten Publikationen über mesostigmate Milben veröffentlicht, soweit sie uns bekannt sind. Das aktuelle Heft enthält 316 Titel von Wissen- schaftlern aus 42 Ländern. In den Arbeiten werden 92 neue Arten und Gattungen beschrie- ben. Sehr viele Artikel beschäftigen sich mit ökologischen Problemen (30%), mit der Taxo- nomie (20%), mit der Faunistik (10%) und der Bienen-Milbe Varroa (10%). Bitte helfen Sie bei der weiteren Vervollständigung der Literaturdatenbank durch unaufge- forderte Zusendung von Sonderdrucken bzw. Kopien. Wenn dies nicht möglich ist, bitten wir um Mitteilung der vollständigen Literaturzitate zur Aufnahme in die Datei.
    [Show full text]
  • NEAT (North East Atlantic Taxa): South Scandinavian Marine & P
    1 NEAT (North East Atlantic Taxa): B. duffeyi (Millidge,1954) South Scandinavian marine & maritime Chelicerata & Uniramia = Praestigia duffeyi Millidge,1954 South Scandinavian marine & maritime Chelicerata & Uniramia SE England, Belgium Check-List B. maritimum (Crocker & Parker,1970) compiled at TMBL (Tjärnö Marine Biological Laboratory) by: Belgium Hans G. Hansson 1990-04-11 / small revisions until Nov. 1994, when it for the first time was published on Internet. Republished as a pdf file February 1996 and again August 1998. Satilatlas Keyserling,1886 =? Perimones Jackson,1932 Citation suggested: Hansson, H.G. (Comp.), 1998. NEAT (North East Atlantic Taxa): South Scandinavian marine & P. britteni (Jackson,1913) maritime Chelicerata & Uniramia. Check-List. Internet pdf Ed., Aug. 1998. [http://www.tmbl.gu.se]. Britain, Belgium Denotations: (™) = Genotype @ = Associated to * = General note Trichoncus Simon,1884 N.B.: This is one of several preliminary check-lists, covering S. Scandinavian marine animal (and partly marine T. hackmanni Millidge,1955 protoctist) taxa. Some financial support from (or via) NKMB (Nordiskt Kollegium för Marin Biologi), during the last S England years of the existence of this organisation (until 1993), is thankfully acknowledged. The primary purpose of these checklists is to facilitate for everyone, trying to identify organisms from the area, to know which species that earlier Lycosoidea Sundevall,1833 "Jaktspindlar" have been encountered there, or in neighbouring areas. A secondary purpose is to facilitate for non-experts to find as correct names as possible for organisms, including names of authors and years of description. So far these checklists Lycosidae Sundevall,1833 "Vargspindlar" are very preliminary. Due to restricted access to literature there are (some known, and probably many unknown) omissions in the lists.
    [Show full text]