Concurrency and Race Conditions
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												Is Parallel Programming Hard, And, If So, What Can You Do About It?
Is Parallel Programming Hard, And, If So, What Can You Do About It? Edited by: Paul E. McKenney Linux Technology Center IBM Beaverton [email protected] December 16, 2011 ii Legal Statement This work represents the views of the authors and does not necessarily represent the view of their employers. IBM, zSeries, and Power PC are trademarks or registered trademarks of International Business Machines Corporation in the United States, other countries, or both. Linux is a registered trademark of Linus Torvalds. i386 is a trademarks of Intel Corporation or its subsidiaries in the United States, other countries, or both. Other company, product, and service names may be trademarks or service marks of such companies. The non-source-code text and images in this doc- ument are provided under the terms of the Creative Commons Attribution-Share Alike 3.0 United States li- cense (http://creativecommons.org/licenses/ by-sa/3.0/us/). In brief, you may use the contents of this document for any purpose, personal, commercial, or otherwise, so long as attribution to the authors is maintained. Likewise, the document may be modified, and derivative works and translations made available, so long as such modifications and derivations are offered to the public on equal terms as the non-source-code text and images in the original document. Source code is covered by various versions of the GPL (http://www.gnu.org/licenses/gpl-2.0.html). Some of this code is GPLv2-only, as it derives from the Linux kernel, while other code is GPLv2-or-later. - 
												
												Introduction to Multi-Threading and Vectorization Matti Kortelainen Larsoft Workshop 2019 25 June 2019 Outline
Introduction to multi-threading and vectorization Matti Kortelainen LArSoft Workshop 2019 25 June 2019 Outline Broad introductory overview: • Why multithread? • What is a thread? • Some threading models – std::thread – OpenMP (fork-join) – Intel Threading Building Blocks (TBB) (tasks) • Race condition, critical region, mutual exclusion, deadlock • Vectorization (SIMD) 2 6/25/19 Matti Kortelainen | Introduction to multi-threading and vectorization Motivations for multithreading Image courtesy of K. Rupp 3 6/25/19 Matti Kortelainen | Introduction to multi-threading and vectorization Motivations for multithreading • One process on a node: speedups from parallelizing parts of the programs – Any problem can get speedup if the threads can cooperate on • same core (sharing L1 cache) • L2 cache (may be shared among small number of cores) • Fully loaded node: save memory and other resources – Threads can share objects -> N threads can use significantly less memory than N processes • If smallest chunk of data is so big that only one fits in memory at a time, is there any other option? 4 6/25/19 Matti Kortelainen | Introduction to multi-threading and vectorization What is a (software) thread? (in POSIX/Linux) • “Smallest sequence of programmed instructions that can be managed independently by a scheduler” [Wikipedia] • A thread has its own – Program counter – Registers – Stack – Thread-local memory (better to avoid in general) • Threads of a process share everything else, e.g. – Program code, constants – Heap memory – Network connections – File handles - 
												
												CSC 553 Operating Systems Multiple Processes
CSC 553 Operating Systems Lecture 4 - Concurrency: Mutual Exclusion and Synchronization Multiple Processes • Operating System design is concerned with the management of processes and threads: • Multiprogramming • Multiprocessing • Distributed Processing Concurrency Arises in Three Different Contexts: • Multiple Applications – invented to allow processing time to be shared among active applications • Structured Applications – extension of modular design and structured programming • Operating System Structure – OS themselves implemented as a set of processes or threads Key Terms Related to Concurrency Principles of Concurrency • Interleaving and overlapping • can be viewed as examples of concurrent processing • both present the same problems • Uniprocessor – the relative speed of execution of processes cannot be predicted • depends on activities of other processes • the way the OS handles interrupts • scheduling policies of the OS Difficulties of Concurrency • Sharing of global resources • Difficult for the OS to manage the allocation of resources optimally • Difficult to locate programming errors as results are not deterministic and reproducible Race Condition • Occurs when multiple processes or threads read and write data items • The final result depends on the order of execution – the “loser” of the race is the process that updates last and will determine the final value of the variable Operating System Concerns • Design and management issues raised by the existence of concurrency: • The OS must: – be able to keep track of various processes - 
												
												Towards Gradually Typed Capabilities in the Pi-Calculus
Towards Gradually Typed Capabilities in the Pi-Calculus Matteo Cimini University of Massachusetts Lowell Lowell, MA, USA matteo [email protected] Gradual typing is an approach to integrating static and dynamic typing within the same language, and puts the programmer in control of which regions of code are type checked at compile-time and which are type checked at run-time. In this paper, we focus on the π-calculus equipped with types for the modeling of input-output capabilities of channels. We present our preliminary work towards a gradually typed version of this calculus. We present a type system, a cast insertion procedure that automatically inserts run-time checks, and an operational semantics of a π-calculus that handles casts on channels. Although we do not claim any theoretical results on our formulations, we demonstrate our calculus with an example and discuss our future plans. 1 Introduction This paper presents preliminary work on integrating dynamically typed features into a typed π-calculus. Pierce and Sangiorgi have defined a typed π-calculus in which channels can be assigned types that express input and output capabilities [16]. Channels can be declared to be input-only, output-only, or that can be used for both input and output operations. As a consequence, this type system can detect unintended or malicious channel misuses at compile-time. The static typing nature of the type system prevents the modeling of scenarios in which the input- output discipline of a channel is discovered at run-time. In these scenarios, such a discipline must be enforced with run-time type checks in the style of dynamic typing. - 
												
												Enhanced Debugging for Data Races in Parallel
ENHANCED DEBUGGING FOR DATA RACES IN PARALLEL PROGRAMS USING OPENMP A Thesis Presented to the Faculty of the Department of Computer Science University of Houston In Partial Fulfillment of the Requirements for the Degree Master of Science By Marcus W. Hervey December 2016 ENHANCED DEBUGGING FOR DATA RACES IN PARALLEL PROGRAMS USING OPENMP Marcus W. Hervey APPROVED: Dr. Edgar Gabriel, Chairman Dept. of Computer Science Dr. Shishir Shah Dept. of Computer Science Dr. Barbara Chapman Dept. of Computer Science, Stony Brook University Dean, College of Natural Sciences and Mathematics ii iii Acknowledgements A special thank you to Dr. Barbara Chapman, Ph.D., Dr. Edgar Gabriel, Ph.D., Dr. Shishir Shah, Ph.D., Dr. Lei Huang, Ph.D., Dr. Chunhua Liao, Ph.D., Dr. Laksano Adhianto, Ph.D., and Dr. Oscar Hernandez, Ph.D. for their guidance and support throughout this endeavor. I would also like to thank Van Bui, Deepak Eachempati, James LaGrone, and Cody Addison for their friendship and teamwork, without which this endeavor would have never been accomplished. I dedicate this thesis to my parents (Billy and Olivia Hervey) who have always chal- lenged me to be my best, and to my wife and kids for their love and sacrifice throughout this process. ”Our greatest weakness lies in giving up. The most certain way to succeed is always to try just one more time.” – Thomas Alva Edison iv ENHANCED DEBUGGING FOR DATA RACES IN PARALLEL PROGRAMS USING OPENMP An Abstract of a Thesis Presented to the Faculty of the Department of Computer Science University of Houston In Partial Fulfillment of the Requirements for the Degree Master of Science By Marcus W. - 
												
												Reconciling Real and Stochastic Time: the Need for Probabilistic Refinement
DOI 10.1007/s00165-012-0230-y The Author(s) © 2012. This article is published with open access at Springerlink.com Formal Aspects Formal Aspects of Computing (2012) 24: 497–518 of Computing Reconciling real and stochastic time: the need for probabilistic refinement J. Markovski1,P.R.D’Argenio2,J.C.M.Baeten1,3 and E. P. de Vink1,3 1 Eindhoven University of Technology, Eindhoven, The Netherlands. E-mail: [email protected] 2 FaMAF, Universidad Nacional de Cordoba,´ Cordoba,´ Argentina 3 Centrum Wiskunde & Informatica, Amsterdam, The Netherlands Abstract. We conservatively extend an ACP-style discrete-time process theory with discrete stochastic delays. The semantics of the timed delays relies on time additivity and time determinism, which are properties that enable us to merge subsequent timed delays and to impose their synchronous expiration. Stochastic delays, however, interact with respect to a so-called race condition that determines the set of delays that expire first, which is guided by an (implicit) probabilistic choice. The race condition precludes the property of time additivity as the merger of stochastic delays alters this probabilistic behavior. To this end, we resolve the race condition using conditionally-distributed unit delays. We give a sound and ground-complete axiomatization of the process the- ory comprising the standard set of ACP-style operators. In this generalized setting, the alternative composition is no longer associative, so we have to resort to special normal forms that explicitly resolve the underlying race condition. Our treatment succeeds in the initial challenge to conservatively extend standard time with stochastic time. However, the ‘dissection’ of the stochastic delays to conditionally-distributed unit delays comes at a price, as we can no longer relate the resolved race condition to the original stochastic delays. - 
												
												11. Kernel Design 11
11. Kernel Design 11. Kernel Design Interrupts and Exceptions Low-Level Synchronization Low-Level Input/Output Devices and Driver Model File Systems and Persistent Storage Memory Management Process Management and Scheduling Operating System Trends Alternative Operating System Designs 269 / 352 11. Kernel Design Bottom-Up Exploration of Kernel Internals Hardware Support and Interface Asynchronous events, switching to kernel mode I/O, synchronization, low-level driver model Operating System Abstractions File systems, memory management Processes and threads Specific Features and Design Choices Linux 2.6 kernel Other UNIXes (Solaris, MacOS), Windows XP and real-time systems 270 / 352 11. Kernel Design – Interrupts and Exceptions 11. Kernel Design Interrupts and Exceptions Low-Level Synchronization Low-Level Input/Output Devices and Driver Model File Systems and Persistent Storage Memory Management Process Management and Scheduling Operating System Trends Alternative Operating System Designs 271 / 352 11. Kernel Design – Interrupts and Exceptions Hardware Support: Interrupts Typical case: electrical signal asserted by external device I Filtered or issued by the chipset I Lowest level hardware synchronization mechanism Multiple priority levels: Interrupt ReQuests (IRQ) I Non-Maskable Interrupts (NMI) Processor switches to kernel mode and calls specific interrupt service routine (or interrupt handler) Multiple drivers may share a single IRQ line IRQ handler must identify the source of the interrupt to call the proper → service routine 272 / 352 11. Kernel Design – Interrupts and Exceptions Hardware Support: Exceptions Typical case: unexpected program behavior I Filtered or issued by the chipset I Lowest level of OS/application interaction Processor switches to kernel mode and calls specific exception service routine (or exception handler) Mechanism to implement system calls 273 / 352 11. - 
												
												Understanding the Linux Kernel, 3Rd Edition by Daniel P
1 Understanding the Linux Kernel, 3rd Edition By Daniel P. Bovet, Marco Cesati ............................................... Publisher: O'Reilly Pub Date: November 2005 ISBN: 0-596-00565-2 Pages: 942 Table of Contents | Index In order to thoroughly understand what makes Linux tick and why it works so well on a wide variety of systems, you need to delve deep into the heart of the kernel. The kernel handles all interactions between the CPU and the external world, and determines which programs will share processor time, in what order. It manages limited memory so well that hundreds of processes can share the system efficiently, and expertly organizes data transfers so that the CPU isn't kept waiting any longer than necessary for the relatively slow disks. The third edition of Understanding the Linux Kernel takes you on a guided tour of the most significant data structures, algorithms, and programming tricks used in the kernel. Probing beyond superficial features, the authors offer valuable insights to people who want to know how things really work inside their machine. Important Intel-specific features are discussed. Relevant segments of code are dissected line by line. But the book covers more than just the functioning of the code; it explains the theoretical underpinnings of why Linux does things the way it does. This edition of the book covers Version 2.6, which has seen significant changes to nearly every kernel subsystem, particularly in the areas of memory management and block devices. The book focuses on the following topics: • Memory management, including file buffering, process swapping, and Direct memory Access (DMA) • The Virtual Filesystem layer and the Second and Third Extended Filesystems • Process creation and scheduling • Signals, interrupts, and the essential interfaces to device drivers • Timing • Synchronization within the kernel • Interprocess Communication (IPC) • Program execution Understanding the Linux Kernel will acquaint you with all the inner workings of Linux, but it's more than just an academic exercise. - 
												
												Lecture 18 18.1 Distributed and Concurrent Systems 18.2 Race
CMPSCI 691ST Systems Fall 2011 Lecture 18 Lecturer: Emery Berger Scribe: Sean Barker 18.1 Distributed and Concurrent Systems In this lecture we discussed two broad issues in concurrent systems: clocks and race detection. The first paper we read introduced the Lamport clock, which is a scalar providing a logical clock value for each process. Every time a process sends a message, it increments its clock value, and every time a process receives a message, it sets its clock value to the max of the current value and the message value. Clock values are used to provide a `happens-before' relationship, which provides a consistent partial ordering of events across processes. Lamport clocks were later extended to vector clocks, in which each of n processes maintains an array (or vector) of n clock values (one for each process) rather than just a single value as in Lamport clocks. Vector clocks are much more precise than Lamport clocks, since they can check whether intermediate events from anyone have occurred (by looking at the max across the entire vector), and have essentially replaced Lamport clocks today. Moreover, since distributed systems are already sending many messages, the cost of maintaining vector clocks is generally not a big deal. Clock synchronization is still a hard problem, however, because physical clock values will always have some amount of drift. The FastTrack paper we read leverages vector clocks to do race detection. 18.2 Race Detection Broadly speaking, a race condition occurs when at least two threads are accessing a variable, and one of them writes the value while another is reading. - 
												
												Breadth First Search Vectorization on the Intel Xeon Phi
Breadth First Search Vectorization on the Intel Xeon Phi Mireya Paredes Graham Riley Mikel Luján University of Manchester University of Manchester University of Manchester Oxford Road, M13 9PL Oxford Road, M13 9PL Oxford Road, M13 9PL Manchester, UK Manchester, UK Manchester, UK [email protected] [email protected] [email protected] ABSTRACT Today, scientific experiments in many domains, and large Breadth First Search (BFS) is a building block for graph organizations can generate huge amounts of data, e.g. social algorithms and has recently been used for large scale anal- networks, health-care records and bio-informatics applica- ysis of information in a variety of applications including so- tions [8]. Graphs seem to be a good match for important cial networks, graph databases and web searching. Due to and large dataset analysis as they can abstract real world its importance, a number of different parallel programming networks. To process large graphs, different techniques have models and architectures have been exploited to optimize been applied, including parallel programming. The main the BFS. However, due to the irregular memory access pat- challenge in the parallelization of graph processing is that terns and the unstructured nature of the large graphs, its large graphs are often unstructured and highly irregular and efficient parallelization is a challenge. The Xeon Phi is a this limits their scalability and performance when executing massively parallel architecture available as an off-the-shelf on off-the-shelf systems [18]. accelerator, which includes a powerful 512 bit vector unit The Breadth First Search (BFS) is a building block of with optimized scatter and gather functions. - 
												
												Rapid Prototyping of High-Performance Concurrent Java Applications
Rapid Prototyping of High-Performance Concurrent Java Applications K.J.R. Powell Master of Science School of Computer Science School of Informatics University of Edinburgh 2002 (Graduation date:December 2002) Abstract The design and implementation of concurrent applications is more challenging than that of sequential applications. The aim of this project is to address this challenge by producing an application which can generate skeleton Java systems from a high-level PEPA modelling language description. By automating the process of translating the design into a Java skeleton system, the result will maintain the performance and be- havioural characteristics of the model, providing a sound framework for completing the concurrent application. This method accelerates the process of initial implementation whilst ensuring the system characterisics remain true to the high-level model. i Acknowledgements Many thanks to my supervisor Stephen Gilmore for his excellent guidance and ideas. I’d also like to express my gratitude to L.L. for his assistance above and beyond the call of duty in the field of editing. ii Declaration I declare that this thesis was composed by myself, that the work contained herein is my own except where explicitly stated otherwise in the text, and that this work has not been submitted for any other degree or professional qualification except as specified. (K.J.R. Powell) iii Table of Contents 1 Introduction 1 1.1 Principal Goal . 1 1.2 PEPA and Java . 2 1.3 Project Objective . 2 2 Performance Evaluation Process Algebra 4 2.1 Overview of PEPA and its role in design . 4 2.2 The Syntax of PEPA . - 
												
												Towards Systematic Black-Box Testing for Exploitable Race Conditions in Web Apps
1 Faculty of Electrical Engineering, Mathematics & Computer Science Towards Systematic Black-Box Testing for Exploitable Race Conditions in Web Apps Rob J. van Emous [email protected] Master Thesis June 2019 Supervisors: prof. dr. M. Huisman dr. ing. E. Tews (Computest) M.Sc. D. Keuper Formal Methods and Tools Group Faculty of Electrical Engineering, Mathematics and Computer Science University of Twente P.O. Box 217 7500 AE Enschede The Netherlands ABSTRACT As web applications get more complicated and more integrated into our daily lives, securing them against known cyber attacks is of great importance. Performing se- curity tests is the primary way to discover the current risks and act accordingly. In order to perform these test in a systematic way, testers create and use numer- ous vulnerability lists and testing guidelines. Often, dedicated security institutions like Escal Institute of Advanced Technologies (SANS), MITRE, Certified Secure, and the Open Web Application Security Project (OWASP) create these guidelines. These lists are not meant to be exhaustive, but as the introduction in the Common Weakness Enumeration (CWE) of MITRE and SANS by Martin et al. (2011) puts it: they "(..) evaluated each weakness based on prevalence, importance, and the likelihood of exploit". This seems like a reasonable way of thinking, but as we have shown in this research, it can also lead to oversight of essential, but stealthy security issues. In this research, we will focus on one such stealthy issue in web apps called a race condition. Race conditions are known for a very long time as research by Abbott et al.