CHAPTER 6 Discovery of Functional Iridescence and Its Coevoiution With
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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Ostracoda an Introduction.Pdf
The Ostracoda (from Wikipedia, 5/5/2009: http://en.wikipedia.org/wiki/Ostracod) Ostracoda is a class of the Crustacea, sometimes known as the seed shrimp because of their appearance. Ostracods are small crustaceans, typically around one mm in size, but varying between 0.2 to 30 mm, laterally compressed and protected by a bivalve-like, chitinous or calcareous valve or "shell". The hinge of the two valves is in the upper, dorsal region of the body. Some 65,000 species (13,000 of which are extant taxa) have been identified, grouped into several orders. This group may not be monophyletic. Ostracod taxa are grouped into a Class based on gross morphology. Ecologically, marine ostracods can be part of the zooplankton or (most commonly) they are part of the benthos, living on or inside the upper layer of the sea floor. Many ostracods, especially the Podocopida, are also found in fresh water and some are known from humid continental forest soils. The body consists of a cephalon (head), separated from the thorax by a slight constriction. The segmentation is unclear. The abdomen is regressed or absent whereas the adult gonads are relatively large. There are 5–8 pairs of appendages. The branchial plates are responsible for oxygenation. The epidermal cells may also secrete calcium carbonate after the chitinous layer is formed, resulting in a chalk layer enveloped by chitin. This calcification is not equally pronounced in all orders. During every instar transition, the old carapace (chitinous and calcified) is rejected and a new, larger is formed and calcified. The outer lamella calcifies completely, while the inner lamella calcifies partially, with the rest remaining chitinous. -
The North American Ostracod Eusarsiella Zostericola (Cushman, 1906) Arrives in Mainland Europe
BioInvasions Records (2013) Volume 2, Issue 1: 47–50 Open Access doi: http://dx.doi.org/10.3391/bir.2013.2.1.08 © 2013 The Author(s). Journal compilation © 2013 REABIC Short Communication The North American ostracod Eusarsiella zostericola (Cushman, 1906) arrives in mainland Europe Marco Faasse1,2 1 eCOAST Marine Research, PO Box 149, 4330 AC Middelburg, The Netherlands 2 Naturalis Biodiversity Center, Department of Marine Zoology, PO Box 9517, 2300 RA Leiden, The Netherlands E-mail: [email protected] Received: 3 October 2012 / Accepted: 14 November 2012 / Published online: 16 November 2012 Handling editor: Vadim Panov Abstract In sediment samples collected in the Oosterschelde, a marine embayment in the southwest of The Netherlands (southern North Sea), nine specimens of a non-native myodocopid ostracod were found. The ostracods were identifed as the North American species Eusarsiella zostericola (Cushman, 1906), previously introduced to southeastern England, probably with imported American oysters. Key words: introduction; shellfish; Myodocopida; The Netherlands ostracods of the order Myodocopida from The Introduction Netherlands. They do not belong to any of the native species known from the North Sea area. At least three species introduced to southeast Their similarity to a species introduced to England with oysters from North America have England with oysters from North America was subsequently been recorded from The Nether- immediately evident and this was checked with lands. The American slipper limpet Crepidula the pertinent literature. fornicata (L., 1758) and the American piddock Petricolaria pholadiformis (Lamarck, 1818) Material and methods arrived in The Netherlands, possibly with shellfish imports from England (Wolff 2005), Samples were taken in the southwest delta area and the American oyster drill Urosalpinx cinerea of The Netherlands, on the eastern shore of the (Say, 1822) almost certainly did so (Faasse and Southern Bight of the North Sea. -
Evolutionary Biology and Ecology of Ostracoda
Evolutionary Biology and Ecology of Ostracoda ~1997 Developments in Hydrobiology 148 Series editor H. J. Dumont Fifteen papers presented under Theme 3 of the 13th International Symposium on Ostracoda (IS097), held at the University of Greenwich, Medway Campus, U.K., from 27 to 31 July, 1997. The conference organizers were David J. Horne and Ian Slipper (University of Greenwich), Alan Lord (University Col lege London), Ian Boomer (University of East Anglia1) and Jonathan Holmes (Kingston University). 1 Present address: University of Newcastle. Evolutionary Biology and Ecology of Ostracoda Theme 3 of the 13th International Symposium on Ostracoda (18097) Edited by David J. Horne & Koen Martens Reprinted from Hydrobio/ogia, volume 419 (2000) Springer-Science+Business Media, B.V. Library of Congress Cataloging-in-Publication Data A C.I.P. Catalogue record for this book is available from the Library of Congress. ISBN 978-90-481-5499-9 ISBN 978-94-017-1508-9 (eBook) DOI 10.1007/978-94-017-1508-9 Printed an acid-free paper AII Rights reserved © 2000 Springer Science+Business Media Dordrecht Originally published by Kluwer Academic Publishers in 2000 Softcover reprint of the hardcover 1st edition 2000 No part of the material protected by this copyright notice may be reproduced or utilized in any form or by any means, electronic or mechanical, including photocopying, record ing or by any information storage and retrieval system, without written permission from the copyright owner. v Contents Preface Ostracoda and the four pillars of evolutionary wisdom K. Martens, D. J. Home Vll-Xl Keynote Paper Open qm~stions in evolutionary ecology: do ostracods have the answers? R.K. -
Syncarid Crustaceans from the Montceau Lagersta¨Tte
[Palaeontology, Vol. 49, Part 3, 2006, pp. 647–672] SYNCARID CRUSTACEANS FROM THE MONTCEAU LAGERSTA¨ TTE (UPPER CARBONIFEROUS; FRANCE) by VINCENT PERRIER*, JEAN VANNIER*, PATRICK R. RACHEBOEUF , SYLVAIN CHARBONNIER*, DOMINIQUE CHABARDà and DANIEL SOTTYà *Universite´ Claude Bernard Lyon 1, UMR 5125 PEPS ‘Pale´oenvironnements et Pale´obiosphe`re’, Campus scientifique de la Doua, Baˆtiment Ge´ode, 2 rue Raphae¨l Dubois, 69622 Villeurbanne, France; e-mails: [email protected]; [email protected] Universite´ de Bretagne Occidentale, UMR 6538 ‘Domaines Oce´aniques’ – Pale´ontologie, UFR Sciences et Techniques, 6 avenue Le Gorgeu, CS 93837, F-29238 Brest cedex 3, France; e-mail: [email protected] àMuse´e d’Histoire Naturelle d’Autun, 14 rue St-Antoine, 71400 Autun, France Typescript received 28 September 2004; accepted in revised form 17 May 2005 Abstract: Key aspects of the morphology, autecology, sys- suggest a relatively low level of locomotory activity. The tematics and taphonomy of the crustacean syncarids from field of vision may have been large and panoramic (stalked the Montceau Lagersta¨tte (Upper Carboniferous, Stephanian eyes). Rows of pores on 12 trunk segments are interpreted B; France) are presented. Palaeocaris secretanae is the most as possible sensory organs used for current detection. abundant faunal element of the Montceau biota and shows Females were brooding eggs (clusters of eggs preserved striking morphological similarities with Palaeocaris typus along anteroventral trunk). Microprobe analysis indicates from the Mazon Creek Lagersta¨tte (Westphalian D; Illinois, that siderite is the major component of the nodules. Four USA). Palaeocaris secretanae was a shrimp-like animal with events played a key-role in the three-dimensional preserva- a short head (no head shield), large mandibles, 14 trunk tion of syncarids: (1) rapid burial, (2) minimal decomposi- segments (the first one being reduced) and a fan-like caudal tion, (3) phosphatic mineralization shortly after the termination. -
Vertical Distribution and Population Structure of the Three Dominant Planktonic Ostracods (Discoconchoecia Pseudodiscophora
Plankton Biol. Ecol. 49 (2): 66-74, 2002 plankton biology & ecology K> The Plankton Society of Japan 2002 Vertical distribution and population structure of the three dominant planktonic ostracods (Discoconchoecia pseudodiscophora, Orthoconchoecia haddoni and Metaconchoecia skogsbergi) in the Oyashio region, western North Pacific Hideki Kaeriyama & Tsutomu Ikeda Marine Biodiversity Laboratory, Graduate School of Fisheries Sciences, Hokkaido University, 3-1-1, Minato-cho, Hakodate, Hokkaido 041-0821, Japan Received 19 November 2001; accepted 4 April 2002 Abstract: Diel and seasonal vertical distribution and population structure of Discoconchoecia pseu- dodiscophora (Rudjakov), Orthoconchoecia haddoni (Brady & Norman) and Metaconchoecia skogs bergi (lies) were investigated in the Oyashio region during September 1996 through October 1997. Monthly samples were collected with 0.1 mm mesh closing nets hauled vertically through five con tiguous discrete depths between the surface and ~2000 m. D. pseudodiscophora occurred predomi nantly from the base of the thermocline to a depth of 500 m. O. haddoni and M. skogsbergi occurred somewhat deeper at depths of 250 to 1000 m, but were also moderately abundant below 1000 m. Sampling was undertaken both by day and by night during December 1996, April and October 1997 to assess diel vertical migration activity, but revealed no appreciable day/night differences in the ver tical distributions of the ostracods. All the instars sampled [instars II through VIII (adults) of D. pseu dodiscophora and O. haddoni, and instars III through VIII (adults) of M. skogsbergi] were collected throughout the entire period of the study. All three species showed evidence of ontogenetic vertical migration—the ranges of these migrations being from 300-1000 m in D. -
From an Anchialine Lava Tube in Lanzarote, Canary Islands
Ostracoda (Halocypridina, Cladocopina) from an Anchialine Lava Tube in Lanzarote, Canary Islands LOUIS S. KORN1CKER and THOMAS M. ILIFFE SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 568 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Folklife Studies Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world of science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
Proceedings Biological Society of Washington
Vol. 81, pp. 439-472 30 December 1968 PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON BATHYAL MYODOCOPID OSTRACODA FROM THE NORTHEASTERN GULF OF MEXICO BY LOUIS S. KORNJCKEB Smithsonian Institution, Washington, D. C. Myodocopid ostracods of the deeper waters of the Gulf of Mexico are virtually unknown . only 1 species, Cypridina fla- tus Tressler, 1949, having been previously reported from 1200 meters near Tortugas (Tressler, 1949, p. 336, p. 431). There- fore, I was quite pleased to receive from Dr. Willis E. Pequeg- nat and Mr. Thomas J. Bright a small collection containing myodocopid ostracods collected in a mid-water trawl that acci- dentally dragged along the bottom at a depth of 1000-1200 meters for 1.5 hours during the Texas A&M University cruise 66-A-9 of the R/V Alaminos on July 11, 1966. The Myodo- copida are described in the systematic part of this paper. Os- tracods in the sample are listed below: Order Myodocopida Suborder Myodocopina Superfamily Cypridinacea Tetragonodon rhamphodes new species 19 Paramekodon poidseni new species 19 Bathyvargula optilus new species 299,1 juv. Suborder Halocypridina Superfamily Halocypridacea Conchoecia atlantica (Lubbock) 2 9 9 Conchoecia valdimae Muller 2 9 9 Conchoecia macrocheira Muller 1 9 45—PROC. BIOL. SOC. WASH., VOL. 81, 1968 (439) 440 Proceedings of the Biological Society of Washington Order Poclocopida (ident. by Drs. R. H. Benson and R. F. Maddocks) Suborder Podocopina Bairdoppilata ?hirsuta (Brady) 19,4 MT shells Bairdia new species 29 9,9 MT shells. 2 single valves Echinocythereis echinata (Sars) 1 single valve Four specimens of bottom fish collected in the trawl con- tained ostracods in their stomachs or intestines: Nezumia hildebrandi (2 specimens), Dicrolene intronigra (1 specimen), and Dicromita agassizii (1 specimen). -
Cytogenetic Studies on Marine Ostracods: the Karyotype of Giguntocypris Muellen' Skogsberg, 1920 (Ostracoda, Myodocopida)
J.micropalaeontol., 4 (2): 159-164, August 1985 Cytogenetic studies on marine ostracods: the karyotype of Giguntocypris muellen’ Skogsberg, 1920 (Ostracoda, Myodocopida) ALICIA MOGUILEVSKY Department of Geology, University College of Wales, Aberystwyth, Dyfed SY23 3DB, U.K. ABSTRACT -The chromosome complement of a bathypelagic myodocopid ostracod, Giganto- cypris muelleri Skogsberg, 1920, is described.The karyotype of this bisexual species consists of 2n = 18 (16A + XX) for the female and 2n = 17 (16A + XO) for the male. These chromosomes are all metacentric and of very similar size, ranging from 19pm to 24km. This is the first description of the karyotype of a marine ostracod. INTRODUCTION Whereas the majority of oceanic planktonic species Most taxonomic studies of Recent species have been release their eggs into the surrounding water, the females concerned solely with carapace and appendage morpho- of G. muelleri retain them in a brood chamber where logy. Although cytogenetic studies on ostracods were they develop before being released as free swimming made as early as 1898 (Woltereck), the knowledge of juveniles. Specimens of Gigantocypris rnuelleri were their karyotypes remains rudimentary. Woltereck (op. collected during cruises of RRS ‘Discovery’ in the N.E. cit.) and other early papers (Schleip, 1909; Schmalz, Atlantic, in June 1981 (Cruise 121, S.W. of Azores) by 1912; Muller-Cale, 1913; Bauer, 1934, 1940) were the author, and in August/September 1983 by Dr. C. mainly concerned with the study of gametogenesis and Ellis (Cruise 140, N.E. and S.E. of Azores). Full station spermatogenesis of freshwater cyprids (Podocopida). data can be obtained from the Cruise Reports (Angel et Although the chromosome complement of some of al., 1981; Herring et al., 1983). -
Contributions in BIOLOGY and GEOLOGY
MILWAUKEE PUBLIC MUSEUM Contributions In BIOLOGY and GEOLOGY Number 51 November 29, 1982 A Compendium of Fossil Marine Families J. John Sepkoski, Jr. MILWAUKEE PUBLIC MUSEUM Contributions in BIOLOGY and GEOLOGY Number 51 November 29, 1982 A COMPENDIUM OF FOSSIL MARINE FAMILIES J. JOHN SEPKOSKI, JR. Department of the Geophysical Sciences University of Chicago REVIEWERS FOR THIS PUBLICATION: Robert Gernant, University of Wisconsin-Milwaukee David M. Raup, Field Museum of Natural History Frederick R. Schram, San Diego Natural History Museum Peter M. Sheehan, Milwaukee Public Museum ISBN 0-893260-081-9 Milwaukee Public Museum Press Published by the Order of the Board of Trustees CONTENTS Abstract ---- ---------- -- - ----------------------- 2 Introduction -- --- -- ------ - - - ------- - ----------- - - - 2 Compendium ----------------------------- -- ------ 6 Protozoa ----- - ------- - - - -- -- - -------- - ------ - 6 Porifera------------- --- ---------------------- 9 Archaeocyatha -- - ------ - ------ - - -- ---------- - - - - 14 Coelenterata -- - -- --- -- - - -- - - - - -- - -- - -- - - -- -- - -- 17 Platyhelminthes - - -- - - - -- - - -- - -- - -- - -- -- --- - - - - - - 24 Rhynchocoela - ---- - - - - ---- --- ---- - - ----------- - 24 Priapulida ------ ---- - - - - -- - - -- - ------ - -- ------ 24 Nematoda - -- - --- --- -- - -- --- - -- --- ---- -- - - -- -- 24 Mollusca ------------- --- --------------- ------ 24 Sipunculida ---------- --- ------------ ---- -- --- - 46 Echiurida ------ - --- - - - - - --- --- - -- --- - -- - - --- -
A New Genus and Two New Species of Cypridinidae (Crustacea: Ostracoda: Myodocopina) from Australia
AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Parker, A. R., 1998. A new genus and two new species of Cypridinidae (Crustacea: Ostracoda: Myodocopina) from Australia. Records of the Australian Museum 50(1): 1–17. [13 May 1998]. doi:10.3853/j.0067-1975.50.1998.1271 ISSN 0067-1975 Published by the Australian Museum, Sydney naturenature cultureculture discover discover AustralianAustralian Museum Museum science science is is freely freely accessible accessible online online at at www.australianmuseum.net.au/publications/www.australianmuseum.net.au/publications/ 66 CollegeCollege Street,Street, SydneySydney NSWNSW 2010,2010, AustraliaAustralia Records of the Australian Museum (1998) Vol. 50: 1-17. ISSN 0067-1975 A New Genus and Two New Species of Cypridinidae (Crustacea: Ostracoda: Myodocopina) from Australia A.R. PARKER Division of Invertebrate Zoology, Australian Museum, 6 College Street, Sydney, NSW 2000, Australia [email protected] ABSTRACT. A new genus and two new species of Cypridinidae, Lowrya taiti and Lowrya kornickeri, are described from New South Wales, Australia. Both species are scavengers. They possess an elongate frontal knob and a structurally coloured red area on the rostrum of the carapace. The adult males of these species bear large compound eyes with very large dorsal ommatidia and very large "suckers" arising from cup-shaped processes near the base of the c-setae of the first antennae. Lowrya taiti possesses "coelotrichs", which are unusual evagination/setal sensillae of the carapace (Parker, submitted), and a concave anterior margin of the left rostrum only. Lowrya kornickeri is unusual because it bears an additional small "sucker" distal to the large basal "sucker" on the basal setule of the b-seta of the male first antenna. -
Laboratory Culture of the California Sea Firefly Vargula Tsujii (Ostracoda: Cypridinidae)
bioRxiv preprint doi: https://doi.org/10.1101/708065; this version posted July 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Running title: Complete life cycle of the bioluminescent California Sea Firefly 2 3 4 Laboratory culture of the California Sea Firefly Vargula tsujii (Ostracoda: Cypridinidae): 5 Developing a model system for the evolution of marine bioluminescence 6 7 Jessica A. Goodheart1, Geetanjali Minsky1, Mira N. Brynjegard-Bialik1, Michael S. Drummond1, J. David 8 Munoz2, Timothy R. Fallon3,4, Darrin T. Schultz5,6, Jing-Ke Weng3,4, Elizabeth Torres2 & Todd H. 9 Oakley*1 10 11 1 Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, Santa 12 Barbara, CA 93106 13 2 Department of Biological Sciences, California State University, Los Angeles, CA 90032-8201, USA 14 3 Whitehead Institute for Biomedical Research, Cambridge, MA, 02142, USA 15 4 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA 16 5 Monterey Bay Aquarium Research Institute, Moss Landing, CA 95060, USA 17 6 Department of Biomolecular Engineering and Bioinformatics, University of California, Santa Cruz, 18 Santa Cruz, CA 96060, USA 19 20 21 *Corresponding author: [email protected] 22 23 24 25 26 bioRxiv preprint doi: https://doi.org/10.1101/708065; this version posted July 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.